Multiple sequence alignment - TraesCS4D01G230200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G230200 chr4D 100.000 6721 0 0 1 6721 390263477 390270197 0.000000e+00 12412
1 TraesCS4D01G230200 chr4D 90.370 270 25 1 3136 3405 275616495 275616763 2.980000e-93 353
2 TraesCS4D01G230200 chr4B 89.282 2855 191 53 3395 6186 480052235 480055037 0.000000e+00 3470
3 TraesCS4D01G230200 chr4B 90.030 1645 97 27 1493 3127 480050643 480052230 0.000000e+00 2067
4 TraesCS4D01G230200 chr4B 88.093 949 74 23 297 1225 480049305 480050234 0.000000e+00 1090
5 TraesCS4D01G230200 chr4B 91.045 268 16 3 1233 1493 480050338 480050604 8.290000e-94 355
6 TraesCS4D01G230200 chr4B 86.007 293 32 7 1 292 480048974 480049258 8.470000e-79 305
7 TraesCS4D01G230200 chr4B 90.000 210 10 3 6512 6721 480055470 480055668 1.860000e-65 261
8 TraesCS4D01G230200 chr4A 96.429 2016 56 9 522 2534 71997837 71999839 0.000000e+00 3310
9 TraesCS4D01G230200 chr4A 91.220 1287 62 22 5290 6540 72000951 72002222 0.000000e+00 1703
10 TraesCS4D01G230200 chr4A 96.548 985 20 4 3395 4372 71999974 72000951 0.000000e+00 1618
11 TraesCS4D01G230200 chr4A 93.726 526 22 3 3 526 71997299 71997815 0.000000e+00 778
12 TraesCS4D01G230200 chr4A 90.977 266 22 2 3136 3400 440164172 440163908 2.300000e-94 357
13 TraesCS4D01G230200 chr4A 95.890 146 5 1 2992 3137 71999832 71999976 1.130000e-57 235
14 TraesCS4D01G230200 chr4A 89.894 188 8 5 6543 6721 72013856 72014041 1.460000e-56 231
15 TraesCS4D01G230200 chr7B 92.366 262 19 1 3136 3397 642752595 642752855 8.230000e-99 372
16 TraesCS4D01G230200 chr1D 91.729 266 21 1 3135 3400 379732577 379732313 1.060000e-97 368
17 TraesCS4D01G230200 chr3B 91.221 262 22 1 3136 3397 480376942 480377202 8.290000e-94 355
18 TraesCS4D01G230200 chr3D 90.840 262 23 1 3136 3397 65539168 65538908 3.860000e-92 350
19 TraesCS4D01G230200 chr5B 89.963 269 25 2 3136 3404 252323644 252323910 4.990000e-91 346
20 TraesCS4D01G230200 chr3A 89.963 269 26 1 3136 3404 529850167 529849900 4.990000e-91 346
21 TraesCS4D01G230200 chr6A 89.744 273 22 3 3134 3404 89894572 89894840 1.790000e-90 344
22 TraesCS4D01G230200 chr6D 90.909 99 7 1 430 526 304099287 304099385 1.520000e-26 132
23 TraesCS4D01G230200 chr6B 89.796 98 8 1 430 525 469774172 469774269 2.540000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G230200 chr4D 390263477 390270197 6720 False 12412.0 12412 100.000000 1 6721 1 chr4D.!!$F2 6720
1 TraesCS4D01G230200 chr4B 480048974 480055668 6694 False 1258.0 3470 89.076167 1 6721 6 chr4B.!!$F1 6720
2 TraesCS4D01G230200 chr4A 71997299 72002222 4923 False 1528.8 3310 94.762600 3 6540 5 chr4A.!!$F2 6537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 539 1.045350 CCAAGAGATCCTGGGCTCGA 61.045 60.000 10.43 0.0 36.29 4.04 F
549 626 1.690219 CCTGGCGTGGGAGCTTCTAT 61.690 60.000 0.00 0.0 37.29 1.98 F
1527 1750 3.268023 AGGCAGATCCTTTAACCTTCG 57.732 47.619 0.00 0.0 44.75 3.79 F
2661 2888 0.811281 GATTTTGCTTCTGGTCGGGG 59.189 55.000 0.00 0.0 0.00 5.73 F
3186 3420 0.030235 GTTTCCCGTGCAAGTCAACC 59.970 55.000 0.00 0.0 0.00 3.77 F
3188 3422 0.179004 TTCCCGTGCAAGTCAACCAT 60.179 50.000 0.00 0.0 0.00 3.55 F
4687 4940 0.108424 ACCAGCATCGCAGAGAGAAC 60.108 55.000 0.00 0.0 43.63 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1472 2.046314 CGGCGGGGTCATTTGAGT 60.046 61.111 0.00 0.0 0.0 3.41 R
2312 2536 2.168313 TCCACTCTCGCTGCATATCAAA 59.832 45.455 0.00 0.0 0.0 2.69 R
3167 3401 0.030235 GGTTGACTTGCACGGGAAAC 59.970 55.000 0.00 0.0 0.0 2.78 R
4514 4764 1.335496 CATGCATGCCGACAATGATCA 59.665 47.619 14.93 0.0 0.0 2.92 R
4669 4922 0.108472 TGTTCTCTCTGCGATGCTGG 60.108 55.000 0.00 0.0 0.0 4.85 R
4878 5132 0.325577 TGCAGGTATCAGAGCCAGGA 60.326 55.000 0.00 0.0 0.0 3.86 R
6302 6727 0.373716 CTGAAACCGCCGACATAAGC 59.626 55.000 0.00 0.0 0.0 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.035102 ACCCAAAGCCTCTCGCCC 62.035 66.667 0.00 0.00 38.78 6.13
70 71 6.756542 TGTAGTAATTCTGGTGAACATGATCG 59.243 38.462 0.00 0.00 34.71 3.69
75 76 4.406648 TCTGGTGAACATGATCGCTTAT 57.593 40.909 15.12 0.00 0.00 1.73
141 142 4.002982 TGGTTCTGTGAATCACTGCATAC 58.997 43.478 14.97 11.64 35.11 2.39
146 147 5.281727 TCTGTGAATCACTGCATACGTATC 58.718 41.667 14.97 1.78 35.11 2.24
168 169 4.946772 TCTCTGAGTACATGAGTTGGAGAG 59.053 45.833 0.00 3.11 0.00 3.20
187 188 2.290641 GAGTCAATGTGGTGTTGTGGTC 59.709 50.000 0.00 0.00 0.00 4.02
251 252 4.563337 ACAAGAACTAACCTTTTTCGGC 57.437 40.909 0.00 0.00 0.00 5.54
467 516 2.633481 AGTTGTGAAGTACTCCCCACTC 59.367 50.000 17.95 13.03 0.00 3.51
490 539 1.045350 CCAAGAGATCCTGGGCTCGA 61.045 60.000 10.43 0.00 36.29 4.04
549 626 1.690219 CCTGGCGTGGGAGCTTCTAT 61.690 60.000 0.00 0.00 37.29 1.98
649 726 7.757624 TGTACATTTCCAGTTGAAACAGTTTTC 59.242 33.333 0.00 0.00 45.38 2.29
720 797 4.825085 GGGTGTAGAATTTTCCACTTGACA 59.175 41.667 0.00 0.00 0.00 3.58
799 876 5.177696 GCGTAGTGTCAATCTTCTTTGTTCT 59.822 40.000 0.00 0.00 0.00 3.01
805 882 8.743714 AGTGTCAATCTTCTTTGTTCTTTCTTT 58.256 29.630 0.00 0.00 0.00 2.52
1207 1288 6.495181 TCAGGTTCATAGAATGAGACTATCCC 59.505 42.308 0.00 0.00 40.94 3.85
1296 1472 5.184479 GCATACTATAATGTCCCTGGTACGA 59.816 44.000 0.00 0.00 0.00 3.43
1527 1750 3.268023 AGGCAGATCCTTTAACCTTCG 57.732 47.619 0.00 0.00 44.75 3.79
1551 1774 6.423001 CGGTCATAGGGTTTGCTAATACTTAC 59.577 42.308 0.00 0.00 0.00 2.34
1556 1779 4.874396 AGGGTTTGCTAATACTTACGAAGC 59.126 41.667 0.00 0.00 0.00 3.86
1565 1788 8.761497 TGCTAATACTTACGAAGCACATTATTC 58.239 33.333 0.00 0.00 38.22 1.75
2064 2288 8.218423 AGGGATTCATGTTTTAAAATTTCCCT 57.782 30.769 19.17 19.17 36.75 4.20
2234 2458 4.762251 GCAAAACCTTTAGTGTCATCCTCT 59.238 41.667 0.00 0.00 0.00 3.69
2312 2536 5.305386 TGGATGAATGACGAGTCCTCAATAT 59.695 40.000 8.52 0.00 0.00 1.28
2552 2778 3.201290 GACTATTGCCAGATGACACCTG 58.799 50.000 0.00 0.00 0.00 4.00
2556 2782 1.002868 GCCAGATGACACCTGCACT 60.003 57.895 0.00 0.00 0.00 4.40
2604 2830 1.155889 TTGGTAGCATTGCACACTCG 58.844 50.000 11.91 0.00 0.00 4.18
2616 2842 4.911514 TGCACACTCGTTCTATATAGCA 57.088 40.909 4.75 0.00 0.00 3.49
2620 2846 5.977725 GCACACTCGTTCTATATAGCAAAGA 59.022 40.000 4.75 7.39 0.00 2.52
2623 2850 6.153067 CACTCGTTCTATATAGCAAAGAGGG 58.847 44.000 24.11 20.81 0.00 4.30
2632 2859 1.140312 AGCAAAGAGGGAACTGACCA 58.860 50.000 0.00 0.00 44.43 4.02
2661 2888 0.811281 GATTTTGCTTCTGGTCGGGG 59.189 55.000 0.00 0.00 0.00 5.73
2685 2912 1.827344 AGGCCTTTTGCTAAATCCAGC 59.173 47.619 0.00 5.97 42.15 4.85
2732 2964 6.662755 TGACCAATGATTACCAGCTCTATTT 58.337 36.000 0.00 0.00 0.00 1.40
2767 2999 5.178096 TCTGAAGAATTGAATGGTAGCCA 57.822 39.130 0.00 0.00 38.19 4.75
