Multiple sequence alignment - TraesCS4D01G230700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G230700 chr4D 100.000 7528 0 0 1 7528 390607529 390600002 0.000000e+00 13902.0
1 TraesCS4D01G230700 chr4D 93.333 240 5 4 5133 5372 390602160 390601932 2.010000e-90 344.0
2 TraesCS4D01G230700 chr4D 93.333 240 5 4 5370 5598 390602397 390602158 2.010000e-90 344.0
3 TraesCS4D01G230700 chr4D 90.625 64 3 3 1777 1839 503968323 503968384 1.740000e-11 82.4
4 TraesCS4D01G230700 chr4B 96.234 1593 47 8 2195 3783 480598039 480596456 0.000000e+00 2597.0
5 TraesCS4D01G230700 chr4B 90.502 1674 79 33 142 1799 480600149 480598540 0.000000e+00 2137.0
6 TraesCS4D01G230700 chr4B 96.496 1227 41 2 5664 6888 480594736 480593510 0.000000e+00 2026.0
7 TraesCS4D01G230700 chr4B 96.742 706 17 2 4455 5159 480595440 480594740 0.000000e+00 1171.0
8 TraesCS4D01G230700 chr4B 94.745 647 16 5 3831 4460 480596122 480595477 0.000000e+00 990.0
9 TraesCS4D01G230700 chr4B 86.316 665 32 27 6902 7517 480593440 480592786 0.000000e+00 669.0
10 TraesCS4D01G230700 chr4B 91.071 392 13 8 1841 2212 480598450 480598061 1.870000e-140 510.0
11 TraesCS4D01G230700 chr4B 100.000 124 0 0 1 124 480600320 480600197 5.880000e-56 230.0
12 TraesCS4D01G230700 chr4B 95.652 69 3 0 3777 3845 480596202 480596134 2.220000e-20 111.0
13 TraesCS4D01G230700 chr4A 95.120 1578 48 15 5401 6960 72298406 72296840 0.000000e+00 2460.0
14 TraesCS4D01G230700 chr4A 91.499 1694 68 32 646 2316 72303216 72301576 0.000000e+00 2261.0
15 TraesCS4D01G230700 chr4A 94.940 751 30 4 2998 3741 72300745 72299996 0.000000e+00 1170.0
16 TraesCS4D01G230700 chr4A 96.856 668 18 3 4455 5119 72299275 72298608 0.000000e+00 1114.0
17 TraesCS4D01G230700 chr4A 95.223 649 14 4 3831 4463 72299954 72299307 0.000000e+00 1011.0
18 TraesCS4D01G230700 chr4A 89.141 617 43 13 11 613 72303814 72303208 0.000000e+00 747.0
19 TraesCS4D01G230700 chr4A 92.126 508 35 3 2493 2997 72301345 72300840 0.000000e+00 712.0
20 TraesCS4D01G230700 chr4A 88.302 530 26 17 7005 7517 72296837 72296327 3.010000e-168 603.0
21 TraesCS4D01G230700 chr4A 96.651 209 6 1 5164 5372 72298406 72298199 5.590000e-91 346.0
22 TraesCS4D01G230700 chr4A 98.000 150 3 0 2314 2463 72301494 72301345 2.080000e-65 261.0
23 TraesCS4D01G230700 chr1B 98.039 51 1 0 1798 1848 301472130 301472180 1.040000e-13 89.8
24 TraesCS4D01G230700 chr1B 94.737 57 1 2 1798 1852 69235306 69235362 3.740000e-13 87.9
25 TraesCS4D01G230700 chr1B 91.803 61 5 0 1787 1847 348322723 348322783 1.350000e-12 86.1
26 TraesCS4D01G230700 chr6A 94.737 57 2 1 1787 1842 359016544 359016600 3.740000e-13 87.9
27 TraesCS4D01G230700 chr3B 94.737 57 2 1 1787 1842 203376672 203376616 3.740000e-13 87.9
28 TraesCS4D01G230700 chr3B 100.000 28 0 0 2178 2205 13750001 13750028 1.400000e-02 52.8
29 TraesCS4D01G230700 chr2B 93.443 61 1 3 1798 1856 536808794 536808853 3.740000e-13 87.9
30 TraesCS4D01G230700 chr2A 94.643 56 2 1 1796 1851 18339562 18339616 1.350000e-12 86.1
31 TraesCS4D01G230700 chrUn 96.154 52 1 1 1796 1847 339555103 339555053 4.840000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G230700 chr4D 390600002 390607529 7527 True 13902.000000 13902 100.000000 1 7528 1 chr4D.!!$R1 7527
1 TraesCS4D01G230700 chr4B 480592786 480600320 7534 True 1160.111111 2597 94.195333 1 7517 9 chr4B.!!$R1 7516
2 TraesCS4D01G230700 chr4A 72296327 72303814 7487 True 1068.500000 2460 93.785800 11 7517 10 chr4A.!!$R1 7506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 229 0.319555 TTCTCCAGCTGAACCGAACG 60.320 55.000 17.39 0.0 0.0 3.95 F
253 293 0.407139 AGAGACCAAGCCAGCCAAAT 59.593 50.000 0.00 0.0 0.0 2.32 F
911 976 0.458260 GCCGGGCGAAATAAACCATT 59.542 50.000 1.81 0.0 0.0 3.16 F
1418 1507 1.073199 CCCACAACCACTCCCACTC 59.927 63.158 0.00 0.0 0.0 3.51 F
2525 2845 0.105964 TGCTGGTGTCGTGCTAACTT 59.894 50.000 0.00 0.0 0.0 2.66 F
2725 3045 0.606401 CTGACATGGGAGGCGTTGTT 60.606 55.000 0.00 0.0 0.0 2.83 F
4411 5135 1.604278 GCCGAACATCTAGGGAAATGC 59.396 52.381 0.00 0.0 0.0 3.56 F
4960 5735 0.252881 ATCCTCAGCAACCTCCCTCA 60.253 55.000 0.00 0.0 0.0 3.86 F
5479 6435 0.038526 CCGTAACGTGAGAAGCCTGT 60.039 55.000 0.00 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2032 0.954452 AAGACAGAAGGCAAAAGGCG 59.046 50.000 0.00 0.00 46.16 5.52 R
1903 2073 4.228895 GGTTAGGACCTCCCCAATTAGAAA 59.771 45.833 0.00 0.00 42.99 2.52 R
2276 2512 0.550914 TAGGGCCTGTGCAATTAGGG 59.449 55.000 18.53 2.13 40.13 3.53 R
3315 3738 1.180029 CGACGTTCTCCCCTTCCTTA 58.820 55.000 0.00 0.00 0.00 2.69 R
3484 3908 1.806247 GCACGATGGCAGCACACTATA 60.806 52.381 2.73 0.00 0.00 1.31 R
4430 5154 2.437085 GCCAACTAGCCAAGGGTAAT 57.563 50.000 0.00 0.00 0.00 1.89 R
5460 6416 0.038526 ACAGGCTTCTCACGTTACGG 60.039 55.000 10.20 0.00 0.00 4.02 R
6287 7244 0.905357 AGTTAGGTTCCGCATGAGCT 59.095 50.000 0.00 0.00 39.10 4.09 R
7004 8027 0.739813 CAAACGAAGGCGACCCCTAG 60.740 60.000 0.00 0.00 45.62 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 132 4.657824 CGTGGGAGCCAACGTCGT 62.658 66.667 8.27 0.00 34.18 4.34
128 134 1.217244 GTGGGAGCCAACGTCGTAT 59.783 57.895 0.00 0.00 34.18 3.06
129 135 0.804933 GTGGGAGCCAACGTCGTATC 60.805 60.000 0.00 0.00 34.18 2.24
130 136 1.588139 GGGAGCCAACGTCGTATCG 60.588 63.158 0.00 0.00 0.00 2.92
131 137 1.138247 GGAGCCAACGTCGTATCGT 59.862 57.895 0.00 0.00 46.19 3.73
132 138 0.378257 GGAGCCAACGTCGTATCGTA 59.622 55.000 0.00 0.00 43.38 3.43
133 139 1.002033 GGAGCCAACGTCGTATCGTAT 60.002 52.381 0.00 0.00 43.38 3.06
134 140 2.224079 GGAGCCAACGTCGTATCGTATA 59.776 50.000 0.00 0.00 43.38 1.47
135 141 3.477122 GAGCCAACGTCGTATCGTATAG 58.523 50.000 0.00 0.00 43.38 1.31
136 142 2.874701 AGCCAACGTCGTATCGTATAGT 59.125 45.455 0.00 0.00 43.38 2.12
137 143 4.058124 AGCCAACGTCGTATCGTATAGTA 58.942 43.478 0.00 0.00 43.38 1.82
138 144 4.692625 AGCCAACGTCGTATCGTATAGTAT 59.307 41.667 0.00 0.00 43.38 2.12
139 145 4.785055 GCCAACGTCGTATCGTATAGTATG 59.215 45.833 0.00 0.00 43.38 2.39
140 146 4.785055 CCAACGTCGTATCGTATAGTATGC 59.215 45.833 0.00 0.00 43.38 3.14
141 147 4.590400 ACGTCGTATCGTATAGTATGCC 57.410 45.455 0.00 0.00 42.35 4.40
143 149 5.410924 ACGTCGTATCGTATAGTATGCCTA 58.589 41.667 0.00 0.00 42.35 3.93
144 150 5.289675 ACGTCGTATCGTATAGTATGCCTAC 59.710 44.000 0.00 0.00 42.35 3.18
145 151 5.553396 CGTCGTATCGTATAGTATGCCTACG 60.553 48.000 15.70 15.70 39.56 3.51
191 227 2.631160 TTTTCTCCAGCTGAACCGAA 57.369 45.000 17.39 8.90 0.00 4.30
192 228 1.878953 TTTCTCCAGCTGAACCGAAC 58.121 50.000 17.39 0.00 0.00 3.95
193 229 0.319555 TTCTCCAGCTGAACCGAACG 60.320 55.000 17.39 0.00 0.00 3.95
194 230 1.176619 TCTCCAGCTGAACCGAACGA 61.177 55.000 17.39 0.00 0.00 3.85
195 231 1.006571 TCCAGCTGAACCGAACGAC 60.007 57.895 17.39 0.00 0.00 4.34
