Multiple sequence alignment - TraesCS4D01G230600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G230600 chr4D 100.000 4655 0 0 1 4655 390596585 390601239 0.000000e+00 8597.0
1 TraesCS4D01G230600 chr4A 89.099 3440 161 82 643 3941 72293471 72296837 0.000000e+00 4078.0
2 TraesCS4D01G230600 chr4A 93.501 677 29 8 3986 4655 72296840 72297508 0.000000e+00 992.0
3 TraesCS4D01G230600 chr4A 87.160 514 19 11 7 511 72292568 72293043 1.470000e-149 540.0
4 TraesCS4D01G230600 chr4B 88.230 2107 122 63 1820 3869 480591202 480593239 0.000000e+00 2401.0
5 TraesCS4D01G230600 chr4B 87.892 2106 122 61 2033 4044 480591374 480593440 0.000000e+00 2353.0
6 TraesCS4D01G230600 chr4B 88.808 1376 49 40 512 1836 480589857 480591178 0.000000e+00 1591.0
7 TraesCS4D01G230600 chr4B 95.492 599 26 1 4058 4655 480593510 480594108 0.000000e+00 955.0
8 TraesCS4D01G230600 chr4B 85.271 516 18 18 22 512 480589346 480589828 3.260000e-131 479.0
9 TraesCS4D01G230600 chr6B 84.022 363 41 12 1147 1496 84360283 84360641 2.680000e-87 333.0
10 TraesCS4D01G230600 chr6B 83.417 199 27 5 1547 1742 527043564 527043759 3.700000e-41 180.0
11 TraesCS4D01G230600 chr6B 87.654 81 10 0 1347 1427 527042620 527042700 1.380000e-15 95.3
12 TraesCS4D01G230600 chr2B 83.889 360 42 9 1149 1497 61103530 61103884 3.470000e-86 329.0
13 TraesCS4D01G230600 chr2B 81.016 374 45 20 1147 1497 374241236 374240866 1.650000e-69 274.0
14 TraesCS4D01G230600 chr5B 81.818 363 39 12 1147 1497 14756749 14756402 3.550000e-71 279.0
15 TraesCS4D01G230600 chr5B 85.572 201 25 4 1547 1745 367212635 367212437 1.700000e-49 207.0
16 TraesCS4D01G230600 chr5D 83.333 222 33 4 1547 1766 317453036 317452817 7.900000e-48 202.0
17 TraesCS4D01G230600 chr5A 83.333 222 33 4 1547 1766 412104199 412103980 7.900000e-48 202.0
18 TraesCS4D01G230600 chr6A 83.920 199 26 5 1547 1742 491027842 491028037 7.950000e-43 185.0
19 TraesCS4D01G230600 chr6A 87.654 81 10 0 1347 1427 491027083 491027163 1.380000e-15 95.3
20 TraesCS4D01G230600 chr6D 82.673 202 29 5 1547 1745 351970556 351970358 1.720000e-39 174.0
21 TraesCS4D01G230600 chr6D 88.889 81 9 0 1347 1427 351971288 351971208 2.960000e-17 100.0
22 TraesCS4D01G230600 chrUn 82.199 191 32 2 1553 1742 20367270 20367459 3.730000e-36 163.0
23 TraesCS4D01G230600 chr1D 86.250 80 11 0 1344 1423 282135995 282136074 2.310000e-13 87.9
24 TraesCS4D01G230600 chr7B 97.222 36 1 0 3197 3232 581373601 581373566 1.400000e-05 62.1
25 TraesCS4D01G230600 chr7A 97.143 35 1 0 3198 3232 620370571 620370537 5.030000e-05 60.2
26 TraesCS4D01G230600 chr7A 97.143 35 1 0 3198 3232 620487726 620487760 5.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G230600 chr4D 390596585 390601239 4654 False 8597.0 8597 100.0000 1 4655 1 chr4D.!!$F1 4654
1 TraesCS4D01G230600 chr4A 72292568 72297508 4940 False 1870.0 4078 89.9200 7 4655 3 chr4A.!!$F1 4648
2 TraesCS4D01G230600 chr4B 480589346 480594108 4762 False 1555.8 2401 89.1386 22 4655 5 chr4B.!!$F1 4633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 1260 0.250209 CGGCCTAGGAGTAGTCGCTA 60.250 60.000 14.75 0.0 0.00 4.26 F
1457 1867 1.142870 TCCCTTTACTGCACTGCACTT 59.857 47.619 0.00 0.0 33.79 3.16 F
1927 2385 0.630673 TGGGGCTTCTGGCATAATGT 59.369 50.000 0.00 0.0 44.01 2.71 F
2558 3038 0.816825 CAACGGGCATGCAGATAGCT 60.817 55.000 21.36 0.0 45.94 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2213 0.100682 ATCGATCACGCGCAGTAAGT 59.899 50.0 5.73 0.00 39.58 2.24 R
2778 3288 0.471022 AAAGTGGACGCCCCCATTTT 60.471 50.0 6.67 6.67 40.07 1.82 R
3151 3674 0.865218 CGCAACGCAACACACAACAT 60.865 50.0 0.00 0.00 0.00 2.71 R
