Multiple sequence alignment - TraesCS4D01G230000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G230000 chr4D 100.000 5177 0 0 1 5177 389571516 389576692 0.000000e+00 9561.0
1 TraesCS4D01G230000 chr4B 96.699 4635 87 26 563 5177 479673179 479677767 0.000000e+00 7651.0
2 TraesCS4D01G230000 chr4A 95.512 1738 44 10 3452 5177 71253087 71254802 0.000000e+00 2747.0
3 TraesCS4D01G230000 chr4A 96.233 1407 39 7 1934 3334 71251688 71253086 0.000000e+00 2292.0
4 TraesCS4D01G230000 chr4A 95.173 1388 45 13 563 1939 71250227 71251603 0.000000e+00 2172.0
5 TraesCS4D01G230000 chr4A 96.761 247 8 0 4664 4910 71255473 71255719 3.730000e-111 412.0
6 TraesCS4D01G230000 chr4A 82.258 124 19 2 2010 2132 423437162 423437041 2.550000e-18 104.0
7 TraesCS4D01G230000 chr4A 88.312 77 8 1 3629 3705 423436619 423436544 1.990000e-14 91.6
8 TraesCS4D01G230000 chrUn 100.000 390 0 0 3955 4344 479987893 479987504 0.000000e+00 721.0
9 TraesCS4D01G230000 chr2B 75.360 556 109 20 2 544 786248294 786248834 5.180000e-60 243.0
10 TraesCS4D01G230000 chr2B 77.654 358 69 8 5 359 636819696 636820045 1.890000e-49 207.0
11 TraesCS4D01G230000 chr2B 75.676 222 50 4 2 221 637864211 637863992 1.970000e-19 108.0
12 TraesCS4D01G230000 chr6D 92.593 81 6 0 3623 3703 282079116 282079036 3.280000e-22 117.0
13 TraesCS4D01G230000 chr6D 73.737 297 71 7 2 295 152253965 152254257 5.480000e-20 110.0
14 TraesCS4D01G230000 chr7B 88.298 94 9 2 3613 3705 16931978 16931886 1.520000e-20 111.0
15 TraesCS4D01G230000 chr1A 80.741 135 26 0 2 136 28704843 28704709 7.090000e-19 106.0
16 TraesCS4D01G230000 chr1B 90.667 75 6 1 3629 3703 524393895 524393822 1.190000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G230000 chr4D 389571516 389576692 5176 False 9561.00 9561 100.00000 1 5177 1 chr4D.!!$F1 5176
1 TraesCS4D01G230000 chr4B 479673179 479677767 4588 False 7651.00 7651 96.69900 563 5177 1 chr4B.!!$F1 4614
2 TraesCS4D01G230000 chr4A 71250227 71255719 5492 False 1905.75 2747 95.91975 563 5177 4 chr4A.!!$F1 4614
3 TraesCS4D01G230000 chr2B 786248294 786248834 540 False 243.00 243 75.36000 2 544 1 chr2B.!!$F2 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.034896 CCACGTTTGGCTGTAGGTCT 59.965 55.000 0.00 0.0 35.56 3.85 F
282 283 0.034896 TCCTCACGAAGGCCAAGTTC 59.965 55.000 5.01 0.0 45.78 3.01 F
283 284 0.035458 CCTCACGAAGGCCAAGTTCT 59.965 55.000 5.01 0.0 38.67 3.01 F