2796 3028 9.277565 CTATTTGAATTCTTGATTGTTACACGG 57.722 33.333 7.05 0.00 0.00 4.94
2806 3040 1.599797 GTTACACGGCCAGCACCTT 60.600 57.895 2.24 0.00 0.00 3.50
2818 3052 3.612479 GCCAGCACCTTTTAACAGATGTG 60.612 47.826 0.00 0.00 0.00 3.21
2819 3053 3.568538 CAGCACCTTTTAACAGATGTGC 58.431 45.455 12.44 12.44 47.00 4.57
2820 3054 3.923017 GCACCTTTTAACAGATGTGCT 57.077 42.857 12.86 0.00 44.16 4.40
2870 3104 6.358118 TGATTCCGTGTTAATATCAACTGC 57.642 37.500 0.00 0.00 0.00 4.40
2915 3149 7.134815 GCATGCATCTTTGGTAGTTGTATAAG 58.865 38.462 14.21 0.00 30.62 1.73
2943 3177 8.618702 TTATCATTGCCAATTTTGTTCATGTT 57.381 26.923 0.00 0.00 0.00 2.71
2944 3178 6.301687 TCATTGCCAATTTTGTTCATGTTG 57.698 33.333 0.00 0.00 0.00 3.33
2954 3188 8.838961 CAATTTTGTTCATGTTGTTTGAAACAC 58.161 29.630 10.72 6.93 42.56 3.32
2958 3192 3.175152 TCATGTTGTTTGAAACACGTGC 58.825 40.909 17.22 0.00 42.56 5.34
2974 3208 1.065701 CGTGCTTATCCTGCTAGTCGT 59.934 52.381 0.00 0.00 0.00 4.34
3022 3256 4.400845 CTGTATGGTCGATATTACCGTCG 58.599 47.826 6.25 0.00 40.08 5.12
3027 3261 3.316029 TGGTCGATATTACCGTCGTCATT 59.684 43.478 0.00 0.00 40.08 2.57
3134 3368 6.265876 GGTAGGTCCTAAAATCTCCTCTAGTG 59.734 46.154 0.00 0.00 0.00 2.74
3135 3369 5.844601 AGGTCCTAAAATCTCCTCTAGTGT 58.155 41.667 0.00 0.00 0.00 3.55
3136 3370 6.982899 AGGTCCTAAAATCTCCTCTAGTGTA 58.017 40.000 0.00 0.00 0.00 2.90
3137 3371 6.834969 AGGTCCTAAAATCTCCTCTAGTGTAC 59.165 42.308 0.00 0.00 0.00 2.90
3138 3372 6.834969 GGTCCTAAAATCTCCTCTAGTGTACT 59.165 42.308 0.00 0.00 0.00 2.73
3139 3373 7.013559 GGTCCTAAAATCTCCTCTAGTGTACTC 59.986 44.444 0.00 0.00 0.00 2.59
3140 3374 7.013559 GTCCTAAAATCTCCTCTAGTGTACTCC 59.986 44.444 0.00 0.00 0.00 3.85
3141 3375 6.265876 CCTAAAATCTCCTCTAGTGTACTCCC 59.734 46.154 0.00 0.00 0.00 4.30
3142 3376 5.475398 AAATCTCCTCTAGTGTACTCCCT 57.525 43.478 0.00 0.00 0.00 4.20
3143 3377 4.717279 ATCTCCTCTAGTGTACTCCCTC 57.283 50.000 0.00 0.00 0.00 4.30
3144 3378 3.738434 TCTCCTCTAGTGTACTCCCTCT 58.262 50.000 0.00 0.00 0.00 3.69
3145 3379 3.456644 TCTCCTCTAGTGTACTCCCTCTG 59.543 52.174 0.00 0.00 0.00 3.35
3146 3380 3.191273 TCCTCTAGTGTACTCCCTCTGT 58.809 50.000 0.00 0.00 0.00 3.41
3147 3381 3.592427 TCCTCTAGTGTACTCCCTCTGTT 59.408 47.826 0.00 0.00 0.00 3.16
3148 3382 3.949113 CCTCTAGTGTACTCCCTCTGTTC 59.051 52.174 0.00 0.00 0.00 3.18
3149 3383 3.949113 CTCTAGTGTACTCCCTCTGTTCC 59.051 52.174 0.00 0.00 0.00 3.62
3150 3384 2.696526 AGTGTACTCCCTCTGTTCCA 57.303 50.000 0.00 0.00 0.00 3.53
3151 3385 2.530701 AGTGTACTCCCTCTGTTCCAG 58.469 52.381 0.00 0.00 0.00 3.86
3152 3386 2.110188 AGTGTACTCCCTCTGTTCCAGA 59.890 50.000 0.00 0.00 38.25 3.86
3153 3387 2.897969 GTGTACTCCCTCTGTTCCAGAA 59.102 50.000 0.00 0.00 40.18 3.02
3154 3388 3.515901 GTGTACTCCCTCTGTTCCAGAAT 59.484 47.826 0.00 0.00 40.18 2.40
3155 3389 4.710375 GTGTACTCCCTCTGTTCCAGAATA 59.290 45.833 0.00 0.00 40.18 1.75
3156 3390 5.364157 GTGTACTCCCTCTGTTCCAGAATAT 59.636 44.000 0.00 0.00 40.18 1.28
3157 3391 6.550108 GTGTACTCCCTCTGTTCCAGAATATA 59.450 42.308 0.00 0.00 40.18 0.86
3158 3392 7.069578 GTGTACTCCCTCTGTTCCAGAATATAA 59.930 40.741 0.00 0.00 40.18 0.98
3159 3393 6.739331 ACTCCCTCTGTTCCAGAATATAAG 57.261 41.667 0.00 0.00 40.18 1.73
3160 3394 5.604650 ACTCCCTCTGTTCCAGAATATAAGG 59.395 44.000 0.00 0.00 40.18 2.69
3161 3395 5.538877 TCCCTCTGTTCCAGAATATAAGGT 58.461 41.667 0.00 0.00 40.18 3.50
3162 3396 6.689561 TCCCTCTGTTCCAGAATATAAGGTA 58.310 40.000 0.00 0.00 40.18 3.08
3163 3397 7.313731 TCCCTCTGTTCCAGAATATAAGGTAT 58.686 38.462 0.00 0.00 40.18 2.73
3164 3398 8.461854 TCCCTCTGTTCCAGAATATAAGGTATA 58.538 37.037 0.00 0.00 40.18 1.47
3165 3399 9.273137 CCCTCTGTTCCAGAATATAAGGTATAT 57.727 37.037 0.00 0.00 40.18 0.86
3174 3408 9.162764 CCAGAATATAAGGTATATTGTTTCCCG 57.837 37.037 5.46 0.00 40.46 5.14
3175 3409 9.720769 CAGAATATAAGGTATATTGTTTCCCGT 57.279 33.333 5.46 0.00 40.46 5.28
3176 3410 9.720769 AGAATATAAGGTATATTGTTTCCCGTG 57.279 33.333 5.46 0.00 40.46 4.94
3177 3411 7.916914 ATATAAGGTATATTGTTTCCCGTGC 57.083 36.000 0.00 0.00 0.00 5.34
3178 3412 3.637911 AGGTATATTGTTTCCCGTGCA 57.362 42.857 0.00 0.00 0.00 4.57
3179 3413 3.958018 AGGTATATTGTTTCCCGTGCAA 58.042 40.909 0.00 0.00 0.00 4.08
3180 3414 3.945285 AGGTATATTGTTTCCCGTGCAAG 59.055 43.478 0.00 0.00 0.00 4.01
3181 3415 3.692593 GGTATATTGTTTCCCGTGCAAGT 59.307 43.478 0.00 0.00 0.00 3.16
3182 3416 4.201881 GGTATATTGTTTCCCGTGCAAGTC 60.202 45.833 0.00 0.00 0.00 3.01
3183 3417 1.686355 ATTGTTTCCCGTGCAAGTCA 58.314 45.000 0.00 0.00 0.00 3.41
3184 3418 1.464734 TTGTTTCCCGTGCAAGTCAA 58.535 45.000 0.00 0.00 0.00 3.18
3185 3419 0.736053 TGTTTCCCGTGCAAGTCAAC 59.264 50.000 0.00 0.00 0.00 3.18
3186 3420 0.030235 GTTTCCCGTGCAAGTCAACC 59.970 55.000 0.00 0.00 0.00 3.77
3187 3421 0.394488 TTTCCCGTGCAAGTCAACCA 60.394 50.000 0.00 0.00 0.00 3.67
3188 3422 0.179004 TTCCCGTGCAAGTCAACCAT 60.179 50.000 0.00 0.00 0.00 3.55
3189 3423 0.179004 TCCCGTGCAAGTCAACCATT 60.179 50.000 0.00 0.00 0.00 3.16
3190 3424 0.673437 CCCGTGCAAGTCAACCATTT 59.327 50.000 0.00 0.00 0.00 2.32
3191 3425 1.602668 CCCGTGCAAGTCAACCATTTG 60.603 52.381 0.00 0.00 0.00 2.32
3192 3426 1.336440 CCGTGCAAGTCAACCATTTGA 59.664 47.619 0.00 0.00 39.55 2.69
3193 3427 2.223688 CCGTGCAAGTCAACCATTTGAA 60.224 45.455 0.00 0.00 43.52 2.69
3194 3428 3.552684 CCGTGCAAGTCAACCATTTGAAT 60.553 43.478 0.00 0.00 43.52 2.57
3195 3429 3.426191 CGTGCAAGTCAACCATTTGAATG 59.574 43.478 0.00 0.00 43.52 2.67
3196 3430 4.370917 GTGCAAGTCAACCATTTGAATGT 58.629 39.130 0.00 0.00 43.52 2.71
3197 3431 4.810491 GTGCAAGTCAACCATTTGAATGTT 59.190 37.500 0.00 0.00 43.52 2.71
3198 3432 5.294060 GTGCAAGTCAACCATTTGAATGTTT 59.706 36.000 0.00 0.00 43.52 2.83
3199 3433 5.293814 TGCAAGTCAACCATTTGAATGTTTG 59.706 36.000 7.44 7.44 43.52 2.93
3200 3434 5.523188 GCAAGTCAACCATTTGAATGTTTGA 59.477 36.000 11.22 11.22 42.89 2.69
3203 3437 5.604758 TCAACCATTTGAATGTTTGACCA 57.395 34.783 11.22 0.00 41.11 4.02
3204 3438 5.982356 TCAACCATTTGAATGTTTGACCAA 58.018 33.333 11.22 0.00 41.11 3.67
3205 3439 6.047870 TCAACCATTTGAATGTTTGACCAAG 58.952 36.000 11.22 0.00 41.11 3.61
3206 3440 5.867903 ACCATTTGAATGTTTGACCAAGA 57.132 34.783 3.30 0.00 34.60 3.02
3207 3441 6.423776 ACCATTTGAATGTTTGACCAAGAT 57.576 33.333 3.30 0.00 34.60 2.40
3208 3442 6.829849 ACCATTTGAATGTTTGACCAAGATT 58.170 32.000 3.30 0.00 34.60 2.40
3209 3443 7.961351 ACCATTTGAATGTTTGACCAAGATTA 58.039 30.769 3.30 0.00 34.60 1.75
3210 3444 8.596293 ACCATTTGAATGTTTGACCAAGATTAT 58.404 29.630 3.30 0.00 34.60 1.28
3273 3507 9.865321 AAAATATGAAACAACTTCTCATGATGG 57.135 29.630 0.00 0.00 34.86 3.51