4293 4942 1.006825 TTGATGCCGTCGACTTGTCG 61.007 55.0 14.70 15.98 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.193334 CGAGGTGATGCGAGCGGA 62.193 66.667 0.00 0.00 0.00 5.54
20 21 2.279120 GAGGTGATGCGAGCGGAG 60.279 66.667 0.00 0.00 0.00 4.63
86 91 1.399714 CCGCTACATACTCACTCCCA 58.600 55.000 0.00 0.00 0.00 4.37
87 92 1.067212 CCGCTACATACTCACTCCCAC 59.933 57.143 0.00 0.00 0.00 4.61
88 93 1.749063 CGCTACATACTCACTCCCACA 59.251 52.381 0.00 0.00 0.00 4.17
89 94 2.479730 CGCTACATACTCACTCCCACAC 60.480 54.545 0.00 0.00 0.00 3.82
90 95 2.479730 GCTACATACTCACTCCCACACG 60.480 54.545 0.00 0.00 0.00 4.49
135 140 2.305052 AGCTACAAAACCTACCTCACCC 59.695 50.000 0.00 0.00 0.00 4.61
168 173 4.035102 GGGGCCCCTGTCTGTGTC 62.035 72.222 35.49 1.84 0.00 3.67
169 174 4.394712 GGGCCCCTGTCTGTGTCG 62.395 72.222 12.23 0.00 0.00 4.35
170 175 4.394712 GGCCCCTGTCTGTGTCGG 62.395 72.222 0.00 0.00 0.00 4.79
171 176 4.394712 GCCCCTGTCTGTGTCGGG 62.395 72.222 0.00 0.00 36.78 5.14
172 177 4.394712 CCCCTGTCTGTGTCGGGC 62.395 72.222 0.00 0.00 35.29 6.13
173 178 3.314331 CCCTGTCTGTGTCGGGCT 61.314 66.667 0.00 0.00 0.00 5.19
262 267 2.588314 CTGATGGCAGCGCTCCTC 60.588 66.667 21.36 16.86 34.95 3.71
270 275 1.736586 CAGCGCTCCTCGGAGTAAT 59.263 57.895 7.13 0.00 43.70 1.89
377 390 4.323477 CGCCTCGTTTGGACCCCA 62.323 66.667 0.00 0.00 0.00 4.96
501 535 1.068127 ACGTGCCGTTTGTACTCTTCT 59.932 47.619 0.00 0.00 36.35 2.85
512 546 6.398918 GTTTGTACTCTTCTTCCTCATGCTA 58.601 40.000 0.00 0.00 0.00 3.49
513 547 6.798427 TTGTACTCTTCTTCCTCATGCTAT 57.202 37.500 0.00 0.00 0.00 2.97
514 548 6.154203 TGTACTCTTCTTCCTCATGCTATG 57.846 41.667 0.00 0.00 0.00 2.23
524 588 2.810274 CCTCATGCTATGTGTATGTGGC 59.190 50.000 0.00 0.00 42.36 5.01
555 619 2.545952 GCAGTATCAGTATGGACCGGTG 60.546 54.545 14.63 0.00 36.16 4.94
617 945 9.365311 CATTCAACGGTACAATAATAATCGAAC 57.635 33.333 0.00 0.00 0.00 3.95
618 946 8.476657 TTCAACGGTACAATAATAATCGAACA 57.523 30.769 0.00 0.00 0.00 3.18
619 947 8.122306 TCAACGGTACAATAATAATCGAACAG 57.878 34.615 0.00 0.00 0.00 3.16
620 948 7.975058 TCAACGGTACAATAATAATCGAACAGA 59.025 33.333 0.00 0.00 0.00 3.41
621 949 8.597227 CAACGGTACAATAATAATCGAACAGAA 58.403 33.333 0.00 0.00 0.00 3.02
622 950 8.882415 ACGGTACAATAATAATCGAACAGAAT 57.118 30.769 0.00 0.00 0.00 2.40
623 951 8.975439 ACGGTACAATAATAATCGAACAGAATC 58.025 33.333 0.00 0.00 0.00 2.52
624 952 8.974408 CGGTACAATAATAATCGAACAGAATCA 58.026 33.333 0.00 0.00 0.00 2.57
661 1000 3.366985 GGGTAGGGTTTTGATTTGCGAAG 60.367 47.826 0.00 0.00 0.00 3.79
704 1051 4.149598 GGTTGGGTGGGATATATTTGGTC 58.850 47.826 0.00 0.00 0.00 4.02
900 1260 0.250209 CGGCCTAGGAGTAGTCGCTA 60.250 60.000 14.75 0.00 0.00 4.26
954 1321 1.374252 GCGCCCACCACGATATAGG 60.374 63.158 0.00 0.00 0.00 2.57
1305 1709 3.741476 GCGCCTGCCTCTGTTTGG 61.741 66.667 0.00 0.00 33.98 3.28
1443 1853 3.763897 GTGAGTAAACATGGCATCCCTTT 59.236 43.478 0.00 0.00 0.00 3.11
1447 1857 4.949856 AGTAAACATGGCATCCCTTTACTG 59.050 41.667 22.07 5.79 37.80 2.74
1457 1867 1.142870 TCCCTTTACTGCACTGCACTT 59.857 47.619 0.00 0.00 33.79 3.16
1458 1868 1.267806 CCCTTTACTGCACTGCACTTG 59.732 52.381 0.00 0.00 33.79 3.16
1459 1869 1.949525 CCTTTACTGCACTGCACTTGT 59.050 47.619 0.00 0.00 33.79 3.16
1460 1870 2.358898 CCTTTACTGCACTGCACTTGTT 59.641 45.455 0.00 0.00 33.79 2.83
1461 1871 3.365832 CTTTACTGCACTGCACTTGTTG 58.634 45.455 0.00 0.00 33.79 3.33
1462 1872 1.308047 TACTGCACTGCACTTGTTGG 58.692 50.000 0.00 0.00 33.79 3.77
1491 1907 3.567585 CCGATGTAATGCAGAGAGAGAGA 59.432 47.826 0.00 0.00 0.00 3.10
1492 1908 4.320421 CCGATGTAATGCAGAGAGAGAGAG 60.320 50.000 0.00 0.00 0.00 3.20
1493 1909 4.514816 CGATGTAATGCAGAGAGAGAGAGA 59.485 45.833 0.00 0.00 0.00 3.10