253 293 0.407139 AGAGACCAAGCCAGCCAAAT 59.593 50.000 0.00 0.00 0.00 2.32
351 391 2.126228 CGTAAAGCGCCCACGAGA 60.126 61.111 17.96 0.00 43.93 4.04
352 392 2.442188 CGTAAAGCGCCCACGAGAC 61.442 63.158 17.96 0.90 43.93 3.36
353 393 2.098831 GTAAAGCGCCCACGAGACC 61.099 63.158 2.29 0.00 43.93 3.85
354 394 2.575893 TAAAGCGCCCACGAGACCA 61.576 57.895 2.29 0.00 43.93 4.02
355 395 2.501223 TAAAGCGCCCACGAGACCAG 62.501 60.000 2.29 0.00 43.93 4.00
359 399 3.371063 GCCCACGAGACCAGACGA 61.371 66.667 0.00 0.00 0.00 4.20
498 543 1.994916 TTAGCGCCGTTGTTACTACC 58.005 50.000 2.29 0.00 0.00 3.18
504 549 2.610433 GCCGTTGTTACTACCACTACC 58.390 52.381 0.00 0.00 0.00 3.18
505 550 2.675032 GCCGTTGTTACTACCACTACCC 60.675 54.545 0.00 0.00 0.00 3.69
506 551 2.562298 CCGTTGTTACTACCACTACCCA 59.438 50.000 0.00 0.00 0.00 4.51
509 554 3.548162 TGTTACTACCACTACCCACCT 57.452 47.619 0.00 0.00 0.00 4.00
528 580 1.001378 CTGGCCAAACGGTCTTCTTTG 60.001 52.381 7.01 0.00 0.00 2.77
558 610 2.333938 CGACTGTGTCCGTTCCGT 59.666 61.111 0.00 0.00 0.00 4.69
608 660 2.444895 AAAGCCCGCAAAACCCCA 60.445 55.556 0.00 0.00 0.00 4.96
613 665 2.902846 CCGCAAAACCCCACACGA 60.903 61.111 0.00 0.00 0.00 4.35
813 869 4.150454 CGGCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
814 870 2.123033 GGCCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
815 871 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
819 875 1.550374 TCCTCCTCCTCCTCCCCTT 60.550 63.158 0.00 0.00 0.00 3.95
880 945 1.450491 CTCTCCTCCTCGTCGCAGA 60.450 63.158 0.00 0.00 0.00 4.26
911 976 0.458260 GCCGGGCGAAATAAACCATT 59.542 50.000 1.81 0.00 0.00 3.16
917 988 3.056465 GGGCGAAATAAACCATTGGAACA 60.056 43.478 10.37 0.00 0.00 3.18
1417 1506 1.385347 TCCCACAACCACTCCCACT 60.385 57.895 0.00 0.00 0.00 4.00
1418 1507 1.073199 CCCACAACCACTCCCACTC 59.927 63.158 0.00 0.00 0.00 3.51
1419 1508 1.073199 CCACAACCACTCCCACTCC 59.927 63.158 0.00 0.00 0.00 3.85
1420 1509 1.073199 CACAACCACTCCCACTCCC 59.927 63.158 0.00 0.00 0.00 4.30
1421 1510 1.385347 ACAACCACTCCCACTCCCA 60.385 57.895 0.00 0.00 0.00 4.37
1422 1511 1.073199 CAACCACTCCCACTCCCAC 59.927 63.158 0.00 0.00 0.00 4.61
1507 1596 3.615110 CGGATCCGATAAAGATGGTGAGG 60.615 52.174 30.62 0.00 42.83 3.86
1510 1599 1.202533 CCGATAAAGATGGTGAGGCGT 60.203 52.381 0.00 0.00 0.00 5.68
1528 1617 2.659279 GCGTCTTCTCTTCGTTTCTCTG 59.341 50.000 0.00 0.00 0.00 3.35
1665 1754 2.421424 GAGACACCTGCTTGCTAATTGG 59.579 50.000 0.00 0.00 0.00 3.16
1683 1772 8.097038 GCTAATTGGATGAATAGAGGTGTGATA 58.903 37.037 0.00 0.00 0.00 2.15
1701 1790 6.095021 GTGTGATATCGGGTATGCATAGAGTA 59.905 42.308 6.67 0.00 0.00 2.59
1702 1791 6.661805 TGTGATATCGGGTATGCATAGAGTAA 59.338 38.462 6.67 0.00 0.00 2.24
1703 1792 7.177744 TGTGATATCGGGTATGCATAGAGTAAA 59.822 37.037 6.67 0.00 0.00 2.01
1825 1919 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
1826 1920 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
1827 1921 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
1828 1922 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1829 1923 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1830 1924 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1831 1925 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1832 1926 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1833 1927 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1834 1928 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1835 1929 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1836 1930 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1837 1931 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1864 2032 4.505324 AGTATTCAGGTCCTAAAAGGGC 57.495 45.455 0.00 0.00 39.92 5.19
1891 2061 1.694150 TGCCTTCTGTCTTGTGTAGCT 59.306 47.619 0.00 0.00 0.00 3.32
1892 2062 2.289072 TGCCTTCTGTCTTGTGTAGCTC 60.289 50.000 0.00 0.00 0.00 4.09
1949 2119 6.659242 ACCTACTGGATAAAGTTGTCCAAATG 59.341 38.462 10.32 2.88 45.95 2.32
2017 2187 7.536622 GTGTAAGATCAATTTGAGTTGCTTCAG 59.463 37.037 5.21 0.00 0.00 3.02
2138 2334 1.140312 GTCCTAGGGCATGATTCCCA 58.860 55.000 9.01 0.00 46.36 4.37
2276 2512 8.195436 TGTCTTGTGTAGCTCTATACAAATACC 58.805 37.037 16.30 8.14 43.28 2.73
2291 2527 2.364972 ATACCCCTAATTGCACAGGC 57.635 50.000 3.13 0.00 41.68 4.85
2525 2845 0.105964 TGCTGGTGTCGTGCTAACTT 59.894 50.000 0.00 0.00 0.00 2.66
2725 3045 0.606401 CTGACATGGGAGGCGTTGTT 60.606 55.000 0.00 0.00 0.00 2.83
2728 3048 2.676471 ATGGGAGGCGTTGTTGGC 60.676 61.111 0.00 0.00 0.00 4.52
2818 3141 1.612950 CTGTGCTTTACCAATGCCACA 59.387 47.619 0.00 0.00 0.00 4.17
2862 3185 9.167311 CTATTATTAGATTTGCGGGCTAGAAAT 57.833 33.333 0.00 0.00 0.00 2.17
2953 3276 4.404073 AGGAGAAGAATCTACGTTCTGCAT 59.596 41.667 0.00 0.00 41.83 3.96
3116 3537 3.541632 ACGGGCTTTGGTAATCATACTG 58.458 45.455 0.00 0.00 32.36 2.74
3263 3686 6.441093 TCATGTCCAATTAGTTTCTCATGC 57.559 37.500 0.00 0.00 33.74 4.06
3484 3908 7.891498 AGAAGTTTGTGTTAGGGTTTTGTAT 57.109 32.000 0.00 0.00 0.00 2.29
4076 4785 4.336889 TGGAATCTCAAACTTCAGTCGT 57.663 40.909 0.00 0.00 0.00 4.34
4411 5135 1.604278 GCCGAACATCTAGGGAAATGC 59.396 52.381 0.00 0.00 0.00 3.56
4416 5140 3.287867 ACATCTAGGGAAATGCCACAG 57.712 47.619 0.00 0.00 38.95 3.66
4430 5154 1.478510 GCCACAGCTTAGCAGAGTCTA 59.521 52.381 7.07 0.00 35.50 2.59
4438 5162 5.069781 CAGCTTAGCAGAGTCTATTACCCTT 59.930 44.000 7.07 0.00 0.00 3.95
4518 5285 9.860898 GATTCAACTATTTTATTGGACTTTGCT 57.139 29.630 0.00 0.00 0.00 3.91
4752 5525 3.964688 TGAGTTCAGAGACAACAAGGGTA 59.035 43.478 0.00 0.00 0.00 3.69
4960 5735 0.252881 ATCCTCAGCAACCTCCCTCA 60.253 55.000 0.00 0.00 0.00 3.86
5071 5846 1.834263 GGCCCTTTGAAGCTCTCTCTA 59.166 52.381 0.00 0.00 0.00 2.43
5112 5887 4.764823 TCCCCAGTAATTTTCATGTCACAC 59.235 41.667 0.00 0.00 0.00 3.82
5121 6077 7.523293 AATTTTCATGTCACACTGATGGTAA 57.477 32.000 0.00 0.00 0.00 2.85
5150 6106 1.136891 GGCTTGAACTGTTTGGCTTGT 59.863 47.619 0.00 0.00 0.00 3.16
5159 6115 5.914898 ACTGTTTGGCTTGTCTTACTTTT 57.085 34.783 0.00 0.00 0.00 2.27
5161 6117 7.027778 ACTGTTTGGCTTGTCTTACTTTTAG 57.972 36.000 0.00 0.00 0.00 1.85
5162 6118 6.602009 ACTGTTTGGCTTGTCTTACTTTTAGT 59.398 34.615 0.00 0.00 0.00 2.24
5163 6119 7.122204 ACTGTTTGGCTTGTCTTACTTTTAGTT 59.878 33.333 0.00 0.00 0.00 2.24
5164 6120 7.254852 TGTTTGGCTTGTCTTACTTTTAGTTG 58.745 34.615 0.00 0.00 0.00 3.16
5223 6179 4.827284 TCTTCGGTAGCAGACATCATATGA 59.173 41.667 8.10 8.10 0.00 2.15
5224 6180 5.478332 TCTTCGGTAGCAGACATCATATGAT 59.522 40.000 12.62 12.62 34.56 2.45
5284 6240 9.737427 TTTAGTTGGTACATAAACACATGTTTG 57.263 29.630 18.13 7.43 46.56 2.93
5285 6241 7.575414 AGTTGGTACATAAACACATGTTTGA 57.425 32.000 18.13 5.09 46.56 2.69