1131 1152 0.034477 ATTTAACGCCCCTCACCTGG 60.034 55.000 0.00 0.0 0.00 4.45 F
1132 1153 1.128809 TTTAACGCCCCTCACCTGGA 61.129 55.000 0.00 0.0 0.00 3.86 F
1377 1399 1.471829 TTCTTCCTGGCGCTGTCTCA 61.472 55.000 7.64 0.0 0.00 3.27 F
2953 3071 3.496884 GCTTTTGCGATATATCCGTTCCA 59.503 43.478 7.15 0.0 34.86 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1129 1150 0.842030 AATCAGCTGGTCCAGGTCCA 60.842 55.000 20.9 10.87 40.40 4.02 R
1130 1151 1.204146 TAATCAGCTGGTCCAGGTCC 58.796 55.000 20.9 3.69 40.40 4.46 R
1570 1592 1.988293 TGGTTACCACCCAACATGTG 58.012 50.000 0.0 0.00 43.49 3.21 R
2952 3070 0.109597 GTTTGCCGATTCCTGCACTG 60.110 55.000 0.0 0.00 37.18 3.66 R
2953 3071 1.577328 CGTTTGCCGATTCCTGCACT 61.577 55.000 0.0 0.00 39.56 4.40 R
3211 3331 1.286553 AGAGGATGGAGAAGAGACGGT 59.713 52.381 0.0 0.00 0.00 4.83 R
4822 4950 0.603707 GCCTGTTGAGCTGTGCAGTA 60.604 55.000 0.0 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.385433 AGATCACTGCATCTCCTCAGAAG 59.615 47.826 0.00 0.00 34.57 2.85
28 29 2.842496 TGCATCTCCTCAGAAGTTCCAT 59.158 45.455 0.00 0.00 30.24 3.41
37 38 3.184628 TCAGAAGTTCCATGGACCATCT 58.815 45.455 15.91 13.04 0.00 2.90
67 68 1.145900 TCTCCCAATCCCCCAAGCAA 61.146 55.000 0.00 0.00 0.00 3.91
76 77 1.188863 CCCCCAAGCAAGAGAATTGG 58.811 55.000 0.00 0.00 42.59 3.16
79 80 2.517959 CCCAAGCAAGAGAATTGGACA 58.482 47.619 4.79 0.00 45.19 4.02
85 86 4.573900 AGCAAGAGAATTGGACAGTGTAG 58.426 43.478 0.00 0.00 0.00 2.74
95 96 5.871396 TTGGACAGTGTAGAGATTATCCC 57.129 43.478 0.00 0.00 0.00 3.85
100 101 6.209788 GGACAGTGTAGAGATTATCCCCTAAG 59.790 46.154 0.00 0.00 0.00 2.18
118 119 5.012046 CCCTAAGGGTTTGAATTTTGCTTCT 59.988 40.000 0.00 0.00 38.25 2.85
121 122 4.129380 AGGGTTTGAATTTTGCTTCTTGC 58.871 39.130 0.00 0.00 43.25 4.01
124 125 2.798976 TGAATTTTGCTTCTTGCGCT 57.201 40.000 9.73 0.00 46.63 5.92
139 140 4.445699 GCTATGTCCCAAGCGGAG 57.554 61.111 0.00 0.00 43.19 4.63
154 155 2.148916 CGGAGCGCATATTCCTGTAA 57.851 50.000 11.47 0.00 0.00 2.41
160 161 3.377172 AGCGCATATTCCTGTAAAACCAC 59.623 43.478 11.47 0.00 0.00 4.16
161 162 3.787476 GCGCATATTCCTGTAAAACCACG 60.787 47.826 0.30 0.00 0.00 4.94
162 163 3.372822 CGCATATTCCTGTAAAACCACGT 59.627 43.478 0.00 0.00 0.00 4.49
163 164 4.142773 CGCATATTCCTGTAAAACCACGTT 60.143 41.667 0.00 0.00 0.00 3.99
164 165 5.618195 CGCATATTCCTGTAAAACCACGTTT 60.618 40.000 0.00 0.00 37.34 3.60
