Multiple sequence alignment - TraesCS4D01G230100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G230100 chr4D 100.000 4685 0 0 1 4685 389581461 389576777 0.000000e+00 8652.0
1 TraesCS4D01G230100 chr4D 94.521 73 3 1 1 73 466440525 466440596 1.380000e-20 111.0
2 TraesCS4D01G230100 chr4D 85.149 101 8 7 1 98 274404161 274404257 3.860000e-16 97.1
3 TraesCS4D01G230100 chr4B 96.065 3380 106 16 553 3914 479682057 479678687 0.000000e+00 5480.0
4 TraesCS4D01G230100 chr4B 96.641 774 24 2 3913 4685 479678631 479677859 0.000000e+00 1284.0
5 TraesCS4D01G230100 chr4A 98.038 3007 57 1 770 3774 71259222 71256216 0.000000e+00 5225.0
6 TraesCS4D01G230100 chr4A 94.237 590 16 8 4113 4685 71255475 71254887 0.000000e+00 885.0
7 TraesCS4D01G230100 chr4A 96.316 380 12 1 3771 4150 71256094 71255717 1.430000e-174 623.0
8 TraesCS4D01G230100 chr7D 89.412 425 42 3 66 488 231100416 231099993 2.480000e-147 532.0
9 TraesCS4D01G230100 chr3D 87.799 418 48 3 66 482 518541644 518541229 1.960000e-133 486.0
10 TraesCS4D01G230100 chr7B 84.360 422 65 1 66 486 218802571 218802150 3.370000e-111 412.0
11 TraesCS4D01G230100 chr3B 84.161 423 63 4 66 486 355096068 355095648 1.570000e-109 407.0
12 TraesCS4D01G230100 chr2A 85.204 392 57 1 96 486 459612495 459612886 7.300000e-108 401.0
13 TraesCS4D01G230100 chr5D 83.175 422 70 1 66 486 281003961 281003540 7.350000e-103 385.0
14 TraesCS4D01G230100 chr5D 93.421 76 4 1 4 79 294181412 294181338 1.380000e-20 111.0
15 TraesCS4D01G230100 chr2D 83.413 416 66 2 66 480 262924554 262924967 2.640000e-102 383.0
16 TraesCS4D01G230100 chr2D 83.173 416 67 2 66 480 262816422 262816835 1.230000e-100 377.0
17 TraesCS4D01G230100 chr5B 82.921 404 68 1 77 479 210094681 210094278 3.450000e-96 363.0
18 TraesCS4D01G230100 chr7A 97.059 68 2 0 1 68 317212971 317212904 1.070000e-21 115.0
19 TraesCS4D01G230100 chrUn 91.463 82 6 1 1 82 299578127 299578047 1.380000e-20 111.0
20 TraesCS4D01G230100 chrUn 91.463 82 6 1 1 82 299582890 299582810 1.380000e-20 111.0
21 TraesCS4D01G230100 chrUn 91.463 82 6 1 1 82 335768223 335768143 1.380000e-20 111.0
22 TraesCS4D01G230100 chr1D 94.444 72 3 1 4 75 258598304 258598234 4.960000e-20 110.0
23 TraesCS4D01G230100 chr1B 89.011 91 5 5 4 92 327598155 327598068 1.780000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G230100 chr4D 389576777 389581461 4684 True 8652.000000 8652 100.000 1 4685 1 chr4D.!!$R1 4684
1 TraesCS4D01G230100 chr4B 479677859 479682057 4198 True 3382.000000 5480 96.353 553 4685 2 chr4B.!!$R1 4132
2 TraesCS4D01G230100 chr4A 71254887 71259222 4335 True 2244.333333 5225 96.197 770 4685 3 chr4A.!!$R1 3915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 307 0.033504 GAGGAACTGGCACTTCGTCA 59.966 55.000 18.44 0.00 41.55 4.35 F
1365 1390 0.033228 TCTTTTTCCCGTACGGCGAA 59.967 50.000 29.15 26.70 44.77 4.70 F
1839 1864 0.461163 CGCAACCGTGGATGGTGATA 60.461 55.000 0.00 0.00 42.89 2.15 F
1968 1993 0.558712 AAGTTGGGTTGCCAGGGTTA 59.441 50.000 0.00 0.00 0.00 2.85 F
2360 2385 1.473677 GTATTGTGGCTGCAGCAATGA 59.526 47.619 37.63 20.84 44.36 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1799 0.967380 CCCCAGTCTTCACCATTGCC 60.967 60.000 0.00 0.0 0.00 4.52 R
2784 2809 0.387622 CCTCTGCAAATGCCAACACG 60.388 55.000 2.46 0.0 41.18 4.49 R
3462 3487 1.064017 AGTGTCCCAGCTTTTCCACAA 60.064 47.619 6.23 0.0 0.00 3.33 R
3480 3505 1.425066 TGTTCAGGCCCAGAATCAAGT 59.575 47.619 11.03 0.0 0.00 3.16 R
4135 4343 0.544697 ACTACGGCCCTGGTTAATGG 59.455 55.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.070429 CTTTACTTTGCGGCATCATCC 57.930 47.619 2.28 0.00 0.00 3.51
21 22 2.418368 TTACTTTGCGGCATCATCCT 57.582 45.000 2.28 0.00 0.00 3.24
22 23 2.418368 TACTTTGCGGCATCATCCTT 57.582 45.000 2.28 0.00 0.00 3.36
23 24 1.549203 ACTTTGCGGCATCATCCTTT 58.451 45.000 2.28 0.00 0.00 3.11
24 25 1.474077 ACTTTGCGGCATCATCCTTTC 59.526 47.619 2.28 0.00 0.00 2.62
25 26 0.817013 TTTGCGGCATCATCCTTTCC 59.183 50.000 2.28 0.00 0.00 3.13
26 27 0.034186 TTGCGGCATCATCCTTTCCT 60.034 50.000 2.28 0.00 0.00 3.36
27 28 0.464373 TGCGGCATCATCCTTTCCTC 60.464 55.000 0.00 0.00 0.00 3.71
28 29 0.179034 GCGGCATCATCCTTTCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
29 30 1.748591 GCGGCATCATCCTTTCCTCTT 60.749 52.381 0.00 0.00 0.00 2.85
30 31 2.216898 CGGCATCATCCTTTCCTCTTC 58.783 52.381 0.00 0.00 0.00 2.87
31 32 2.420547 CGGCATCATCCTTTCCTCTTCA 60.421 50.000 0.00 0.00 0.00 3.02
32 33 3.624777 GGCATCATCCTTTCCTCTTCAA 58.375 45.455 0.00 0.00 0.00 2.69
33 34 3.631227 GGCATCATCCTTTCCTCTTCAAG 59.369 47.826 0.00 0.00 0.00 3.02
35 36 4.205587 CATCATCCTTTCCTCTTCAAGGG 58.794 47.826 0.00 0.00 46.23 3.95
36 37 3.531059 TCATCCTTTCCTCTTCAAGGGA 58.469 45.455 0.00 0.00 46.23 4.20
37 38 3.916349 TCATCCTTTCCTCTTCAAGGGAA 59.084 43.478 3.83 3.83 46.23 3.97
38 39 4.353788 TCATCCTTTCCTCTTCAAGGGAAA 59.646 41.667 15.43 15.43 42.49 3.13
39 40 4.806952 TCCTTTCCTCTTCAAGGGAAAA 57.193 40.909 16.45 0.00 42.49 2.29
40 41 5.137412 TCCTTTCCTCTTCAAGGGAAAAA 57.863 39.130 16.45 8.66 42.49 1.94
41 42 4.893524 TCCTTTCCTCTTCAAGGGAAAAAC 59.106 41.667 16.45 0.00 42.49 2.43
42 43 4.039245 CCTTTCCTCTTCAAGGGAAAAACC 59.961 45.833 16.45 0.00 42.49 3.27
43 44 3.963476 TCCTCTTCAAGGGAAAAACCA 57.037 42.857 0.00 0.00 46.23 3.67
44 45 4.258457 TCCTCTTCAAGGGAAAAACCAA 57.742 40.909 0.00 0.00 46.23 3.67
45 46 3.958147 TCCTCTTCAAGGGAAAAACCAAC 59.042 43.478 0.00 0.00 46.23 3.77
46 47 3.243401 CCTCTTCAAGGGAAAAACCAACG 60.243 47.826 0.00 0.00 42.03 4.10
47 48 2.100087 TCTTCAAGGGAAAAACCAACGC 59.900 45.455 0.00 0.00 41.20 4.84
48 49 1.475403 TCAAGGGAAAAACCAACGCA 58.525 45.000 0.00 0.00 41.20 5.24
49 50 1.825474 TCAAGGGAAAAACCAACGCAA 59.175 42.857 0.00 0.00 41.20 4.85
50 51 2.159170 TCAAGGGAAAAACCAACGCAAG 60.159 45.455 0.00 0.00 41.20 4.01
51 52 0.104120 AGGGAAAAACCAACGCAAGC 59.896 50.000 0.00 0.00 40.59 4.01
52 53 0.104120 GGGAAAAACCAACGCAAGCT 59.896 50.000 0.00 0.00 40.59 3.74
53 54 1.487482 GGAAAAACCAACGCAAGCTC 58.513 50.000 0.00 0.00 39.02 4.09
54 55 1.202359 GGAAAAACCAACGCAAGCTCA 60.202 47.619 0.00 0.00 39.02 4.26
55 56 2.535331 GAAAAACCAACGCAAGCTCAA 58.465 42.857 0.00 0.00 45.62 3.02
56 57 2.208326 AAAACCAACGCAAGCTCAAG 57.792 45.000 0.00 0.00 45.62 3.02
57 58 1.388547 AAACCAACGCAAGCTCAAGA 58.611 45.000 0.00 0.00 45.62 3.02
58 59 1.388547 AACCAACGCAAGCTCAAGAA 58.611 45.000 0.00 0.00 45.62 2.52
59 60 0.947244 ACCAACGCAAGCTCAAGAAG 59.053 50.000 0.00 0.00 45.62 2.85
60 61 0.947244 CCAACGCAAGCTCAAGAAGT 59.053 50.000 0.00 0.00 45.62 3.01
61 62 2.143122 CCAACGCAAGCTCAAGAAGTA 58.857 47.619 0.00 0.00 45.62 2.24
62 63 2.158449 CCAACGCAAGCTCAAGAAGTAG 59.842 50.000 0.00 0.00 45.62 2.57
63 64 1.433534 ACGCAAGCTCAAGAAGTAGC 58.566 50.000 0.00 0.00 45.62 3.58
64 65 1.270305 ACGCAAGCTCAAGAAGTAGCA 60.270 47.619 0.00 0.00 41.32 3.49
65 66 1.800586 CGCAAGCTCAAGAAGTAGCAA 59.199 47.619 0.00 0.00 41.32 3.91
66 67 2.417933 CGCAAGCTCAAGAAGTAGCAAT 59.582 45.455 0.00 0.00 41.32 3.56
67 68 3.484886 CGCAAGCTCAAGAAGTAGCAATC 60.485 47.826 0.00 0.00 41.32 2.67
68 69 3.688673 GCAAGCTCAAGAAGTAGCAATCT 59.311 43.478 0.00 0.00 41.32 2.40
69 70 4.201802 GCAAGCTCAAGAAGTAGCAATCTC 60.202 45.833 0.00 0.00 41.32 2.75
70 71 3.779759 AGCTCAAGAAGTAGCAATCTCG 58.220 45.455 0.00 0.00 41.32 4.04
71 72 2.283884 GCTCAAGAAGTAGCAATCTCGC 59.716 50.000 0.00 0.00 38.63 5.03
72 73 3.515630 CTCAAGAAGTAGCAATCTCGCA 58.484 45.455 0.00 0.00 0.00 5.10
73 74 3.515630 TCAAGAAGTAGCAATCTCGCAG 58.484 45.455 0.00 0.00 0.00 5.18
74 75 3.193479 TCAAGAAGTAGCAATCTCGCAGA 59.807 43.478 0.00 0.00 0.00 4.26
75 76 3.157932 AGAAGTAGCAATCTCGCAGAC 57.842 47.619 0.00 0.00 0.00 3.51
76 77 2.493675 AGAAGTAGCAATCTCGCAGACA 59.506 45.455 0.00 0.00 0.00 3.41
77 78 3.056536 AGAAGTAGCAATCTCGCAGACAA 60.057 43.478 0.00 0.00 0.00 3.18
78 79 2.611518 AGTAGCAATCTCGCAGACAAC 58.388 47.619 0.00 0.00 0.00 3.32
79 80 2.232452 AGTAGCAATCTCGCAGACAACT 59.768 45.455 0.00 0.00 0.00 3.16
80 81 1.719600 AGCAATCTCGCAGACAACTC 58.280 50.000 0.00 0.00 0.00 3.01
81 82 0.723981 GCAATCTCGCAGACAACTCC 59.276 55.000 0.00 0.00 0.00 3.85