5286 6242 7.648142 AGTTGGTACATAAACACATGTTTGAG 58.352 34.615 18.13 12.82 46.56 3.02
5287 6243 7.284489 AGTTGGTACATAAACACATGTTTGAGT 59.716 33.333 18.13 16.88 46.56 3.41
5323 6279 6.967199 GTCTTCACGTTTTGAATTTCTCAACT 59.033 34.615 0.00 0.00 43.90 3.16
5350 6306 9.793259 AGGACAAATAAACATAATATCGGTCAT 57.207 29.630 0.00 0.00 0.00 3.06
5382 6338 9.981114 AATTAAAATAGTCCTTGAACTGTTTGG 57.019 29.630 0.00 0.00 38.96 3.28
5383 6339 5.453567 AAATAGTCCTTGAACTGTTTGGC 57.546 39.130 0.00 0.00 38.61 4.52
5384 6340 2.736670 AGTCCTTGAACTGTTTGGCT 57.263 45.000 0.00 0.00 0.00 4.75
5385 6341 3.018423 AGTCCTTGAACTGTTTGGCTT 57.982 42.857 0.00 0.00 0.00 4.35
5386 6342 2.689983 AGTCCTTGAACTGTTTGGCTTG 59.310 45.455 0.00 0.00 0.00 4.01
5387 6343 2.031120 TCCTTGAACTGTTTGGCTTGG 58.969 47.619 0.00 0.00 0.00 3.61
5388 6344 1.538849 CCTTGAACTGTTTGGCTTGGC 60.539 52.381 0.00 0.00 0.00 4.52
5389 6345 1.410153 CTTGAACTGTTTGGCTTGGCT 59.590 47.619 0.00 0.00 0.00 4.75
5390 6346 1.484038 TGAACTGTTTGGCTTGGCTT 58.516 45.000 0.00 0.00 0.00 4.35
5391 6347 2.660572 TGAACTGTTTGGCTTGGCTTA 58.339 42.857 0.00 0.00 0.00 3.09
5392 6348 2.360801 TGAACTGTTTGGCTTGGCTTAC 59.639 45.455 0.00 0.00 0.00 2.34
5393 6349 2.364972 ACTGTTTGGCTTGGCTTACT 57.635 45.000 0.00 0.00 0.00 2.24
5394 6350 2.666317 ACTGTTTGGCTTGGCTTACTT 58.334 42.857 0.00 0.00 0.00 2.24
5395 6351 3.031013 ACTGTTTGGCTTGGCTTACTTT 58.969 40.909 0.00 0.00 0.00 2.66
5396 6352 3.450817 ACTGTTTGGCTTGGCTTACTTTT 59.549 39.130 0.00 0.00 0.00 2.27
5397 6353 4.647399 ACTGTTTGGCTTGGCTTACTTTTA 59.353 37.500 0.00 0.00 0.00 1.52
5398 6354 5.195001 TGTTTGGCTTGGCTTACTTTTAG 57.805 39.130 0.00 0.00 0.00 1.85
5399 6355 4.647399 TGTTTGGCTTGGCTTACTTTTAGT 59.353 37.500 0.00 0.00 0.00 2.24
5400 6356 5.128008 TGTTTGGCTTGGCTTACTTTTAGTT 59.872 36.000 0.00 0.00 0.00 2.24
5401 6357 4.846779 TGGCTTGGCTTACTTTTAGTTG 57.153 40.909 0.00 0.00 0.00 3.16
5402 6358 4.465886 TGGCTTGGCTTACTTTTAGTTGA 58.534 39.130 0.00 0.00 0.00 3.18
5403 6359 4.277423 TGGCTTGGCTTACTTTTAGTTGAC 59.723 41.667 0.00 0.00 0.00 3.18
5404 6360 4.321008 GGCTTGGCTTACTTTTAGTTGACC 60.321 45.833 0.00 0.00 0.00 4.02
5405 6361 4.321008 GCTTGGCTTACTTTTAGTTGACCC 60.321 45.833 0.00 0.00 0.00 4.46
5406 6362 4.717279 TGGCTTACTTTTAGTTGACCCT 57.283 40.909 0.00 0.00 0.00 4.34
5407 6363 5.056553 TGGCTTACTTTTAGTTGACCCTT 57.943 39.130 0.00 0.00 0.00 3.95
5408 6364 5.067954 TGGCTTACTTTTAGTTGACCCTTC 58.932 41.667 0.00 0.00 0.00 3.46
5409 6365 5.163131 TGGCTTACTTTTAGTTGACCCTTCT 60.163 40.000 0.00 0.00 0.00 2.85
5410 6366 5.768662 GGCTTACTTTTAGTTGACCCTTCTT 59.231 40.000 0.00 0.00 0.00 2.52
5411 6367 6.072618 GGCTTACTTTTAGTTGACCCTTCTTC 60.073 42.308 0.00 0.00 0.00 2.87
5412 6368 6.485648 GCTTACTTTTAGTTGACCCTTCTTCA 59.514 38.462 0.00 0.00 0.00 3.02
5413 6369 7.520131 GCTTACTTTTAGTTGACCCTTCTTCAC 60.520 40.741 0.00 0.00 0.00 3.18
5414 6370 6.002653 ACTTTTAGTTGACCCTTCTTCACT 57.997 37.500 0.00 0.00 0.00 3.41
5415 6371 6.056236 ACTTTTAGTTGACCCTTCTTCACTC 58.944 40.000 0.00 0.00 0.00 3.51
5416 6372 5.888982 TTTAGTTGACCCTTCTTCACTCT 57.111 39.130 0.00 0.00 0.00 3.24
5417 6373 5.470047 TTAGTTGACCCTTCTTCACTCTC 57.530 43.478 0.00 0.00 0.00 3.20
5418 6374 2.635427 AGTTGACCCTTCTTCACTCTCC 59.365 50.000 0.00 0.00 0.00 3.71
5419 6375 2.368875 GTTGACCCTTCTTCACTCTCCA 59.631 50.000 0.00 0.00 0.00 3.86
5420 6376 2.689658 TGACCCTTCTTCACTCTCCAA 58.310 47.619 0.00 0.00 0.00 3.53
5421 6377 3.251484 TGACCCTTCTTCACTCTCCAAT 58.749 45.455 0.00 0.00 0.00 3.16
5422 6378 3.652869 TGACCCTTCTTCACTCTCCAATT 59.347 43.478 0.00 0.00 0.00 2.32
5423 6379 4.104738 TGACCCTTCTTCACTCTCCAATTT 59.895 41.667 0.00 0.00 0.00 1.82
5424 6380 5.066913 ACCCTTCTTCACTCTCCAATTTT 57.933 39.130 0.00 0.00 0.00 1.82
5425 6381 5.458595 ACCCTTCTTCACTCTCCAATTTTT 58.541 37.500 0.00 0.00 0.00 1.94
5450 6406 9.733556 TTTCTAATTTACATCTTTGGTAGCAGA 57.266 29.630 0.00 0.00 0.00 4.26
5451 6407 8.718102 TCTAATTTACATCTTTGGTAGCAGAC 57.282 34.615 0.00 0.00 0.00 3.51
5452 6408 8.318412 TCTAATTTACATCTTTGGTAGCAGACA 58.682 33.333 0.00 0.00 0.00 3.41
5453 6409 7.944729 AATTTACATCTTTGGTAGCAGACAT 57.055 32.000 0.00 0.00 0.00 3.06
5454 6410 6.985188 TTTACATCTTTGGTAGCAGACATC 57.015 37.500 0.00 0.00 0.00 3.06
5455 6411 4.558226 ACATCTTTGGTAGCAGACATCA 57.442 40.909 0.00 0.00 0.00 3.07
5456 6412 5.108187 ACATCTTTGGTAGCAGACATCAT 57.892 39.130 0.00 0.00 0.00 2.45
5457 6413 6.239217 ACATCTTTGGTAGCAGACATCATA 57.761 37.500 0.00 0.00 0.00 2.15
5458 6414 6.835174 ACATCTTTGGTAGCAGACATCATAT 58.165 36.000 0.00 0.00 0.00 1.78
5459 6415 6.709397 ACATCTTTGGTAGCAGACATCATATG 59.291 38.462 0.00 0.00 0.00 1.78
5460 6416 5.059161 TCTTTGGTAGCAGACATCATATGC 58.941 41.667 0.00 0.00 40.29 3.14
5461 6417 3.407424 TGGTAGCAGACATCATATGCC 57.593 47.619 0.00 0.00 40.89 4.40
5462 6418 2.289010 TGGTAGCAGACATCATATGCCG 60.289 50.000 0.00 0.00 40.89 5.69
5463 6419 2.289072 GGTAGCAGACATCATATGCCGT 60.289 50.000 0.00 0.00 40.89 5.68
5464 6420 3.056821 GGTAGCAGACATCATATGCCGTA 60.057 47.826 0.00 0.00 40.89 4.02
5465 6421 3.751479 AGCAGACATCATATGCCGTAA 57.249 42.857 0.00 0.00 40.89 3.18
5466 6422 3.393800 AGCAGACATCATATGCCGTAAC 58.606 45.455 0.00 0.00 40.89 2.50
5467 6423 2.155732 GCAGACATCATATGCCGTAACG 59.844 50.000 0.00 0.00 33.81 3.18
5468 6424 3.381045 CAGACATCATATGCCGTAACGT 58.619 45.455 0.00 0.00 0.00 3.99
5469 6425 3.182372 CAGACATCATATGCCGTAACGTG 59.818 47.826 0.00 0.00 0.00 4.49
5470 6426 3.067601 AGACATCATATGCCGTAACGTGA 59.932 43.478 0.00 0.00 0.00 4.35
5471 6427 3.381045 ACATCATATGCCGTAACGTGAG 58.619 45.455 0.00 0.00 0.00 3.51
5472 6428 3.067601 ACATCATATGCCGTAACGTGAGA 59.932 43.478 0.00 0.00 0.00 3.27
5473 6429 3.786516 TCATATGCCGTAACGTGAGAA 57.213 42.857 0.00 0.00 0.00 2.87
5474 6430 3.702330 TCATATGCCGTAACGTGAGAAG 58.298 45.455 0.00 0.00 0.00 2.85
5475 6431 1.917273 TATGCCGTAACGTGAGAAGC 58.083 50.000 0.00 0.00 0.00 3.86
5476 6432 0.739813 ATGCCGTAACGTGAGAAGCC 60.740 55.000 0.00 0.00 0.00 4.35
5477 6433 1.080025 GCCGTAACGTGAGAAGCCT 60.080 57.895 0.00 0.00 0.00 4.58
5478 6434 1.352156 GCCGTAACGTGAGAAGCCTG 61.352 60.000 0.00 0.00 0.00 4.85
5479 6435 0.038526 CCGTAACGTGAGAAGCCTGT 60.039 55.000 0.00 0.00 0.00 4.00
5480 6436 1.060713 CGTAACGTGAGAAGCCTGTG 58.939 55.000 0.00 0.00 0.00 3.66
5481 6437 1.335597 CGTAACGTGAGAAGCCTGTGA 60.336 52.381 0.00 0.00 0.00 3.58
5482 6438 2.671351 CGTAACGTGAGAAGCCTGTGAT 60.671 50.000 0.00 0.00 0.00 3.06
5483 6439 2.086054 AACGTGAGAAGCCTGTGATC 57.914 50.000 0.00 0.00 0.00 2.92
5484 6440 0.969149 ACGTGAGAAGCCTGTGATCA 59.031 50.000 0.00 0.00 0.00 2.92
5485 6441 1.552337 ACGTGAGAAGCCTGTGATCAT 59.448 47.619 0.00 0.00 0.00 2.45
5486 6442 1.931841 CGTGAGAAGCCTGTGATCATG 59.068 52.381 0.00 0.00 0.00 3.07