1494 1910 5.334337 CGATGTAATGCAGAGAGAGAGAGAG 60.334 48.000 0.00 0.00 0.00 3.20
1495 1911 5.109500 TGTAATGCAGAGAGAGAGAGAGA 57.891 43.478 0.00 0.00 0.00 3.10
1496 1912 5.125356 TGTAATGCAGAGAGAGAGAGAGAG 58.875 45.833 0.00 0.00 0.00 3.20
1511 1927 1.606668 AGAGAGCGGCGAGAGAATTAG 59.393 52.381 12.98 0.00 0.00 1.73
1533 1949 1.851658 ACAAACTTTGGCATTGCGAC 58.148 45.000 6.47 0.00 34.12 5.19
1536 1952 2.504681 CTTTGGCATTGCGACCGC 60.505 61.111 7.53 7.53 42.35 5.68
1711 2127 2.663196 CTCTGGTTCGACCCCACC 59.337 66.667 0.00 0.00 37.50 4.61
1796 2212 3.681034 CGCTCTCATCTCCACCAATCTTT 60.681 47.826 0.00 0.00 0.00 2.52
1797 2213 4.442052 CGCTCTCATCTCCACCAATCTTTA 60.442 45.833 0.00 0.00 0.00 1.85
1798 2214 4.813697 GCTCTCATCTCCACCAATCTTTAC 59.186 45.833 0.00 0.00 0.00 2.01
1800 2216 6.627087 TCTCATCTCCACCAATCTTTACTT 57.373 37.500 0.00 0.00 0.00 2.24
1801 2217 7.633772 GCTCTCATCTCCACCAATCTTTACTTA 60.634 40.741 0.00 0.00 0.00 2.24
1802 2218 7.556844 TCTCATCTCCACCAATCTTTACTTAC 58.443 38.462 0.00 0.00 0.00 2.34
1803 2219 7.400339 TCTCATCTCCACCAATCTTTACTTACT 59.600 37.037 0.00 0.00 0.00 2.24
1804 2220 7.331026 TCATCTCCACCAATCTTTACTTACTG 58.669 38.462 0.00 0.00 0.00 2.74
1805 2221 5.488341 TCTCCACCAATCTTTACTTACTGC 58.512 41.667 0.00 0.00 0.00 4.40
1806 2222 4.250464 TCCACCAATCTTTACTTACTGCG 58.750 43.478 0.00 0.00 0.00 5.18
1808 2224 2.671396 ACCAATCTTTACTTACTGCGCG 59.329 45.455 0.00 0.00 0.00 6.86
1809 2225 2.671396 CCAATCTTTACTTACTGCGCGT 59.329 45.455 8.43 6.51 0.00 6.01
1865 2323 1.270625 CGGCCTGAACCTTGAACAGTA 60.271 52.381 0.00 0.00 0.00 2.74
1868 2326 3.253432 GGCCTGAACCTTGAACAGTAAAG 59.747 47.826 0.00 0.00 0.00 1.85
1869 2327 3.883489 GCCTGAACCTTGAACAGTAAAGT 59.117 43.478 0.00 0.00 0.00 2.66
1924 2382 0.704076 AAGTGGGGCTTCTGGCATAA 59.296 50.000 0.00 0.00 44.01 1.90
1925 2383 0.929244 AGTGGGGCTTCTGGCATAAT 59.071 50.000 0.00 0.00 44.01 1.28
1926 2384 1.035139 GTGGGGCTTCTGGCATAATG 58.965 55.000 0.00 0.00 44.01 1.90
1927 2385 0.630673 TGGGGCTTCTGGCATAATGT 59.369 50.000 0.00 0.00 44.01 2.71
1961 2419 3.947910 TTAGCTGTAACAACCGTAGCT 57.052 42.857 0.00 0.00 45.74 3.32
1964 2422 4.261578 AGCTGTAACAACCGTAGCTAAA 57.738 40.909 0.00 0.00 42.45 1.85
1980 2442 6.360148 CGTAGCTAAATTACCTGACTTCGATC 59.640 42.308 0.00 0.00 0.00 3.69
2010 2472 3.708403 TGCTCCAGGGCTATCATTATG 57.292 47.619 0.00 0.00 0.00 1.90
2025 2487 4.476297 TCATTATGCAGCCAGGATCAATT 58.524 39.130 0.00 0.00 0.00 2.32
2029 2491 2.250031 TGCAGCCAGGATCAATTTTGT 58.750 42.857 0.00 0.00 0.00 2.83
2030 2492 3.429492 TGCAGCCAGGATCAATTTTGTA 58.571 40.909 0.00 0.00 0.00 2.41
2031 2493 3.444742 TGCAGCCAGGATCAATTTTGTAG 59.555 43.478 0.00 0.00 0.00 2.74
2033 2495 4.201990 GCAGCCAGGATCAATTTTGTAGAG 60.202 45.833 0.00 0.00 0.00 2.43
2035 2497 3.633986 GCCAGGATCAATTTTGTAGAGGG 59.366 47.826 0.00 0.00 0.00 4.30
2036 2498 4.860022 CCAGGATCAATTTTGTAGAGGGT 58.140 43.478 0.00 0.00 0.00 4.34
2037 2499 5.264395 CCAGGATCAATTTTGTAGAGGGTT 58.736 41.667 0.00 0.00 0.00 4.11
2038 2500 5.716703 CCAGGATCAATTTTGTAGAGGGTTT 59.283 40.000 0.00 0.00 0.00 3.27
2039 2501 6.211384 CCAGGATCAATTTTGTAGAGGGTTTT 59.789 38.462 0.00 0.00 0.00 2.43
2040 2502 7.396055 CCAGGATCAATTTTGTAGAGGGTTTTA 59.604 37.037 0.00 0.00 0.00 1.52
2041 2503 8.802267 CAGGATCAATTTTGTAGAGGGTTTTAA 58.198 33.333 0.00 0.00 0.00 1.52
2042 2504 9.374711 AGGATCAATTTTGTAGAGGGTTTTAAA 57.625 29.630 0.00 0.00 0.00 1.52
2043 2505 9.419297 GGATCAATTTTGTAGAGGGTTTTAAAC 57.581 33.333 0.00 0.00 0.00 2.01
2044 2506 9.124807 GATCAATTTTGTAGAGGGTTTTAAACG 57.875 33.333 1.52 0.00 0.00 3.60
2157 2619 7.170320 ACTTTGTACATACAAGTTCCAAGTACG 59.830 37.037 5.74 0.00 45.77 3.67