82 83 0.994995 CAATCTCGCAGACAACTCCG 59.005 55.000 0.00 0.00 0.00 4.63
83 84 0.737715 AATCTCGCAGACAACTCCGC 60.738 55.000 0.00 0.00 0.00 5.54
86 87 3.470567 CGCAGACAACTCCGCGTC 61.471 66.667 4.92 0.00 42.66 5.19
87 88 2.049063 GCAGACAACTCCGCGTCT 60.049 61.111 4.92 0.00 43.23 4.18
89 90 2.651361 AGACAACTCCGCGTCTGG 59.349 61.111 4.92 0.00 40.92 3.86
90 91 2.201022 AGACAACTCCGCGTCTGGT 61.201 57.895 4.92 0.00 40.92 4.00
91 92 2.022129 GACAACTCCGCGTCTGGTG 61.022 63.158 4.92 6.03 0.00 4.17
93 94 4.003788 AACTCCGCGTCTGGTGGG 62.004 66.667 4.92 0.00 46.77 4.61
95 96 3.066190 CTCCGCGTCTGGTGGGTA 61.066 66.667 4.92 0.00 46.77 3.69
96 97 3.352338 CTCCGCGTCTGGTGGGTAC 62.352 68.421 4.92 0.00 46.77 3.34
97 98 3.687102 CCGCGTCTGGTGGGTACA 61.687 66.667 4.92 0.00 42.90 2.90
98 99 2.431942 CGCGTCTGGTGGGTACAC 60.432 66.667 0.00 0.00 46.97 2.90
111 112 2.975732 GGTACACCCTTGCCTACTAC 57.024 55.000 0.00 0.00 0.00 2.73
112 113 1.135721 GGTACACCCTTGCCTACTACG 59.864 57.143 0.00 0.00 0.00 3.51
113 114 2.094675 GTACACCCTTGCCTACTACGA 58.905 52.381 0.00 0.00 0.00 3.43
114 115 0.893447 ACACCCTTGCCTACTACGAC 59.107 55.000 0.00 0.00 0.00 4.34
115 116 0.179145 CACCCTTGCCTACTACGACG 60.179 60.000 0.00 0.00 0.00 5.12
116 117 1.318158 ACCCTTGCCTACTACGACGG 61.318 60.000 0.00 0.00 0.00 4.79
117 118 1.226888 CCTTGCCTACTACGACGGC 60.227 63.158 0.00 0.00 44.02 5.68
118 119 1.585521 CTTGCCTACTACGACGGCG 60.586 63.158 10.39 10.39 46.67 6.46
119 120 1.985447 CTTGCCTACTACGACGGCGA 61.985 60.000 22.49 0.00 46.67 5.54
120 121 1.985447 TTGCCTACTACGACGGCGAG 61.985 60.000 22.49 13.66 46.67 5.03
121 122 2.467826 GCCTACTACGACGGCGAGT 61.468 63.158 22.49 19.28 41.64 4.18
122 123 1.640604 CCTACTACGACGGCGAGTC 59.359 63.158 22.49 0.00 46.16 3.36
134 135 2.827190 CGAGTCATCGGTCGGGGA 60.827 66.667 0.00 0.00 45.39 4.81
135 136 2.806237 GAGTCATCGGTCGGGGAC 59.194 66.667 7.05 7.05 0.00 4.46
136 137 2.036731 AGTCATCGGTCGGGGACA 59.963 61.111 14.10 0.00 33.68 4.02
137 138 2.183555 GTCATCGGTCGGGGACAC 59.816 66.667 9.26 0.00 33.68 3.67
138 139 2.036731 TCATCGGTCGGGGACACT 59.963 61.111 0.00 0.00 33.68 3.55
139 140 2.184322 CATCGGTCGGGGACACTG 59.816 66.667 0.00 0.00 33.68 3.66
140 141 2.036731 ATCGGTCGGGGACACTGA 59.963 61.111 0.00 0.00 33.68 3.41
141 142 2.052690 ATCGGTCGGGGACACTGAG 61.053 63.158 0.00 0.00 34.43 3.35
142 143 2.783122 ATCGGTCGGGGACACTGAGT 62.783 60.000 0.00 0.00 34.43 3.41
143 144 2.971452 GGTCGGGGACACTGAGTC 59.029 66.667 0.00 0.00 46.83 3.36
152 153 0.741915 GACACTGAGTCGATCCTCCC 59.258 60.000 0.99 0.00 37.53 4.30
153 154 1.032657 ACACTGAGTCGATCCTCCCG 61.033 60.000 0.99 0.00 0.00 5.14
154 155 2.122167 ACTGAGTCGATCCTCCCGC 61.122 63.158 0.99 0.00 0.00 6.13
155 156 1.826054 CTGAGTCGATCCTCCCGCT 60.826 63.158 0.99 0.00 0.00 5.52
156 157 2.069465 CTGAGTCGATCCTCCCGCTG 62.069 65.000 0.99 0.00 0.00 5.18
157 158 2.043852 AGTCGATCCTCCCGCTGT 60.044 61.111 0.00 0.00 0.00 4.40
158 159 0.818445 GAGTCGATCCTCCCGCTGTA 60.818 60.000 0.00 0.00 0.00 2.74
159 160 1.102222 AGTCGATCCTCCCGCTGTAC 61.102 60.000 0.00 0.00 0.00 2.90
160 161 2.184830 TCGATCCTCCCGCTGTACG 61.185 63.158 0.00 0.00 43.15 3.67
170 171 3.834799 GCTGTACGGCGGTAGGCT 61.835 66.667 11.68 0.00 42.94 4.58
171 172 2.890371 CTGTACGGCGGTAGGCTT 59.110 61.111 13.24 0.00 42.94 4.35
172 173 1.518572 CTGTACGGCGGTAGGCTTG 60.519 63.158 13.24 0.00 42.94 4.01
173 174 2.202837 GTACGGCGGTAGGCTTGG 60.203 66.667 13.24 0.00 42.94 3.61
174 175 3.463585 TACGGCGGTAGGCTTGGG 61.464 66.667 13.24 0.00 42.94 4.12
184 185 4.587056 GGCTTGGGGGCTATTCTG 57.413 61.111 0.00 0.00 37.53 3.02
185 186 1.922821 GGCTTGGGGGCTATTCTGA 59.077 57.895 0.00 0.00 37.53 3.27
186 187 0.480252 GGCTTGGGGGCTATTCTGAT 59.520 55.000 0.00 0.00 37.53 2.90
187 188 1.613836 GCTTGGGGGCTATTCTGATG 58.386 55.000 0.00 0.00 0.00 3.07
188 189 1.143684 GCTTGGGGGCTATTCTGATGA 59.856 52.381 0.00 0.00 0.00 2.92
189 190 2.224967 GCTTGGGGGCTATTCTGATGAT 60.225 50.000 0.00 0.00 0.00 2.45
190 191 3.418995 CTTGGGGGCTATTCTGATGATG 58.581 50.000 0.00 0.00 0.00 3.07
191 192 2.705148 TGGGGGCTATTCTGATGATGA 58.295 47.619 0.00 0.00 0.00 2.92
192 193 2.641321 TGGGGGCTATTCTGATGATGAG 59.359 50.000 0.00 0.00 0.00 2.90
193 194 2.617532 GGGGGCTATTCTGATGATGAGC 60.618 54.545 0.00 0.00 32.61 4.26
194 195 2.617532 GGGGCTATTCTGATGATGAGCC 60.618 54.545 2.02 2.02 43.87 4.70
195 196 2.344950 GGCTATTCTGATGATGAGCCG 58.655 52.381 0.00 0.00 39.24 5.52
196 197 2.344950 GCTATTCTGATGATGAGCCGG 58.655 52.381 0.00 0.00 0.00 6.13
197 198 2.344950 CTATTCTGATGATGAGCCGGC 58.655 52.381 21.89 21.89 0.00 6.13
198 199 0.250640 ATTCTGATGATGAGCCGGCC 60.251 55.000 26.15 15.80 0.00 6.13
199 200 2.281345 CTGATGATGAGCCGGCCC 60.281 66.667 26.15 13.59 0.00 5.80
200 201 3.839353 CTGATGATGAGCCGGCCCC 62.839 68.421 26.15 16.67 0.00 5.80
201 202 4.996434 GATGATGAGCCGGCCCCG 62.996 72.222 26.15 0.00 39.44 5.73
220 221 3.749064 TCGACCACGAGCTGCTCC 61.749 66.667 22.97 8.29 43.81 4.70
222 223 4.057428 GACCACGAGCTGCTCCGT 62.057 66.667 22.97 19.73 39.88 4.69
223 224 3.973267 GACCACGAGCTGCTCCGTC 62.973 68.421 22.97 19.96 36.83 4.79
227 228 4.838486 CGAGCTGCTCCGTCGGAC 62.838 72.222 22.97 8.33 0.00 4.79
228 229 4.500116 GAGCTGCTCCGTCGGACC 62.500 72.222 18.80 4.48 0.00 4.46
231 232 4.436998 CTGCTCCGTCGGACCACC 62.437 72.222 10.71 0.00 0.00 4.61
233 234 3.771160 GCTCCGTCGGACCACCAT 61.771 66.667 10.71 0.00 35.59 3.55
234 235 2.494918 CTCCGTCGGACCACCATC 59.505 66.667 10.71 0.00 35.59 3.51
235 236 2.036731 TCCGTCGGACCACCATCT 59.963 61.111 10.71 0.00 35.59 2.90
236 237 0.750546 CTCCGTCGGACCACCATCTA 60.751 60.000 10.71 0.00 35.59 1.98
237 238 1.033746 TCCGTCGGACCACCATCTAC 61.034 60.000 10.71 0.00 35.59 2.59
238 239 1.317431 CCGTCGGACCACCATCTACA 61.317 60.000 4.91 0.00 35.59 2.74
239 240 0.744874 CGTCGGACCACCATCTACAT 59.255 55.000 1.91 0.00 35.59 2.29
240 241 1.536072 CGTCGGACCACCATCTACATG 60.536 57.143 1.91 0.00 35.59 3.21
248 249 2.711711 CCATCTACATGGCAGGCAC 58.288 57.895 0.00 0.00 43.55 5.01
249 250 0.182061 CCATCTACATGGCAGGCACT 59.818 55.000 0.00 0.00 43.55 4.40
265 266 4.749310 CTGCGCCGGCTCTTGACT 62.749 66.667 26.68 0.00 40.82 3.41
266 267 4.742201 TGCGCCGGCTCTTGACTC 62.742 66.667 26.68 3.54 40.82 3.36
267 268 4.443266 GCGCCGGCTCTTGACTCT 62.443 66.667 26.68 0.00 35.83 3.24
268 269 3.064987 GCGCCGGCTCTTGACTCTA 62.065 63.158 26.68 0.00 35.83 2.43
269 270 1.226717 CGCCGGCTCTTGACTCTAC 60.227 63.158 26.68 0.00 0.00 2.59
270 271 1.142097 GCCGGCTCTTGACTCTACC 59.858 63.158 22.15 0.00 0.00 3.18
271 272 1.433879 CCGGCTCTTGACTCTACCG 59.566 63.158 0.00 0.00 40.30 4.02
272 273 1.226717 CGGCTCTTGACTCTACCGC 60.227 63.158 0.00 0.00 33.46 5.68
273 274 1.890894 GGCTCTTGACTCTACCGCA 59.109 57.895 0.00 0.00 0.00 5.69
274 275 0.179124 GGCTCTTGACTCTACCGCAG 60.179 60.000 0.00 0.00 0.00 5.18
275 276 0.528470 GCTCTTGACTCTACCGCAGT 59.472 55.000 0.00 0.00 0.00 4.40
276 277 1.743958 GCTCTTGACTCTACCGCAGTA 59.256 52.381 0.00 0.00 0.00 2.74
277 278 2.223386 GCTCTTGACTCTACCGCAGTAG 60.223 54.545 0.26 0.26 46.34 2.57
278 279 2.356382 CTCTTGACTCTACCGCAGTAGG 59.644 54.545 7.26 1.37 45.24 3.18
279 280 0.815734 TTGACTCTACCGCAGTAGGC 59.184 55.000 7.26 0.00 45.24 3.93
288 289 4.175337 GCAGTAGGCGCCATGGGA 62.175 66.667 31.54 4.91 0.00 4.37
289 290 2.109799 CAGTAGGCGCCATGGGAG 59.890 66.667 31.54 9.32 0.00 4.30
290 291 3.164269 AGTAGGCGCCATGGGAGG 61.164 66.667 31.54 0.00 0.00 4.30
291 292 3.161450 GTAGGCGCCATGGGAGGA 61.161 66.667 31.54 0.00 0.00 3.71
292 293 2.366301 TAGGCGCCATGGGAGGAA 60.366 61.111 31.54 0.00 0.00 3.36
293 294 2.742116 TAGGCGCCATGGGAGGAAC 61.742 63.158 31.54 0.00 0.00 3.62
295 296 2.825836 GCGCCATGGGAGGAACTG 60.826 66.667 15.13 0.00 41.55 3.16
296 297 2.124570 CGCCATGGGAGGAACTGG 60.125 66.667 15.13 0.00 41.55 4.00
297 298 2.440980 GCCATGGGAGGAACTGGC 60.441 66.667 15.13 0.00 46.54 4.85
298 299 3.089838 CCATGGGAGGAACTGGCA 58.910 61.111 2.85 0.00 41.55 4.92
299 300 1.379044 CCATGGGAGGAACTGGCAC 60.379 63.158 2.85 0.00 41.55 5.01
300 301 1.687612 CATGGGAGGAACTGGCACT 59.312 57.895 0.00 0.00 41.55 4.40
301 302 0.038744 CATGGGAGGAACTGGCACTT 59.961 55.000 0.00 0.00 41.55 3.16