165 166 5.571357 GCATATTCCTGTAAAACCACGTTTG 59.429 40.000 0.00 0.00 35.80 2.93
174 175 4.792087 CCACGTTTGGCTGTAGGT 57.208 55.556 0.00 0.00 35.56 3.08
175 176 2.540145 CCACGTTTGGCTGTAGGTC 58.460 57.895 0.00 0.00 35.56 3.85
176 177 0.034896 CCACGTTTGGCTGTAGGTCT 59.965 55.000 0.00 0.00 35.56 3.85
177 178 1.542547 CCACGTTTGGCTGTAGGTCTT 60.543 52.381 0.00 0.00 35.56 3.01
178 179 1.531149 CACGTTTGGCTGTAGGTCTTG 59.469 52.381 0.00 0.00 0.00 3.02
179 180 1.140252 ACGTTTGGCTGTAGGTCTTGT 59.860 47.619 0.00 0.00 0.00 3.16
180 181 2.218603 CGTTTGGCTGTAGGTCTTGTT 58.781 47.619 0.00 0.00 0.00 2.83
181 182 2.032030 CGTTTGGCTGTAGGTCTTGTTG 60.032 50.000 0.00 0.00 0.00 3.33
182 183 2.270352 TTGGCTGTAGGTCTTGTTGG 57.730 50.000 0.00 0.00 0.00 3.77
183 184 1.136828 TGGCTGTAGGTCTTGTTGGT 58.863 50.000 0.00 0.00 0.00 3.67
184 185 1.202758 TGGCTGTAGGTCTTGTTGGTG 60.203 52.381 0.00 0.00 0.00 4.17
185 186 1.202770 GGCTGTAGGTCTTGTTGGTGT 60.203 52.381 0.00 0.00 0.00 4.16
186 187 2.572290 GCTGTAGGTCTTGTTGGTGTT 58.428 47.619 0.00 0.00 0.00 3.32
187 188 3.495453 GGCTGTAGGTCTTGTTGGTGTTA 60.495 47.826 0.00 0.00 0.00 2.41
188 189 4.131596 GCTGTAGGTCTTGTTGGTGTTAA 58.868 43.478 0.00 0.00 0.00 2.01
189 190 4.024302 GCTGTAGGTCTTGTTGGTGTTAAC 60.024 45.833 0.00 0.00 0.00 2.01
199 200 3.170360 GGTGTTAACCCTAGCCAGC 57.830 57.895 2.48 0.00 41.04 4.85
200 201 0.743345 GGTGTTAACCCTAGCCAGCG 60.743 60.000 2.48 0.00 41.04 5.18
201 202 1.078708 TGTTAACCCTAGCCAGCGC 60.079 57.895 0.00 0.00 0.00 5.92
202 203 2.171725 GTTAACCCTAGCCAGCGCG 61.172 63.158 0.00 0.00 41.18 6.86
203 204 2.352821 TTAACCCTAGCCAGCGCGA 61.353 57.895 12.10 0.00 41.18 5.87
204 205 1.682451 TTAACCCTAGCCAGCGCGAT 61.682 55.000 12.10 0.00 41.18 4.58
205 206 2.083835 TAACCCTAGCCAGCGCGATC 62.084 60.000 12.10 0.00 41.18 3.69
206 207 4.671569 CCCTAGCCAGCGCGATCC 62.672 72.222 12.10 0.00 41.18 3.36
207 208 3.916544 CCTAGCCAGCGCGATCCA 61.917 66.667 12.10 0.00 41.18 3.41
208 209 2.341543 CTAGCCAGCGCGATCCAT 59.658 61.111 12.10 0.00 41.18 3.41
209 210 1.735920 CTAGCCAGCGCGATCCATC 60.736 63.158 12.10 0.00 41.18 3.51
210 211 2.152297 CTAGCCAGCGCGATCCATCT 62.152 60.000 12.10 0.00 41.18 2.90
211 212 0.893727 TAGCCAGCGCGATCCATCTA 60.894 55.000 12.10 0.00 41.18 1.98
212 213 1.735920 GCCAGCGCGATCCATCTAG 60.736 63.158 12.10 0.00 0.00 2.43