2194 2656 7.221452 GCAAATTAGTGATCCTTTAAGCACATG 59.779 37.037 0.00 0.00 33.85 3.21
2197 2659 5.633830 AGTGATCCTTTAAGCACATGTTG 57.366 39.130 0.00 0.00 33.85 3.33
2199 2661 5.769662 AGTGATCCTTTAAGCACATGTTGAA 59.230 36.000 0.00 0.00 33.85 2.69
2201 2663 6.922957 GTGATCCTTTAAGCACATGTTGAAAA 59.077 34.615 0.00 0.00 0.00 2.29
2202 2664 7.437862 GTGATCCTTTAAGCACATGTTGAAAAA 59.562 33.333 0.00 0.00 0.00 1.94
2254 2716 8.076178 ACGATCTTTGTGTCCTTTGATAAAAAG 58.924 33.333 0.00 0.00 37.94 2.27
2300 2762 3.199727 TGCTCTATGCCATGGTAGTTCAA 59.800 43.478 14.67 0.00 42.00 2.69
2357 2822 6.436847 AGCAAGATAGATAATCTCTGCTGCTA 59.563 38.462 16.62 0.00 46.24 3.49
2412 2892 2.029560 GCTGCCTCTTTCCCTTTCTTTG 60.030 50.000 0.00 0.00 0.00 2.77
2450 2930 6.095160 ACATGATTGAGAGAAATTGGCTCTTC 59.905 38.462 11.21 7.01 42.50 2.87
2558 3038 0.816825 CAACGGGCATGCAGATAGCT 60.817 55.000 21.36 0.00 45.94 3.32
2581 3061 1.149174 CCCGCCAGTATGCCTCAAT 59.851 57.895 0.00 0.00 31.97 2.57
2612 3092 4.493220 GCTTGGAAGAAGAAACATCGATCG 60.493 45.833 9.36 9.36 0.00 3.69
2623 3103 7.015226 AGAAACATCGATCGCAATATCAAAA 57.985 32.000 11.09 0.00 0.00 2.44
2648 3132 8.050316 ACCATTTATTTCTCCACCTGATCTAT 57.950 34.615 0.00 0.00 0.00 1.98
2672 3157 5.571791 TCAGATCAGGATCCATTTGCATA 57.428 39.130 15.82 0.00 38.58 3.14
2683 3168 2.223479 CCATTTGCATAGCCCGTACAAC 60.223 50.000 0.00 0.00 0.00 3.32
2707 3217 2.345876 TCACACAGTCACACACACTTG 58.654 47.619 0.00 0.00 0.00 3.16
2710 3220 1.739466 CACAGTCACACACACTTGCTT 59.261 47.619 0.00 0.00 0.00 3.91
2719 3229 3.561310 ACACACACTTGCTTACAGTCATG 59.439 43.478 0.00 0.00 0.00 3.07
2778 3288 4.016444 GGGTGAATAAAGTTGGCATGAGA 58.984 43.478 0.00 0.00 0.00 3.27
2793 3303 1.001393 GAGAAAATGGGGGCGTCCA 60.001 57.895 9.07 2.09 41.60 4.02
2849 3359 3.129813 GCCTGAGCATTCATTCATCACAA 59.870 43.478 0.00 0.00 39.53 3.33
2936 3453 3.661648 ACCTGCTTTCCCCGCCAT 61.662 61.111 0.00 0.00 0.00 4.40
3002 3519 1.209504 TGATGGGGAAGAAAGCTACCG 59.790 52.381 0.00 0.00 0.00 4.02
3005 3528 1.814169 GGGAAGAAAGCTACCGCCG 60.814 63.158 0.00 0.00 36.60 6.46
3008 3531 3.248446 AAGAAAGCTACCGCCGCCA 62.248 57.895 0.00 0.00 36.60 5.69
3046 3569 0.874390 TTTCACATGAGCCAACTCGC 59.126 50.000 0.00 0.00 46.69 5.03
3076 3599 1.169661 TTCACCGTTCACATGCCCAC 61.170 55.000 0.00 0.00 0.00 4.61
3109 3632 4.472286 AGTTTTCACCGCAAATATGTTCG 58.528 39.130 0.00 0.00 0.00 3.95
3125 3648 2.442561 TTCGCGTGAATGTGCTGTGC 62.443 55.000 7.45 0.00 0.00 4.57
3149 3672 2.583024 TGCTTGGATTGATGGTGTGA 57.417 45.000 0.00 0.00 0.00 3.58
3151 3674 3.229293 TGCTTGGATTGATGGTGTGAAA 58.771 40.909 0.00 0.00 0.00 2.69
3154 3677 4.322198 GCTTGGATTGATGGTGTGAAATGT 60.322 41.667 0.00 0.00 0.00 2.71
3573 4115 2.305607 GGTGGCCATGTACCTCCCA 61.306 63.158 9.72 0.00 35.24 4.37
3658 4200 1.422024 CGGACTCCTCCCTCTGATCTA 59.578 57.143 0.00 0.00 31.93 1.98
3664 4206 4.607584 ACTCCTCCCTCTGATCTATCTGAT 59.392 45.833 0.00 0.00 38.27 2.90
3693 4235 1.374758 GACTGTAGGCAGCGTGCTT 60.375 57.895 4.77 5.19 46.30 3.91
3703 4245 0.790207 CAGCGTGCTTGTGTAATCGT 59.210 50.000 0.00 0.00 0.00 3.73
3719 4267 4.340894 AATCGTGTCATGCATGTGTAAC 57.659 40.909 25.43 16.61 35.64 2.50
3758 4309 3.099362 CGTTGCGTAACTGAGCTAGTAG 58.901 50.000 14.52 0.00 39.18 2.57
3759 4310 3.181513 CGTTGCGTAACTGAGCTAGTAGA 60.182 47.826 14.52 0.00 39.18 2.59
3760 4311 4.670992 CGTTGCGTAACTGAGCTAGTAGAA 60.671 45.833 14.52 0.00 39.18 2.10
3761 4312 4.617808 TGCGTAACTGAGCTAGTAGAAG 57.382 45.455 0.00 0.00 39.18 2.85
3762 4313 4.008330 TGCGTAACTGAGCTAGTAGAAGT 58.992 43.478 0.00 0.00 39.18 3.01
3763 4314 4.458295 TGCGTAACTGAGCTAGTAGAAGTT 59.542 41.667 14.19 14.19 39.18 2.66