302 303 0.329596 ATGGGAGGAACTGGCACTTC 59.670 55.000 0.00 0.00 41.55 3.01
303 304 1.376037 GGGAGGAACTGGCACTTCG 60.376 63.158 1.60 0.00 41.55 3.79
304 305 1.371558 GGAGGAACTGGCACTTCGT 59.628 57.895 2.42 2.42 41.55 3.85
305 306 0.670854 GGAGGAACTGGCACTTCGTC 60.671 60.000 16.34 16.34 41.55 4.20
306 307 0.033504 GAGGAACTGGCACTTCGTCA 59.966 55.000 18.44 0.00 41.55 4.35
307 308 0.468226 AGGAACTGGCACTTCGTCAA 59.532 50.000 1.60 0.00 37.18 3.18
308 309 1.072331 AGGAACTGGCACTTCGTCAAT 59.928 47.619 1.60 0.00 37.18 2.57
309 310 2.301870 AGGAACTGGCACTTCGTCAATA 59.698 45.455 1.60 0.00 37.18 1.90
310 311 2.673368 GGAACTGGCACTTCGTCAATAG 59.327 50.000 1.60 0.00 0.00 1.73
311 312 3.585862 GAACTGGCACTTCGTCAATAGA 58.414 45.455 0.00 0.00 0.00 1.98
312 313 3.895232 ACTGGCACTTCGTCAATAGAT 57.105 42.857 0.00 0.00 0.00 1.98
313 314 3.786635 ACTGGCACTTCGTCAATAGATC 58.213 45.455 0.00 0.00 0.00 2.75
314 315 3.126831 CTGGCACTTCGTCAATAGATCC 58.873 50.000 0.00 0.00 0.00 3.36
315 316 2.499693 TGGCACTTCGTCAATAGATCCA 59.500 45.455 0.00 0.00 0.00 3.41
316 317 3.055458 TGGCACTTCGTCAATAGATCCAA 60.055 43.478 0.00 0.00 0.00 3.53
317 318 3.938963 GGCACTTCGTCAATAGATCCAAA 59.061 43.478 0.00 0.00 0.00 3.28
318 319 4.201822 GGCACTTCGTCAATAGATCCAAAC 60.202 45.833 0.00 0.00 0.00 2.93
319 320 4.492570 GCACTTCGTCAATAGATCCAAACG 60.493 45.833 0.00 0.00 0.00 3.60
320 321 3.617263 ACTTCGTCAATAGATCCAAACGC 59.383 43.478 0.00 0.00 0.00 4.84
321 322 2.190161 TCGTCAATAGATCCAAACGCG 58.810 47.619 3.53 3.53 0.00 6.01
322 323 1.924524 CGTCAATAGATCCAAACGCGT 59.075 47.619 5.58 5.58 0.00 6.01
323 324 2.347452 CGTCAATAGATCCAAACGCGTT 59.653 45.455 20.79 20.79 0.00 4.84
324 325 3.181524 CGTCAATAGATCCAAACGCGTTT 60.182 43.478 30.36 30.36 0.00 3.60
325 326 4.088648 GTCAATAGATCCAAACGCGTTTG 58.911 43.478 42.94 42.94 46.93 2.93
326 327 2.825086 ATAGATCCAAACGCGTTTGC 57.175 45.000 43.95 33.90 46.25 3.68
327 328 0.800012 TAGATCCAAACGCGTTTGCC 59.200 50.000 43.95 34.76 46.25 4.52
328 329 1.443702 GATCCAAACGCGTTTGCCC 60.444 57.895 43.95 32.76 46.25 5.36
329 330 3.262142 ATCCAAACGCGTTTGCCCG 62.262 57.895 43.95 33.97 46.25 6.13
330 331 4.992294 CCAAACGCGTTTGCCCGG 62.992 66.667 43.95 32.50 46.25 5.73
331 332 4.258932 CAAACGCGTTTGCCCGGT 62.259 61.111 41.32 17.27 42.66 5.28
332 333 3.956317 AAACGCGTTTGCCCGGTC 61.956 61.111 34.36 0.00 38.08 4.79
335 336 4.383602 CGCGTTTGCCCGGTCAAG 62.384 66.667 0.00 0.00 38.08 3.02
336 337 4.700365 GCGTTTGCCCGGTCAAGC 62.700 66.667 1.54 1.54 33.98 4.01
337 338 4.038080 CGTTTGCCCGGTCAAGCC 62.038 66.667 6.49 0.00 0.00 4.35
353 354 2.358737 CCGCCGGCTCAAGTTCTT 60.359 61.111 26.68 0.00 0.00 2.52
354 355 1.966451 CCGCCGGCTCAAGTTCTTT 60.966 57.895 26.68 0.00 0.00 2.52
355 356 1.497722 CGCCGGCTCAAGTTCTTTC 59.502 57.895 26.68 0.00 0.00 2.62
356 357 1.497722 GCCGGCTCAAGTTCTTTCG 59.502 57.895 22.15 0.00 0.00 3.46
357 358 1.912371 GCCGGCTCAAGTTCTTTCGG 61.912 60.000 22.15 0.00 39.07 4.30
358 359 0.320421 CCGGCTCAAGTTCTTTCGGA 60.320 55.000 0.00 0.00 38.42 4.55
359 360 1.071605 CGGCTCAAGTTCTTTCGGAG 58.928 55.000 0.00 0.00 0.00 4.63
361 362 1.802069 GCTCAAGTTCTTTCGGAGCT 58.198 50.000 12.80 0.00 45.61 4.09
362 363 2.960819 GCTCAAGTTCTTTCGGAGCTA 58.039 47.619 12.80 0.00 45.61 3.32
363 364 2.926838 GCTCAAGTTCTTTCGGAGCTAG 59.073 50.000 12.80 0.00 45.61 3.42
364 365 3.615351 GCTCAAGTTCTTTCGGAGCTAGT 60.615 47.826 12.80 0.00 45.61 2.57
365 366 4.170256 CTCAAGTTCTTTCGGAGCTAGTC 58.830 47.826 0.00 0.00 34.39 2.59
366 367 2.917971 CAAGTTCTTTCGGAGCTAGTCG 59.082 50.000 0.00 0.00 34.39 4.18
367 368 1.135344 AGTTCTTTCGGAGCTAGTCGC 60.135 52.381 0.00 0.00 33.73 5.19
368 369 0.172803 TTCTTTCGGAGCTAGTCGCC 59.827 55.000 0.00 0.00 40.39 5.54
369 370 0.680280 TCTTTCGGAGCTAGTCGCCT 60.680 55.000 0.00 0.00 40.39 5.52
370 371 0.248702 CTTTCGGAGCTAGTCGCCTC 60.249 60.000 0.00 0.00 40.39 4.70
371 372 1.989966 TTTCGGAGCTAGTCGCCTCG 61.990 60.000 0.00 0.00 40.39 4.63
372 373 3.203412 CGGAGCTAGTCGCCTCGT 61.203 66.667 0.00 0.00 40.39 4.18
373 374 2.762234 CGGAGCTAGTCGCCTCGTT 61.762 63.158 0.00 0.00 40.39 3.85
374 375 1.226717 GGAGCTAGTCGCCTCGTTG 60.227 63.158 0.00 0.00 40.39 4.10
375 376 1.654954 GGAGCTAGTCGCCTCGTTGA 61.655 60.000 0.00 0.00 40.39 3.18
376 377 0.523757 GAGCTAGTCGCCTCGTTGAC 60.524 60.000 0.00 0.00 40.39 3.18
377 378 1.211969 GCTAGTCGCCTCGTTGACA 59.788 57.895 0.00 0.00 37.58 3.58
378 379 0.388134 GCTAGTCGCCTCGTTGACAA 60.388 55.000 0.00 0.00 37.58 3.18
379 380 1.337821 CTAGTCGCCTCGTTGACAAC 58.662 55.000 8.34 8.34 37.58 3.32
390 391 1.583054 GTTGACAACGCTCCTTGAGT 58.417 50.000 1.86 0.00 31.39 3.41
391 392 1.527311 GTTGACAACGCTCCTTGAGTC 59.473 52.381 1.86 0.00 31.39 3.36
392 393 0.318699 TGACAACGCTCCTTGAGTCG 60.319 55.000 6.45 6.45 36.12 4.18
393 394 1.618640 GACAACGCTCCTTGAGTCGC 61.619 60.000 7.50 0.00 34.46 5.19
394 395 2.048127 AACGCTCCTTGAGTCGCC 60.048 61.111 7.50 0.00 34.46 5.54
395 396 3.916392 AACGCTCCTTGAGTCGCCG 62.916 63.158 7.50 0.00 34.46 6.46
397 398 4.070552 GCTCCTTGAGTCGCCGGT 62.071 66.667 1.90 0.00 31.39 5.28
398 399 2.707849 GCTCCTTGAGTCGCCGGTA 61.708 63.158 1.90 0.00 31.39 4.02
399 400 1.888018 CTCCTTGAGTCGCCGGTAA 59.112 57.895 1.90 0.00 0.00 2.85
400 401 0.458025 CTCCTTGAGTCGCCGGTAAC 60.458 60.000 1.90 1.09 0.00 2.50
401 402 1.180456 TCCTTGAGTCGCCGGTAACA 61.180 55.000 1.90 0.00 0.00 2.41
402 403 0.736325 CCTTGAGTCGCCGGTAACAG 60.736 60.000 1.90 0.00 0.00 3.16
403 404 1.352156 CTTGAGTCGCCGGTAACAGC 61.352 60.000 1.90 0.00 36.33 4.40
411 412 4.180496 CGGTAACAGCGGAGAACC 57.820 61.111 0.00 0.00 35.16 3.62
412 413 1.290955 CGGTAACAGCGGAGAACCA 59.709 57.895 0.00 0.00 35.16 3.67
413 414 0.736325 CGGTAACAGCGGAGAACCAG 60.736 60.000 0.00 0.00 35.16 4.00
414 415 0.606604 GGTAACAGCGGAGAACCAGA 59.393 55.000 0.00 0.00 35.59 3.86
415 416 1.207329 GGTAACAGCGGAGAACCAGAT 59.793 52.381 0.00 0.00 35.59 2.90
416 417 2.271800 GTAACAGCGGAGAACCAGATG 58.728 52.381 0.00 0.00 35.59 2.90
417 418 0.036010 AACAGCGGAGAACCAGATGG 60.036 55.000 0.00 0.00 42.17 3.51
418 419 0.904865 ACAGCGGAGAACCAGATGGA 60.905 55.000 5.72 0.00 38.94 3.41
419 420 0.179089 CAGCGGAGAACCAGATGGAG 60.179 60.000 5.72 0.00 38.94 3.86
420 421 1.522580 GCGGAGAACCAGATGGAGC 60.523 63.158 5.72 0.00 38.94 4.70
421 422 1.227089 CGGAGAACCAGATGGAGCG 60.227 63.158 5.72 0.00 38.94 5.03
422 423 1.522580 GGAGAACCAGATGGAGCGC 60.523 63.158 5.72 0.00 38.94 5.92
423 424 1.219124 GAGAACCAGATGGAGCGCA 59.781 57.895 11.47 0.00 38.94 6.09
424 425 0.391661 GAGAACCAGATGGAGCGCAA 60.392 55.000 11.47 0.00 38.94 4.85
425 426 0.254178 AGAACCAGATGGAGCGCAAT 59.746 50.000 11.47 0.00 38.94 3.56
426 427 0.379669 GAACCAGATGGAGCGCAATG 59.620 55.000 11.47 0.00 38.94 2.82
427 428 1.660560 AACCAGATGGAGCGCAATGC 61.661 55.000 11.47 0.00 40.83 3.56
441 442 3.528009 GCAATGCGGAGATAGCTAAAC 57.472 47.619 0.00 0.00 35.28 2.01
442 443 3.134458 GCAATGCGGAGATAGCTAAACT 58.866 45.455 0.00 0.00 35.28 2.66
443 444 3.561725 GCAATGCGGAGATAGCTAAACTT 59.438 43.478 0.00 0.00 35.28 2.66
444 445 4.319118 GCAATGCGGAGATAGCTAAACTTC 60.319 45.833 0.00 0.00 35.28 3.01
445 446 3.079960 TGCGGAGATAGCTAAACTTCG 57.920 47.619 20.51 20.51 35.97 3.79
447 448 2.044860 CGGAGATAGCTAAACTTCGCG 58.955 52.381 15.54 0.00 0.00 5.87
448 449 2.286831 CGGAGATAGCTAAACTTCGCGA 60.287 50.000 3.71 3.71 0.00 5.87
449 450 3.301706 GGAGATAGCTAAACTTCGCGAG 58.698 50.000 9.59 6.46 0.00 5.03
450 451 2.722116 GAGATAGCTAAACTTCGCGAGC 59.278 50.000 9.59 8.45 35.07 5.03
451 452 2.099263 AGATAGCTAAACTTCGCGAGCA 59.901 45.455 16.61 0.00 37.40 4.26
452 453 1.909376 TAGCTAAACTTCGCGAGCAG 58.091 50.000 16.61 11.87 37.40 4.24
453 454 0.243907 AGCTAAACTTCGCGAGCAGA 59.756 50.000 14.48 0.00 37.40 4.26
454 455 1.134965 AGCTAAACTTCGCGAGCAGAT 60.135 47.619 14.48 0.00 37.40 2.90
455 456 1.005557 GCTAAACTTCGCGAGCAGATG 60.006 52.381 14.48 4.57 34.96 2.90
456 457 1.590238 CTAAACTTCGCGAGCAGATGG 59.410 52.381 14.48 1.91 0.00 3.51
457 458 1.639298 AAACTTCGCGAGCAGATGGC 61.639 55.000 14.48 0.00 45.30 4.40
468 469 1.307097 GCAGATGGCTAAAGCTCAGG 58.693 55.000 1.39 0.00 41.70 3.86