5487 6443 2.676176 CGTGAGAAGCCTGTGATCATGT 60.676 50.000 0.00 0.00 0.00 3.21
5488 6444 2.935201 GTGAGAAGCCTGTGATCATGTC 59.065 50.000 0.00 0.00 0.00 3.06
5489 6445 2.568509 TGAGAAGCCTGTGATCATGTCA 59.431 45.455 0.00 0.00 0.00 3.58
5490 6446 3.199289 TGAGAAGCCTGTGATCATGTCAT 59.801 43.478 0.00 0.00 39.48 3.06
5491 6447 3.542648 AGAAGCCTGTGATCATGTCATG 58.457 45.455 6.47 6.47 39.48 3.07
5492 6448 3.054582 AGAAGCCTGTGATCATGTCATGT 60.055 43.478 12.54 0.51 39.48 3.21
5493 6449 4.162888 AGAAGCCTGTGATCATGTCATGTA 59.837 41.667 12.54 0.56 39.48 2.29
5494 6450 4.701651 AGCCTGTGATCATGTCATGTAT 57.298 40.909 12.54 5.28 39.48 2.29
5495 6451 5.045012 AGCCTGTGATCATGTCATGTATT 57.955 39.130 12.54 0.00 39.48 1.89
5496 6452 5.443283 AGCCTGTGATCATGTCATGTATTT 58.557 37.500 12.54 0.00 39.48 1.40
5497 6453 5.889853 AGCCTGTGATCATGTCATGTATTTT 59.110 36.000 12.54 0.00 39.48 1.82
5498 6454 7.056006 AGCCTGTGATCATGTCATGTATTTTA 58.944 34.615 12.54 0.00 39.48 1.52
5499 6455 7.228108 AGCCTGTGATCATGTCATGTATTTTAG 59.772 37.037 12.54 5.93 39.48 1.85
5500 6456 7.012704 GCCTGTGATCATGTCATGTATTTTAGT 59.987 37.037 12.54 0.00 39.48 2.24
5501 6457 8.896744 CCTGTGATCATGTCATGTATTTTAGTT 58.103 33.333 12.54 0.00 39.48 2.24
5502 6458 9.712359 CTGTGATCATGTCATGTATTTTAGTTG 57.288 33.333 12.54 0.00 39.48 3.16
5503 6459 8.676401 TGTGATCATGTCATGTATTTTAGTTGG 58.324 33.333 12.54 0.00 39.48 3.77
5504 6460 8.677300 GTGATCATGTCATGTATTTTAGTTGGT 58.323 33.333 12.54 0.00 39.48 3.67
5505 6461 9.898152 TGATCATGTCATGTATTTTAGTTGGTA 57.102 29.630 12.54 0.00 0.00 3.25
5507 6463 9.679661 ATCATGTCATGTATTTTAGTTGGTACA 57.320 29.630 12.54 0.00 0.00 2.90
5508 6464 9.679661 TCATGTCATGTATTTTAGTTGGTACAT 57.320 29.630 12.54 0.00 39.30 2.29
5521 6477 9.737427 TTTAGTTGGTACATAAACACATGTTTG 57.263 29.630 18.13 7.43 46.56 2.93
5522 6478 7.575414 AGTTGGTACATAAACACATGTTTGA 57.425 32.000 18.13 5.09 46.56 2.69
5523 6479 7.648142 AGTTGGTACATAAACACATGTTTGAG 58.352 34.615 18.13 12.82 46.56 3.02
5524 6480 7.284489 AGTTGGTACATAAACACATGTTTGAGT 59.716 33.333 18.13 16.88 46.56 3.41
5525 6481 7.575414 TGGTACATAAACACATGTTTGAGTT 57.425 32.000 18.13 0.00 46.56 3.01
5526 6482 7.421599 TGGTACATAAACACATGTTTGAGTTG 58.578 34.615 18.13 12.58 46.56 3.16
5527 6483 7.067615 TGGTACATAAACACATGTTTGAGTTGT 59.932 33.333 18.13 16.39 46.56 3.32
5528 6484 7.378461 GGTACATAAACACATGTTTGAGTTGTG 59.622 37.037 18.13 3.64 46.56 3.33
5529 6485 5.748152 ACATAAACACATGTTTGAGTTGTGC 59.252 36.000 18.13 0.00 46.56 4.57
5530 6486 3.865011 AACACATGTTTGAGTTGTGCA 57.135 38.095 0.00 0.00 43.51 4.57
5531 6487 3.149436 ACACATGTTTGAGTTGTGCAC 57.851 42.857 10.75 10.75 43.51 4.57
5532 6488 2.159254 ACACATGTTTGAGTTGTGCACC 60.159 45.455 15.69 0.00 43.51 5.01
5533 6489 1.408702 ACATGTTTGAGTTGTGCACCC 59.591 47.619 15.69 4.81 0.00 4.61
5534 6490 1.682854 CATGTTTGAGTTGTGCACCCT 59.317 47.619 15.69 10.28 0.00 4.34
5535 6491 1.846007 TGTTTGAGTTGTGCACCCTT 58.154 45.000 15.69 0.00 0.00 3.95
5536 6492 2.175202 TGTTTGAGTTGTGCACCCTTT 58.825 42.857 15.69 0.00 0.00 3.11
5537 6493 2.094286 TGTTTGAGTTGTGCACCCTTTG 60.094 45.455 15.69 0.00 0.00 2.77
5538 6494 2.136298 TTGAGTTGTGCACCCTTTGA 57.864 45.000 15.69 0.00 0.00 2.69
5539 6495 2.136298 TGAGTTGTGCACCCTTTGAA 57.864 45.000 15.69 0.00 0.00 2.69
5540 6496 2.665165 TGAGTTGTGCACCCTTTGAAT 58.335 42.857 15.69 0.00 0.00 2.57
5541 6497 3.030291 TGAGTTGTGCACCCTTTGAATT 58.970 40.909 15.69 0.00 0.00 2.17
5542 6498 3.450457 TGAGTTGTGCACCCTTTGAATTT 59.550 39.130 15.69 0.00 0.00 1.82
5543 6499 4.051237 GAGTTGTGCACCCTTTGAATTTC 58.949 43.478 15.69 0.00 0.00 2.17
5544 6500 3.706086 AGTTGTGCACCCTTTGAATTTCT 59.294 39.130 15.69 0.00 0.00 2.52
5545 6501 4.051237 GTTGTGCACCCTTTGAATTTCTC 58.949 43.478 15.69 0.00 0.00 2.87
5546 6502 3.295093 TGTGCACCCTTTGAATTTCTCA 58.705 40.909 15.69 0.00 0.00 3.27
5547 6503 3.703556 TGTGCACCCTTTGAATTTCTCAA 59.296 39.130 15.69 0.00 42.48 3.02
5548 6504 4.051237 GTGCACCCTTTGAATTTCTCAAC 58.949 43.478 5.22 0.00 43.90 3.18
5549 6505 3.960102 TGCACCCTTTGAATTTCTCAACT 59.040 39.130 0.00 0.00 43.90 3.16
5550 6506 5.009610 GTGCACCCTTTGAATTTCTCAACTA 59.990 40.000 5.22 0.00 43.90 2.24
5551 6507 5.241506 TGCACCCTTTGAATTTCTCAACTAG 59.758 40.000 0.00 0.00 43.90 2.57
5552 6508 5.335976 GCACCCTTTGAATTTCTCAACTAGG 60.336 44.000 0.00 0.17 43.90 3.02
5553 6509 6.003950 CACCCTTTGAATTTCTCAACTAGGA 58.996 40.000 6.74 0.00 43.90 2.94
5554 6510 6.004574 ACCCTTTGAATTTCTCAACTAGGAC 58.995 40.000 6.74 0.00 43.90 3.85
5555 6511 6.003950 CCCTTTGAATTTCTCAACTAGGACA 58.996 40.000 6.74 0.00 43.90 4.02
5556 6512 6.490040 CCCTTTGAATTTCTCAACTAGGACAA 59.510 38.462 6.74 0.00 43.90 3.18
5557 6513 7.014230 CCCTTTGAATTTCTCAACTAGGACAAA 59.986 37.037 6.74 0.00 43.90 2.83
5558 6514 8.579863 CCTTTGAATTTCTCAACTAGGACAAAT 58.420 33.333 0.00 0.00 43.90 2.32
5645 6601 4.858850 TGATTGGTCAATGCCTGTTATCT 58.141 39.130 0.43 0.00 0.00 1.98
5655 6611 4.085357 TGCCTGTTATCTTCAGTTGTGT 57.915 40.909 0.00 0.00 0.00 3.72
5693 6650 8.612619 CATTGGGCTCCATATATAATTCGTAAC 58.387 37.037 0.00 0.00 31.53 2.50
5742 6699 5.237996 GGTAAACCCTGTTTGACTACACTTC 59.762 44.000 2.60 0.00 0.00 3.01
6287 7244 4.842531 TCAGATGATACAAGCTTCCCAA 57.157 40.909 0.00 0.00 0.00 4.12
6308 7265 1.941325 CTCATGCGGAACCTAACTCC 58.059 55.000 0.00 0.00 0.00 3.85
6349 7306 3.780804 TGTGCATAACAAGGGTACTGT 57.219 42.857 0.00 0.00 35.24 3.55
6624 7584 3.445008 ACTCTCCTATCCTTGACAAGCA 58.555 45.455 9.85 0.00 0.00 3.91
6628 7588 4.225942 TCTCCTATCCTTGACAAGCACAAT 59.774 41.667 9.85 3.35 0.00 2.71
6629 7589 4.264253 TCCTATCCTTGACAAGCACAATG 58.736 43.478 9.85 0.00 0.00 2.82
6645 7606 1.369091 AATGCCTTGATGCCGTCGAC 61.369 55.000 5.18 5.18 0.00 4.20
6651 7612 1.006825 TTGATGCCGTCGACTTGTCG 61.007 55.000 14.70 15.98 0.00 4.35
6677 7639 7.746475 GTGAGAATGAATGAAAACCGTCTTAAG 59.254 37.037 0.00 0.00 0.00 1.85
6889 7851 2.608752 GCCTGTGACAAGCTGAAAATGG 60.609 50.000 0.00 0.00 0.00 3.16
6891 7853 3.068590 CCTGTGACAAGCTGAAAATGGTT 59.931 43.478 0.00 0.00 0.00 3.67
6892 7854 4.278170 CCTGTGACAAGCTGAAAATGGTTA 59.722 41.667 0.00 0.00 0.00 2.85
6895 7857 6.215121 TGTGACAAGCTGAAAATGGTTATTG 58.785 36.000 0.00 0.00 0.00 1.90
6897 7859 5.304101 TGACAAGCTGAAAATGGTTATTGGT 59.696 36.000 0.00 0.00 0.00 3.67
6898 7860 5.783111 ACAAGCTGAAAATGGTTATTGGTC 58.217 37.500 0.00 0.00 0.00 4.02
6899 7861 5.170748 CAAGCTGAAAATGGTTATTGGTCC 58.829 41.667 0.00 0.00 0.00 4.46
6900 7862 3.769300 AGCTGAAAATGGTTATTGGTCCC 59.231 43.478 0.00 0.00 0.00 4.46
7002 8025 2.672714 TCTCGTTCAATCGTTCTGGTG 58.327 47.619 0.00 0.00 0.00 4.17
7003 8026 2.295070 TCTCGTTCAATCGTTCTGGTGA 59.705 45.455 0.00 0.00 0.00 4.02
7004 8027 2.400399 TCGTTCAATCGTTCTGGTGAC 58.600 47.619 0.00 0.00 0.00 3.67