3764 4315 4.794246 GCGTAACTGAGCTAGTAGAAGTTG 59.206 45.833 17.17 7.90 39.18 3.16
3766 4317 4.810191 AACTGAGCTAGTAGAAGTTGGG 57.190 45.455 0.00 0.00 39.18 4.12
3769 4320 3.764434 CTGAGCTAGTAGAAGTTGGGTGA 59.236 47.826 0.00 0.00 0.00 4.02
3770 4321 4.353777 TGAGCTAGTAGAAGTTGGGTGAT 58.646 43.478 0.00 0.00 0.00 3.06
3771 4322 5.516044 TGAGCTAGTAGAAGTTGGGTGATA 58.484 41.667 0.00 0.00 0.00 2.15
3799 4355 4.336433 CAGCATTTCGTATCCATCCTTTGT 59.664 41.667 0.00 0.00 0.00 2.83
3937 4524 3.053896 CCAAACGAAGGCGACCCC 61.054 66.667 0.00 0.00 41.64 4.95
3939 4526 1.294138 CAAACGAAGGCGACCCCTA 59.706 57.895 0.00 0.00 45.62 3.53
3940 4527 0.739813 CAAACGAAGGCGACCCCTAG 60.740 60.000 0.00 0.00 45.62 3.02
3942 4529 1.602327 AACGAAGGCGACCCCTAGTC 61.602 60.000 0.00 0.00 45.62 2.59
3943 4530 2.050350 CGAAGGCGACCCCTAGTCA 61.050 63.158 0.00 0.00 45.62 3.41
3944 4531 1.516423 GAAGGCGACCCCTAGTCAC 59.484 63.158 0.00 0.00 45.62 3.67
3945 4532 1.957765 GAAGGCGACCCCTAGTCACC 61.958 65.000 0.00 0.00 45.62 4.02
4044 4636 5.303747 AGTTGAGATTCACAGACTAGTCG 57.696 43.478 17.07 13.93 34.09 4.18
4047 4639 3.280295 GAGATTCACAGACTAGTCGGGA 58.720 50.000 24.12 18.54 34.09 5.14
4049 4641 1.542492 TTCACAGACTAGTCGGGACC 58.458 55.000 24.12 0.00 34.09 4.46
4050 4642 0.402887 TCACAGACTAGTCGGGACCA 59.597 55.000 24.12 4.99 34.09 4.02
4051 4643 1.202964 TCACAGACTAGTCGGGACCAA 60.203 52.381 24.12 4.87 34.09 3.67
4052 4644 1.825474 CACAGACTAGTCGGGACCAAT 59.175 52.381 24.12 2.26 34.09 3.16
4054 4646 3.446161 CACAGACTAGTCGGGACCAATAA 59.554 47.826 24.12 0.00 34.09 1.40
4055 4647 3.446516 ACAGACTAGTCGGGACCAATAAC 59.553 47.826 24.12 0.00 34.09 1.89
4267 4915 3.187700 ACAGATCGATCGGCTACAAAAC 58.812 45.455 23.09 0.00 0.00 2.43
4293 4942 5.613358 AGACGGTTTTCATTCATTCTCAC 57.387 39.130 0.00 0.00 0.00 3.51
4299 4948 5.853282 GGTTTTCATTCATTCTCACGACAAG 59.147 40.000 0.00 0.00 0.00 3.16
4315 4964 1.741770 AAGTCGACGGCATCAAGGC 60.742 57.895 10.46 0.00 39.93 4.35
4320 4970 1.647545 CGACGGCATCAAGGCATTGT 61.648 55.000 11.36 0.00 44.47 2.71
4595 5248 1.595311 ACCATTAGCCACCTCCATGA 58.405 50.000 0.00 0.00 0.00 3.07
4627 5280 3.624410 TGTTATGCACATAAGCTGCTGAG 59.376 43.478 1.35 0.00 34.27 3.35
4636 5289 2.438075 GCTGCTGAGCCTCTTGGG 60.438 66.667 0.23 0.00 39.57 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.193334 TCCGCTCGCATCACCTCG 62.193 66.667 0.00 0.00 0.00 4.63
3 4 2.279120 CTCCGCTCGCATCACCTC 60.279 66.667 0.00 0.00 0.00 3.85
4 5 4.521062 GCTCCGCTCGCATCACCT 62.521 66.667 0.00 0.00 0.00 4.00
5 6 4.819761 TGCTCCGCTCGCATCACC 62.820 66.667 0.00 0.00 31.40 4.02
17 18 1.900498 ACCTTTGCTGCTGTGCTCC 60.900 57.895 0.00 0.00 0.00 4.70
18 19 1.285023 CACCTTTGCTGCTGTGCTC 59.715 57.895 0.00 0.00 0.00 4.26
19 20 2.198287 CCACCTTTGCTGCTGTGCT 61.198 57.895 0.00 0.00 0.00 4.40
20 21 2.019897 AACCACCTTTGCTGCTGTGC 62.020 55.000 0.00 0.00 0.00 4.57
172 177 4.570663 GGATCCGACGGCCGACAG 62.571 72.222 35.90 19.56 41.76 3.51
245 250 2.588314 GAGGAGCGCTGCCATCAG 60.588 66.667 26.33 0.00 43.16 2.90
270 275 2.354003 GGAAATGTCTCGTCGGGGTTTA 60.354 50.000 0.00 0.00 0.00 2.01
377 390 2.374504 AGCCAGATGATCGGATGGATTT 59.625 45.455 12.65 0.00 34.82 2.17
381 394 0.683412 TGAGCCAGATGATCGGATGG 59.317 55.000 0.00 5.71 35.84 3.51
383 396 0.316522 CGTGAGCCAGATGATCGGAT 59.683 55.000 7.36 1.24 0.00 4.18
501 535 4.707105 CCACATACACATAGCATGAGGAA 58.293 43.478 0.00 0.00 33.69 3.36
512 546 0.036483 TCAGCACGCCACATACACAT 60.036 50.000 0.00 0.00 0.00 3.21
513 547 0.948623 GTCAGCACGCCACATACACA 60.949 55.000 0.00 0.00 0.00 3.72
514 548 0.948623 TGTCAGCACGCCACATACAC 60.949 55.000 0.00 0.00 0.00 2.90
590 654 8.651391 TCGATTATTATTGTACCGTTGAATGT 57.349 30.769 0.00 0.00 0.00 2.71