469 470 1.134280 GCAGATGGCTAAAGCTCAGGA 60.134 52.381 1.39 0.00 41.70 3.86
470 471 2.681976 GCAGATGGCTAAAGCTCAGGAA 60.682 50.000 1.39 0.00 41.70 3.36
471 472 3.204526 CAGATGGCTAAAGCTCAGGAAG 58.795 50.000 1.39 0.00 41.70 3.46
472 473 3.110705 AGATGGCTAAAGCTCAGGAAGA 58.889 45.455 1.39 0.00 41.70 2.87
473 474 3.715834 AGATGGCTAAAGCTCAGGAAGAT 59.284 43.478 1.39 0.00 41.70 2.40
474 475 4.904251 AGATGGCTAAAGCTCAGGAAGATA 59.096 41.667 1.39 0.00 41.70 1.98
475 476 5.547276 AGATGGCTAAAGCTCAGGAAGATAT 59.453 40.000 1.39 0.00 41.70 1.63
476 477 5.220710 TGGCTAAAGCTCAGGAAGATATC 57.779 43.478 1.39 0.00 41.70 1.63
477 478 4.655649 TGGCTAAAGCTCAGGAAGATATCA 59.344 41.667 5.32 0.00 41.70 2.15
478 479 5.130975 TGGCTAAAGCTCAGGAAGATATCAA 59.869 40.000 5.32 0.00 41.70 2.57
479 480 5.468409 GGCTAAAGCTCAGGAAGATATCAAC 59.532 44.000 5.32 0.00 41.70 3.18
480 481 5.176590 GCTAAAGCTCAGGAAGATATCAACG 59.823 44.000 5.32 0.00 38.21 4.10
481 482 3.104843 AGCTCAGGAAGATATCAACGC 57.895 47.619 5.32 0.00 0.00 4.84
482 483 2.697751 AGCTCAGGAAGATATCAACGCT 59.302 45.455 5.32 0.30 0.00 5.07
483 484 2.799412 GCTCAGGAAGATATCAACGCTG 59.201 50.000 5.32 7.96 0.00 5.18
484 485 3.491619 GCTCAGGAAGATATCAACGCTGA 60.492 47.826 5.32 11.05 35.56 4.26
485 486 4.297510 CTCAGGAAGATATCAACGCTGAG 58.702 47.826 19.49 19.49 34.23 3.35
486 487 3.068732 TCAGGAAGATATCAACGCTGAGG 59.931 47.826 5.32 0.00 34.23 3.86
487 488 2.366916 AGGAAGATATCAACGCTGAGGG 59.633 50.000 5.32 0.00 34.23 4.30
488 489 2.365617 GGAAGATATCAACGCTGAGGGA 59.634 50.000 2.65 0.00 34.23 4.20
489 490 3.553922 GGAAGATATCAACGCTGAGGGAG 60.554 52.174 2.65 0.00 34.23 4.30
490 491 2.672098 AGATATCAACGCTGAGGGAGT 58.328 47.619 2.65 0.00 34.23 3.85
491 492 3.034635 AGATATCAACGCTGAGGGAGTT 58.965 45.455 2.65 0.00 38.44 3.01
492 493 4.215908 AGATATCAACGCTGAGGGAGTTA 58.784 43.478 2.65 0.00 36.24 2.24
493 494 4.649674 AGATATCAACGCTGAGGGAGTTAA 59.350 41.667 2.65 0.00 36.24 2.01
494 495 3.914426 ATCAACGCTGAGGGAGTTAAT 57.086 42.857 2.65 0.00 36.24 1.40
495 496 2.972625 TCAACGCTGAGGGAGTTAATG 58.027 47.619 2.65 0.00 36.24 1.90
496 497 2.565391 TCAACGCTGAGGGAGTTAATGA 59.435 45.455 2.65 0.00 36.24 2.57
497 498 3.197766 TCAACGCTGAGGGAGTTAATGAT 59.802 43.478 2.65 0.00 36.24 2.45
498 499 3.460857 ACGCTGAGGGAGTTAATGATC 57.539 47.619 2.65 0.00 0.00 2.92
499 500 2.223829 ACGCTGAGGGAGTTAATGATCG 60.224 50.000 2.65 0.00 0.00 3.69
500 501 2.034685 CGCTGAGGGAGTTAATGATCGA 59.965 50.000 0.00 0.00 0.00 3.59
501 502 3.305676 CGCTGAGGGAGTTAATGATCGAT 60.306 47.826 0.00 0.00 0.00 3.59
502 503 4.241681 GCTGAGGGAGTTAATGATCGATC 58.758 47.826 18.72 18.72 0.00 3.69
503 504 4.262207 GCTGAGGGAGTTAATGATCGATCA 60.262 45.833 29.09 29.09 41.70 2.92
505 506 6.030548 TGAGGGAGTTAATGATCGATCATC 57.969 41.667 34.66 24.38 46.22 2.92
506 507 5.539955 TGAGGGAGTTAATGATCGATCATCA 59.460 40.000 34.66 22.76 46.22 3.07
507 508 6.041979 TGAGGGAGTTAATGATCGATCATCAA 59.958 38.462 34.66 26.80 46.22 2.57
508 509 6.226787 AGGGAGTTAATGATCGATCATCAAC 58.773 40.000 33.46 33.46 46.22 3.18
514 515 8.586570 GTTAATGATCGATCATCAACTCTTCT 57.413 34.615 33.28 21.46 46.22 2.85
515 516 8.486383 GTTAATGATCGATCATCAACTCTTCTG 58.514 37.037 33.28 0.00 46.22 3.02
516 517 5.588958 TGATCGATCATCAACTCTTCTGT 57.411 39.130 23.99 0.00 38.68 3.41
517 518 5.586339 TGATCGATCATCAACTCTTCTGTC 58.414 41.667 23.99 0.00 38.68 3.51
518 519 4.377839 TCGATCATCAACTCTTCTGTCC 57.622 45.455 0.00 0.00 0.00 4.02
519 520 3.763897 TCGATCATCAACTCTTCTGTCCA 59.236 43.478 0.00 0.00 0.00 4.02
520 521 4.403752 TCGATCATCAACTCTTCTGTCCAT 59.596 41.667 0.00 0.00 0.00 3.41
521 522 4.507021 CGATCATCAACTCTTCTGTCCATG 59.493 45.833 0.00 0.00 0.00 3.66
522 523 5.668471 GATCATCAACTCTTCTGTCCATGA 58.332 41.667 0.00 0.00 0.00 3.07
523 524 5.688814 TCATCAACTCTTCTGTCCATGAT 57.311 39.130 0.00 0.00 0.00 2.45
524 525 5.668471 TCATCAACTCTTCTGTCCATGATC 58.332 41.667 0.00 0.00 0.00 2.92
525 526 4.115401 TCAACTCTTCTGTCCATGATCG 57.885 45.455 0.00 0.00 0.00 3.69
526 527 3.763897 TCAACTCTTCTGTCCATGATCGA 59.236 43.478 0.00 0.00 0.00 3.59
527 528 4.403752 TCAACTCTTCTGTCCATGATCGAT 59.596 41.667 0.00 0.00 0.00 3.59
528 529 4.582701 ACTCTTCTGTCCATGATCGATC 57.417 45.455 18.72 18.72 0.00 3.69
529 530 3.956848 ACTCTTCTGTCCATGATCGATCA 59.043 43.478 29.09 29.09 41.70 2.92
531 532 5.131594 TCTTCTGTCCATGATCGATCATC 57.868 43.478 32.92 23.42 45.23 2.92
532 533 3.565905 TCTGTCCATGATCGATCATCG 57.434 47.619 32.92 27.59 45.23 3.84
549 550 4.766970 GATGAGCTCGATGGGTGG 57.233 61.111 9.64 0.00 0.00 4.61
550 551 1.596477 GATGAGCTCGATGGGTGGC 60.596 63.158 9.64 0.00 0.00 5.01
551 552 2.037620 GATGAGCTCGATGGGTGGCT 62.038 60.000 9.64 0.00 37.77 4.75
555 556 2.124983 CTCGATGGGTGGCTGTGG 60.125 66.667 0.00 0.00 0.00 4.17
569 570 2.602878 GCTGTGGCTGACATCAAATTG 58.397 47.619 0.00 0.00 32.74 2.32
570 571 2.602878 CTGTGGCTGACATCAAATTGC 58.397 47.619 0.00 0.00 32.74 3.56
571 572 1.962100 TGTGGCTGACATCAAATTGCA 59.038 42.857 0.00 0.00 0.00 4.08
572 573 2.029739 TGTGGCTGACATCAAATTGCAG 60.030 45.455 0.00 0.00 0.00 4.41
573 574 2.029649 GTGGCTGACATCAAATTGCAGT 60.030 45.455 0.00 0.00 0.00 4.40
574 575 2.029739 TGGCTGACATCAAATTGCAGTG 60.030 45.455 0.00 0.00 0.00 3.66
590 592 3.323691 TGCAGTGGTTAGCTTCTCTTACA 59.676 43.478 0.00 0.00 0.00 2.41
600 602 4.260170 AGCTTCTCTTACATGGCTTTCAG 58.740 43.478 0.00 0.00 0.00 3.02
611 613 2.143122 TGGCTTTCAGACATGTTCGTC 58.857 47.619 0.00 0.00 36.08 4.20
613 615 2.058798 GCTTTCAGACATGTTCGTCGA 58.941 47.619 0.00 0.00 40.98 4.20
623 625 4.357142 ACATGTTCGTCGACGCTATAATT 58.643 39.130 32.19 11.06 39.60 1.40
662 664 8.103305 TCTTGGCTAAATCTTGTATGAACTCTT 58.897 33.333 0.00 0.00 0.00 2.85
663 665 9.383519 CTTGGCTAAATCTTGTATGAACTCTTA 57.616 33.333 0.00 0.00 0.00 2.10
664 666 8.948631 TGGCTAAATCTTGTATGAACTCTTAG 57.051 34.615 0.00 0.00 0.00 2.18
672 674 3.706594 TGTATGAACTCTTAGGGCCAGAG 59.293 47.826 17.04 17.04 43.16 3.35
703 705 0.894141 TTTGCAGTGGTGTTGCTTGT 59.106 45.000 0.00 0.00 42.02 3.16
704 706 0.173029 TTGCAGTGGTGTTGCTTGTG 59.827 50.000 0.00 0.00 42.02 3.33
705 707 0.679321 TGCAGTGGTGTTGCTTGTGA 60.679 50.000 0.00 0.00 42.02 3.58
706 708 0.670162 GCAGTGGTGTTGCTTGTGAT 59.330 50.000 0.00 0.00 38.51 3.06
707 709 1.067516 GCAGTGGTGTTGCTTGTGATT 59.932 47.619 0.00 0.00 38.51 2.57
708 710 2.293122 GCAGTGGTGTTGCTTGTGATTA 59.707 45.455 0.00 0.00 38.51 1.75
709 711 3.243367 GCAGTGGTGTTGCTTGTGATTAA 60.243 43.478 0.00 0.00 38.51 1.40
710 712 4.736168 GCAGTGGTGTTGCTTGTGATTAAA 60.736 41.667 0.00 0.00 38.51 1.52
711 713 5.531634 CAGTGGTGTTGCTTGTGATTAAAT 58.468 37.500 0.00 0.00 0.00 1.40
712 714 6.676950 CAGTGGTGTTGCTTGTGATTAAATA 58.323 36.000 0.00 0.00 0.00 1.40
713 715 7.144661 CAGTGGTGTTGCTTGTGATTAAATAA 58.855 34.615 0.00 0.00 0.00 1.40
714 716 7.326789 CAGTGGTGTTGCTTGTGATTAAATAAG 59.673 37.037 0.00 0.00 0.00 1.73
760 783 1.358051 ACGAAACCAAACCTCCCCCT 61.358 55.000 0.00 0.00 0.00 4.79
763 786 2.404559 GAAACCAAACCTCCCCCTTTT 58.595 47.619 0.00 0.00 0.00 2.27
764 787 2.097110 AACCAAACCTCCCCCTTTTC 57.903 50.000 0.00 0.00 0.00 2.29
765 788 1.241485 ACCAAACCTCCCCCTTTTCT 58.759 50.000 0.00 0.00 0.00 2.52
766 789 1.147191 ACCAAACCTCCCCCTTTTCTC 59.853 52.381 0.00 0.00 0.00 2.87
767 790 1.550179 CCAAACCTCCCCCTTTTCTCC 60.550 57.143 0.00 0.00 0.00 3.71
768 791 1.146982 CAAACCTCCCCCTTTTCTCCA 59.853 52.381 0.00 0.00 0.00 3.86
1211 1236 2.331805 CCTCCGCTACATCGTCGG 59.668 66.667 0.00 0.00 44.16 4.79
1315 1340 0.457853 TTCCAATCTTCTCGCCGTCG 60.458 55.000 0.00 0.00 0.00 5.12
1365 1390 0.033228 TCTTTTTCCCGTACGGCGAA 59.967 50.000 29.15 26.70 44.77 4.70
1434 1459 2.744709 GCGCCAGTTTCGCCCTTA 60.745 61.111 0.00 0.00 46.18 2.69
1574 1599 3.317150 CTGCGACATTGTACTCAGTGAA 58.683 45.455 0.00 0.00 35.66 3.18
1683 1708 1.252904 GCTGGAGCAGGCATTTTCCA 61.253 55.000 1.16 1.16 41.59 3.53
1709 1734 3.939939 TGCGGTGCTGCTGGAGAA 61.940 61.111 0.00 0.00 35.36 2.87
1774 1799 2.426752 CGAGCGTTGGTTTTGGCG 60.427 61.111 0.00 0.00 0.00 5.69
1839 1864 0.461163 CGCAACCGTGGATGGTGATA 60.461 55.000 0.00 0.00 42.89 2.15
1951 1976 6.861065 TTCAGTACAAGGTTCTAGCAAAAG 57.139 37.500 0.00 0.00 0.00 2.27