7005 8028 2.035449 TCGTTCAATCGTTCTGGTGACT 59.965 45.455 0.00 0.00 0.00 3.41
7006 8029 3.253921 TCGTTCAATCGTTCTGGTGACTA 59.746 43.478 0.00 0.00 0.00 2.59
7007 8030 3.608506 CGTTCAATCGTTCTGGTGACTAG 59.391 47.826 0.00 0.00 0.00 2.57
7008 8031 3.868757 TCAATCGTTCTGGTGACTAGG 57.131 47.619 0.00 0.00 0.00 3.02
7009 8032 2.496070 TCAATCGTTCTGGTGACTAGGG 59.504 50.000 0.00 0.00 0.00 3.53
7010 8033 1.486211 ATCGTTCTGGTGACTAGGGG 58.514 55.000 0.00 0.00 0.00 4.79
7011 8034 0.113776 TCGTTCTGGTGACTAGGGGT 59.886 55.000 0.00 0.00 0.00 4.95
7173 8227 4.576463 GGATGGATACGAAATGCTGAACTT 59.424 41.667 0.00 0.00 42.51 2.66
7178 8232 6.257849 TGGATACGAAATGCTGAACTTATCAC 59.742 38.462 0.00 0.00 42.51 3.06
7181 8235 3.689161 CGAAATGCTGAACTTATCACCCA 59.311 43.478 0.00 0.00 33.47 4.51
7183 8237 5.391312 AAATGCTGAACTTATCACCCAAC 57.609 39.130 0.00 0.00 33.47 3.77
7184 8238 3.788227 TGCTGAACTTATCACCCAACT 57.212 42.857 0.00 0.00 33.47 3.16
7186 8240 4.072131 TGCTGAACTTATCACCCAACTTC 58.928 43.478 0.00 0.00 33.47 3.01
7241 8310 2.760374 TCACGTTACACATGCATGACA 58.240 42.857 32.75 13.89 0.00 3.58
7251 8320 3.124976 CACATGCATGACACGATTACACA 59.875 43.478 32.75 0.00 0.00 3.72
7280 8349 1.404181 GCCTACAGTCAGCAACGATCA 60.404 52.381 0.00 0.00 0.00 2.92
7387 8456 1.695114 CGATGGGAGGTACATGGCCA 61.695 60.000 8.56 8.56 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 130 5.956171 TCGTAGGCATACTATACGATACG 57.044 43.478 6.99 0.00 44.43 3.06
129 135 6.426980 TGGTAATCGTAGGCATACTATACG 57.573 41.667 6.99 0.00 42.70 3.06
130 136 7.540055 GTGTTGGTAATCGTAGGCATACTATAC 59.460 40.741 6.99 6.79 33.43 1.47
131 137 7.449395 AGTGTTGGTAATCGTAGGCATACTATA 59.551 37.037 6.99 0.00 33.43 1.31
132 138 6.267014 AGTGTTGGTAATCGTAGGCATACTAT 59.733 38.462 6.99 0.00 33.43 2.12
133 139 5.595542 AGTGTTGGTAATCGTAGGCATACTA 59.404 40.000 6.99 0.00 0.00 1.82
134 140 4.404715 AGTGTTGGTAATCGTAGGCATACT 59.595 41.667 6.99 0.00 0.00 2.12
135 141 4.690122 AGTGTTGGTAATCGTAGGCATAC 58.310 43.478 0.00 0.00 0.00 2.39
136 142 4.498513 CGAGTGTTGGTAATCGTAGGCATA 60.499 45.833 0.00 0.00 33.92 3.14
137 143 3.737047 CGAGTGTTGGTAATCGTAGGCAT 60.737 47.826 0.00 0.00 33.92 4.40
138 144 2.416296 CGAGTGTTGGTAATCGTAGGCA 60.416 50.000 0.00 0.00 33.92 4.75
139 145 2.190981 CGAGTGTTGGTAATCGTAGGC 58.809 52.381 0.00 0.00 33.92 3.93
140 146 2.165030 ACCGAGTGTTGGTAATCGTAGG 59.835 50.000 0.00 0.00 38.15 3.18
141 147 3.119743 TGACCGAGTGTTGGTAATCGTAG 60.120 47.826 0.00 0.00 40.63 3.51
143 149 1.614903 TGACCGAGTGTTGGTAATCGT 59.385 47.619 0.00 0.00 40.63 3.73
144 150 2.357327 TGACCGAGTGTTGGTAATCG 57.643 50.000 0.00 0.00 40.63 3.34
145 151 3.185797 GTGTTGACCGAGTGTTGGTAATC 59.814 47.826 0.00 0.00 40.63 1.75
146 152 3.135994 GTGTTGACCGAGTGTTGGTAAT 58.864 45.455 0.00 0.00 40.63 1.89
191 227 2.050985 GTTCGTTCGGTCGGTCGT 60.051 61.111 1.08 0.00 0.00 4.34
192 228 1.795177 GAGTTCGTTCGGTCGGTCG 60.795 63.158 1.08 0.00 0.00 4.79
193 229 1.000736 GTGAGTTCGTTCGGTCGGTC 61.001 60.000 1.08 0.00 0.00 4.79
194 230 1.008079 GTGAGTTCGTTCGGTCGGT 60.008 57.895 1.08 0.00 0.00 4.69
195 231 0.728466 GAGTGAGTTCGTTCGGTCGG 60.728 60.000 1.08 0.00 0.00 4.79
343 383 1.649390 CTCTCGTCTGGTCTCGTGGG 61.649 65.000 0.00 0.00 0.00 4.61
345 385 0.724549 CTCTCTCGTCTGGTCTCGTG 59.275 60.000 0.00 0.00 0.00 4.35
346 386 0.391927 CCTCTCTCGTCTGGTCTCGT 60.392 60.000 0.00 0.00 0.00 4.18
348 388 2.282407 GTACCTCTCTCGTCTGGTCTC 58.718 57.143 0.00 0.00 34.33 3.36
349 389 1.405797 CGTACCTCTCTCGTCTGGTCT 60.406 57.143 0.00 0.00 34.33 3.85
350 390 1.008329 CGTACCTCTCTCGTCTGGTC 58.992 60.000 0.00 0.00 34.33 4.02
351 391 1.025647 GCGTACCTCTCTCGTCTGGT 61.026 60.000 0.00 0.00 36.66 4.00
352 392 1.716826 GGCGTACCTCTCTCGTCTGG 61.717 65.000 0.00 0.00 0.00 3.86
353 393 1.722677 GGCGTACCTCTCTCGTCTG 59.277 63.158 0.00 0.00 0.00 3.51
354 394 1.814586 CGGCGTACCTCTCTCGTCT 60.815 63.158 0.00 0.00 0.00 4.18
355 395 2.034472 GACGGCGTACCTCTCTCGTC 62.034 65.000 14.74 0.00 39.73 4.20
359 399 2.439883 GGGACGGCGTACCTCTCT 60.440 66.667 33.52 0.00 32.80 3.10
498 543 0.893727 GTTTGGCCAGGTGGGTAGTG 60.894 60.000 5.11 0.00 39.65 2.74
504 549 2.976494 AAGACCGTTTGGCCAGGTGG 62.976 60.000 19.34 17.22 38.57 4.61
505 550 1.515521 GAAGACCGTTTGGCCAGGTG 61.516 60.000 19.34 6.55 38.57 4.00
506 551 1.228154 GAAGACCGTTTGGCCAGGT 60.228 57.895 14.76 14.76 41.63 4.00
509 554 1.028905 CAAAGAAGACCGTTTGGCCA 58.971 50.000 0.00 0.00 39.70 5.36
528 580 4.729856 AGTCGTGCGGTTACGGGC 62.730 66.667 0.00 0.00 43.85 6.13
558 610 1.070786 GACCGGTGGCAGTGAAAGA 59.929 57.895 14.63 0.00 0.00 2.52
627 679 4.344865 CTTGGACGTGGGGGTGGG 62.345 72.222 0.00 0.00 0.00 4.61
810 866 0.116342 TGCTAGTGTGAAGGGGAGGA 59.884 55.000 0.00 0.00 0.00 3.71
812 868 1.205893 GTCTGCTAGTGTGAAGGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
813 869 1.267121 GTCTGCTAGTGTGAAGGGGA 58.733 55.000 0.00 0.00 0.00 4.81
814 870 0.976641 TGTCTGCTAGTGTGAAGGGG 59.023 55.000 0.00 0.00 0.00 4.79
815 871 1.620819 AGTGTCTGCTAGTGTGAAGGG 59.379 52.381 0.00 0.00 0.00 3.95
931 1002 1.564348 GGGAGATCTAGGGTTTTGGCA 59.436 52.381 0.00 0.00 0.00 4.92
1437 1526 2.016704 CGGATCGTAGCGATGGTGC 61.017 63.158 8.82 0.00 47.00 5.01
1507 1596 2.659279 CAGAGAAACGAAGAGAAGACGC 59.341 50.000 0.00 0.00 0.00 5.19
1510 1599 5.661458 ACAAACAGAGAAACGAAGAGAAGA 58.339 37.500 0.00 0.00 0.00 2.87
1528 1617 3.881089 ACTAGCAGGTGTACCAAACAAAC 59.119 43.478 3.56 0.00 40.63 2.93
1665 1754 5.186021 ACCCGATATCACACCTCTATTCATC 59.814 44.000 3.12 0.00 0.00 2.92
1683 1772 7.246171 AGATTTTACTCTATGCATACCCGAT 57.754 36.000 1.16 0.00 0.00 4.18
1701 1790 3.268072 CCTGGAGGGAAGAGGAAGATTTT 59.732 47.826 0.00 0.00 37.23 1.82
1702 1791 2.849318 CCTGGAGGGAAGAGGAAGATTT 59.151 50.000 0.00 0.00 37.23 2.17
1703 1792 2.226013 ACCTGGAGGGAAGAGGAAGATT 60.226 50.000 0.00 0.00 40.27 2.40
1799 1893 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
1802 1896 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1806 1900 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1807 1901 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1808 1902 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1810 1904 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1811 1905 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1812 1906 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1813 1907 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1814 1908 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1815 1909 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1816 1910 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1817 1911 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1818 1912 8.495160 TTATATACTCCCTCCGTTCCAAAATA 57.505 34.615 0.00 0.00 0.00 1.40