3274 3508 8.812513 AATATGAAACAACTTCTCATGATGGA 57.187 30.769 0.00 0.00 34.86 3.41
3275 3509 8.991783 ATATGAAACAACTTCTCATGATGGAT 57.008 30.769 0.00 0.00 34.86 3.41
3276 3510 6.748333 TGAAACAACTTCTCATGATGGATC 57.252 37.500 0.00 0.00 34.86 3.36
3277 3511 6.240145 TGAAACAACTTCTCATGATGGATCA 58.760 36.000 0.00 0.00 36.75 2.92
3278 3512 6.716173 TGAAACAACTTCTCATGATGGATCAA 59.284 34.615 0.00 0.00 36.29 2.57
3279 3513 7.231115 TGAAACAACTTCTCATGATGGATCAAA 59.769 33.333 0.00 0.00 36.29 2.69
3280 3514 7.713734 AACAACTTCTCATGATGGATCAAAT 57.286 32.000 0.00 0.00 40.69 2.32
3281 3515 7.096884 ACAACTTCTCATGATGGATCAAATG 57.903 36.000 0.00 0.00 40.69 2.32
3282 3516 6.888088 ACAACTTCTCATGATGGATCAAATGA 59.112 34.615 0.00 0.00 40.69 2.57
3283 3517 7.560262 ACAACTTCTCATGATGGATCAAATGAT 59.440 33.333 0.00 0.00 40.69 2.45
3284 3518 9.063615 CAACTTCTCATGATGGATCAAATGATA 57.936 33.333 0.00 0.00 40.69 2.15
3285 3519 9.809395 AACTTCTCATGATGGATCAAATGATAT 57.191 29.630 0.00 0.00 40.69 1.63
3338 3572 8.795786 TTTTTCTAAAAACTCGGTCAATCATG 57.204 30.769 0.00 0.00 33.29 3.07
3339 3573 6.494893 TTCTAAAAACTCGGTCAATCATGG 57.505 37.500 0.00 0.00 0.00 3.66
3340 3574 3.575965 AAAAACTCGGTCAATCATGGC 57.424 42.857 0.00 0.00 0.00 4.40
3348 3582 2.549633 GTCAATCATGGCCTCGTTTG 57.450 50.000 3.32 6.86 0.00 2.93
3349 3583 2.083774 GTCAATCATGGCCTCGTTTGA 58.916 47.619 3.32 9.15 0.00 2.69
3350 3584 2.083774 TCAATCATGGCCTCGTTTGAC 58.916 47.619 3.32 0.00 0.00 3.18
3351 3585 2.086869 CAATCATGGCCTCGTTTGACT 58.913 47.619 3.32 0.00 0.00 3.41
3352 3586 2.489329 CAATCATGGCCTCGTTTGACTT 59.511 45.455 3.32 0.00 0.00 3.01
3353 3587 2.270352 TCATGGCCTCGTTTGACTTT 57.730 45.000 3.32 0.00 0.00 2.66
3354 3588 2.582052 TCATGGCCTCGTTTGACTTTT 58.418 42.857 3.32 0.00 0.00 2.27
3355 3589 2.293122 TCATGGCCTCGTTTGACTTTTG 59.707 45.455 3.32 0.00 0.00 2.44
3356 3590 2.045561 TGGCCTCGTTTGACTTTTGA 57.954 45.000 3.32 0.00 0.00 2.69
3357 3591 2.370349 TGGCCTCGTTTGACTTTTGAA 58.630 42.857 3.32 0.00 0.00 2.69
3358 3592 2.755655 TGGCCTCGTTTGACTTTTGAAA 59.244 40.909 3.32 0.00 0.00 2.69
3359 3593 3.193691 TGGCCTCGTTTGACTTTTGAAAA 59.806 39.130 3.32 0.00 0.00 2.29
3360 3594 4.177783 GGCCTCGTTTGACTTTTGAAAAA 58.822 39.130 0.00 0.00 0.00 1.94
3361 3595 4.032445 GGCCTCGTTTGACTTTTGAAAAAC 59.968 41.667 0.00 0.00 0.00 2.43
3362 3596 4.032445 GCCTCGTTTGACTTTTGAAAAACC 59.968 41.667 0.00 0.00 30.47 3.27
3363 3597 5.164954 CCTCGTTTGACTTTTGAAAAACCA 58.835 37.500 0.00 0.00 30.47 3.67
3364 3598 5.635700 CCTCGTTTGACTTTTGAAAAACCAA 59.364 36.000 0.00 0.00 30.47 3.67
3365 3599 6.146347 CCTCGTTTGACTTTTGAAAAACCAAA 59.854 34.615 10.85 10.85 34.56 3.28
3366 3600 7.148490 CCTCGTTTGACTTTTGAAAAACCAAAT 60.148 33.333 15.27 0.00 36.12 2.32
3367 3601 8.758633 TCGTTTGACTTTTGAAAAACCAAATA 57.241 26.923 15.27 8.26 36.12 1.40
3368 3602 9.204570 TCGTTTGACTTTTGAAAAACCAAATAA 57.795 25.926 15.27 8.04 36.12 1.40
3369 3603 9.813080 CGTTTGACTTTTGAAAAACCAAATAAA 57.187 25.926 15.27 0.83 36.12 1.40
3373 3607 9.508642 TGACTTTTGAAAAACCAAATAAAACCT 57.491 25.926 0.00 0.00 36.12 3.50
3391 3625 9.788889 ATAAAACCTTATATAAAGGAACGGAGG 57.211 33.333 10.67 4.52 39.81 4.30
3392 3626 5.820404 ACCTTATATAAAGGAACGGAGGG 57.180 43.478 10.67 4.11 39.81 4.30
3393 3627 5.470501 ACCTTATATAAAGGAACGGAGGGA 58.529 41.667 10.67 0.00 39.81 4.20
4018 4263 9.577110 CTGTAGTTTTTGCATAATTCACATGAT 57.423 29.630 0.00 0.00 0.00 2.45
4240 4488 2.364632 TGACAATCCCGTTTGCATAGG 58.635 47.619 0.00 0.00 0.00 2.57
4299 4547 2.386661 TCCTGCTCTCGTGGATTTTC 57.613 50.000 0.00 0.00 0.00 2.29
4305 4553 5.355350 CCTGCTCTCGTGGATTTTCTTTTAT 59.645 40.000 0.00 0.00 0.00 1.40
4405 4653 1.411612 GTAGCGTACCTGGCCAGTATT 59.588 52.381 30.63 16.93 0.00 1.89
4450 4698 4.694339 ACCTAAATCTAGCCTAAACAGCG 58.306 43.478 0.00 0.00 34.64 5.18
4454 4702 0.535335 TCTAGCCTAAACAGCGGTGG 59.465 55.000 20.20 1.00 34.64 4.61
4455 4703 0.535335 CTAGCCTAAACAGCGGTGGA 59.465 55.000 20.20 2.71 34.64 4.02
4456 4704 1.139058 CTAGCCTAAACAGCGGTGGAT 59.861 52.381 20.20 9.54 34.64 3.41
4458 4706 1.173913 GCCTAAACAGCGGTGGATTT 58.826 50.000 20.20 13.35 0.00 2.17
4463 4712 2.799126 AACAGCGGTGGATTTGGATA 57.201 45.000 20.20 0.00 0.00 2.59
4467 4716 2.294233 CAGCGGTGGATTTGGATATTGG 59.706 50.000 6.74 0.00 0.00 3.16
4468 4717 1.000274 GCGGTGGATTTGGATATTGGC 60.000 52.381 0.00 0.00 0.00 4.52
4476 4725 4.038402 GGATTTGGATATTGGCTGGACTTG 59.962 45.833 0.00 0.00 0.00 3.16
4479 4728 4.046286 TGGATATTGGCTGGACTTGTTT 57.954 40.909 0.00 0.00 0.00 2.83
4480 4729 3.763360 TGGATATTGGCTGGACTTGTTTG 59.237 43.478 0.00 0.00 0.00 2.93
4481 4730 4.016444 GGATATTGGCTGGACTTGTTTGA 58.984 43.478 0.00 0.00 0.00 2.69
4495 4744 4.281688 ACTTGTTTGAATTGACTCCATGGG 59.718 41.667 13.02 5.22 0.00 4.00
4514 4764 9.772605 TCCATGGGAATATTTCTAATTATGCAT 57.227 29.630 13.02 3.79 0.00 3.96
4530 4780 1.335496 TGCATGATCATTGTCGGCATG 59.665 47.619 12.27 0.00 39.35 4.06
4550 4800 1.774639 CATGTGTGCCTGCAAACTTC 58.225 50.000 13.27 0.00 35.31 3.01
4555 4805 2.256461 GCCTGCAAACTTCGCCAG 59.744 61.111 0.00 0.00 0.00 4.85
4556 4806 2.555547 GCCTGCAAACTTCGCCAGT 61.556 57.895 0.00 0.00 37.30 4.00
4562 4812 2.297880 TGCAAACTTCGCCAGTAGTCTA 59.702 45.455 0.00 0.00 32.94 2.59
4564 4814 3.367087 GCAAACTTCGCCAGTAGTCTAGA 60.367 47.826 0.00 0.00 32.94 2.43
4565 4815 4.806330 CAAACTTCGCCAGTAGTCTAGAA 58.194 43.478 0.00 0.00 32.94 2.10
4566 4816 4.437772 AACTTCGCCAGTAGTCTAGAAC 57.562 45.455 0.00 0.00 32.94 3.01
4567 4817 3.418995 ACTTCGCCAGTAGTCTAGAACA 58.581 45.455 0.00 0.00 31.97 3.18
4569 4819 3.069079 TCGCCAGTAGTCTAGAACAGT 57.931 47.619 0.00 0.00 0.00 3.55
4570 4820 2.747989 TCGCCAGTAGTCTAGAACAGTG 59.252 50.000 0.00 0.00 0.00 3.66
4571 4821 2.747989 CGCCAGTAGTCTAGAACAGTGA 59.252 50.000 0.00 0.00 0.00 3.41
4572 4822 3.378742 CGCCAGTAGTCTAGAACAGTGAT 59.621 47.826 0.00 0.00 0.00 3.06
4573 4823 4.677584 GCCAGTAGTCTAGAACAGTGATG 58.322 47.826 0.00 0.00 0.00 3.07
4574 4824 4.158764 GCCAGTAGTCTAGAACAGTGATGT 59.841 45.833 0.00 0.00 0.00 3.06
4575 4825 5.336849 GCCAGTAGTCTAGAACAGTGATGTT 60.337 44.000 0.00 0.00 34.29 2.71
4576 4826 6.692486 CCAGTAGTCTAGAACAGTGATGTTT 58.308 40.000 0.00 0.00 31.35 2.83
4608 4858 5.084519 AGCATCTTCAATGGATGGCATAAT 58.915 37.500 0.00 0.00 40.40 1.28
4613 4863 6.367161 TCTTCAATGGATGGCATAATCTGAA 58.633 36.000 0.00 7.12 0.00 3.02
4614 4864 6.834969 TCTTCAATGGATGGCATAATCTGAAA 59.165 34.615 0.00 0.00 0.00 2.69
4684 4937 1.144565 CGAACCAGCATCGCAGAGAG 61.145 60.000 0.00 0.00 43.63 3.20
4687 4940 0.108424 ACCAGCATCGCAGAGAGAAC 60.108 55.000 0.00 0.00 43.63 3.01