1968 1993 0.558712 AAGTTGGGTTGCCAGGGTTA 59.441 50.000 0.00 0.00 0.00 2.85
2230 2255 2.749776 CCATTTTGGTTGGTTCGTTCC 58.250 47.619 0.00 0.00 31.35 3.62
2231 2256 2.101582 CCATTTTGGTTGGTTCGTTCCA 59.898 45.455 0.00 0.00 35.49 3.53
2360 2385 1.473677 GTATTGTGGCTGCAGCAATGA 59.526 47.619 37.63 20.84 44.36 2.57
2643 2668 6.505044 TCATCCATTTTGATTGACACTCAG 57.495 37.500 0.00 0.00 0.00 3.35
2688 2713 9.643693 AAATATCGATTCTTGAAGTTGCATTTT 57.356 25.926 1.71 0.00 0.00 1.82
2811 2836 2.620585 GGCATTTGCAGAGGATAACTCC 59.379 50.000 4.74 0.00 41.68 3.85
3328 3353 8.689251 CAAGAAGTCATATCTTGTTTACGAGA 57.311 34.615 7.86 2.43 45.53 4.04
3462 3487 6.718454 AGGATGAGAACTTCATGACATTTGTT 59.282 34.615 0.00 0.00 46.51 2.83
3480 3505 1.754226 GTTTGTGGAAAAGCTGGGACA 59.246 47.619 0.00 0.00 0.00 4.02
3792 3942 8.495361 ACTAGTAATATATACGCTCTCAGGTG 57.505 38.462 0.00 0.00 0.00 4.00
3857 4007 2.932614 CACTTCTTGGGAGTAAGATGCG 59.067 50.000 0.00 0.00 36.63 4.73
4013 4220 5.583932 AGGATTGCAATAGACCTCCTTTTT 58.416 37.500 12.97 0.00 28.77 1.94
4085 4293 3.176708 CTGAGAAAATTTGCAGCCATCG 58.823 45.455 0.00 0.00 0.00 3.84
4135 4343 9.698309 ACATGCTTATATTCAGATACTGTGTAC 57.302 33.333 0.00 0.00 32.61 2.90
4321 4824 8.534496 ACCGTGTAATTACTACCTTTTCTGTAT 58.466 33.333 16.33 0.00 0.00 2.29
4583 5087 2.061028 GCATTCACTTTGGCCTTTTCG 58.939 47.619 3.32 0.00 0.00 3.46
4584 5088 2.288152 GCATTCACTTTGGCCTTTTCGA 60.288 45.455 3.32 0.00 0.00 3.71
4590 5094 2.035832 ACTTTGGCCTTTTCGATTGTGG 59.964 45.455 3.32 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.684881 AGGATGATGCCGCAAAGTAAAG 59.315 45.455 0.00 0.00 0.00 1.85
1 2 2.722094 AGGATGATGCCGCAAAGTAAA 58.278 42.857 0.00 0.00 0.00 2.01
2 3 2.418368 AGGATGATGCCGCAAAGTAA 57.582 45.000 0.00 0.00 0.00 2.24
3 4 2.418368 AAGGATGATGCCGCAAAGTA 57.582 45.000 0.00 0.00 0.00 2.24
4 5 1.474077 GAAAGGATGATGCCGCAAAGT 59.526 47.619 0.00 0.00 0.00 2.66
5 6 1.202336 GGAAAGGATGATGCCGCAAAG 60.202 52.381 0.00 0.00 0.00 2.77
6 7 0.817013 GGAAAGGATGATGCCGCAAA 59.183 50.000 0.00 0.00 0.00 3.68
7 8 0.034186 AGGAAAGGATGATGCCGCAA 60.034 50.000 0.00 0.00 0.00 4.85
8 9 0.464373 GAGGAAAGGATGATGCCGCA 60.464 55.000 0.00 0.00 0.00 5.69
9 10 0.179034 AGAGGAAAGGATGATGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
10 11 2.216898 GAAGAGGAAAGGATGATGCCG 58.783 52.381 0.00 0.00 0.00 5.69
11 12 3.287867 TGAAGAGGAAAGGATGATGCC 57.712 47.619 0.00 0.00 0.00 4.40
12 13 4.897025 CTTGAAGAGGAAAGGATGATGC 57.103 45.455 0.00 0.00 0.00 3.91
24 25 3.243401 CGTTGGTTTTTCCCTTGAAGAGG 60.243 47.826 0.00 0.00 45.86 3.69
25 26 3.795488 GCGTTGGTTTTTCCCTTGAAGAG 60.795 47.826 0.00 0.00 34.77 2.85
26 27 2.100087 GCGTTGGTTTTTCCCTTGAAGA 59.900 45.455 0.00 0.00 34.77 2.87
27 28 2.159170 TGCGTTGGTTTTTCCCTTGAAG 60.159 45.455 0.00 0.00 34.77 3.02
28 29 1.825474 TGCGTTGGTTTTTCCCTTGAA 59.175 42.857 0.00 0.00 34.77 2.69
29 30 1.475403 TGCGTTGGTTTTTCCCTTGA 58.525 45.000 0.00 0.00 34.77 3.02
30 31 2.200899 CTTGCGTTGGTTTTTCCCTTG 58.799 47.619 0.00 0.00 34.77 3.61
31 32 1.472552 GCTTGCGTTGGTTTTTCCCTT 60.473 47.619 0.00 0.00 34.77 3.95
32 33 0.104120 GCTTGCGTTGGTTTTTCCCT 59.896 50.000 0.00 0.00 34.77 4.20
33 34 0.104120 AGCTTGCGTTGGTTTTTCCC 59.896 50.000 0.00 0.00 34.77 3.97
34 35 1.202359 TGAGCTTGCGTTGGTTTTTCC 60.202 47.619 0.00 0.00 0.00 3.13
35 36 2.202295 TGAGCTTGCGTTGGTTTTTC 57.798 45.000 0.00 0.00 0.00 2.29
36 37 2.165437 TCTTGAGCTTGCGTTGGTTTTT 59.835 40.909 0.00 0.00 0.00 1.94
37 38 1.748493 TCTTGAGCTTGCGTTGGTTTT 59.252 42.857 0.00 0.00 0.00 2.43
38 39 1.388547 TCTTGAGCTTGCGTTGGTTT 58.611 45.000 0.00 0.00 0.00 3.27
39 40 1.334869 CTTCTTGAGCTTGCGTTGGTT 59.665 47.619 0.00 0.00 0.00 3.67
40 41 0.947244 CTTCTTGAGCTTGCGTTGGT 59.053 50.000 0.00 0.00 0.00 3.67
41 42 0.947244 ACTTCTTGAGCTTGCGTTGG 59.053 50.000 0.00 0.00 0.00 3.77
42 43 2.412065 GCTACTTCTTGAGCTTGCGTTG 60.412 50.000 0.00 0.00 35.73 4.10
43 44 1.801178 GCTACTTCTTGAGCTTGCGTT 59.199 47.619 0.00 0.00 35.73 4.84
44 45 1.270305 TGCTACTTCTTGAGCTTGCGT 60.270 47.619 0.00 0.00 39.54 5.24
45 46 1.432514 TGCTACTTCTTGAGCTTGCG 58.567 50.000 0.00 0.00 39.54 4.85
46 47 3.688673 AGATTGCTACTTCTTGAGCTTGC 59.311 43.478 0.00 0.00 39.54 4.01
47 48 4.032672 CGAGATTGCTACTTCTTGAGCTTG 59.967 45.833 0.00 0.00 39.54 4.01
48 49 4.180057 CGAGATTGCTACTTCTTGAGCTT 58.820 43.478 0.00 0.00 39.54 3.74
49 50 3.779759 CGAGATTGCTACTTCTTGAGCT 58.220 45.455 0.00 0.00 39.54 4.09
50 51 2.283884 GCGAGATTGCTACTTCTTGAGC 59.716 50.000 0.00 0.00 39.25 4.26
51 52 3.515630 TGCGAGATTGCTACTTCTTGAG 58.484 45.455 0.00 0.00 35.36 3.02
52 53 3.193479 TCTGCGAGATTGCTACTTCTTGA 59.807 43.478 0.00 0.00 35.36 3.02
53 54 3.305629 GTCTGCGAGATTGCTACTTCTTG 59.694 47.826 0.00 0.00 35.36 3.02
54 55 3.056536 TGTCTGCGAGATTGCTACTTCTT 60.057 43.478 0.00 0.00 35.36 2.52
55 56 2.493675 TGTCTGCGAGATTGCTACTTCT 59.506 45.455 0.00 0.00 35.36 2.85
56 57 2.881074 TGTCTGCGAGATTGCTACTTC 58.119 47.619 0.00 0.00 35.36 3.01
57 58 2.996621 GTTGTCTGCGAGATTGCTACTT 59.003 45.455 0.00 0.00 35.36 2.24
58 59 2.232452 AGTTGTCTGCGAGATTGCTACT 59.768 45.455 0.00 0.00 35.36 2.57
59 60 2.600867 GAGTTGTCTGCGAGATTGCTAC 59.399 50.000 0.00 0.00 35.36 3.58
60 61 2.417379 GGAGTTGTCTGCGAGATTGCTA 60.417 50.000 0.00 0.00 35.36 3.49
61 62 1.674221 GGAGTTGTCTGCGAGATTGCT 60.674 52.381 0.00 0.00 35.36 3.91
62 63 0.723981 GGAGTTGTCTGCGAGATTGC 59.276 55.000 0.00 0.00 0.00 3.56
72 73 2.201022 ACCAGACGCGGAGTTGTCT 61.201 57.895 12.47 0.00 43.83 3.41
73 74 2.022129 CACCAGACGCGGAGTTGTC 61.022 63.158 12.47 0.00 35.76 3.18
74 75 2.029073 CACCAGACGCGGAGTTGT 59.971 61.111 12.47 0.00 0.00 3.32
75 76 2.738521 CCACCAGACGCGGAGTTG 60.739 66.667 12.47 2.54 0.00 3.16
76 77 4.003788 CCCACCAGACGCGGAGTT 62.004 66.667 12.47 0.00 0.00 3.01
77 78 3.873679 TACCCACCAGACGCGGAGT 62.874 63.158 12.47 0.00 0.00 3.85
78 79 3.066190 TACCCACCAGACGCGGAG 61.066 66.667 12.47 0.00 0.00 4.63
79 80 3.376078 GTACCCACCAGACGCGGA 61.376 66.667 12.47 0.00 0.00 5.54
80 81 3.687102 TGTACCCACCAGACGCGG 61.687 66.667 12.47 0.00 0.00 6.46
81 82 2.431942 GTGTACCCACCAGACGCG 60.432 66.667 3.53 3.53 35.44 6.01
92 93 1.135721 CGTAGTAGGCAAGGGTGTACC 59.864 57.143 0.00 0.00 40.67 3.34
93 94 2.094675 TCGTAGTAGGCAAGGGTGTAC 58.905 52.381 0.00 0.00 0.00 2.90
94 95 2.094675 GTCGTAGTAGGCAAGGGTGTA 58.905 52.381 0.00 0.00 0.00 2.90
95 96 0.893447 GTCGTAGTAGGCAAGGGTGT 59.107 55.000 0.00 0.00 0.00 4.16
96 97 0.179145 CGTCGTAGTAGGCAAGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
97 98 1.318158 CCGTCGTAGTAGGCAAGGGT 61.318 60.000 0.00 0.00 0.00 4.34
98 99 1.436336 CCGTCGTAGTAGGCAAGGG 59.564 63.158 0.00 0.00 0.00 3.95
99 100 1.226888 GCCGTCGTAGTAGGCAAGG 60.227 63.158 0.30 0.00 46.35 3.61
100 101 4.396854 GCCGTCGTAGTAGGCAAG 57.603 61.111 0.30 0.00 46.35 4.01
103 104 2.327244 CTCGCCGTCGTAGTAGGC 59.673 66.667 0.00 0.00 44.50 3.93
104 105 1.086067 TGACTCGCCGTCGTAGTAGG 61.086 60.000 0.00 0.00 45.87 3.18
105 106 0.935898 ATGACTCGCCGTCGTAGTAG 59.064 55.000 0.00 0.00 45.87 2.57
106 107 0.933097 GATGACTCGCCGTCGTAGTA 59.067 55.000 0.00 0.00 45.87 1.82
107 108 1.720301 GATGACTCGCCGTCGTAGT 59.280 57.895 0.00 0.00 45.87 2.73
108 109 1.367782 CGATGACTCGCCGTCGTAG 60.368 63.158 0.00 0.00 45.87 3.51
109 110 2.705220 CGATGACTCGCCGTCGTA 59.295 61.111 0.00 0.00 45.87 3.43
110 111 4.175489 CCGATGACTCGCCGTCGT 62.175 66.667 0.00 6.24 45.87 4.34
111 112 4.175489 ACCGATGACTCGCCGTCG 62.175 66.667 0.00 0.00 45.87 5.12
112 113 2.278013 GACCGATGACTCGCCGTC 60.278 66.667 0.00 0.00 43.66 4.79
113 114 4.175489 CGACCGATGACTCGCCGT 62.175 66.667 0.00 0.00 43.66 5.68
114 115 4.907034 CCGACCGATGACTCGCCG 62.907 72.222 0.00 0.00 43.66 6.46
115 116 4.570663 CCCGACCGATGACTCGCC 62.571 72.222 0.00 0.00 43.66 5.54
116 117 4.570663 CCCCGACCGATGACTCGC 62.571 72.222 0.00 0.00 43.66 5.03
117 118 2.827190 TCCCCGACCGATGACTCG 60.827 66.667 0.00 0.00 44.62 4.18
118 119 2.050350 TGTCCCCGACCGATGACTC 61.050 63.158 10.75 0.00 0.00 3.36
119 120 2.036731 TGTCCCCGACCGATGACT 59.963 61.111 10.75 0.00 0.00 3.41
120 121 2.183555 GTGTCCCCGACCGATGAC 59.816 66.667 0.00 0.00 0.00 3.06