1819 1913 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
1820 1914 6.384886 ACTTATATACTCCCTCCGTTCCAAAA 59.615 38.462 0.00 0.00 0.00 2.44
1821 1915 5.901276 ACTTATATACTCCCTCCGTTCCAAA 59.099 40.000 0.00 0.00 0.00 3.28
1822 1916 5.461327 ACTTATATACTCCCTCCGTTCCAA 58.539 41.667 0.00 0.00 0.00 3.53
1823 1917 5.070823 ACTTATATACTCCCTCCGTTCCA 57.929 43.478 0.00 0.00 0.00 3.53
1824 1918 7.395489 TGAATACTTATATACTCCCTCCGTTCC 59.605 40.741 0.00 0.00 0.00 3.62
1825 1919 8.345724 TGAATACTTATATACTCCCTCCGTTC 57.654 38.462 0.00 0.00 0.00 3.95
1826 1920 7.396623 CCTGAATACTTATATACTCCCTCCGTT 59.603 40.741 0.00 0.00 0.00 4.44
1827 1921 6.890814 CCTGAATACTTATATACTCCCTCCGT 59.109 42.308 0.00 0.00 0.00 4.69
1828 1922 6.890814 ACCTGAATACTTATATACTCCCTCCG 59.109 42.308 0.00 0.00 0.00 4.63
1829 1923 7.342541 GGACCTGAATACTTATATACTCCCTCC 59.657 44.444 0.00 0.00 0.00 4.30
1830 1924 8.117312 AGGACCTGAATACTTATATACTCCCTC 58.883 40.741 0.00 0.00 0.00 4.30
1831 1925 8.013806 AGGACCTGAATACTTATATACTCCCT 57.986 38.462 0.00 0.00 0.00 4.20
1832 1926 9.765295 TTAGGACCTGAATACTTATATACTCCC 57.235 37.037 3.53 0.00 0.00 4.30
1864 2032 0.954452 AAGACAGAAGGCAAAAGGCG 59.046 50.000 0.00 0.00 46.16 5.52
1891 2061 9.627123 CTCCCCAATTAGAAATTTGTGTATAGA 57.373 33.333 0.00 0.00 0.00 1.98
1892 2062 8.850156 CCTCCCCAATTAGAAATTTGTGTATAG 58.150 37.037 0.00 0.00 0.00 1.31
1899 2069 5.272402 AGGACCTCCCCAATTAGAAATTTG 58.728 41.667 0.00 0.00 36.42 2.32
1902 2072 5.103643 GGTTAGGACCTCCCCAATTAGAAAT 60.104 44.000 0.00 0.00 42.99 2.17
1903 2073 4.228895 GGTTAGGACCTCCCCAATTAGAAA 59.771 45.833 0.00 0.00 42.99 2.52
1949 2119 7.313951 AGATATCTTTGCACAGAAAAGCTAC 57.686 36.000 6.66 0.00 35.12 3.58
2017 2187 5.757808 TGCTAAAAAGGAAAATGTTTCAGCC 59.242 36.000 3.35 0.00 0.00 4.85
2212 2410 6.556974 ACCCTTTTAGGACCTGAATACTAC 57.443 41.667 3.53 0.00 37.67 2.73
2213 2411 7.147602 GCTTACCCTTTTAGGACCTGAATACTA 60.148 40.741 3.53 0.00 37.67 1.82
2276 2512 0.550914 TAGGGCCTGTGCAATTAGGG 59.449 55.000 18.53 2.13 40.13 3.53
2291 2527 8.196378 AGGATAACTTTATCAGTAGCTTAGGG 57.804 38.462 10.44 0.00 40.98 3.53
2465 2785 2.453983 ACTCAGAGCTGAAGCAGAAC 57.546 50.000 4.90 0.00 45.16 3.01
2466 2786 2.632028 AGAACTCAGAGCTGAAGCAGAA 59.368 45.455 4.90 0.00 45.16 3.02
2525 2845 4.937201 AATGATAGACTACGGCATGACA 57.063 40.909 0.00 0.00 0.00 3.58
2725 3045 2.126618 CGAGTTAGCACGACGCCA 60.127 61.111 0.00 0.00 44.04 5.69
2728 3048 2.337101 GTGACGAGTTAGCACGACG 58.663 57.895 3.10 0.00 35.04 5.12
2922 3245 9.367444 GAACGTAGATTCTTCTCCTTTTATCAA 57.633 33.333 0.00 0.00 33.17 2.57
2923 3246 8.750298 AGAACGTAGATTCTTCTCCTTTTATCA 58.250 33.333 0.00 0.00 35.29 2.15
3116 3537 2.427453 TGAGCGGAAGACATAGAAGGAC 59.573 50.000 0.00 0.00 0.00 3.85
3263 3686 2.932614 CGCCCTAGAAACATCAAGAGTG 59.067 50.000 0.00 0.00 0.00 3.51
3315 3738 1.180029 CGACGTTCTCCCCTTCCTTA 58.820 55.000 0.00 0.00 0.00 2.69
3484 3908 1.806247 GCACGATGGCAGCACACTATA 60.806 52.381 2.73 0.00 0.00 1.31
4076 4785 8.822855 CGTGTTTTGTAATAGGATAATGCAGTA 58.177 33.333 0.00 0.00 0.00 2.74
4386 5105 4.974645 TTCCCTAGATGTTCGGCAATAT 57.025 40.909 0.00 0.00 0.00 1.28
4411 5135 4.399004 AATAGACTCTGCTAAGCTGTGG 57.601 45.455 0.00 0.00 0.00 4.17
4416 5140 5.293560 CAAGGGTAATAGACTCTGCTAAGC 58.706 45.833 0.00 0.00 38.22 3.09
4430 5154 2.437085 GCCAACTAGCCAAGGGTAAT 57.563 50.000 0.00 0.00 0.00 1.89
4515 5282 3.129871 GCACCAAGCAAAATTAACAGCA 58.870 40.909 0.00 0.00 44.79 4.41
4516 5283 3.793776 GCACCAAGCAAAATTAACAGC 57.206 42.857 0.00 0.00 44.79 4.40
4723 5491 7.012327 CCTTGTTGTCTCTGAACTCACATTTAA 59.988 37.037 0.00 0.00 0.00 1.52
4724 5492 6.483307 CCTTGTTGTCTCTGAACTCACATTTA 59.517 38.462 0.00 0.00 0.00 1.40
4725 5493 5.297776 CCTTGTTGTCTCTGAACTCACATTT 59.702 40.000 0.00 0.00 0.00 2.32
4726 5494 4.818546 CCTTGTTGTCTCTGAACTCACATT 59.181 41.667 0.00 0.00 0.00 2.71
4727 5495 4.384056 CCTTGTTGTCTCTGAACTCACAT 58.616 43.478 0.00 0.00 0.00 3.21
4752 5525 1.763770 CAACCCAGGAACAGGCTCT 59.236 57.895 0.00 0.00 31.64 4.09
5071 5846 2.778270 GGGAAAGGCTTACCCTGTAGAT 59.222 50.000 15.41 0.00 45.62 1.98
5112 5887 6.586344 TCAAGCCTCTTAAGATTACCATCAG 58.414 40.000 5.44 0.00 0.00 2.90
5121 6077 5.474876 CCAAACAGTTCAAGCCTCTTAAGAT 59.525 40.000 5.44 0.00 0.00 2.40
5150 6106 7.713942 GTGAAGAAGGGTCAACTAAAAGTAAGA 59.286 37.037 0.00 0.00 0.00 2.10
5159 6115 3.833070 GGAGAGTGAAGAAGGGTCAACTA 59.167 47.826 0.00 0.00 0.00 2.24
5161 6117 2.368875 TGGAGAGTGAAGAAGGGTCAAC 59.631 50.000 0.00 0.00 0.00 3.18
5162 6118 2.689658 TGGAGAGTGAAGAAGGGTCAA 58.310 47.619 0.00 0.00 0.00 3.18
5163 6119 2.398754 TGGAGAGTGAAGAAGGGTCA 57.601 50.000 0.00 0.00 0.00 4.02
5164 6120 3.990959 ATTGGAGAGTGAAGAAGGGTC 57.009 47.619 0.00 0.00 0.00 4.46
5223 6179 4.558226 TCACAGGCTTCTCATGTTACAT 57.442 40.909 0.00 0.00 37.65 2.29
5224 6180 4.020307 TGATCACAGGCTTCTCATGTTACA 60.020 41.667 0.00 0.00 37.65 2.41
5230 6186 3.199289 TGACATGATCACAGGCTTCTCAT 59.801 43.478 0.00 0.00 29.99 2.90
5284 6240 3.685058 GTGAAGACTGTTTGCACAACTC 58.315 45.455 4.65 4.19 30.36 3.01
5285 6241 2.095853 CGTGAAGACTGTTTGCACAACT 59.904 45.455 9.82 0.00 30.36 3.16
5286 6242 2.159572 ACGTGAAGACTGTTTGCACAAC 60.160 45.455 9.82 0.00 30.36 3.32
5287 6243 2.080693 ACGTGAAGACTGTTTGCACAA 58.919 42.857 9.82 0.00 30.36 3.33
5356 6312 9.981114 CCAAACAGTTCAAGGACTATTTTAATT 57.019 29.630 0.00 0.00 24.31 1.40
5357 6313 8.088365 GCCAAACAGTTCAAGGACTATTTTAAT 58.912 33.333 4.08 0.00 24.31 1.40
5358 6314 7.286775 AGCCAAACAGTTCAAGGACTATTTTAA 59.713 33.333 4.08 0.00 24.31 1.52
5359 6315 6.775629 AGCCAAACAGTTCAAGGACTATTTTA 59.224 34.615 4.08 0.00 24.31 1.52
5360 6316 5.598417 AGCCAAACAGTTCAAGGACTATTTT 59.402 36.000 4.08 0.00 24.31 1.82
5361 6317 5.140454 AGCCAAACAGTTCAAGGACTATTT 58.860 37.500 4.08 0.00 26.78 1.40
5362 6318 4.729868 AGCCAAACAGTTCAAGGACTATT 58.270 39.130 4.08 0.00 0.00 1.73
5363 6319 4.373156 AGCCAAACAGTTCAAGGACTAT 57.627 40.909 4.08 0.00 0.00 2.12
5364 6320 3.857157 AGCCAAACAGTTCAAGGACTA 57.143 42.857 4.08 0.00 0.00 2.59
5365 6321 2.689983 CAAGCCAAACAGTTCAAGGACT 59.310 45.455 4.08 0.00 0.00 3.85
5366 6322 2.223805 CCAAGCCAAACAGTTCAAGGAC 60.224 50.000 4.08 0.00 0.00 3.85
5367 6323 2.031120 CCAAGCCAAACAGTTCAAGGA 58.969 47.619 4.08 0.00 0.00 3.36
5368 6324 1.538849 GCCAAGCCAAACAGTTCAAGG 60.539 52.381 0.00 0.00 0.00 3.61
5369 6325 1.410153 AGCCAAGCCAAACAGTTCAAG 59.590 47.619 0.00 0.00 0.00 3.02
5370 6326 1.484038 AGCCAAGCCAAACAGTTCAA 58.516 45.000 0.00 0.00 0.00 2.69
5371 6327 1.484038 AAGCCAAGCCAAACAGTTCA 58.516 45.000 0.00 0.00 0.00 3.18
5372 6328 2.623416 AGTAAGCCAAGCCAAACAGTTC 59.377 45.455 0.00 0.00 0.00 3.01
5373 6329 2.666317 AGTAAGCCAAGCCAAACAGTT 58.334 42.857 0.00 0.00 0.00 3.16