617 945 4.261741 CCACAACCTTTTCCAGTGATTCTG 60.262 45.833 0.00 0.00 43.27 3.02
618 946 3.891366 CCACAACCTTTTCCAGTGATTCT 59.109 43.478 0.00 0.00 32.14 2.40
619 947 3.005791 CCCACAACCTTTTCCAGTGATTC 59.994 47.826 0.00 0.00 32.14 2.52
620 948 2.965147 CCCACAACCTTTTCCAGTGATT 59.035 45.455 0.00 0.00 32.14 2.57
621 949 2.091333 ACCCACAACCTTTTCCAGTGAT 60.091 45.455 0.00 0.00 32.14 3.06
622 950 1.286553 ACCCACAACCTTTTCCAGTGA 59.713 47.619 0.00 0.00 32.14 3.41
623 951 1.775385 ACCCACAACCTTTTCCAGTG 58.225 50.000 0.00 0.00 0.00 3.66
624 952 2.158519 CCTACCCACAACCTTTTCCAGT 60.159 50.000 0.00 0.00 0.00 4.00
625 953 2.514803 CCTACCCACAACCTTTTCCAG 58.485 52.381 0.00 0.00 0.00 3.86
626 954 1.146152 CCCTACCCACAACCTTTTCCA 59.854 52.381 0.00 0.00 0.00 3.53
627 955 1.146359 ACCCTACCCACAACCTTTTCC 59.854 52.381 0.00 0.00 0.00 3.13
628 956 2.670019 ACCCTACCCACAACCTTTTC 57.330 50.000 0.00 0.00 0.00 2.29
629 957 3.408157 AAACCCTACCCACAACCTTTT 57.592 42.857 0.00 0.00 0.00 2.27
661 1000 0.458669 TTCTCTCGCCCCGTCATTAC 59.541 55.000 0.00 0.00 0.00 1.89
704 1051 1.434696 GCCTTGATTGCCGTGGATG 59.565 57.895 0.00 0.00 0.00 3.51
816 1168 1.604278 GGAGTTGCACCTCACAGTTTC 59.396 52.381 13.73 0.00 32.91 2.78
900 1260 0.249676 TCTCGCCTCGTCTCTAGTGT 59.750 55.000 0.00 0.00 0.00 3.55
935 1298 1.733041 CTATATCGTGGTGGGCGCG 60.733 63.158 0.00 0.00 0.00 6.86
939 1302 0.321671 CTGCCCTATATCGTGGTGGG 59.678 60.000 0.00 0.00 40.74 4.61
943 1306 0.109086 CGCTCTGCCCTATATCGTGG 60.109 60.000 0.00 0.00 0.00 4.94
956 1323 3.522731 CGACTCCCCTCCGCTCTG 61.523 72.222 0.00 0.00 0.00 3.35
1008 1391 4.394712 ACGGCCAAGAGGAAGCGG 62.395 66.667 2.24 0.00 36.89 5.52
1305 1709 0.673985 GGAGCCTGAAACCAACCAAC 59.326 55.000 0.00 0.00 0.00 3.77
1433 1839 1.098050 CAGTGCAGTAAAGGGATGCC 58.902 55.000 0.00 0.00 39.22 4.40
1434 1840 0.453390 GCAGTGCAGTAAAGGGATGC 59.547 55.000 11.09 0.00 40.40 3.91
1443 1853 1.134250 TCCAACAAGTGCAGTGCAGTA 60.134 47.619 25.30 6.31 41.77 2.74
1447 1857 1.135141 TGTTTCCAACAAGTGCAGTGC 60.135 47.619 8.58 8.58 38.72 4.40
1459 1869 3.570125 TGCATTACATCGGTTGTTTCCAA 59.430 39.130 0.00 0.00 39.87 3.53
1460 1870 3.149981 TGCATTACATCGGTTGTTTCCA 58.850 40.909 0.00 0.00 39.87 3.53
1461 1871 3.438781 TCTGCATTACATCGGTTGTTTCC 59.561 43.478 0.00 0.00 39.87 3.13
1462 1872 4.391830 TCTCTGCATTACATCGGTTGTTTC 59.608 41.667 0.00 0.00 39.87 2.78
1491 1907 1.606668 CTAATTCTCTCGCCGCTCTCT 59.393 52.381 0.00 0.00 0.00 3.10
1492 1908 1.335496 ACTAATTCTCTCGCCGCTCTC 59.665 52.381 0.00 0.00 0.00 3.20
1493 1909 1.394618 ACTAATTCTCTCGCCGCTCT 58.605 50.000 0.00 0.00 0.00 4.09
1494 1910 3.044286 GTTACTAATTCTCTCGCCGCTC 58.956 50.000 0.00 0.00 0.00 5.03
1495 1911 2.426024 TGTTACTAATTCTCTCGCCGCT 59.574 45.455 0.00 0.00 0.00 5.52
1496 1912 2.805845 TGTTACTAATTCTCTCGCCGC 58.194 47.619 0.00 0.00 0.00 6.53
1511 1927 3.181575 GTCGCAATGCCAAAGTTTGTTAC 59.818 43.478 14.36 4.50 0.00 2.50
1533 1949 3.466791 ATCTGCCGGAATCCAGCGG 62.467 63.158 10.02 10.02 0.00 5.52
1536 1952 0.533755 GGACATCTGCCGGAATCCAG 60.534 60.000 5.05 2.32 34.93 3.86
1711 2127 1.218316 GTAGCGGTGGAAGTCCTGG 59.782 63.158 0.00 0.00 36.82 4.45
1796 2212 0.728542 TCGATCACGCGCAGTAAGTA 59.271 50.000 5.73 0.00 39.58 2.24
1797 2213 0.100682 ATCGATCACGCGCAGTAAGT 59.899 50.000 5.73 0.00 39.58 2.24
1798 2214 0.772926 GATCGATCACGCGCAGTAAG 59.227 55.000 20.52 0.00 39.58 2.34
1800 2216 1.368850 CGATCGATCACGCGCAGTA 60.369 57.895 24.40 0.00 39.58 2.74
1801 2217 2.652179 CGATCGATCACGCGCAGT 60.652 61.111 24.40 3.19 39.58 4.40
1802 2218 2.352343 TCGATCGATCACGCGCAG 60.352 61.111 24.40 7.01 39.58 5.18