121 122 2.036731 AGTGTCCCCGACCGATGA 59.963 61.111 0.00 0.00 0.00 2.92
122 123 2.184322 CAGTGTCCCCGACCGATG 59.816 66.667 0.00 0.00 0.00 3.84
123 124 2.036731 TCAGTGTCCCCGACCGAT 59.963 61.111 0.00 0.00 0.00 4.18
124 125 2.675423 CTCAGTGTCCCCGACCGA 60.675 66.667 0.00 0.00 0.00 4.69
125 126 2.989824 ACTCAGTGTCCCCGACCG 60.990 66.667 0.00 0.00 0.00 4.79
126 127 2.971452 GACTCAGTGTCCCCGACC 59.029 66.667 0.00 0.00 39.69 4.79
127 128 1.313812 ATCGACTCAGTGTCCCCGAC 61.314 60.000 0.00 0.00 42.49 4.79
128 129 1.001269 ATCGACTCAGTGTCCCCGA 60.001 57.895 0.00 0.00 42.49 5.14
129 130 1.433879 GATCGACTCAGTGTCCCCG 59.566 63.158 0.00 0.00 42.49 5.73
130 131 0.684805 AGGATCGACTCAGTGTCCCC 60.685 60.000 0.00 0.00 42.49 4.81
131 132 0.741915 GAGGATCGACTCAGTGTCCC 59.258 60.000 0.00 0.00 42.49 4.46
132 133 0.741915 GGAGGATCGACTCAGTGTCC 59.258 60.000 5.51 0.00 42.49 4.02
133 134 0.741915 GGGAGGATCGACTCAGTGTC 59.258 60.000 5.51 0.00 39.27 3.67
134 135 1.032657 CGGGAGGATCGACTCAGTGT 61.033 60.000 5.51 0.00 39.27 3.55
135 136 1.730487 CGGGAGGATCGACTCAGTG 59.270 63.158 5.51 0.00 39.27 3.66
136 137 2.122167 GCGGGAGGATCGACTCAGT 61.122 63.158 5.51 0.00 39.27 3.41
137 138 1.826054 AGCGGGAGGATCGACTCAG 60.826 63.158 5.51 0.71 39.27 3.35
138 139 2.121538 CAGCGGGAGGATCGACTCA 61.122 63.158 5.51 0.00 39.27 3.41
139 140 0.818445 TACAGCGGGAGGATCGACTC 60.818 60.000 0.00 0.00 34.37 3.36
140 141 1.102222 GTACAGCGGGAGGATCGACT 61.102 60.000 0.00 0.00 34.37 4.18
141 142 1.359475 GTACAGCGGGAGGATCGAC 59.641 63.158 0.00 0.00 34.37 4.20
142 143 2.184830 CGTACAGCGGGAGGATCGA 61.185 63.158 0.00 0.00 34.37 3.59
143 144 2.331805 CGTACAGCGGGAGGATCG 59.668 66.667 0.00 0.00 34.37 3.69
153 154 3.366739 AAGCCTACCGCCGTACAGC 62.367 63.158 0.00 0.00 38.78 4.40
154 155 1.518572 CAAGCCTACCGCCGTACAG 60.519 63.158 0.00 0.00 38.78 2.74
155 156 2.574929 CAAGCCTACCGCCGTACA 59.425 61.111 0.00 0.00 38.78 2.90
156 157 2.202837 CCAAGCCTACCGCCGTAC 60.203 66.667 0.00 0.00 38.78 3.67
157 158 3.463585 CCCAAGCCTACCGCCGTA 61.464 66.667 0.00 0.00 38.78 4.02
162 163 1.705997 AATAGCCCCCAAGCCTACCG 61.706 60.000 0.00 0.00 0.00 4.02
163 164 0.110678 GAATAGCCCCCAAGCCTACC 59.889 60.000 0.00 0.00 0.00 3.18
164 165 1.141185 AGAATAGCCCCCAAGCCTAC 58.859 55.000 0.00 0.00 0.00 3.18
165 166 1.140312 CAGAATAGCCCCCAAGCCTA 58.860 55.000 0.00 0.00 0.00 3.93
166 167 0.624500 TCAGAATAGCCCCCAAGCCT 60.625 55.000 0.00 0.00 0.00 4.58
167 168 0.480252 ATCAGAATAGCCCCCAAGCC 59.520 55.000 0.00 0.00 0.00 4.35
168 169 1.143684 TCATCAGAATAGCCCCCAAGC 59.856 52.381 0.00 0.00 0.00 4.01
169 170 3.073503 TCATCATCAGAATAGCCCCCAAG 59.926 47.826 0.00 0.00 0.00 3.61
170 171 3.055328 TCATCATCAGAATAGCCCCCAA 58.945 45.455 0.00 0.00 0.00 4.12
171 172 2.641321 CTCATCATCAGAATAGCCCCCA 59.359 50.000 0.00 0.00 0.00 4.96
172 173 2.617532 GCTCATCATCAGAATAGCCCCC 60.618 54.545 0.00 0.00 32.41 5.40
173 174 2.617532 GGCTCATCATCAGAATAGCCCC 60.618 54.545 0.00 0.00 44.17 5.80
174 175 2.709213 GGCTCATCATCAGAATAGCCC 58.291 52.381 0.00 0.00 44.17 5.19
175 176 2.344950 CGGCTCATCATCAGAATAGCC 58.655 52.381 0.00 0.00 45.40 3.93
176 177 2.344950 CCGGCTCATCATCAGAATAGC 58.655 52.381 0.00 0.00 35.80 2.97
177 178 2.344950 GCCGGCTCATCATCAGAATAG 58.655 52.381 22.15 0.00 0.00 1.73
178 179 1.002430 GGCCGGCTCATCATCAGAATA 59.998 52.381 28.56 0.00 0.00 1.75
179 180 0.250640 GGCCGGCTCATCATCAGAAT 60.251 55.000 28.56 0.00 0.00 2.40
180 181 1.146930 GGCCGGCTCATCATCAGAA 59.853 57.895 28.56 0.00 0.00 3.02
181 182 2.811514 GGGCCGGCTCATCATCAGA 61.812 63.158 28.56 0.00 0.00 3.27
182 183 2.281345 GGGCCGGCTCATCATCAG 60.281 66.667 28.56 0.00 0.00 2.90
183 184 3.877450 GGGGCCGGCTCATCATCA 61.877 66.667 31.11 0.00 0.00 3.07
184 185 4.996434 CGGGGCCGGCTCATCATC 62.996 72.222 31.11 9.37 35.56 2.92
199 200 4.778415 CAGCTCGTGGTCGACCGG 62.778 72.222 28.70 22.45 41.35 5.28
201 202 3.973267 GAGCAGCTCGTGGTCGACC 62.973 68.421 28.17 28.17 43.56 4.79
202 203 2.505118 GAGCAGCTCGTGGTCGAC 60.505 66.667 6.67 7.13 43.56 4.20
206 207 4.057428 GACGGAGCAGCTCGTGGT 62.057 66.667 20.14 15.76 39.88 4.16
210 211 4.838486 GTCCGACGGAGCAGCTCG 62.838 72.222 18.98 13.54 29.39 5.03
217 218 0.750546 TAGATGGTGGTCCGACGGAG 60.751 60.000 18.98 0.00 36.30 4.63
218 219 1.033746 GTAGATGGTGGTCCGACGGA 61.034 60.000 13.88 13.88 36.30 4.69
219 220 1.317431 TGTAGATGGTGGTCCGACGG 61.317 60.000 7.84 7.84 36.30 4.79
220 221 0.744874 ATGTAGATGGTGGTCCGACG 59.255 55.000 0.00 0.00 36.30 5.12
221 222 1.202533 CCATGTAGATGGTGGTCCGAC 60.203 57.143 10.78 0.00 43.98 4.79
222 223 1.119684 CCATGTAGATGGTGGTCCGA 58.880 55.000 10.78 0.00 43.98 4.55
223 224 3.686622 CCATGTAGATGGTGGTCCG 57.313 57.895 10.78 0.00 43.98 4.79
231 232 1.306148 CAGTGCCTGCCATGTAGATG 58.694 55.000 0.00 0.00 0.00 2.90
232 233 3.794737 CAGTGCCTGCCATGTAGAT 57.205 52.632 0.00 0.00 0.00 1.98
248 249 4.749310 AGTCAAGAGCCGGCGCAG 62.749 66.667 32.12 22.87 37.52 5.18
249 250 4.742201 GAGTCAAGAGCCGGCGCA 62.742 66.667 32.12 8.99 37.52 6.09
250 251 3.064987 TAGAGTCAAGAGCCGGCGC 62.065 63.158 23.92 23.92 0.00 6.53
251 252 1.226717 GTAGAGTCAAGAGCCGGCG 60.227 63.158 23.20 6.78 0.00 6.46
252 253 1.142097 GGTAGAGTCAAGAGCCGGC 59.858 63.158 21.89 21.89 0.00 6.13
253 254 1.433879 CGGTAGAGTCAAGAGCCGG 59.566 63.158 0.00 0.00 36.05 6.13
254 255 1.226717 GCGGTAGAGTCAAGAGCCG 60.227 63.158 0.00 0.00 41.79 5.52
255 256 0.179124 CTGCGGTAGAGTCAAGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
256 257 0.528470 ACTGCGGTAGAGTCAAGAGC 59.472 55.000 0.00 0.00 0.00 4.09
257 258 2.356382 CCTACTGCGGTAGAGTCAAGAG 59.644 54.545 30.44 10.10 46.01 2.85
258 259 2.366533 CCTACTGCGGTAGAGTCAAGA 58.633 52.381 30.44 0.00 46.01 3.02
259 260 1.202313 GCCTACTGCGGTAGAGTCAAG 60.202 57.143 30.44 15.39 46.01 3.02
260 261 0.815734 GCCTACTGCGGTAGAGTCAA 59.184 55.000 30.44 0.00 46.01 3.18
261 262 2.490165 GCCTACTGCGGTAGAGTCA 58.510 57.895 30.44 0.00 46.01 3.41
271 272 4.175337 TCCCATGGCGCCTACTGC 62.175 66.667 29.70 0.00 0.00 4.40
272 273 2.109799 CTCCCATGGCGCCTACTG 59.890 66.667 29.70 20.97 0.00 2.74
273 274 3.164269 CCTCCCATGGCGCCTACT 61.164 66.667 29.70 9.66 0.00 2.57
274 275 2.742116 TTCCTCCCATGGCGCCTAC 61.742 63.158 29.70 0.50 0.00 3.18
275 276 2.366301 TTCCTCCCATGGCGCCTA 60.366 61.111 29.70 14.84 0.00 3.93
276 277 4.115199 GTTCCTCCCATGGCGCCT 62.115 66.667 29.70 10.60 0.00 5.52
277 278 4.115199 AGTTCCTCCCATGGCGCC 62.115 66.667 22.73 22.73 0.00 6.53
278 279 2.825836 CAGTTCCTCCCATGGCGC 60.826 66.667 6.09 0.00 0.00 6.53
279 280 2.124570 CCAGTTCCTCCCATGGCG 60.125 66.667 6.09 0.00 0.00 5.69
281 282 1.379044 GTGCCAGTTCCTCCCATGG 60.379 63.158 4.14 4.14 35.84 3.66
282 283 0.038744 AAGTGCCAGTTCCTCCCATG 59.961 55.000 0.00 0.00 0.00 3.66
283 284 0.329596 GAAGTGCCAGTTCCTCCCAT 59.670 55.000 0.52 0.00 0.00 4.00
284 285 1.761174 GAAGTGCCAGTTCCTCCCA 59.239 57.895 0.52 0.00 0.00 4.37
285 286 1.376037 CGAAGTGCCAGTTCCTCCC 60.376 63.158 6.69 0.00 0.00 4.30
286 287 1.371558 ACGAAGTGCCAGTTCCTCC 59.628 57.895 6.69 0.00 42.51 4.30
299 300 3.301835 CGCGTTTGGATCTATTGACGAAG 60.302 47.826 12.17 4.17 32.73 3.79
300 301 2.601314 CGCGTTTGGATCTATTGACGAA 59.399 45.455 12.17 0.00 32.73 3.85
301 302 2.190161 CGCGTTTGGATCTATTGACGA 58.810 47.619 12.17 0.00 32.73 4.20
302 303 1.924524 ACGCGTTTGGATCTATTGACG 59.075 47.619 5.58 0.00 0.00 4.35
303 304 4.088648 CAAACGCGTTTGGATCTATTGAC 58.911 43.478 42.59 0.00 44.47 3.18
304 305 4.335082 CAAACGCGTTTGGATCTATTGA 57.665 40.909 42.59 0.00 44.47 2.57
319 320 4.700365 GCTTGACCGGGCAAACGC 62.700 66.667 25.94 21.37 0.00 4.84
320 321 4.038080 GGCTTGACCGGGCAAACG 62.038 66.667 25.94 14.96 0.00 3.60
336 337 1.912371 GAAAGAACTTGAGCCGGCGG 61.912 60.000 24.35 24.35 0.00 6.13
337 338 1.497722 GAAAGAACTTGAGCCGGCG 59.502 57.895 23.20 9.47 0.00 6.46
338 339 1.497722 CGAAAGAACTTGAGCCGGC 59.502 57.895 21.89 21.89 0.00 6.13
339 340 0.320421 TCCGAAAGAACTTGAGCCGG 60.320 55.000 0.00 0.00 37.08 6.13
340 341 1.071605 CTCCGAAAGAACTTGAGCCG 58.928 55.000 0.00 0.00 0.00 5.52
341 342 0.799393 GCTCCGAAAGAACTTGAGCC 59.201 55.000 11.67 0.00 0.00 4.70
342 343 1.802069 AGCTCCGAAAGAACTTGAGC 58.198 50.000 13.69 13.69 0.00 4.26