5374 6330 2.364972 AGTAAGCCAAGCCAAACAGT 57.635 45.000 0.00 0.00 0.00 3.55
5375 6331 3.733443 AAAGTAAGCCAAGCCAAACAG 57.267 42.857 0.00 0.00 0.00 3.16
5376 6332 4.647399 ACTAAAAGTAAGCCAAGCCAAACA 59.353 37.500 0.00 0.00 0.00 2.83
5377 6333 5.196341 ACTAAAAGTAAGCCAAGCCAAAC 57.804 39.130 0.00 0.00 0.00 2.93
5378 6334 5.361285 TCAACTAAAAGTAAGCCAAGCCAAA 59.639 36.000 0.00 0.00 0.00 3.28
5379 6335 4.890581 TCAACTAAAAGTAAGCCAAGCCAA 59.109 37.500 0.00 0.00 0.00 4.52
5380 6336 4.277423 GTCAACTAAAAGTAAGCCAAGCCA 59.723 41.667 0.00 0.00 0.00 4.75
5381 6337 4.321008 GGTCAACTAAAAGTAAGCCAAGCC 60.321 45.833 0.00 0.00 0.00 4.35
5382 6338 4.321008 GGGTCAACTAAAAGTAAGCCAAGC 60.321 45.833 5.99 0.00 0.00 4.01
5383 6339 5.070685 AGGGTCAACTAAAAGTAAGCCAAG 58.929 41.667 11.10 0.00 0.00 3.61
5384 6340 5.056553 AGGGTCAACTAAAAGTAAGCCAA 57.943 39.130 11.10 0.00 0.00 4.52
5385 6341 4.717279 AGGGTCAACTAAAAGTAAGCCA 57.283 40.909 11.10 0.00 0.00 4.75
5386 6342 5.314529 AGAAGGGTCAACTAAAAGTAAGCC 58.685 41.667 3.59 3.59 0.00 4.35
5387 6343 6.485648 TGAAGAAGGGTCAACTAAAAGTAAGC 59.514 38.462 0.00 0.00 0.00 3.09
5388 6344 7.715686 AGTGAAGAAGGGTCAACTAAAAGTAAG 59.284 37.037 0.00 0.00 0.00 2.34
5389 6345 7.571025 AGTGAAGAAGGGTCAACTAAAAGTAA 58.429 34.615 0.00 0.00 0.00 2.24
5390 6346 7.070821 AGAGTGAAGAAGGGTCAACTAAAAGTA 59.929 37.037 0.00 0.00 0.00 2.24
5391 6347 6.002653 AGTGAAGAAGGGTCAACTAAAAGT 57.997 37.500 0.00 0.00 0.00 2.66
5392 6348 6.292150 AGAGTGAAGAAGGGTCAACTAAAAG 58.708 40.000 0.00 0.00 0.00 2.27
5393 6349 6.248569 AGAGTGAAGAAGGGTCAACTAAAA 57.751 37.500 0.00 0.00 0.00 1.52
5394 6350 5.221661 GGAGAGTGAAGAAGGGTCAACTAAA 60.222 44.000 0.00 0.00 0.00 1.85
5395 6351 4.283722 GGAGAGTGAAGAAGGGTCAACTAA 59.716 45.833 0.00 0.00 0.00 2.24
5396 6352 3.833070 GGAGAGTGAAGAAGGGTCAACTA 59.167 47.826 0.00 0.00 0.00 2.24
5397 6353 2.635427 GGAGAGTGAAGAAGGGTCAACT 59.365 50.000 0.00 0.00 0.00 3.16
5398 6354 2.368875 TGGAGAGTGAAGAAGGGTCAAC 59.631 50.000 0.00 0.00 0.00 3.18
5399 6355 2.689658 TGGAGAGTGAAGAAGGGTCAA 58.310 47.619 0.00 0.00 0.00 3.18
5400 6356 2.398754 TGGAGAGTGAAGAAGGGTCA 57.601 50.000 0.00 0.00 0.00 4.02
5401 6357 3.990959 ATTGGAGAGTGAAGAAGGGTC 57.009 47.619 0.00 0.00 0.00 4.46
5402 6358 4.731313 AAATTGGAGAGTGAAGAAGGGT 57.269 40.909 0.00 0.00 0.00 4.34
5424 6380 9.733556 TCTGCTACCAAAGATGTAAATTAGAAA 57.266 29.630 0.00 0.00 0.00 2.52
5425 6381 9.162764 GTCTGCTACCAAAGATGTAAATTAGAA 57.837 33.333 0.00 0.00 0.00 2.10
5426 6382 8.318412 TGTCTGCTACCAAAGATGTAAATTAGA 58.682 33.333 0.00 0.00 0.00 2.10
5427 6383 8.492673 TGTCTGCTACCAAAGATGTAAATTAG 57.507 34.615 0.00 0.00 0.00 1.73
5428 6384 9.109393 GATGTCTGCTACCAAAGATGTAAATTA 57.891 33.333 0.00 0.00 0.00 1.40
5429 6385 7.611467 TGATGTCTGCTACCAAAGATGTAAATT 59.389 33.333 0.00 0.00 0.00 1.82
5430 6386 7.112122 TGATGTCTGCTACCAAAGATGTAAAT 58.888 34.615 0.00 0.00 0.00 1.40
5431 6387 6.472016 TGATGTCTGCTACCAAAGATGTAAA 58.528 36.000 0.00 0.00 0.00 2.01
5432 6388 6.048732 TGATGTCTGCTACCAAAGATGTAA 57.951 37.500 0.00 0.00 0.00 2.41
5433 6389 5.675684 TGATGTCTGCTACCAAAGATGTA 57.324 39.130 0.00 0.00 0.00 2.29
5434 6390 4.558226 TGATGTCTGCTACCAAAGATGT 57.442 40.909 0.00 0.00 0.00 3.06
5435 6391 6.348295 GCATATGATGTCTGCTACCAAAGATG 60.348 42.308 6.97 0.00 33.15 2.90
5436 6392 5.704515 GCATATGATGTCTGCTACCAAAGAT 59.295 40.000 6.97 0.00 33.15 2.40
5437 6393 5.059161 GCATATGATGTCTGCTACCAAAGA 58.941 41.667 6.97 0.00 33.15 2.52
5438 6394 4.214971 GGCATATGATGTCTGCTACCAAAG 59.785 45.833 6.97 0.00 36.18 2.77
5439 6395 4.136796 GGCATATGATGTCTGCTACCAAA 58.863 43.478 6.97 0.00 36.18 3.28
5440 6396 3.743521 GGCATATGATGTCTGCTACCAA 58.256 45.455 6.97 0.00 36.18 3.67
5441 6397 2.289010 CGGCATATGATGTCTGCTACCA 60.289 50.000 6.97 0.00 36.18 3.25
5442 6398 2.289072 ACGGCATATGATGTCTGCTACC 60.289 50.000 6.97 0.00 36.18 3.18
5443 6399 3.032017 ACGGCATATGATGTCTGCTAC 57.968 47.619 6.97 0.00 36.18 3.58
5444 6400 4.556233 GTTACGGCATATGATGTCTGCTA 58.444 43.478 6.97 0.00 36.18 3.49
5445 6401 3.393800 GTTACGGCATATGATGTCTGCT 58.606 45.455 6.97 0.00 36.18 4.24
5446 6402 2.155732 CGTTACGGCATATGATGTCTGC 59.844 50.000 6.97 0.00 31.27 4.26
5447 6403 3.182372 CACGTTACGGCATATGATGTCTG 59.818 47.826 10.20 0.00 31.27 3.51
5448 6404 3.067601 TCACGTTACGGCATATGATGTCT 59.932 43.478 10.20 0.00 31.27 3.41
5449 6405 3.377439 TCACGTTACGGCATATGATGTC 58.623 45.455 10.20 0.00 0.00 3.06
5450 6406 3.067601 TCTCACGTTACGGCATATGATGT 59.932 43.478 10.20 6.21 0.00 3.06
5451 6407 3.638484 TCTCACGTTACGGCATATGATG 58.362 45.455 10.20 0.00 0.00 3.07
5452 6408 4.299155 CTTCTCACGTTACGGCATATGAT 58.701 43.478 10.20 0.00 0.00 2.45
5453 6409 3.702330 CTTCTCACGTTACGGCATATGA 58.298 45.455 10.20 2.20 0.00 2.15
5454 6410 2.218759 GCTTCTCACGTTACGGCATATG 59.781 50.000 10.20 0.00 0.00 1.78
5455 6411 2.470821 GCTTCTCACGTTACGGCATAT 58.529 47.619 10.20 0.00 0.00 1.78
5456 6412 1.470285 GGCTTCTCACGTTACGGCATA 60.470 52.381 10.20 0.00 0.00 3.14
5457 6413 0.739813 GGCTTCTCACGTTACGGCAT 60.740 55.000 10.20 0.00 0.00 4.40
5458 6414 1.373748 GGCTTCTCACGTTACGGCA 60.374 57.895 10.20 0.00 0.00 5.69
5459 6415 1.080025 AGGCTTCTCACGTTACGGC 60.080 57.895 10.20 1.00 0.00 5.68
5460 6416 0.038526 ACAGGCTTCTCACGTTACGG 60.039 55.000 10.20 0.00 0.00 4.02
5461 6417 1.060713 CACAGGCTTCTCACGTTACG 58.939 55.000 2.19 2.19 0.00 3.18
5462 6418 2.433868 TCACAGGCTTCTCACGTTAC 57.566 50.000 0.00 0.00 0.00 2.50
5463 6419 2.560981 TGATCACAGGCTTCTCACGTTA 59.439 45.455 0.00 0.00 0.00 3.18
5464 6420 1.344438 TGATCACAGGCTTCTCACGTT 59.656 47.619 0.00 0.00 0.00 3.99
5465 6421 0.969149 TGATCACAGGCTTCTCACGT 59.031 50.000 0.00 0.00 0.00 4.49
5466 6422 1.931841 CATGATCACAGGCTTCTCACG 59.068 52.381 0.00 0.00 0.00 4.35
5467 6423 2.935201 GACATGATCACAGGCTTCTCAC 59.065 50.000 0.00 0.00 0.00 3.51
5468 6424 2.568509 TGACATGATCACAGGCTTCTCA 59.431 45.455 0.00 0.00 29.99 3.27
5469 6425 3.257469 TGACATGATCACAGGCTTCTC 57.743 47.619 0.00 0.00 29.99 2.87
5470 6426 3.054582 ACATGACATGATCACAGGCTTCT 60.055 43.478 22.19 0.00 41.24 2.85
5471 6427 3.276857 ACATGACATGATCACAGGCTTC 58.723 45.455 22.19 0.00 41.24 3.86
5472 6428 3.361281 ACATGACATGATCACAGGCTT 57.639 42.857 22.19 0.00 41.24 4.35
5473 6429 4.701651 ATACATGACATGATCACAGGCT 57.298 40.909 22.19 0.00 41.24 4.58
5474 6430 5.762825 AAATACATGACATGATCACAGGC 57.237 39.130 22.19 0.00 41.24 4.85
5475 6431 8.442632 ACTAAAATACATGACATGATCACAGG 57.557 34.615 22.19 9.13 41.24 4.00
5476 6432 9.712359 CAACTAAAATACATGACATGATCACAG 57.288 33.333 22.19 12.58 41.24 3.66
5477 6433 8.676401 CCAACTAAAATACATGACATGATCACA 58.324 33.333 22.19 0.00 41.24 3.58
5478 6434 8.677300 ACCAACTAAAATACATGACATGATCAC 58.323 33.333 22.19 0.00 41.24 3.06