1803 2219 2.650917 GTCGATCGATCACGCGCA 60.651 61.111 22.50 0.00 39.58 6.09
1804 2220 2.650917 TGTCGATCGATCACGCGC 60.651 61.111 22.50 6.89 39.58 6.86
1805 2221 1.297672 AGTGTCGATCGATCACGCG 60.298 57.895 28.51 3.53 39.58 6.01
1806 2222 1.802300 GCAGTGTCGATCGATCACGC 61.802 60.000 28.51 28.08 39.58 5.34
1808 2224 1.845266 ATGCAGTGTCGATCGATCAC 58.155 50.000 28.20 28.20 0.00 3.06
1809 2225 2.463876 GAATGCAGTGTCGATCGATCA 58.536 47.619 22.50 17.37 0.00 2.92
1865 2323 7.010275 GTCTGAAGTTCTGAACTCGTTTACTTT 59.990 37.037 22.24 4.53 41.91 2.66
1868 2326 5.978322 AGTCTGAAGTTCTGAACTCGTTTAC 59.022 40.000 22.24 15.93 41.91 2.01
1869 2327 5.977725 CAGTCTGAAGTTCTGAACTCGTTTA 59.022 40.000 22.24 4.53 41.91 2.01
1948 2406 6.813152 GTCAGGTAATTTAGCTACGGTTGTTA 59.187 38.462 7.76 0.00 34.67 2.41
1953 2411 5.658468 GAAGTCAGGTAATTTAGCTACGGT 58.342 41.667 7.76 0.00 34.67 4.83
1980 2442 1.745864 CCTGGAGCAAGCAGAGCTG 60.746 63.158 0.00 0.00 43.58 4.24
2010 2472 3.696051 TCTACAAAATTGATCCTGGCTGC 59.304 43.478 0.00 0.00 0.00 5.25
2025 2487 6.347696 TCAGACGTTTAAAACCCTCTACAAA 58.652 36.000 0.00 0.00 0.00 2.83
2029 2491 6.527423 ACATTCAGACGTTTAAAACCCTCTA 58.473 36.000 0.00 0.00 0.00 2.43
2030 2492 5.374071 ACATTCAGACGTTTAAAACCCTCT 58.626 37.500 0.00 0.00 0.00 3.69
2031 2493 5.684550 ACATTCAGACGTTTAAAACCCTC 57.315 39.130 0.00 0.00 0.00 4.30
2033 2495 6.416750 CAGAAACATTCAGACGTTTAAAACCC 59.583 38.462 0.00 0.00 35.53 4.11
2035 2497 8.609478 TTCAGAAACATTCAGACGTTTAAAAC 57.391 30.769 0.00 0.00 35.53 2.43
2036 2498 9.796120 AATTCAGAAACATTCAGACGTTTAAAA 57.204 25.926 0.00 0.00 35.53 1.52
2126 2588 7.273712 TGGAACTTGTATGTACAAAGTACACA 58.726 34.615 11.74 8.25 44.67 3.72
2157 2619 5.712217 TCACTAATTTGCTACGTACATGC 57.288 39.130 0.00 0.00 0.00 4.06
2197 2659 6.922957 TGTGTCCTGTAAGCATTGAATTTTTC 59.077 34.615 0.00 0.00 0.00 2.29
2199 2661 6.040842 ACTGTGTCCTGTAAGCATTGAATTTT 59.959 34.615 0.00 0.00 0.00 1.82
2201 2663 5.072741 ACTGTGTCCTGTAAGCATTGAATT 58.927 37.500 0.00 0.00 0.00 2.17
2202 2664 4.655963 ACTGTGTCCTGTAAGCATTGAAT 58.344 39.130 0.00 0.00 0.00 2.57
2284 2746 3.947834 GCTAAGTTGAACTACCATGGCAT 59.052 43.478 13.04 0.00 0.00 4.40
2357 2822 6.607019 AGAGTACCTGAAGCTAGCTAATACT 58.393 40.000 19.70 19.00 0.00 2.12
2412 2892 4.264253 TCAATCATGTCATGAGGGTGAAC 58.736 43.478 19.86 0.00 43.53 3.18
2450 2930 7.099764 TGAGGAATCTGTAAGCTGTAAAGAAG 58.900 38.462 0.00 0.00 0.00 2.85
2558 3038 4.175337 GCATACTGGCGGGGCAGA 62.175 66.667 26.42 11.94 0.00 4.26
2581 3061 1.977854 TCTTCTTCCAAGCCAGCAGTA 59.022 47.619 0.00 0.00 0.00 2.74
2612 3092 9.598517 TGGAGAAATAAATGGTTTTGATATTGC 57.401 29.630 0.00 0.00 0.00 3.56
2623 3103 6.332976 AGATCAGGTGGAGAAATAAATGGT 57.667 37.500 0.00 0.00 0.00 3.55
2648 3132 4.602107 TGCAAATGGATCCTGATCTGAAA 58.398 39.130 14.23 0.00 37.92 2.69
2672 3157 1.271656 GTGTGAGTAGTTGTACGGGCT 59.728 52.381 0.00 0.00 33.97 5.19
2683 3168 3.116300 GTGTGTGTGACTGTGTGAGTAG 58.884 50.000 0.00 0.00 33.83 2.57
2707 3217 2.393271 AGGAGTGCATGACTGTAAGC 57.607 50.000 0.00 0.00 37.60 3.09
2710 3220 3.444034 GTGAGTAGGAGTGCATGACTGTA 59.556 47.826 0.00 0.00 33.83 2.74
2719 3229 1.613925 TGACTGTGTGAGTAGGAGTGC 59.386 52.381 0.00 0.00 33.83 4.40
2778 3288 0.471022 AAAGTGGACGCCCCCATTTT 60.471 50.000 6.67 6.67 40.07 1.82
2793 3303 5.476945 GTGGATGGATGGAAACTGTAAAAGT 59.523 40.000 0.00 0.00 42.60 2.66
2849 3359 2.727392 GCCATGGCCATGCACATGT 61.727 57.895 36.08 2.21 42.15 3.21
2936 3453 1.002430 GATCACACAGGACTTGCAGGA 59.998 52.381 1.40 0.00 0.00 3.86
3002 3519 2.335011 GTGAAAAGTGGTGGCGGC 59.665 61.111 0.00 0.00 0.00 6.53
3005 3528 1.358759 CACGGTGAAAAGTGGTGGC 59.641 57.895 0.74 0.00 34.93 5.01