343 344 4.170256 GACTAGCTCCGAAAGAACTTGAG 58.830 47.826 0.00 0.00 0.00 3.02
344 345 3.366070 CGACTAGCTCCGAAAGAACTTGA 60.366 47.826 0.00 0.00 0.00 3.02
345 346 2.917971 CGACTAGCTCCGAAAGAACTTG 59.082 50.000 0.00 0.00 0.00 3.16
346 347 2.671632 GCGACTAGCTCCGAAAGAACTT 60.672 50.000 7.18 0.00 44.04 2.66
347 348 1.135344 GCGACTAGCTCCGAAAGAACT 60.135 52.381 7.18 0.00 44.04 3.01
348 349 1.270068 GCGACTAGCTCCGAAAGAAC 58.730 55.000 7.18 0.00 44.04 3.01
349 350 3.715854 GCGACTAGCTCCGAAAGAA 57.284 52.632 7.18 0.00 44.04 2.52
359 360 0.388134 TTGTCAACGAGGCGACTAGC 60.388 55.000 0.00 0.00 44.43 3.42
360 361 1.337821 GTTGTCAACGAGGCGACTAG 58.662 55.000 0.00 0.00 44.43 2.57
361 362 3.484524 GTTGTCAACGAGGCGACTA 57.515 52.632 0.00 0.00 44.43 2.59
371 372 1.527311 GACTCAAGGAGCGTTGTCAAC 59.473 52.381 5.58 5.58 32.04 3.18
372 373 1.865865 GACTCAAGGAGCGTTGTCAA 58.134 50.000 3.26 0.00 32.04 3.18
373 374 0.318699 CGACTCAAGGAGCGTTGTCA 60.319 55.000 3.26 0.00 32.04 3.58
374 375 1.618640 GCGACTCAAGGAGCGTTGTC 61.619 60.000 10.19 0.00 33.97 3.18
375 376 1.664965 GCGACTCAAGGAGCGTTGT 60.665 57.895 10.19 0.00 33.97 3.32
376 377 2.383527 GGCGACTCAAGGAGCGTTG 61.384 63.158 10.19 0.00 33.97 4.10
377 378 2.048127 GGCGACTCAAGGAGCGTT 60.048 61.111 10.19 0.00 33.97 4.84
378 379 4.421479 CGGCGACTCAAGGAGCGT 62.421 66.667 0.00 0.00 33.97 5.07
380 381 2.221906 TTACCGGCGACTCAAGGAGC 62.222 60.000 9.30 0.00 32.04 4.70
381 382 0.458025 GTTACCGGCGACTCAAGGAG 60.458 60.000 9.30 0.00 35.52 3.69
382 383 1.180456 TGTTACCGGCGACTCAAGGA 61.180 55.000 9.30 0.00 0.00 3.36
383 384 0.736325 CTGTTACCGGCGACTCAAGG 60.736 60.000 9.30 0.00 0.00 3.61
384 385 1.352156 GCTGTTACCGGCGACTCAAG 61.352 60.000 9.30 1.06 32.22 3.02
385 386 1.373748 GCTGTTACCGGCGACTCAA 60.374 57.895 9.30 0.00 32.22 3.02
386 387 2.260434 GCTGTTACCGGCGACTCA 59.740 61.111 9.30 0.95 32.22 3.41
392 393 2.098831 GTTCTCCGCTGTTACCGGC 61.099 63.158 0.00 0.00 45.19 6.13
393 394 1.447314 GGTTCTCCGCTGTTACCGG 60.447 63.158 0.00 0.00 46.88 5.28
394 395 0.736325 CTGGTTCTCCGCTGTTACCG 60.736 60.000 0.00 0.00 36.30 4.02
395 396 0.606604 TCTGGTTCTCCGCTGTTACC 59.393 55.000 0.00 0.00 36.30 2.85
396 397 2.271800 CATCTGGTTCTCCGCTGTTAC 58.728 52.381 0.00 0.00 36.30 2.50
397 398 1.207089 CCATCTGGTTCTCCGCTGTTA 59.793 52.381 0.00 0.00 36.30 2.41
398 399 0.036010 CCATCTGGTTCTCCGCTGTT 60.036 55.000 0.00 0.00 36.30 3.16
399 400 0.904865 TCCATCTGGTTCTCCGCTGT 60.905 55.000 0.00 0.00 36.30 4.40
400 401 0.179089 CTCCATCTGGTTCTCCGCTG 60.179 60.000 0.00 0.00 36.30 5.18
401 402 1.965754 GCTCCATCTGGTTCTCCGCT 61.966 60.000 0.00 0.00 36.30 5.52
402 403 1.522580 GCTCCATCTGGTTCTCCGC 60.523 63.158 0.00 0.00 36.30 5.54
403 404 1.227089 CGCTCCATCTGGTTCTCCG 60.227 63.158 0.00 0.00 36.30 4.63
404 405 1.522580 GCGCTCCATCTGGTTCTCC 60.523 63.158 0.00 0.00 36.34 3.71
405 406 0.391661 TTGCGCTCCATCTGGTTCTC 60.392 55.000 9.73 0.00 36.34 2.87
406 407 0.254178 ATTGCGCTCCATCTGGTTCT 59.746 50.000 9.73 0.00 36.34 3.01
407 408 0.379669 CATTGCGCTCCATCTGGTTC 59.620 55.000 9.73 0.00 36.34 3.62
408 409 1.660560 GCATTGCGCTCCATCTGGTT 61.661 55.000 9.73 0.00 37.77 3.67
409 410 2.117156 GCATTGCGCTCCATCTGGT 61.117 57.895 9.73 0.00 37.77 4.00
410 411 2.719979 GCATTGCGCTCCATCTGG 59.280 61.111 9.73 0.00 37.77 3.86
421 422 3.134458 AGTTTAGCTATCTCCGCATTGC 58.866 45.455 0.00 0.00 0.00 3.56
422 423 4.084849 CGAAGTTTAGCTATCTCCGCATTG 60.085 45.833 0.00 0.00 0.00 2.82
423 424 4.051922 CGAAGTTTAGCTATCTCCGCATT 58.948 43.478 0.00 0.00 0.00 3.56
424 425 3.643763 CGAAGTTTAGCTATCTCCGCAT 58.356 45.455 0.00 0.00 0.00 4.73
425 426 2.798499 GCGAAGTTTAGCTATCTCCGCA 60.798 50.000 19.21 0.00 39.85 5.69
426 427 1.787731 GCGAAGTTTAGCTATCTCCGC 59.212 52.381 12.38 12.38 0.00 5.54
427 428 2.044860 CGCGAAGTTTAGCTATCTCCG 58.955 52.381 0.00 0.00 0.00 4.63
428 429 3.301706 CTCGCGAAGTTTAGCTATCTCC 58.698 50.000 11.33 0.00 0.00 3.71
429 430 2.722116 GCTCGCGAAGTTTAGCTATCTC 59.278 50.000 11.33 0.00 32.18 2.75
430 431 2.099263 TGCTCGCGAAGTTTAGCTATCT 59.901 45.455 11.33 0.00 35.95 1.98
431 432 2.460918 TGCTCGCGAAGTTTAGCTATC 58.539 47.619 11.33 0.00 35.95 2.08
432 433 2.099263 TCTGCTCGCGAAGTTTAGCTAT 59.901 45.455 11.33 0.00 35.95 2.97
433 434 1.471287 TCTGCTCGCGAAGTTTAGCTA 59.529 47.619 11.33 0.00 35.95 3.32
434 435 0.243907 TCTGCTCGCGAAGTTTAGCT 59.756 50.000 11.33 0.00 35.95 3.32
435 436 1.005557 CATCTGCTCGCGAAGTTTAGC 60.006 52.381 11.33 9.76 35.51 3.09
436 437 1.590238 CCATCTGCTCGCGAAGTTTAG 59.410 52.381 11.33 4.38 0.00 1.85
437 438 1.640428 CCATCTGCTCGCGAAGTTTA 58.360 50.000 11.33 0.00 0.00 2.01
438 439 1.639298 GCCATCTGCTCGCGAAGTTT 61.639 55.000 11.33 0.00 36.87 2.66
439 440 2.103042 GCCATCTGCTCGCGAAGTT 61.103 57.895 11.33 0.00 36.87 2.66
440 441 2.510238 GCCATCTGCTCGCGAAGT 60.510 61.111 11.33 0.00 36.87 3.01
449 450 1.134280 TCCTGAGCTTTAGCCATCTGC 60.134 52.381 0.00 0.00 43.38 4.26
450 451 2.996249 TCCTGAGCTTTAGCCATCTG 57.004 50.000 0.00 0.00 43.38 2.90
451 452 3.110705 TCTTCCTGAGCTTTAGCCATCT 58.889 45.455 0.00 0.00 43.38 2.90
452 453 3.550437 TCTTCCTGAGCTTTAGCCATC 57.450 47.619 0.00 0.00 43.38 3.51
453 454 5.309020 TGATATCTTCCTGAGCTTTAGCCAT 59.691 40.000 3.98 0.00 43.38 4.40
454 455 4.655649 TGATATCTTCCTGAGCTTTAGCCA 59.344 41.667 3.98 0.00 43.38 4.75
455 456 5.220710 TGATATCTTCCTGAGCTTTAGCC 57.779 43.478 3.98 0.00 43.38 3.93
456 457 5.176590 CGTTGATATCTTCCTGAGCTTTAGC 59.823 44.000 3.98 0.00 42.49 3.09
457 458 5.176590 GCGTTGATATCTTCCTGAGCTTTAG 59.823 44.000 3.98 0.00 0.00 1.85
458 459 5.050490 GCGTTGATATCTTCCTGAGCTTTA 58.950 41.667 3.98 0.00 0.00 1.85
459 460 3.873952 GCGTTGATATCTTCCTGAGCTTT 59.126 43.478 3.98 0.00 0.00 3.51
460 461 3.133721 AGCGTTGATATCTTCCTGAGCTT 59.866 43.478 3.98 0.00 0.00 3.74
461 462 2.697751 AGCGTTGATATCTTCCTGAGCT 59.302 45.455 3.98 0.00 0.00 4.09
462 463 2.799412 CAGCGTTGATATCTTCCTGAGC 59.201 50.000 3.98 0.82 0.00 4.26
463 464 4.297510 CTCAGCGTTGATATCTTCCTGAG 58.702 47.826 19.15 19.15 38.93 3.35
464 465 3.068732 CCTCAGCGTTGATATCTTCCTGA 59.931 47.826 1.26 9.31 31.68 3.86
465 466 3.388308 CCTCAGCGTTGATATCTTCCTG 58.612 50.000 1.26 5.75 31.68 3.86
466 467 2.366916 CCCTCAGCGTTGATATCTTCCT 59.633 50.000 1.26 0.00 31.68 3.36
467 468 2.365617 TCCCTCAGCGTTGATATCTTCC 59.634 50.000 1.26 0.00 31.68 3.46
468 469 3.068873 ACTCCCTCAGCGTTGATATCTTC 59.931 47.826 1.26 0.00 31.68 2.87
469 470 3.034635 ACTCCCTCAGCGTTGATATCTT 58.965 45.455 1.26 0.00 31.68 2.40
470 471 2.672098 ACTCCCTCAGCGTTGATATCT 58.328 47.619 1.26 0.00 31.68 1.98
471 472 3.460857 AACTCCCTCAGCGTTGATATC 57.539 47.619 1.26 0.00 31.68 1.63
472 473 5.070446 TCATTAACTCCCTCAGCGTTGATAT 59.930 40.000 1.26 0.00 31.68 1.63
473 474 4.404394 TCATTAACTCCCTCAGCGTTGATA 59.596 41.667 1.26 0.00 31.68 2.15
474 475 3.197766 TCATTAACTCCCTCAGCGTTGAT 59.802 43.478 1.26 0.00 31.68 2.57
475 476 2.565391 TCATTAACTCCCTCAGCGTTGA 59.435 45.455 0.88 0.88 0.00 3.18
476 477 2.972625 TCATTAACTCCCTCAGCGTTG 58.027 47.619 0.00 0.00 0.00 4.10
477 478 3.738281 CGATCATTAACTCCCTCAGCGTT 60.738 47.826 0.00 0.00 0.00 4.84
478 479 2.223829 CGATCATTAACTCCCTCAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
479 480 2.034685 TCGATCATTAACTCCCTCAGCG 59.965 50.000 0.00 0.00 0.00 5.18
480 481 3.735237 TCGATCATTAACTCCCTCAGC 57.265 47.619 0.00 0.00 0.00 4.26
481 482 5.459536 TGATCGATCATTAACTCCCTCAG 57.540 43.478 23.99 0.00 0.00 3.35
482 483 5.539955 TGATGATCGATCATTAACTCCCTCA 59.460 40.000 34.92 24.53 46.84 3.86
483 484 6.030548 TGATGATCGATCATTAACTCCCTC 57.969 41.667 34.92 22.58 46.84 4.30
484 485 6.425210 TTGATGATCGATCATTAACTCCCT 57.575 37.500 34.92 15.92 46.84 4.20
490 491 8.200120 ACAGAAGAGTTGATGATCGATCATTAA 58.800 33.333 34.92 32.77 46.84 1.40
491 492 7.720442 ACAGAAGAGTTGATGATCGATCATTA 58.280 34.615 34.92 29.71 46.84 1.90
492 493 6.580788 ACAGAAGAGTTGATGATCGATCATT 58.419 36.000 34.92 22.71 46.84 2.57
494 495 5.451103 GGACAGAAGAGTTGATGATCGATCA 60.451 44.000 29.09 29.09 39.47 2.92
495 496 4.981674 GGACAGAAGAGTTGATGATCGATC 59.018 45.833 18.72 18.72 0.00 3.69
496 497 4.403752 TGGACAGAAGAGTTGATGATCGAT 59.596 41.667 0.00 0.00 0.00 3.59