4693 4946 2.200067 CATCGCAGAGAGAACATGGAC 58.800 52.381 0.00 0.00 43.63 4.02
4697 4950 2.164422 CGCAGAGAGAACATGGACTACA 59.836 50.000 0.00 0.00 0.00 2.74
4698 4951 3.367395 CGCAGAGAGAACATGGACTACAA 60.367 47.826 0.00 0.00 0.00 2.41
4712 4965 9.733556 ACATGGACTACAACATTTGAATAACTA 57.266 29.630 0.00 0.00 0.00 2.24
4729 4982 9.226606 TGAATAACTAATGAAAACTGGTACCTG 57.773 33.333 16.66 16.66 0.00 4.00
4737 4990 3.915437 AAACTGGTACCTGCATTTTCG 57.085 42.857 18.02 0.00 0.00 3.46
4743 4996 1.669265 GTACCTGCATTTTCGTAGGGC 59.331 52.381 0.00 0.00 42.63 5.19
4753 5006 2.747396 TTCGTAGGGCTAAAAGCGAA 57.253 45.000 0.00 0.00 43.62 4.70
4785 5038 5.829924 AGACACATCTTCAACTTTTCACCAT 59.170 36.000 0.00 0.00 0.00 3.55
4791 5044 8.641541 ACATCTTCAACTTTTCACCATACATTT 58.358 29.630 0.00 0.00 0.00 2.32
4803 5056 5.705441 TCACCATACATTTGTTCCTGAAGTC 59.295 40.000 0.00 0.00 0.00 3.01
4808 5061 3.890756 ACATTTGTTCCTGAAGTCATGCA 59.109 39.130 0.00 0.00 0.00 3.96
4838 5091 6.395426 TGAAAACATGATGAATATCCTGCC 57.605 37.500 0.00 0.00 33.71 4.85
4847 5100 8.464404 CATGATGAATATCCTGCCGATAAAAAT 58.536 33.333 0.00 0.00 37.01 1.82
4855 5109 5.502079 TCCTGCCGATAAAAATTTAGGTCA 58.498 37.500 0.00 0.00 0.00 4.02
4888 5142 6.378280 ACTTATTTGGTTATTTCCTGGCTCTG 59.622 38.462 0.00 0.00 0.00 3.35
4903 5157 3.072944 GGCTCTGATACCTGCATGATTC 58.927 50.000 0.00 0.00 0.00 2.52
4932 5186 4.020543 AGTTGGTTGTTTTGGCTTACTGA 58.979 39.130 0.00 0.00 0.00 3.41
4933 5187 4.097892 AGTTGGTTGTTTTGGCTTACTGAG 59.902 41.667 0.00 0.00 0.00 3.35
4940 5194 6.131544 TGTTTTGGCTTACTGAGAACTTTC 57.868 37.500 0.00 0.00 0.00 2.62
4941 5195 5.650266 TGTTTTGGCTTACTGAGAACTTTCA 59.350 36.000 0.00 0.00 0.00 2.69
4943 5197 3.390135 TGGCTTACTGAGAACTTTCACG 58.610 45.455 0.00 0.00 0.00 4.35
4944 5198 2.157863 GGCTTACTGAGAACTTTCACGC 59.842 50.000 0.00 0.00 0.00 5.34
5010 5264 4.781934 AGGATATTGGAAACTGCTGTACC 58.218 43.478 11.16 11.16 0.00 3.34
5015 5269 3.237268 TGGAAACTGCTGTACCCAAAT 57.763 42.857 12.49 0.00 0.00 2.32
5038 5293 1.745115 CCATGGCTGGGTGTACACG 60.745 63.158 19.41 7.42 39.04 4.49
5042 5297 4.016706 GCTGGGTGTACACGGGCT 62.017 66.667 19.41 0.00 0.00 5.19
5050 5305 3.275999 GGTGTACACGGGCTCAAATTAT 58.724 45.455 19.41 0.00 0.00 1.28
5053 5308 5.049680 GGTGTACACGGGCTCAAATTATATG 60.050 44.000 19.41 0.00 0.00 1.78
5056 5311 4.523083 ACACGGGCTCAAATTATATGTGT 58.477 39.130 0.00 0.00 33.57 3.72
5057 5312 4.335315 ACACGGGCTCAAATTATATGTGTG 59.665 41.667 0.00 0.00 36.74 3.82
5074 5329 8.687292 ATATGTGTGATGTCATGCTATTTCTT 57.313 30.769 0.00 0.00 0.00 2.52
5081 5336 7.487189 GTGATGTCATGCTATTTCTTTGGAAAG 59.513 37.037 0.00 0.00 43.52 2.62
5148 5403 6.183360 GGAAAACCATGGGAATATTGGTGTAG 60.183 42.308 18.09 0.00 42.85 2.74
5149 5404 4.453480 ACCATGGGAATATTGGTGTAGG 57.547 45.455 18.09 0.00 42.09 3.18
5158 5413 2.148446 ATTGGTGTAGGCATGCACAT 57.852 45.000 20.81 7.30 43.20 3.21
5159 5414 2.797177 TTGGTGTAGGCATGCACATA 57.203 45.000 20.81 6.79 43.20 2.29
5162 5417 1.140852 GGTGTAGGCATGCACATAGGA 59.859 52.381 20.81 0.00 43.20 2.94
5202 5457 3.686726 AGACACGAAGAATGCAGGAATTC 59.313 43.478 0.00 0.00 36.91 2.17
5209 5464 5.006165 CGAAGAATGCAGGAATTCTAGACAC 59.994 44.000 5.23 0.00 44.35 3.67
5214 5469 5.947228 TGCAGGAATTCTAGACACAAAAG 57.053 39.130 5.23 0.00 0.00 2.27
5220 5475 7.875041 CAGGAATTCTAGACACAAAAGAGAGAA 59.125 37.037 5.23 0.00 0.00 2.87
5225 5480 8.786826 TTCTAGACACAAAAGAGAGAAAAACA 57.213 30.769 0.00 0.00 0.00 2.83
5226 5481 8.197988 TCTAGACACAAAAGAGAGAAAAACAC 57.802 34.615 0.00 0.00 0.00 3.32
5227 5482 5.869350 AGACACAAAAGAGAGAAAAACACG 58.131 37.500 0.00 0.00 0.00 4.49
5230 5496 6.772078 ACACAAAAGAGAGAAAAACACGTAG 58.228 36.000 0.00 0.00 0.00 3.51
5248 5514 6.105397 ACGTAGTGTTAATCTTCCTCCAAA 57.895 37.500 0.00 0.00 42.51 3.28
5251 5517 7.333672 ACGTAGTGTTAATCTTCCTCCAAATTC 59.666 37.037 0.00 0.00 42.51 2.17
5252 5518 7.201617 CGTAGTGTTAATCTTCCTCCAAATTCC 60.202 40.741 0.00 0.00 0.00 3.01
5253 5519 6.794534 AGTGTTAATCTTCCTCCAAATTCCT 58.205 36.000 0.00 0.00 0.00 3.36
5254 5520 7.928873 AGTGTTAATCTTCCTCCAAATTCCTA 58.071 34.615 0.00 0.00 0.00 2.94
5255 5521 8.560903 AGTGTTAATCTTCCTCCAAATTCCTAT 58.439 33.333 0.00 0.00 0.00 2.57
5256 5522 8.624776 GTGTTAATCTTCCTCCAAATTCCTATG 58.375 37.037 0.00 0.00 0.00 2.23
5257 5523 7.779798 TGTTAATCTTCCTCCAAATTCCTATGG 59.220 37.037 0.00 0.00 38.09 2.74
5258 5524 6.596869 AATCTTCCTCCAAATTCCTATGGA 57.403 37.500 0.00 0.00 43.32 3.41
5259 5525 6.596869 ATCTTCCTCCAAATTCCTATGGAA 57.403 37.500 1.24 1.24 44.77 3.53
5277 5543 6.831180 ATGGAATAGGCCATTTCTCAGGGC 62.831 50.000 5.01 0.00 46.29 5.19
5412 5679 6.541278 AGGACGCCTTAATGGAAATTTACTAC 59.459 38.462 1.27 0.00 38.35 2.73
5445 5736 9.277565 GCGATGTATTATTTATGTTGCCTTATG 57.722 33.333 0.00 0.00 0.00 1.90
5586 5879 8.103948 ACTTGACCTCAGAAAATACATCTTTG 57.896 34.615 0.00 0.00 0.00 2.77
5601 5894 8.986477 ATACATCTTTGCATGTAAGTTTTTCC 57.014 30.769 2.21 0.00 41.52 3.13
5604 5897 7.439056 ACATCTTTGCATGTAAGTTTTTCCTTG 59.561 33.333 0.00 0.00 35.10 3.61
5634 5927 4.890158 TTGTGTAGATCCTCAAAGCTGA 57.110 40.909 0.00 0.00 0.00 4.26
5702 5998 5.501574 GCTTAAAGCGCTTGATAGTGAGAAG 60.502 44.000 25.80 15.18 33.62 2.85
5827 6127 6.316390 AGAGCACGAAACCTAATATTTCTTGG 59.684 38.462 0.00 0.00 36.39 3.61
5881 6181 3.077088 AGGCCGGAGATAATTAGGAGGTA 59.923 47.826 5.05 0.00 0.00 3.08
5972 6272 4.991687 ACAGATTCTTCGTCTTCTTTGTCC 59.008 41.667 0.00 0.00 0.00 4.02
6004 6306 1.398390 CTGCCGCTCTATGGTGTTTTC 59.602 52.381 0.00 0.00 0.00 2.29
6120 6428 0.321671 GTAGAGCTGCTGGTTGACCA 59.678 55.000 7.01 2.40 45.30 4.02
6186 6499 8.528643 AGTTACTAATGTGTATGCTGTACTGAA 58.471 33.333 3.61 0.00 0.00 3.02
6187 6500 9.146984 GTTACTAATGTGTATGCTGTACTGAAA 57.853 33.333 3.61 0.00 0.00 2.69
6188 6501 9.884636 TTACTAATGTGTATGCTGTACTGAAAT 57.115 29.630 3.61 0.00 0.00 2.17
6238 6663 3.704566 GGATGGTTTTACAGGAATTCCCC 59.295 47.826 21.22 13.14 36.42 4.81
6276 6701 5.769662 TGAAAATGTCAGTGGTTTGAGCTAT 59.230 36.000 0.00 0.00 0.00 2.97
6277 6702 6.939730 TGAAAATGTCAGTGGTTTGAGCTATA 59.060 34.615 0.00 0.00 0.00 1.31
6280 6705 4.566004 TGTCAGTGGTTTGAGCTATACAC 58.434 43.478 0.00 0.00 0.00 2.90
6290 6715 8.584157 TGGTTTGAGCTATACACAATTTTCATT 58.416 29.630 0.00 0.00 0.00 2.57
6303 6728 8.711457 ACACAATTTTCATTATAGTTTGCAAGC 58.289 29.630 4.95 4.95 0.00 4.01
6314 6759 0.167908 TTTGCAAGCTTATGTCGGCG 59.832 50.000 0.00 0.00 0.00 6.46
6323 6768 2.550978 CTTATGTCGGCGGTTTCAGAT 58.449 47.619 7.21 0.00 0.00 2.90
6324 6769 1.934589 TATGTCGGCGGTTTCAGATG 58.065 50.000 7.21 0.00 0.00 2.90
6327 6772 1.078497 TCGGCGGTTTCAGATGCAT 60.078 52.632 7.21 0.00 0.00 3.96