3008 3531 1.027792 AACGCACGGTGAAAAGTGGT 61.028 50.000 13.29 0.00 38.68 4.16
3046 3569 2.135933 GAACGGTGAACCTGAACAGAG 58.864 52.381 3.19 0.00 0.00 3.35
3076 3599 2.812011 CGGTGAAAACTAGACTTTGGGG 59.188 50.000 0.00 0.00 0.00 4.96
3109 3632 1.441515 CAGCACAGCACATTCACGC 60.442 57.895 0.00 0.00 0.00 5.34
3125 3648 2.361119 CACCATCAATCCAAGCATCCAG 59.639 50.000 0.00 0.00 0.00 3.86
3149 3672 1.658095 GCAACGCAACACACAACATTT 59.342 42.857 0.00 0.00 0.00 2.32
3151 3674 0.865218 CGCAACGCAACACACAACAT 60.865 50.000 0.00 0.00 0.00 2.71
3557 4099 1.695114 CGATGGGAGGTACATGGCCA 61.695 60.000 8.56 8.56 0.00 5.36
3658 4200 3.118847 ACAGTCAGCAACGATCATCAGAT 60.119 43.478 0.00 0.00 37.13 2.90
3664 4206 1.404181 GCCTACAGTCAGCAACGATCA 60.404 52.381 0.00 0.00 0.00 2.92
3693 4235 3.124976 CACATGCATGACACGATTACACA 59.875 43.478 32.75 0.00 0.00 3.72
3703 4245 2.760374 TCACGTTACACATGCATGACA 58.240 42.857 32.75 13.89 0.00 3.58
3719 4267 4.326205 CAACGATGAAGCTACAAATCACG 58.674 43.478 0.00 0.00 0.00 4.35
3758 4309 4.072131 TGCTGAACTTATCACCCAACTTC 58.928 43.478 0.00 0.00 33.47 3.01
3759 4310 4.098914 TGCTGAACTTATCACCCAACTT 57.901 40.909 0.00 0.00 33.47 2.66
3760 4311 3.788227 TGCTGAACTTATCACCCAACT 57.212 42.857 0.00 0.00 33.47 3.16
3761 4312 5.391312 AAATGCTGAACTTATCACCCAAC 57.609 39.130 0.00 0.00 33.47 3.77
3762 4313 4.155826 CGAAATGCTGAACTTATCACCCAA 59.844 41.667 0.00 0.00 33.47 4.12
3763 4314 3.689161 CGAAATGCTGAACTTATCACCCA 59.311 43.478 0.00 0.00 33.47 4.51
3764 4315 3.689649 ACGAAATGCTGAACTTATCACCC 59.310 43.478 0.00 0.00 33.47 4.61
3766 4317 6.257849 TGGATACGAAATGCTGAACTTATCAC 59.742 38.462 0.00 0.00 42.51 3.06
3769 4320 6.428159 GGATGGATACGAAATGCTGAACTTAT 59.572 38.462 0.00 0.00 42.51 1.73
3770 4321 5.758296 GGATGGATACGAAATGCTGAACTTA 59.242 40.000 0.00 0.00 42.51 2.24
3771 4322 4.576463 GGATGGATACGAAATGCTGAACTT 59.424 41.667 0.00 0.00 42.51 2.66
3937 4524 3.608506 CGTTCAATCGTTCTGGTGACTAG 59.391 47.826 0.00 0.00 0.00 2.57
3938 4525 3.253921 TCGTTCAATCGTTCTGGTGACTA 59.746 43.478 0.00 0.00 0.00 2.59
3939 4526 2.035449 TCGTTCAATCGTTCTGGTGACT 59.965 45.455 0.00 0.00 0.00 3.41
3940 4527 2.400399 TCGTTCAATCGTTCTGGTGAC 58.600 47.619 0.00 0.00 0.00 3.67
3942 4529 2.672714 TCTCGTTCAATCGTTCTGGTG 58.327 47.619 0.00 0.00 0.00 4.17
3943 4530 3.056821 TGATCTCGTTCAATCGTTCTGGT 60.057 43.478 0.00 0.00 0.00 4.00
3944 4531 3.511699 TGATCTCGTTCAATCGTTCTGG 58.488 45.455 0.00 0.00 0.00 3.86
3945 4532 3.000277 GCTGATCTCGTTCAATCGTTCTG 60.000 47.826 0.00 0.00 0.00 3.02
4044 4636 3.769300 AGCTGAAAATGGTTATTGGTCCC 59.231 43.478 0.00 0.00 0.00 4.46
4047 4639 5.304101 TGACAAGCTGAAAATGGTTATTGGT 59.696 36.000 0.00 0.00 0.00 3.67
4049 4641 6.215121 TGTGACAAGCTGAAAATGGTTATTG 58.785 36.000 0.00 0.00 0.00 1.90
4050 4642 6.403866 TGTGACAAGCTGAAAATGGTTATT 57.596 33.333 0.00 0.00 0.00 1.40
4051 4643 5.047802 CCTGTGACAAGCTGAAAATGGTTAT 60.048 40.000 0.00 0.00 0.00 1.89
4052 4644 4.278170 CCTGTGACAAGCTGAAAATGGTTA 59.722 41.667 0.00 0.00 0.00 2.85
4054 4646 2.624838 CCTGTGACAAGCTGAAAATGGT 59.375 45.455 0.00 0.00 0.00 3.55
4055 4647 2.608752 GCCTGTGACAAGCTGAAAATGG 60.609 50.000 0.00 0.00 0.00 3.16
4267 4915 7.746475 GTGAGAATGAATGAAAACCGTCTTAAG 59.254 37.037 0.00 0.00 0.00 1.85
4293 4942 1.006825 TTGATGCCGTCGACTTGTCG 61.007 55.000 14.70 15.98 0.00 4.35
4299 4948 1.369091 AATGCCTTGATGCCGTCGAC 61.369 55.000 5.18 5.18 0.00 4.20
4315 4964 4.264253 TCCTATCCTTGACAAGCACAATG 58.736 43.478 9.85 0.00 0.00 2.82
4320 4970 3.445008 ACTCTCCTATCCTTGACAAGCA 58.555 45.455 9.85 0.00 0.00 3.91
4595 5248 3.780804 TGTGCATAACAAGGGTACTGT 57.219 42.857 0.00 0.00 35.24 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.