497 498 3.763897 TGGACAGAAGAGTTGATGATCGA 59.236 43.478 0.00 0.00 0.00 3.59
498 499 4.115401 TGGACAGAAGAGTTGATGATCG 57.885 45.455 0.00 0.00 0.00 3.69
499 500 5.668471 TCATGGACAGAAGAGTTGATGATC 58.332 41.667 0.00 0.00 0.00 2.92
500 501 5.688814 TCATGGACAGAAGAGTTGATGAT 57.311 39.130 0.00 0.00 0.00 2.45
501 502 5.668471 GATCATGGACAGAAGAGTTGATGA 58.332 41.667 0.00 0.00 0.00 2.92
502 503 4.507021 CGATCATGGACAGAAGAGTTGATG 59.493 45.833 0.00 0.00 0.00 3.07
503 504 4.403752 TCGATCATGGACAGAAGAGTTGAT 59.596 41.667 0.00 0.00 0.00 2.57
504 505 3.763897 TCGATCATGGACAGAAGAGTTGA 59.236 43.478 0.00 0.00 0.00 3.18
505 506 4.115401 TCGATCATGGACAGAAGAGTTG 57.885 45.455 0.00 0.00 0.00 3.16
506 507 4.403752 TGATCGATCATGGACAGAAGAGTT 59.596 41.667 23.99 0.00 0.00 3.01
507 508 3.956848 TGATCGATCATGGACAGAAGAGT 59.043 43.478 23.99 0.00 0.00 3.24
508 509 4.581077 TGATCGATCATGGACAGAAGAG 57.419 45.455 23.99 0.00 0.00 2.85
509 510 4.320788 CGATGATCGATCATGGACAGAAGA 60.321 45.833 38.50 10.56 46.84 2.87
510 511 3.919197 CGATGATCGATCATGGACAGAAG 59.081 47.826 38.50 17.89 46.84 2.85
511 512 3.569701 TCGATGATCGATCATGGACAGAA 59.430 43.478 38.50 21.17 46.84 3.02
512 513 3.149196 TCGATGATCGATCATGGACAGA 58.851 45.455 38.50 25.66 46.84 3.41
513 514 3.565905 TCGATGATCGATCATGGACAG 57.434 47.619 38.50 24.22 46.84 3.51
532 533 1.596477 GCCACCCATCGAGCTCATC 60.596 63.158 15.40 0.00 0.00 2.92
533 534 2.068821 AGCCACCCATCGAGCTCAT 61.069 57.895 15.40 3.67 0.00 2.90
534 535 2.685017 AGCCACCCATCGAGCTCA 60.685 61.111 15.40 1.08 0.00 4.26
535 536 2.202987 CAGCCACCCATCGAGCTC 60.203 66.667 2.73 2.73 31.93 4.09
536 537 3.005539 ACAGCCACCCATCGAGCT 61.006 61.111 0.00 0.00 35.52 4.09
537 538 2.821366 CACAGCCACCCATCGAGC 60.821 66.667 0.00 0.00 0.00 5.03
538 539 2.124983 CCACAGCCACCCATCGAG 60.125 66.667 0.00 0.00 0.00 4.04
539 540 4.408821 GCCACAGCCACCCATCGA 62.409 66.667 0.00 0.00 0.00 3.59
540 541 4.415150 AGCCACAGCCACCCATCG 62.415 66.667 0.00 0.00 41.25 3.84
541 542 2.753043 CAGCCACAGCCACCCATC 60.753 66.667 0.00 0.00 41.25 3.51
542 543 3.259314 TCAGCCACAGCCACCCAT 61.259 61.111 0.00 0.00 41.25 4.00
543 544 4.269523 GTCAGCCACAGCCACCCA 62.270 66.667 0.00 0.00 41.25 4.51
544 545 3.574074 ATGTCAGCCACAGCCACCC 62.574 63.158 0.00 0.00 38.85 4.61
545 546 2.034687 ATGTCAGCCACAGCCACC 59.965 61.111 0.00 0.00 38.85 4.61
546 547 0.890542 TTGATGTCAGCCACAGCCAC 60.891 55.000 0.00 0.00 41.05 5.01
547 548 0.178995 TTTGATGTCAGCCACAGCCA 60.179 50.000 0.00 0.00 41.05 4.75
548 549 1.180029 ATTTGATGTCAGCCACAGCC 58.820 50.000 0.00 0.00 41.05 4.85
549 550 2.602878 CAATTTGATGTCAGCCACAGC 58.397 47.619 0.00 0.00 42.20 4.40
550 551 2.029739 TGCAATTTGATGTCAGCCACAG 60.030 45.455 0.00 0.00 38.85 3.66
551 552 1.962100 TGCAATTTGATGTCAGCCACA 59.038 42.857 0.00 0.00 40.18 4.17
555 556 2.029649 ACCACTGCAATTTGATGTCAGC 60.030 45.455 0.00 0.00 31.75 4.26
569 570 3.926616 TGTAAGAGAAGCTAACCACTGC 58.073 45.455 0.00 0.00 0.00 4.40
570 571 4.872691 CCATGTAAGAGAAGCTAACCACTG 59.127 45.833 0.00 0.00 0.00 3.66
571 572 4.624125 GCCATGTAAGAGAAGCTAACCACT 60.624 45.833 0.00 0.00 0.00 4.00
572 573 3.623510 GCCATGTAAGAGAAGCTAACCAC 59.376 47.826 0.00 0.00 0.00 4.16
573 574 3.519510 AGCCATGTAAGAGAAGCTAACCA 59.480 43.478 0.00 0.00 0.00 3.67
574 575 4.143986 AGCCATGTAAGAGAAGCTAACC 57.856 45.455 0.00 0.00 0.00 2.85
590 592 2.744202 GACGAACATGTCTGAAAGCCAT 59.256 45.455 0.00 0.00 35.95 4.40
600 602 1.823828 ATAGCGTCGACGAACATGTC 58.176 50.000 39.74 20.48 43.02 3.06
611 613 7.088905 ACATAAGACCCTAAATTATAGCGTCG 58.911 38.462 0.00 0.00 30.12 5.12
613 615 8.191534 AGACATAAGACCCTAAATTATAGCGT 57.808 34.615 0.00 0.00 0.00 5.07
623 625 6.630203 TTTAGCCAAGACATAAGACCCTAA 57.370 37.500 0.00 0.00 0.00 2.69
672 674 5.238650 ACACCACTGCAAAGAGTATACAAAC 59.761 40.000 5.50 0.00 0.00 2.93
703 705 7.870954 ACGTCGGCATCTTATCTTATTTAATCA 59.129 33.333 0.00 0.00 0.00 2.57
704 706 8.240883 ACGTCGGCATCTTATCTTATTTAATC 57.759 34.615 0.00 0.00 0.00 1.75
705 707 8.603242 AACGTCGGCATCTTATCTTATTTAAT 57.397 30.769 0.00 0.00 0.00 1.40
706 708 7.924412 AGAACGTCGGCATCTTATCTTATTTAA 59.076 33.333 0.00 0.00 0.00 1.52
707 709 7.431249 AGAACGTCGGCATCTTATCTTATTTA 58.569 34.615 0.00 0.00 0.00 1.40
708 710 6.281405 AGAACGTCGGCATCTTATCTTATTT 58.719 36.000 0.00 0.00 0.00 1.40
709 711 5.844004 AGAACGTCGGCATCTTATCTTATT 58.156 37.500 0.00 0.00 0.00 1.40
710 712 5.455056 AGAACGTCGGCATCTTATCTTAT 57.545 39.130 0.00 0.00 0.00 1.73
711 713 4.913335 AGAACGTCGGCATCTTATCTTA 57.087 40.909 0.00 0.00 0.00 2.10
712 714 3.802948 AGAACGTCGGCATCTTATCTT 57.197 42.857 0.00 0.00 0.00 2.40
713 715 4.913335 TTAGAACGTCGGCATCTTATCT 57.087 40.909 0.00 0.00 0.00 1.98
714 716 5.961395 TTTTAGAACGTCGGCATCTTATC 57.039 39.130 0.00 0.00 0.00 1.75
738 740 1.395635 GGGAGGTTTGGTTTCGTGTT 58.604 50.000 0.00 0.00 0.00 3.32
746 748 1.147191 GAGAAAAGGGGGAGGTTTGGT 59.853 52.381 0.00 0.00 0.00 3.67
747 749 1.550179 GGAGAAAAGGGGGAGGTTTGG 60.550 57.143 0.00 0.00 0.00 3.28
748 750 1.146982 TGGAGAAAAGGGGGAGGTTTG 59.853 52.381 0.00 0.00 0.00 2.93
760 783 1.072505 GCGTGGGGACTGGAGAAAA 59.927 57.895 0.00 0.00 0.00 2.29
1204 1229 3.148279 GGAGGTGGAGCCGACGAT 61.148 66.667 0.00 0.00 43.70 3.73
1211 1236 2.371259 GGGAGGAAGGAGGTGGAGC 61.371 68.421 0.00 0.00 0.00 4.70
1315 1340 4.779733 TGAGGAGCGGGAGGGGAC 62.780 72.222 0.00 0.00 0.00 4.46
1365 1390 3.426695 CGAAAGCAATCTTCTCCGCATTT 60.427 43.478 0.00 0.00 0.00 2.32
1422 1447 2.633481 ACTCTGAACTAAGGGCGAAACT 59.367 45.455 0.00 0.00 0.00 2.66
1434 1459 3.808618 GCTTGAACCCATCACTCTGAACT 60.809 47.826 0.00 0.00 37.92 3.01
1574 1599 1.002087 GTGACTCGACCCTGAACCAAT 59.998 52.381 0.00 0.00 0.00 3.16
1683 1708 1.878070 CAGCACCGCACATTGTGAT 59.122 52.632 20.77 2.05 35.23 3.06
1709 1734 2.038659 CAAACCAACACAACTCCCCAT 58.961 47.619 0.00 0.00 0.00 4.00
1774 1799 0.967380 CCCCAGTCTTCACCATTGCC 60.967 60.000 0.00 0.00 0.00 4.52
1803 1828 1.811266 CGCTCCATACGCACAGCTT 60.811 57.895 0.00 0.00 0.00 3.74
1839 1864 1.360192 GGCTTTTGTGCTTGCGACT 59.640 52.632 0.00 0.00 0.00 4.18
1951 1976 1.639722 AATAACCCTGGCAACCCAAC 58.360 50.000 0.00 0.00 41.58 3.77
1968 1993 5.452356 CCTGTCAAAAGGCTCAGTTTCAAAT 60.452 40.000 0.00 0.00 0.00 2.32
2230 2255 3.490348 ACAAACTGAACTCCCCATTCTG 58.510 45.455 0.00 0.00 0.00 3.02
2231 2256 3.884037 ACAAACTGAACTCCCCATTCT 57.116 42.857 0.00 0.00 0.00 2.40
2341 2366 1.836802 TCATTGCTGCAGCCACAATA 58.163 45.000 34.64 13.43 41.18 1.90
2360 2385 8.341173 GCGTTGAGAATATCTCTTTCATGATTT 58.659 33.333 8.68 0.00 43.73 2.17
2643 2668 2.286365 TGGTGGAGACATTTTCACCC 57.714 50.000 8.60 0.00 46.54 4.61
2688 2713 6.499106 TTGCCCTTCAGATGTTCATATAGA 57.501 37.500 0.00 0.00 0.00 1.98
2743 2768 3.192844 TGATCTCTGTCTCCGTTAACACC 59.807 47.826 6.39 0.00 0.00 4.16
2784 2809 0.387622 CCTCTGCAAATGCCAACACG 60.388 55.000 2.46 0.00 41.18 4.49
2811 2836 2.588314 GGCAGCGAGCTGGATCTG 60.588 66.667 24.25 0.00 43.77 2.90
3328 3353 9.503399 AAGAGTAAACTTATTTTCAATCCGAGT 57.497 29.630 0.00 0.00 0.00 4.18
3381 3406 1.228245 AGCGGCCTTTTGCTCTTCA 60.228 52.632 0.00 0.00 36.53 3.02
3462 3487 1.064017 AGTGTCCCAGCTTTTCCACAA 60.064 47.619 6.23 0.00 0.00 3.33
3480 3505 1.425066 TGTTCAGGCCCAGAATCAAGT 59.575 47.619 11.03 0.00 0.00 3.16
3792 3942 2.938956 ATGTCTATACCAGGCCAAGC 57.061 50.000 5.01 0.00 0.00 4.01
4013 4220 9.959749 CAAAGTGAAGGCTAAAAACTGTAATTA 57.040 29.630 0.00 0.00 0.00 1.40
4028 4235 2.878406 TGCTAACAGTCAAAGTGAAGGC 59.122 45.455 0.00 0.00 0.00 4.35
4085 4293 4.385358 TCAAACTCCAAAGGAACAAAGC 57.615 40.909 0.00 0.00 0.00 3.51
4135 4343 0.544697 ACTACGGCCCTGGTTAATGG 59.455 55.000 0.00 0.00 0.00 3.16
4321 4824 3.719268 TCCAAAAGGCTTAGAGCATGA 57.281 42.857 0.00 0.00 44.75 3.07
4583 5087 6.016276 ACCATTAGAAAGTGTGAACCACAATC 60.016 38.462 0.95 1.91 46.28 2.67
4584 5088 5.833131 ACCATTAGAAAGTGTGAACCACAAT 59.167 36.000 0.95 0.00 46.28 2.71
4590 5094 6.489022 ACCCTTTACCATTAGAAAGTGTGAAC 59.511 38.462 0.00 0.00 31.89 3.18
4656 5160 8.215050 TGAGAAGGACCTCTAAATTAACAACAA 58.785 33.333 0.00 0.00 34.38 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.