6330 6775 1.400142 CGGCGGTTTCAGATGCATAAA 59.600 47.619 0.00 0.00 0.00 1.40
6336 6781 5.278169 GCGGTTTCAGATGCATAAATCTCAT 60.278 40.000 0.00 0.00 34.60 2.90
6337 6782 6.369005 CGGTTTCAGATGCATAAATCTCATC 58.631 40.000 0.00 0.00 34.60 2.92
6388 6835 4.871557 CCGGTCATTTTCGTACCAATCTTA 59.128 41.667 0.00 0.00 32.55 2.10
6439 6886 1.038130 ACACCGTAGCTCTAGCCCAG 61.038 60.000 0.00 0.00 43.38 4.45
6449 6896 2.498078 GCTCTAGCCCAGTCACTTTAGT 59.502 50.000 0.00 0.00 34.31 2.24
6450 6897 3.055747 GCTCTAGCCCAGTCACTTTAGTT 60.056 47.826 0.00 0.00 34.31 2.24
6509 6976 0.179105 CAAACAGCACTTTGGCAGCA 60.179 50.000 0.00 0.00 35.83 4.41
6534 7001 5.001874 ACATTCTCTTCTTTTTACCCGTCC 58.998 41.667 0.00 0.00 0.00 4.79
6540 7007 4.749598 TCTTCTTTTTACCCGTCCGTTTAC 59.250 41.667 0.00 0.00 0.00 2.01
6541 7008 3.398406 TCTTTTTACCCGTCCGTTTACC 58.602 45.455 0.00 0.00 0.00 2.85
6555 7022 3.952323 CCGTTTACCAGAGTCTATCTCCA 59.048 47.826 0.00 0.00 43.71 3.86
6570 7037 6.486993 GTCTATCTCCAGTTGAAACAAAAGGT 59.513 38.462 0.00 0.00 0.00 3.50
6572 7039 4.855340 TCTCCAGTTGAAACAAAAGGTCT 58.145 39.130 0.00 0.00 0.00 3.85
6575 7042 4.095782 TCCAGTTGAAACAAAAGGTCTTCG 59.904 41.667 0.00 0.00 0.00 3.79
6576 7043 3.791353 CAGTTGAAACAAAAGGTCTTCGC 59.209 43.478 0.00 0.00 0.00 4.70
6577 7044 3.442273 AGTTGAAACAAAAGGTCTTCGCA 59.558 39.130 0.00 0.00 0.00 5.10
6578 7045 4.097892 AGTTGAAACAAAAGGTCTTCGCAT 59.902 37.500 0.00 0.00 0.00 4.73
6579 7046 4.223320 TGAAACAAAAGGTCTTCGCATC 57.777 40.909 0.00 0.00 0.00 3.91
6580 7047 3.004315 TGAAACAAAAGGTCTTCGCATCC 59.996 43.478 0.00 0.00 0.00 3.51
6581 7048 2.270352 ACAAAAGGTCTTCGCATCCA 57.730 45.000 0.00 0.00 0.00 3.41
6582 7049 2.795329 ACAAAAGGTCTTCGCATCCAT 58.205 42.857 0.00 0.00 0.00 3.41
6583 7050 2.489329 ACAAAAGGTCTTCGCATCCATG 59.511 45.455 0.00 0.00 0.00 3.66
6584 7051 2.749076 CAAAAGGTCTTCGCATCCATGA 59.251 45.455 0.00 0.00 0.00 3.07
6585 7052 3.287867 AAAGGTCTTCGCATCCATGAT 57.712 42.857 0.00 0.00 0.00 2.45
6611 7078 5.416639 TCCATCATCCTGTTCAAACATGAAG 59.583 40.000 0.00 2.06 37.17 3.02
6627 7094 0.319555 GAAGGGAAAAAGGTTGCGGC 60.320 55.000 0.00 0.00 0.00 6.53
6628 7095 1.045911 AAGGGAAAAAGGTTGCGGCA 61.046 50.000 0.00 0.00 0.00 5.69
6631 7098 1.363807 GAAAAAGGTTGCGGCAGCT 59.636 52.632 16.37 7.46 45.42 4.24
6646 7113 1.817447 GCAGCTGCCTTTTGATCTCTT 59.183 47.619 28.76 0.00 34.31 2.85
6647 7114 2.230750 GCAGCTGCCTTTTGATCTCTTT 59.769 45.455 28.76 0.00 34.31 2.52
6648 7115 3.305881 GCAGCTGCCTTTTGATCTCTTTT 60.306 43.478 28.76 0.00 34.31 2.27
6649 7116 4.235360 CAGCTGCCTTTTGATCTCTTTTG 58.765 43.478 0.00 0.00 0.00 2.44
6663 7130 3.621268 TCTCTTTTGTTTGTCACCAGTCG 59.379 43.478 0.00 0.00 0.00 4.18
6712 7179 1.079875 GCCATGGCACGCTTTTGATG 61.080 55.000 32.08 0.00 41.49 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.313905 GTGCACCTACCATACATCATATAAGC 59.686 42.308 5.22 0.00 0.00 3.09
75 76 5.622346 TTGTGCACCTACCATACATCATA 57.378 39.130 15.69 0.00 0.00 2.15
141 142 5.297029 TCCAACTCATGTACTCAGAGATACG 59.703 44.000 3.79 0.00 33.69 3.06
146 147 4.704540 ACTCTCCAACTCATGTACTCAGAG 59.295 45.833 0.00 0.00 35.56 3.35
168 169 2.297701 AGACCACAACACCACATTGAC 58.702 47.619 0.00 0.00 0.00 3.18
187 188 5.576384 ACAAATGTACACAAACAACAGCAAG 59.424 36.000 0.00 0.00 32.02 4.01
251 252 4.692625 AGTGATCTTGTGAGATTTGGAACG 59.307 41.667 0.00 0.00 42.66 3.95
304 348 7.878621 TCTATTCTCTCCAATATGACCCAAT 57.121 36.000 0.00 0.00 0.00 3.16
341 385 6.878317 AGCATCTACGGCAATATGTGTATAT 58.122 36.000 0.00 0.00 0.00 0.86
449 498 1.254026 CGAGTGGGGAGTACTTCACA 58.746 55.000 0.48 0.48 33.01 3.58
467 516 1.153289 CCCAGGATCTCTTGGCACG 60.153 63.158 2.91 0.00 41.31 5.34
649 726 3.303495 CGGATAGTGCTGTTAAACACTCG 59.697 47.826 9.59 5.46 43.55 4.18
745 822 8.910351 AAGAAGTACATTGGAAATATCTAGGC 57.090 34.615 0.00 0.00 0.00 3.93
799 876 8.585471 AAAATCATCTCCTATCTGCAAAGAAA 57.415 30.769 0.00 0.00 0.00 2.52
805 882 8.985315 AACATTAAAATCATCTCCTATCTGCA 57.015 30.769 0.00 0.00 0.00 4.41
1122 1199 4.543590 AGGTGTACTCTGTTCATTCTGG 57.456 45.455 0.00 0.00 0.00 3.86
1296 1472 2.046314 CGGCGGGGTCATTTGAGT 60.046 61.111 0.00 0.00 0.00 3.41
1417 1593 9.650371 CCAGTTATTGATTACAACATTATGTCG 57.350 33.333 0.00 0.00 38.90 4.35
1438 1615 6.808321 TTAAGTGATAGTAGCCATCCAGTT 57.192 37.500 0.00 0.00 0.00 3.16
1527 1750 6.423001 CGTAAGTATTAGCAAACCCTATGACC 59.577 42.308 0.00 0.00 0.00 4.02
1551 1774 4.738252 TGTACTAGCGAATAATGTGCTTCG 59.262 41.667 0.00 0.00 45.27 3.79
1556 1779 6.199154 CAGAGGTTGTACTAGCGAATAATGTG 59.801 42.308 0.92 0.00 0.00 3.21
1565 1788 4.082679 AGACTTTCAGAGGTTGTACTAGCG 60.083 45.833 0.92 0.00 0.00 4.26
1650 1873 2.608059 TATGGTGGCGGTGTCCCA 60.608 61.111 0.00 0.00 0.00 4.37
2010 2234 9.734620 GCAGCACAATAATTGAATAGTGATAAA 57.265 29.630 0.00 0.00 0.00 1.40
2234 2458 8.934023 ATTACCTTTGTGAAGAACCTTCATTA 57.066 30.769 11.90 3.38 34.71 1.90
2270 2494 6.169800 TCATCCATTAGAAACACATGAACGA 58.830 36.000 0.00 0.00 0.00 3.85
2312 2536 2.168313 TCCACTCTCGCTGCATATCAAA 59.832 45.455 0.00 0.00 0.00 2.69
2424 2650 9.434275 TGGAATCTCTACCAGAATACTAATGAA 57.566 33.333 0.00 0.00 33.62 2.57
2552 2778 0.179073 ATGTACTGGATCGGCAGTGC 60.179 55.000 6.55 6.55 35.17 4.40
2556 2782 4.017126 CCTCTATATGTACTGGATCGGCA 58.983 47.826 0.00 0.00 0.00 5.69
2593 2819 5.842907 TGCTATATAGAACGAGTGTGCAAT 58.157 37.500 14.16 0.00 0.00 3.56
2604 2830 7.654116 GTCAGTTCCCTCTTTGCTATATAGAAC 59.346 40.741 14.16 5.89 33.09 3.01
2616 2842 4.453480 TGATTTGGTCAGTTCCCTCTTT 57.547 40.909 0.00 0.00 31.80 2.52
2646 2873 2.429930 CACCCCGACCAGAAGCAA 59.570 61.111 0.00 0.00 0.00 3.91
2661 2888 2.610433 GATTTAGCAAAAGGCCTGCAC 58.390 47.619 16.94 2.91 46.50 4.57
2689 2916 4.342665 GGTCAGTATCCTCTTAACCAGGAG 59.657 50.000 0.00 0.00 43.56 3.69
2745 2977 5.178096 TGGCTACCATTCAATTCTTCAGA 57.822 39.130 0.00 0.00 0.00 3.27
2758 2990 8.636213 CAAGAATTCAAATAGAATGGCTACCAT 58.364 33.333 8.44 0.00 46.09 3.55
2773 3005 5.918011 GCCGTGTAACAATCAAGAATTCAAA 59.082 36.000 8.44 0.00 35.74 2.69
2793 3025 0.466555 TGTTAAAAGGTGCTGGCCGT 60.467 50.000 0.00 0.00 0.00 5.68
2795 3027 1.616159 TCTGTTAAAAGGTGCTGGCC 58.384 50.000 0.00 0.00 0.00 5.36
2796 3028 2.558359 ACATCTGTTAAAAGGTGCTGGC 59.442 45.455 5.77 0.00 30.94 4.85
2831 3065 9.886132 ACACGGAATCAAATATAGTAAGAAACT 57.114 29.630 0.00 0.00 42.62 2.66
2847 3081 6.037062 CAGCAGTTGATATTAACACGGAATCA 59.963 38.462 12.40 0.00 33.02 2.57
2850 3084 4.634004 CCAGCAGTTGATATTAACACGGAA 59.366 41.667 12.40 0.00 33.02 4.30
2854 3088 5.163754 GGTGACCAGCAGTTGATATTAACAC 60.164 44.000 12.40 4.59 33.02 3.32
2915 3149 9.710979 CATGAACAAAATTGGCAATGATAAATC 57.289 29.630 14.47 8.96 0.00 2.17