5479 6435 8.806429 ACCAACTAAAATACATGACATGATCA 57.194 30.769 22.19 0.00 43.13 2.92
5481 6437 9.679661 TGTACCAACTAAAATACATGACATGAT 57.320 29.630 22.19 8.26 0.00 2.45
5482 6438 9.679661 ATGTACCAACTAAAATACATGACATGA 57.320 29.630 22.19 6.26 36.99 3.07
5495 6451 9.737427 CAAACATGTGTTTATGTACCAACTAAA 57.263 29.630 10.49 0.00 45.54 1.85
5496 6452 9.121658 TCAAACATGTGTTTATGTACCAACTAA 57.878 29.630 10.49 0.00 45.54 2.24
5497 6453 8.678593 TCAAACATGTGTTTATGTACCAACTA 57.321 30.769 10.49 0.00 45.54 2.24
5498 6454 7.284489 ACTCAAACATGTGTTTATGTACCAACT 59.716 33.333 10.49 0.00 45.54 3.16
5499 6455 7.422399 ACTCAAACATGTGTTTATGTACCAAC 58.578 34.615 10.49 0.00 45.54 3.77
5500 6456 7.575414 ACTCAAACATGTGTTTATGTACCAA 57.425 32.000 10.49 0.00 45.54 3.67
5501 6457 7.067615 ACAACTCAAACATGTGTTTATGTACCA 59.932 33.333 10.49 0.00 45.54 3.25
5502 6458 7.378461 CACAACTCAAACATGTGTTTATGTACC 59.622 37.037 10.49 0.00 45.54 3.34
5503 6459 7.096640 GCACAACTCAAACATGTGTTTATGTAC 60.097 37.037 10.49 5.92 45.54 2.90
5504 6460 6.915300 GCACAACTCAAACATGTGTTTATGTA 59.085 34.615 10.49 0.00 45.54 2.29
5505 6461 5.748152 GCACAACTCAAACATGTGTTTATGT 59.252 36.000 10.49 9.47 45.54 2.29
5506 6462 5.747675 TGCACAACTCAAACATGTGTTTATG 59.252 36.000 10.49 8.93 45.54 1.90
5507 6463 5.748152 GTGCACAACTCAAACATGTGTTTAT 59.252 36.000 13.17 0.00 45.54 1.40
5508 6464 5.098893 GTGCACAACTCAAACATGTGTTTA 58.901 37.500 13.17 0.73 45.54 2.01
5510 6466 3.510719 GTGCACAACTCAAACATGTGTT 58.489 40.909 13.17 0.00 44.79 3.32
5511 6467 2.159254 GGTGCACAACTCAAACATGTGT 60.159 45.455 20.43 0.00 44.79 3.72
5512 6468 2.462889 GGTGCACAACTCAAACATGTG 58.537 47.619 20.43 0.97 45.54 3.21
5513 6469 1.408702 GGGTGCACAACTCAAACATGT 59.591 47.619 20.43 0.00 0.00 3.21
5514 6470 1.682854 AGGGTGCACAACTCAAACATG 59.317 47.619 20.43 0.00 0.00 3.21
5515 6471 2.071778 AGGGTGCACAACTCAAACAT 57.928 45.000 20.43 0.00 0.00 2.71
5516 6472 1.846007 AAGGGTGCACAACTCAAACA 58.154 45.000 20.43 0.00 0.00 2.83
5517 6473 2.165437 TCAAAGGGTGCACAACTCAAAC 59.835 45.455 20.43 0.00 0.00 2.93
5518 6474 2.451490 TCAAAGGGTGCACAACTCAAA 58.549 42.857 20.43 2.50 0.00 2.69
5519 6475 2.136298 TCAAAGGGTGCACAACTCAA 57.864 45.000 20.43 2.83 0.00 3.02
5520 6476 2.136298 TTCAAAGGGTGCACAACTCA 57.864 45.000 20.43 1.52 0.00 3.41
5521 6477 3.733443 AATTCAAAGGGTGCACAACTC 57.267 42.857 20.43 4.92 0.00 3.01
5522 6478 3.706086 AGAAATTCAAAGGGTGCACAACT 59.294 39.130 20.43 13.36 0.00 3.16
5523 6479 4.051237 GAGAAATTCAAAGGGTGCACAAC 58.949 43.478 20.43 11.03 0.00 3.32
5524 6480 3.703556 TGAGAAATTCAAAGGGTGCACAA 59.296 39.130 20.43 3.03 31.34 3.33
5525 6481 3.295093 TGAGAAATTCAAAGGGTGCACA 58.705 40.909 20.43 0.00 31.34 4.57
5526 6482 4.051237 GTTGAGAAATTCAAAGGGTGCAC 58.949 43.478 8.80 8.80 46.85 4.57
5527 6483 3.960102 AGTTGAGAAATTCAAAGGGTGCA 59.040 39.130 0.00 0.00 46.85 4.57
5528 6484 4.590850 AGTTGAGAAATTCAAAGGGTGC 57.409 40.909 0.00 0.00 46.85 5.01
5529 6485 6.003950 TCCTAGTTGAGAAATTCAAAGGGTG 58.996 40.000 0.00 0.00 46.85 4.61
5530 6486 6.004574 GTCCTAGTTGAGAAATTCAAAGGGT 58.995 40.000 0.00 0.00 46.85 4.34
5531 6487 6.003950 TGTCCTAGTTGAGAAATTCAAAGGG 58.996 40.000 0.00 3.96 46.85 3.95
5532 6488 7.510549 TTGTCCTAGTTGAGAAATTCAAAGG 57.489 36.000 0.00 2.60 46.85 3.11
5550 6506 9.793259 ATGACCGATATTATGTTTATTTGTCCT 57.207 29.630 0.00 0.00 0.00 3.85
5645 6601 4.930405 TGAAACTACGAACACACAACTGAA 59.070 37.500 0.00 0.00 0.00 3.02
5655 6611 3.071479 GAGCCCAATGAAACTACGAACA 58.929 45.455 0.00 0.00 0.00 3.18
5742 6699 8.628630 AGAGAAAGAGGAGAAAAATGTTTAGG 57.371 34.615 0.00 0.00 0.00 2.69
5927 6884 1.139853 CAGGGCATAGAAGGAGGTGTC 59.860 57.143 0.00 0.00 0.00 3.67
6287 7244 0.905357 AGTTAGGTTCCGCATGAGCT 59.095 50.000 0.00 0.00 39.10 4.09
6308 7265 2.438075 GCTGCTGAGCCTCTTGGG 60.438 66.667 0.23 0.00 39.57 4.12
6317 7274 3.624410 TGTTATGCACATAAGCTGCTGAG 59.376 43.478 1.35 0.00 34.27 3.35
6349 7306 1.595311 ACCATTAGCCACCTCCATGA 58.405 50.000 0.00 0.00 0.00 3.07
6624 7584 1.647545 CGACGGCATCAAGGCATTGT 61.648 55.000 11.36 0.00 44.47 2.71
6628 7588 2.434185 GTCGACGGCATCAAGGCA 60.434 61.111 0.00 0.00 44.47 4.75
6629 7589 1.741770 AAGTCGACGGCATCAAGGC 60.742 57.895 10.46 0.00 39.93 4.35
6645 7606 5.853282 GGTTTTCATTCATTCTCACGACAAG 59.147 40.000 0.00 0.00 0.00 3.16
6651 7612 5.613358 AGACGGTTTTCATTCATTCTCAC 57.387 39.130 0.00 0.00 0.00 3.51
6677 7639 3.187700 ACAGATCGATCGGCTACAAAAC 58.812 45.455 23.09 0.00 0.00 2.43
6889 7851 3.446516 ACAGACTAGTCGGGACCAATAAC 59.553 47.826 24.12 0.00 34.09 1.89
6891 7853 3.021695 CACAGACTAGTCGGGACCAATA 58.978 50.000 24.12 0.00 34.09 1.90
6892 7854 1.825474 CACAGACTAGTCGGGACCAAT 59.175 52.381 24.12 2.26 34.09 3.16
6895 7857 1.542492 TTCACAGACTAGTCGGGACC 58.458 55.000 24.12 0.00 34.09 4.46
6897 7859 3.280295 GAGATTCACAGACTAGTCGGGA 58.720 50.000 24.12 18.54 34.09 5.14
6898 7860 3.017442 TGAGATTCACAGACTAGTCGGG 58.983 50.000 24.12 18.82 34.09 5.14
6899 7861 4.156922 AGTTGAGATTCACAGACTAGTCGG 59.843 45.833 19.82 19.82 34.09 4.79
6900 7862 5.303747 AGTTGAGATTCACAGACTAGTCG 57.696 43.478 17.07 13.93 34.09 4.18
7002 8025 1.602327 AACGAAGGCGACCCCTAGTC 61.602 60.000 0.00 0.00 45.62 2.59
7003 8026 1.190178 AAACGAAGGCGACCCCTAGT 61.190 55.000 0.00 0.00 45.62 2.57
7004 8027 0.739813 CAAACGAAGGCGACCCCTAG 60.740 60.000 0.00 0.00 45.62 3.02
7005 8028 1.294138 CAAACGAAGGCGACCCCTA 59.706 57.895 0.00 0.00 45.62 3.53
7007 8030 3.053896 CCAAACGAAGGCGACCCC 61.054 66.667 0.00 0.00 41.64 4.95
7008 8031 2.281276 ACCAAACGAAGGCGACCC 60.281 61.111 0.00 0.00 41.64 4.46
7009 8032 0.953960 ATGACCAAACGAAGGCGACC 60.954 55.000 0.00 0.00 41.64 4.79
7010 8033 1.717194 TATGACCAAACGAAGGCGAC 58.283 50.000 0.00 0.00 41.64 5.19
7011 8034 2.684001 ATATGACCAAACGAAGGCGA 57.316 45.000 0.00 0.00 41.64 5.54
7145 8199 4.336433 CAGCATTTCGTATCCATCCTTTGT 59.664 41.667 0.00 0.00 0.00 2.83
7173 8227 5.516044 TGAGCTAGTAGAAGTTGGGTGATA 58.484 41.667 0.00 0.00 0.00 2.15
7178 8232 4.810191 AACTGAGCTAGTAGAAGTTGGG 57.190 45.455 0.00 0.00 39.18 4.12
7181 8235 4.458295 TGCGTAACTGAGCTAGTAGAAGTT 59.542 41.667 14.19 14.19 39.18 2.66
7183 8237 4.617808 TGCGTAACTGAGCTAGTAGAAG 57.382 45.455 0.00 0.00 39.18 2.85
7184 8238 4.670992 CGTTGCGTAACTGAGCTAGTAGAA 60.671 45.833 14.52 0.00 39.18 2.10
7186 8240 3.099362 CGTTGCGTAACTGAGCTAGTAG 58.901 50.000 14.52 0.00 39.18 2.57
7241 8310 0.790207 CAGCGTGCTTGTGTAATCGT 59.210 50.000 0.00 0.00 0.00 3.73
7251 8320 1.374758 GACTGTAGGCAGCGTGCTT 60.375 57.895 4.77 5.19 46.30 3.91
7280 8349 4.607584 ACTCCTCCCTCTGATCTATCTGAT 59.392 45.833 0.00 0.00 38.27 2.90
7371 8440 2.305607 GGTGGCCATGTACCTCCCA 61.306 63.158 9.72 0.00 35.24 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.