2925 3159 5.645067 TCAAACAACATGAACAAAATTGGCA 59.355 32.000 0.00 0.00 0.00 4.92
2932 3166 5.692204 ACGTGTTTCAAACAACATGAACAAA 59.308 32.000 4.02 0.00 43.66 2.83
2943 3177 3.880490 AGGATAAGCACGTGTTTCAAACA 59.120 39.130 21.36 0.00 39.52 2.83
2944 3178 4.219033 CAGGATAAGCACGTGTTTCAAAC 58.781 43.478 21.36 10.31 0.00 2.93
2954 3188 1.065701 ACGACTAGCAGGATAAGCACG 59.934 52.381 0.00 0.00 0.00 5.34
2958 3192 3.130516 TGTCCAACGACTAGCAGGATAAG 59.869 47.826 0.00 0.00 39.94 1.73
2974 3208 5.827797 ACAAGAAAGCATCTAGTTTGTCCAA 59.172 36.000 0.00 0.00 37.42 3.53
3022 3256 5.320549 TGTCGGTCTTAGGTAAGAATGAC 57.679 43.478 17.65 17.65 43.30 3.06
3027 3261 5.647658 TCGTTTATGTCGGTCTTAGGTAAGA 59.352 40.000 0.00 0.00 39.82 2.10
3148 3382 9.162764 CGGGAAACAATATACCTTATATTCTGG 57.837 37.037 0.00 0.00 38.85 3.86
3149 3383 9.720769 ACGGGAAACAATATACCTTATATTCTG 57.279 33.333 0.00 0.00 38.85 3.02
3150 3384 9.720769 CACGGGAAACAATATACCTTATATTCT 57.279 33.333 0.00 0.00 38.85 2.40
3151 3385 8.448615 GCACGGGAAACAATATACCTTATATTC 58.551 37.037 0.00 0.00 38.85 1.75
3152 3386 7.940137 TGCACGGGAAACAATATACCTTATATT 59.060 33.333 0.00 0.00 40.91 1.28
3153 3387 7.455058 TGCACGGGAAACAATATACCTTATAT 58.545 34.615 0.00 0.00 32.90 0.86
3154 3388 6.828788 TGCACGGGAAACAATATACCTTATA 58.171 36.000 0.00 0.00 0.00 0.98
3155 3389 5.686753 TGCACGGGAAACAATATACCTTAT 58.313 37.500 0.00 0.00 0.00 1.73
3156 3390 5.100344 TGCACGGGAAACAATATACCTTA 57.900 39.130 0.00 0.00 0.00 2.69
3157 3391 3.958018 TGCACGGGAAACAATATACCTT 58.042 40.909 0.00 0.00 0.00 3.50
3158 3392 3.637911 TGCACGGGAAACAATATACCT 57.362 42.857 0.00 0.00 0.00 3.08
3159 3393 3.692593 ACTTGCACGGGAAACAATATACC 59.307 43.478 0.00 0.00 0.00 2.73
3160 3394 4.393680 TGACTTGCACGGGAAACAATATAC 59.606 41.667 0.00 0.00 0.00 1.47
3161 3395 4.580868 TGACTTGCACGGGAAACAATATA 58.419 39.130 0.00 0.00 0.00 0.86
3162 3396 3.417101 TGACTTGCACGGGAAACAATAT 58.583 40.909 0.00 0.00 0.00 1.28
3163 3397 2.852449 TGACTTGCACGGGAAACAATA 58.148 42.857 0.00 0.00 0.00 1.90
3164 3398 1.686355 TGACTTGCACGGGAAACAAT 58.314 45.000 0.00 0.00 0.00 2.71
3165 3399 1.133407 GTTGACTTGCACGGGAAACAA 59.867 47.619 0.00 0.00 0.00 2.83
3166 3400 0.736053 GTTGACTTGCACGGGAAACA 59.264 50.000 0.00 0.00 0.00 2.83
3167 3401 0.030235 GGTTGACTTGCACGGGAAAC 59.970 55.000 0.00 0.00 0.00 2.78
3168 3402 0.394488 TGGTTGACTTGCACGGGAAA 60.394 50.000 0.00 0.00 0.00 3.13
3169 3403 0.179004 ATGGTTGACTTGCACGGGAA 60.179 50.000 0.00 0.00 0.00 3.97
3170 3404 0.179004 AATGGTTGACTTGCACGGGA 60.179 50.000 0.00 0.00 0.00 5.14
3171 3405 0.673437 AAATGGTTGACTTGCACGGG 59.327 50.000 0.00 0.00 0.00 5.28
3172 3406 1.336440 TCAAATGGTTGACTTGCACGG 59.664 47.619 0.00 0.00 38.88 4.94
3173 3407 2.772568 TCAAATGGTTGACTTGCACG 57.227 45.000 0.00 0.00 38.88 5.34
3174 3408 4.370917 ACATTCAAATGGTTGACTTGCAC 58.629 39.130 7.58 0.00 43.52 4.57
3175 3409 4.669206 ACATTCAAATGGTTGACTTGCA 57.331 36.364 7.58 0.00 43.52 4.08
3176 3410 5.989551 AAACATTCAAATGGTTGACTTGC 57.010 34.783 5.24 0.00 44.21 4.01
3183 3417 6.232581 TCTTGGTCAAACATTCAAATGGTT 57.767 33.333 7.58 4.05 46.69 3.67
3184 3418 5.867903 TCTTGGTCAAACATTCAAATGGT 57.132 34.783 7.58 0.00 40.70 3.55
3247 3481 9.865321 CCATCATGAGAAGTTGTTTCATATTTT 57.135 29.630 0.09 0.00 38.31 1.82
3248 3482 9.246670 TCCATCATGAGAAGTTGTTTCATATTT 57.753 29.630 0.09 0.00 38.31 1.40
3249 3483 8.812513 TCCATCATGAGAAGTTGTTTCATATT 57.187 30.769 0.09 0.00 38.31 1.28
3250 3484 8.991783 ATCCATCATGAGAAGTTGTTTCATAT 57.008 30.769 0.09 0.00 38.31 1.78
3251 3485 8.048514 TGATCCATCATGAGAAGTTGTTTCATA 58.951 33.333 0.09 0.00 38.31 2.15
3252 3486 6.888088 TGATCCATCATGAGAAGTTGTTTCAT 59.112 34.615 0.09 0.00 38.31 2.57
3253 3487 6.240145 TGATCCATCATGAGAAGTTGTTTCA 58.760 36.000 0.09 0.00 38.31 2.69
3254 3488 6.748333 TGATCCATCATGAGAAGTTGTTTC 57.252 37.500 0.09 0.00 35.97 2.78
3255 3489 7.528996 TTTGATCCATCATGAGAAGTTGTTT 57.471 32.000 0.09 0.00 36.56 2.83
3256 3490 7.395206 TCATTTGATCCATCATGAGAAGTTGTT 59.605 33.333 0.09 0.00 36.56 2.83
3257 3491 6.888088 TCATTTGATCCATCATGAGAAGTTGT 59.112 34.615 0.09 0.00 36.56 3.32
3258 3492 7.329588 TCATTTGATCCATCATGAGAAGTTG 57.670 36.000 0.09 0.00 36.56 3.16
3259 3493 9.809395 ATATCATTTGATCCATCATGAGAAGTT 57.191 29.630 0.09 0.00 36.56 2.66
3312 3546 9.410556 CATGATTGACCGAGTTTTTAGAAAAAT 57.589 29.630 3.64 0.00 39.75 1.82
3313 3547 7.865385 CCATGATTGACCGAGTTTTTAGAAAAA 59.135 33.333 0.00 0.00 35.67 1.94
3314 3548 7.367285 CCATGATTGACCGAGTTTTTAGAAAA 58.633 34.615 0.00 0.00 0.00 2.29
3315 3549 6.569610 GCCATGATTGACCGAGTTTTTAGAAA 60.570 38.462 0.00 0.00 0.00 2.52
3316 3550 5.106317 GCCATGATTGACCGAGTTTTTAGAA 60.106 40.000 0.00 0.00 0.00 2.10
3317 3551 4.394920 GCCATGATTGACCGAGTTTTTAGA 59.605 41.667 0.00 0.00 0.00 2.10
3318 3552 4.438744 GGCCATGATTGACCGAGTTTTTAG 60.439 45.833 0.00 0.00 0.00 1.85
3319 3553 3.442273 GGCCATGATTGACCGAGTTTTTA 59.558 43.478 0.00 0.00 0.00 1.52
3320 3554 2.231235 GGCCATGATTGACCGAGTTTTT 59.769 45.455 0.00 0.00 0.00 1.94
3321 3555 1.818674 GGCCATGATTGACCGAGTTTT 59.181 47.619 0.00 0.00 0.00 2.43
3322 3556 1.004745 AGGCCATGATTGACCGAGTTT 59.995 47.619 5.01 0.00 0.00 2.66
3323 3557 0.620556 AGGCCATGATTGACCGAGTT 59.379 50.000 5.01 0.00 0.00 3.01
3324 3558 0.179000 GAGGCCATGATTGACCGAGT 59.821 55.000 5.01 0.00 0.00 4.18
3325 3559 0.877649 CGAGGCCATGATTGACCGAG 60.878 60.000 5.01 0.00 0.00 4.63
3326 3560 1.143838 CGAGGCCATGATTGACCGA 59.856 57.895 5.01 0.00 0.00 4.69
3327 3561 0.744414 AACGAGGCCATGATTGACCG 60.744 55.000 5.01 0.00 0.00 4.79
3328 3562 1.133025 CAAACGAGGCCATGATTGACC 59.867 52.381 5.01 0.00 0.00 4.02
3329 3563 2.083774 TCAAACGAGGCCATGATTGAC 58.916 47.619 5.01 0.00 0.00 3.18
3330 3564 2.083774 GTCAAACGAGGCCATGATTGA 58.916 47.619 5.01 10.65 0.00 2.57
3331 3565 2.086869 AGTCAAACGAGGCCATGATTG 58.913 47.619 5.01 8.24 0.00 2.67
3332 3566 2.496899 AGTCAAACGAGGCCATGATT 57.503 45.000 5.01 0.00 0.00 2.57
3333 3567 2.496899 AAGTCAAACGAGGCCATGAT 57.503 45.000 5.01 0.00 0.00 2.45
3334 3568 2.270352 AAAGTCAAACGAGGCCATGA 57.730 45.000 5.01 0.00 0.00 3.07
3335 3569 2.293122 TCAAAAGTCAAACGAGGCCATG 59.707 45.455 5.01 0.00 0.00 3.66
3336 3570 2.582052 TCAAAAGTCAAACGAGGCCAT 58.418 42.857 5.01 0.00 0.00 4.40
3337 3571 2.045561 TCAAAAGTCAAACGAGGCCA 57.954 45.000 5.01 0.00 0.00 5.36
3338 3572 3.430333 TTTCAAAAGTCAAACGAGGCC 57.570 42.857 0.00 0.00 0.00 5.19
3339 3573 4.032445 GGTTTTTCAAAAGTCAAACGAGGC 59.968 41.667 0.00 0.00 31.11 4.70
3340 3574 5.164954 TGGTTTTTCAAAAGTCAAACGAGG 58.835 37.500 0.00 0.00 31.11 4.63
3341 3575 6.698359 TTGGTTTTTCAAAAGTCAAACGAG 57.302 33.333 0.00 0.00 31.11 4.18
3342 3576 7.659652 ATTTGGTTTTTCAAAAGTCAAACGA 57.340 28.000 12.12 0.00 39.64 3.85
3343 3577 9.813080 TTTATTTGGTTTTTCAAAAGTCAAACG 57.187 25.926 12.12 0.00 39.64 3.60
3347 3581 9.508642 AGGTTTTATTTGGTTTTTCAAAAGTCA 57.491 25.926 0.00 0.00 39.64 3.41
3365 3599 9.788889 CCTCCGTTCCTTTATATAAGGTTTTAT 57.211 33.333 4.13 0.00 38.55 1.40
3366 3600 8.212995 CCCTCCGTTCCTTTATATAAGGTTTTA 58.787 37.037 4.13 0.00 38.55 1.52
3367 3601 7.058525 CCCTCCGTTCCTTTATATAAGGTTTT 58.941 38.462 4.13 0.00 38.55 2.43
3368 3602 6.387807 TCCCTCCGTTCCTTTATATAAGGTTT 59.612 38.462 4.13 0.00 38.55 3.27
3369 3603 5.907079 TCCCTCCGTTCCTTTATATAAGGTT 59.093 40.000 4.13 0.00 38.55 3.50
3370 3604 5.470501 TCCCTCCGTTCCTTTATATAAGGT 58.529 41.667 4.13 0.00 38.55 3.50
3371 3605 5.543020 ACTCCCTCCGTTCCTTTATATAAGG 59.457 44.000 0.00 0.00 38.78 2.69
3372 3606 6.667558 ACTCCCTCCGTTCCTTTATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3373 3607 8.731591 ATTACTCCCTCCGTTCCTTTATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3375 3609 8.912614 ATATTACTCCCTCCGTTCCTTTATAT 57.087 34.615 0.00 0.00 0.00 0.86
3376 3610 8.731591 AATATTACTCCCTCCGTTCCTTTATA 57.268 34.615 0.00 0.00 0.00 0.98
3377 3611 7.628501 AATATTACTCCCTCCGTTCCTTTAT 57.371 36.000 0.00 0.00 0.00 1.40
3378 3612 7.441903 AAATATTACTCCCTCCGTTCCTTTA 57.558 36.000 0.00 0.00 0.00 1.85
3379 3613 5.970501 AATATTACTCCCTCCGTTCCTTT 57.029 39.130 0.00 0.00 0.00 3.11
3380 3614 5.970501 AAATATTACTCCCTCCGTTCCTT 57.029 39.130 0.00 0.00 0.00 3.36
3381 3615 7.441903 TTTAAATATTACTCCCTCCGTTCCT 57.558 36.000 0.00 0.00 0.00 3.36
3382 3616 8.510243 TTTTTAAATATTACTCCCTCCGTTCC 57.490 34.615 0.00 0.00 0.00 3.62
3385 3619 8.909923 CCAATTTTTAAATATTACTCCCTCCGT 58.090 33.333 3.92 0.00 0.00 4.69
3386 3620 8.909923 ACCAATTTTTAAATATTACTCCCTCCG 58.090 33.333 3.92 0.00 0.00 4.63
3486 3730 7.284489 ACAAAGATAACTTGGCAAGTACTCAAA 59.716 33.333 31.34 13.96 41.91 2.69
3547 3791 5.129320 TGACTCCTTTATTGCTAGCATCTGA 59.871 40.000 20.13 3.28 0.00 3.27
4018 4263 3.142951 CCCACAAATAACACTGAACCGA 58.857 45.455 0.00 0.00 0.00 4.69
4152 4400 3.057596 GTCAATCCTGAGCTATCTCCTCG 60.058 52.174 0.00 0.00 38.58 4.63
4240 4488 4.950434 TGGTAAAATAGGTAAACGCTGC 57.050 40.909 0.00 0.00 0.00 5.25
4249 4497 7.784470 TGGTTAGCAAAATGGTAAAATAGGT 57.216 32.000 3.81 0.00 41.29 3.08
4305 4553 6.633634 CGCTGAACTTTGTTTAAAATCCGTTA 59.366 34.615 0.00 0.00 0.00 3.18
4424 4672 7.046033 GCTGTTTAGGCTAGATTTAGGTACAA 58.954 38.462 0.00 0.00 0.00 2.41
4450 4698 2.629617 CCAGCCAATATCCAAATCCACC 59.370 50.000 0.00 0.00 0.00 4.61
4454 4702 4.646492 ACAAGTCCAGCCAATATCCAAATC 59.354 41.667 0.00 0.00 0.00 2.17
4455 4703 4.613437 ACAAGTCCAGCCAATATCCAAAT 58.387 39.130 0.00 0.00 0.00 2.32
4456 4704 4.046286 ACAAGTCCAGCCAATATCCAAA 57.954 40.909 0.00 0.00 0.00 3.28
4458 4706 3.737559 AACAAGTCCAGCCAATATCCA 57.262 42.857 0.00 0.00 0.00 3.41
4463 4712 4.344679 TCAATTCAAACAAGTCCAGCCAAT 59.655 37.500 0.00 0.00 0.00 3.16
4467 4716 4.540824 GAGTCAATTCAAACAAGTCCAGC 58.459 43.478 0.00 0.00 0.00 4.85
4468 4717 4.580167 TGGAGTCAATTCAAACAAGTCCAG 59.420 41.667 0.00 0.00 35.14 3.86
4476 4725 5.665916 ATTCCCATGGAGTCAATTCAAAC 57.334 39.130 15.22 0.00 31.21 2.93
4479 4728 7.356680 AGAAATATTCCCATGGAGTCAATTCA 58.643 34.615 15.22 0.00 31.21 2.57
4480 4729 7.830099 AGAAATATTCCCATGGAGTCAATTC 57.170 36.000 15.22 10.77 31.21 2.17
4481 4730 9.887862 ATTAGAAATATTCCCATGGAGTCAATT 57.112 29.630 15.22 3.47 31.21 2.32
4514 4764 1.335496 CATGCATGCCGACAATGATCA 59.665 47.619 14.93 0.00 0.00 2.92
4550 4800 2.747989 TCACTGTTCTAGACTACTGGCG 59.252 50.000 0.00 0.00 0.00 5.69
4576 4826 7.363181 CCATCCATTGAAGATGCTACAGAAAAA 60.363 37.037 0.00 0.00 39.87 1.94
4586 4836 4.859304 TTATGCCATCCATTGAAGATGC 57.141 40.909 0.00 0.00 39.87 3.91
4587 4837 6.433093 TCAGATTATGCCATCCATTGAAGATG 59.567 38.462 0.00 0.00 40.71 2.90
4625 4876 7.935520 TCAGACAATGTTTGCACACTTATTTA 58.064 30.769 4.37 0.00 35.03 1.40
4631 4882 4.717233 TTTCAGACAATGTTTGCACACT 57.283 36.364 4.37 0.00 35.03 3.55
4632 4883 5.776519 TTTTTCAGACAATGTTTGCACAC 57.223 34.783 0.00 0.00 35.03 3.82
4662 4913 0.744281 TCTGCGATGCTGGTTCGATA 59.256 50.000 0.00 0.00 38.88 2.92
4663 4914 0.529337 CTCTGCGATGCTGGTTCGAT 60.529 55.000 0.00 0.00 38.88 3.59
4664 4915 1.153765 CTCTGCGATGCTGGTTCGA 60.154 57.895 0.00 0.00 38.88 3.71
4665 4916 1.144565 CTCTCTGCGATGCTGGTTCG 61.145 60.000 0.00 0.00 39.55 3.95
4669 4922 0.108472 TGTTCTCTCTGCGATGCTGG 60.108 55.000 0.00 0.00 0.00 4.85
4673 4926 2.159128 AGTCCATGTTCTCTCTGCGATG 60.159 50.000 0.00 0.00 0.00 3.84
4677 4930 3.876274 TGTAGTCCATGTTCTCTCTGC 57.124 47.619 0.00 0.00 0.00 4.26
4678 4931 5.139435 TGTTGTAGTCCATGTTCTCTCTG 57.861 43.478 0.00 0.00 0.00 3.35
4684 4937 9.341899 GTTATTCAAATGTTGTAGTCCATGTTC 57.658 33.333 0.00 0.00 0.00 3.18
4712 4965 5.806654 AAATGCAGGTACCAGTTTTCATT 57.193 34.783 15.94 8.21 0.00 2.57
4715 4968 4.226761 CGAAAATGCAGGTACCAGTTTTC 58.773 43.478 15.94 19.77 31.56 2.29
4729 4982 3.435566 GCTTTTAGCCCTACGAAAATGC 58.564 45.455 0.00 0.00 33.21 3.56
4737 4990 5.583457 TCAAGTAATTCGCTTTTAGCCCTAC 59.417 40.000 0.00 0.00 38.18 3.18
4743 4996 7.117241 TGTGTCTCAAGTAATTCGCTTTTAG 57.883 36.000 0.00 0.00 0.00 1.85
4753 5006 8.682936 AAAGTTGAAGATGTGTCTCAAGTAAT 57.317 30.769 0.00 0.00 32.15 1.89
4785 5038 5.069318 TGCATGACTTCAGGAACAAATGTA 58.931 37.500 0.00 0.00 0.00 2.29
4791 5044 3.144657 ACATGCATGACTTCAGGAACA 57.855 42.857 32.75 0.00 0.00 3.18
4827 5080 8.793592 ACCTAAATTTTTATCGGCAGGATATTC 58.206 33.333 6.41 0.00 37.46 1.75
4830 5083 7.284074 TGACCTAAATTTTTATCGGCAGGATA 58.716 34.615 6.41 0.00 36.55 2.59
4864 5118 6.603201 TCAGAGCCAGGAAATAACCAAATAAG 59.397 38.462 0.00 0.00 0.00 1.73
4867 5121 4.934356 TCAGAGCCAGGAAATAACCAAAT 58.066 39.130 0.00 0.00 0.00 2.32
4878 5132 0.325577 TGCAGGTATCAGAGCCAGGA 60.326 55.000 0.00 0.00 0.00 3.86
4882 5136 2.855209 ATCATGCAGGTATCAGAGCC 57.145 50.000 0.00 0.00 0.00 4.70
4903 5157 3.733727 GCCAAAACAACCAACTATGAACG 59.266 43.478 0.00 0.00 0.00 3.95
4932 5186 1.433534 GCTAGCAGCGTGAAAGTTCT 58.566 50.000 10.63 0.00 0.00 3.01
4933 5187 3.957474 GCTAGCAGCGTGAAAGTTC 57.043 52.632 10.63 0.00 0.00 3.01
4943 5197 1.925185 GTAACTTGGTACGCTAGCAGC 59.075 52.381 16.45 6.41 37.49 5.25
4944 5198 2.094390 TGGTAACTTGGTACGCTAGCAG 60.094 50.000 16.45 10.16 37.49 4.24
4952 5206 7.789026 AGTAGATATGGTTGGTAACTTGGTAC 58.211 38.462 0.00 0.00 37.61 3.34
4995 5249 2.738587 TTTGGGTACAGCAGTTTCCA 57.261 45.000 0.00 0.00 0.00 3.53
4996 5250 5.650543 CATAATTTGGGTACAGCAGTTTCC 58.349 41.667 0.00 0.00 0.00 3.13
5010 5264 1.071071 CCCAGCCATGGCATAATTTGG 59.929 52.381 37.18 31.00 46.19 3.28
5015 5269 0.922626 TACACCCAGCCATGGCATAA 59.077 50.000 37.18 13.07 46.19 1.90
5038 5293 6.262944 TGACATCACACATATAATTTGAGCCC 59.737 38.462 0.00 0.00 0.00 5.19
5042 5297 8.454570 AGCATGACATCACACATATAATTTGA 57.545 30.769 0.00 0.00 0.00 2.69
5050 5305 8.400186 CAAAGAAATAGCATGACATCACACATA 58.600 33.333 0.00 0.00 0.00 2.29
5053 5308 6.032094 CCAAAGAAATAGCATGACATCACAC 58.968 40.000 0.00 0.00 0.00 3.82
5056 5311 7.177216 ACTTTCCAAAGAAATAGCATGACATCA 59.823 33.333 6.05 0.00 41.12 3.07
5057 5312 7.487189 CACTTTCCAAAGAAATAGCATGACATC 59.513 37.037 6.05 0.00 41.12 3.06
5104 5359 8.974408 GGTTTTCCTATTCATGTGTTTGTAAAC 58.026 33.333 0.65 0.65 36.90 2.01
5110 5365 6.295802 CCCATGGTTTTCCTATTCATGTGTTT 60.296 38.462 11.73 0.00 41.38 2.83
5118 5373 7.290014 ACCAATATTCCCATGGTTTTCCTATTC 59.710 37.037 11.73 0.00 44.92 1.75
5124 5379 5.675684 ACACCAATATTCCCATGGTTTTC 57.324 39.130 11.73 0.00 44.92 2.29
5176 5431 5.188327 TCCTGCATTCTTCGTGTCTATAG 57.812 43.478 0.00 0.00 0.00 1.31
5202 5457 7.119997 CGTGTTTTTCTCTCTTTTGTGTCTAG 58.880 38.462 0.00 0.00 0.00 2.43
5209 5464 6.772078 ACACTACGTGTTTTTCTCTCTTTTG 58.228 36.000 0.00 0.00 45.08 2.44
5224 5479 5.068234 TGGAGGAAGATTAACACTACGTG 57.932 43.478 0.00 0.00 39.75 4.49
5225 5480 5.733620 TTGGAGGAAGATTAACACTACGT 57.266 39.130 0.00 0.00 0.00 3.57
5226 5481 7.201617 GGAATTTGGAGGAAGATTAACACTACG 60.202 40.741 0.00 0.00 0.00 3.51
5227 5482 7.829706 AGGAATTTGGAGGAAGATTAACACTAC 59.170 37.037 0.00 0.00 0.00 2.73
5230 5496 8.624776 CATAGGAATTTGGAGGAAGATTAACAC 58.375 37.037 0.00 0.00 0.00 3.32
5252 5518 5.251764 CCTGAGAAATGGCCTATTCCATAG 58.748 45.833 14.92 11.29 45.64 2.23
5253 5519 4.043310 CCCTGAGAAATGGCCTATTCCATA 59.957 45.833 14.92 4.31 45.64 2.74
5255 5521 2.175499 CCCTGAGAAATGGCCTATTCCA 59.825 50.000 14.92 12.06 40.97 3.53
5256 5522 2.868899 CCCTGAGAAATGGCCTATTCC 58.131 52.381 14.92 9.01 0.00 3.01
5257 5523 2.234143 GCCCTGAGAAATGGCCTATTC 58.766 52.381 3.32 8.70 39.30 1.75
5258 5524 1.570501 TGCCCTGAGAAATGGCCTATT 59.429 47.619 3.32 0.00 44.72 1.73
5259 5525 1.225373 TGCCCTGAGAAATGGCCTAT 58.775 50.000 3.32 0.00 44.72 2.57
5260 5526 0.998928 TTGCCCTGAGAAATGGCCTA 59.001 50.000 3.32 0.00 44.72 3.93
5277 5543 4.863689 CGAATAGCTAGCTCATCAGGATTG 59.136 45.833 23.26 5.11 0.00 2.67
5371 5637 3.920412 GCGTCCTTTTGGCATAAAGAAAG 59.080 43.478 17.83 11.11 37.31 2.62
5431 5722 6.849085 AACACCATTCATAAGGCAACATAA 57.151 33.333 0.00 0.00 41.41 1.90
5445 5736 5.914033 TCAGCCTGTAGTATAACACCATTC 58.086 41.667 0.00 0.00 0.00 2.67
5523 5816 6.920210 CCTGAAGTTGTTTCAATTCTTCCTTC 59.080 38.462 0.00 0.00 44.84 3.46
5586 5879 6.902224 AAACACAAGGAAAAACTTACATGC 57.098 33.333 0.00 0.00 0.00 4.06
5601 5894 8.783093 TGAGGATCTACACAATAAAAACACAAG 58.217 33.333 0.00 0.00 34.92 3.16
5604 5897 9.612620 CTTTGAGGATCTACACAATAAAAACAC 57.387 33.333 0.00 0.00 34.92 3.32
5660 5956 7.201470 GCTTTAAGCTTTTCCTGCAATCATTAC 60.201 37.037 10.01 0.00 38.45 1.89
5702 5998 2.802247 GCTTCACAAGTTTCCATTTGGC 59.198 45.455 0.00 0.00 34.44 4.52
5827 6127 5.412904 CACCTCCAGTTTATCTGAAAAGGTC 59.587 44.000 10.93 0.00 46.27 3.85
5881 6181 7.148373 GCCAAAAATCTAATTGCACACATGAAT 60.148 33.333 0.00 0.00 0.00 2.57
6004 6306 4.637483 TCTCACACAAAAGCAGGAAAAG 57.363 40.909 0.00 0.00 0.00 2.27
6156 6465 6.341316 ACAGCATACACATTAGTAACTCTGG 58.659 40.000 0.00 0.00 0.00 3.86
6191 6504 9.234827 CCTTTGGTAATATGATGCAAGATCATA 57.765 33.333 10.18 10.18 42.90 2.15
6193 6506 7.289310 TCCTTTGGTAATATGATGCAAGATCA 58.711 34.615 0.00 0.00 0.00 2.92
6194 6507 7.750229 TCCTTTGGTAATATGATGCAAGATC 57.250 36.000 0.00 0.00 0.00 2.75
6195 6508 7.177921 CCATCCTTTGGTAATATGATGCAAGAT 59.822 37.037 0.00 0.00 40.99 2.40
6196 6509 6.491062 CCATCCTTTGGTAATATGATGCAAGA 59.509 38.462 0.00 0.00 40.99 3.02
6277 6702 8.711457 GCTTGCAAACTATAATGAAAATTGTGT 58.289 29.630 0.00 0.00 0.00 3.72
6290 6715 4.272504 GCCGACATAAGCTTGCAAACTATA 59.727 41.667 9.86 0.00 0.00 1.31
6302 6727 0.373716 CTGAAACCGCCGACATAAGC 59.626 55.000 0.00 0.00 0.00 3.09
6303 6728 2.004583 TCTGAAACCGCCGACATAAG 57.995 50.000 0.00 0.00 0.00 1.73
6314 6759 7.507733 AGATGAGATTTATGCATCTGAAACC 57.492 36.000 0.19 0.00 45.02 3.27
6323 6768 9.511272 AATTGCACTATAGATGAGATTTATGCA 57.489 29.630 6.78 5.05 37.56 3.96
6388 6835 5.523552 TCAACATGTATCTCGCAATCGATTT 59.476 36.000 8.21 0.00 44.56 2.17
6422 6869 0.752376 GACTGGGCTAGAGCTACGGT 60.752 60.000 4.33 9.83 41.70 4.83
6423 6870 0.752009 TGACTGGGCTAGAGCTACGG 60.752 60.000 4.33 3.15 41.70 4.02
6439 6886 7.777095 AGAGTGGATAGATCAACTAAAGTGAC 58.223 38.462 0.00 0.00 41.08 3.67
6449 6896 9.658799 CAGAAAGTAAAAGAGTGGATAGATCAA 57.341 33.333 0.00 0.00 0.00 2.57
6450 6897 8.816894 ACAGAAAGTAAAAGAGTGGATAGATCA 58.183 33.333 0.00 0.00 0.00 2.92
6509 6976 6.822170 GGACGGGTAAAAAGAAGAGAATGTAT 59.178 38.462 0.00 0.00 0.00 2.29
6534 7001 4.641094 ACTGGAGATAGACTCTGGTAAACG 59.359 45.833 0.00 0.00 44.37 3.60
6540 7007 5.047021 TGTTTCAACTGGAGATAGACTCTGG 60.047 44.000 0.00 0.00 44.37 3.86
6541 7008 6.030548 TGTTTCAACTGGAGATAGACTCTG 57.969 41.667 0.00 0.00 44.37 3.35
6555 7022 3.442273 TGCGAAGACCTTTTGTTTCAACT 59.558 39.130 0.00 0.00 0.00 3.16
6570 7037 4.223477 TGATGGATATCATGGATGCGAAGA 59.777 41.667 4.83 0.00 38.37 2.87
6572 7039 4.556592 TGATGGATATCATGGATGCGAA 57.443 40.909 4.83 0.00 38.37 4.70
6580 7047 7.229907 TGTTTGAACAGGATGATGGATATCATG 59.770 37.037 7.44 0.00 42.29 3.07
6581 7048 7.292319 TGTTTGAACAGGATGATGGATATCAT 58.708 34.615 4.83 2.63 43.44 2.45
6582 7049 6.661777 TGTTTGAACAGGATGATGGATATCA 58.338 36.000 4.83 0.00 39.69 2.15
6583 7050 7.446319 TCATGTTTGAACAGGATGATGGATATC 59.554 37.037 7.09 0.00 43.80 1.63
6584 7051 7.292319 TCATGTTTGAACAGGATGATGGATAT 58.708 34.615 7.09 0.00 43.80 1.63
6585 7052 6.661777 TCATGTTTGAACAGGATGATGGATA 58.338 36.000 7.09 0.00 43.80 2.59
6611 7078 1.006220 CTGCCGCAACCTTTTTCCC 60.006 57.895 0.00 0.00 0.00 3.97
6627 7094 4.235360 CAAAAGAGATCAAAAGGCAGCTG 58.765 43.478 10.11 10.11 0.00 4.24
6628 7095 3.893813 ACAAAAGAGATCAAAAGGCAGCT 59.106 39.130 0.00 0.00 0.00 4.24
6631 7098 5.976458 ACAAACAAAAGAGATCAAAAGGCA 58.024 33.333 0.00 0.00 0.00 4.75
6646 7113 1.384525 CCCGACTGGTGACAAACAAA 58.615 50.000 0.00 0.00 42.06 2.83
6647 7114 1.098712 GCCCGACTGGTGACAAACAA 61.099 55.000 0.00 0.00 42.06 2.83
6648 7115 1.525077 GCCCGACTGGTGACAAACA 60.525 57.895 0.00 0.00 42.06 2.83
6649 7116 3.340789 GCCCGACTGGTGACAAAC 58.659 61.111 0.00 0.00 42.06 2.93
6663 7130 0.729140 CGTGATTGACAAAAGCGCCC 60.729 55.000 2.29 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.