213 214 1.080230 CCAGCGCGATCCATCTAGG 60.080 63.158 12.10 0.00 39.47 3.02
214 215 1.735920 CAGCGCGATCCATCTAGGC 60.736 63.158 12.10 0.00 37.29 3.93
216 217 2.807045 CGCGATCCATCTAGGCGC 60.807 66.667 0.00 0.00 42.99 6.53
217 218 2.433318 GCGATCCATCTAGGCGCC 60.433 66.667 21.89 21.89 41.32 6.53
218 219 2.936912 GCGATCCATCTAGGCGCCT 61.937 63.158 34.85 34.85 41.32 5.52
219 220 1.214062 CGATCCATCTAGGCGCCTC 59.786 63.158 36.73 15.64 37.29 4.70
220 221 1.594310 GATCCATCTAGGCGCCTCC 59.406 63.158 36.73 2.07 37.29 4.30
221 222 2.219325 GATCCATCTAGGCGCCTCCG 62.219 65.000 36.73 25.28 40.77 4.63
222 223 3.996124 CCATCTAGGCGCCTCCGG 61.996 72.222 36.73 24.39 40.77 5.14
238 239 4.856607 GGCGACGCCTCCTTCTCG 62.857 72.222 31.30 0.00 46.69 4.04
239 240 4.117661 GCGACGCCTCCTTCTCGT 62.118 66.667 9.14 0.00 39.33 4.18
240 241 2.100603 CGACGCCTCCTTCTCGTC 59.899 66.667 4.18 4.18 46.23 4.20
242 243 3.773370 ACGCCTCCTTCTCGTCAA 58.227 55.556 0.00 0.00 0.00 3.18
243 244 2.046938 ACGCCTCCTTCTCGTCAAA 58.953 52.632 0.00 0.00 0.00 2.69
244 245 0.038159 ACGCCTCCTTCTCGTCAAAG 60.038 55.000 0.00 0.00 0.00 2.77
245 246 0.243907 CGCCTCCTTCTCGTCAAAGA 59.756 55.000 0.00 0.00 0.00 2.52
246 247 1.134965 CGCCTCCTTCTCGTCAAAGAT 60.135 52.381 0.00 0.00 0.00 2.40
247 248 2.275318 GCCTCCTTCTCGTCAAAGATG 58.725 52.381 0.00 0.00 0.00 2.90
248 249 2.898705 CCTCCTTCTCGTCAAAGATGG 58.101 52.381 0.00 0.00 40.35 3.51
249 250 2.275318 CTCCTTCTCGTCAAAGATGGC 58.725 52.381 0.00 0.00 39.37 4.40
261 262 4.327885 GATGGCGTCATCGAGGTC 57.672 61.111 15.22 0.00 40.15 3.85
262 263 1.300233 GATGGCGTCATCGAGGTCC 60.300 63.158 15.22 0.00 40.15 4.46
263 264 1.739338 GATGGCGTCATCGAGGTCCT 61.739 60.000 15.22 0.00 40.15 3.85
264 265 1.739338 ATGGCGTCATCGAGGTCCTC 61.739 60.000 9.05 9.05 39.71 3.71
265 266 2.413765 GCGTCATCGAGGTCCTCC 59.586 66.667 13.54 0.00 39.71 4.30
275 276 1.985116 AGGTCCTCCTCACGAAGGC 60.985 63.158 0.00 0.00 45.78 4.35
276 277 2.579738 GTCCTCCTCACGAAGGCC 59.420 66.667 0.00 0.00 45.78 5.19
277 278 2.119611 TCCTCCTCACGAAGGCCA 59.880 61.111 5.01 0.00 45.78 5.36
278 279 1.535444 TCCTCCTCACGAAGGCCAA 60.535 57.895 5.01 0.00 45.78 4.52
279 280 1.078848 CCTCCTCACGAAGGCCAAG 60.079 63.158 5.01 0.00 45.78 3.61
280 281 1.674057 CTCCTCACGAAGGCCAAGT 59.326 57.895 5.01 0.00 45.78 3.16
281 282 0.035458 CTCCTCACGAAGGCCAAGTT 59.965 55.000 5.01 0.00 45.78 2.66
282 283 0.034896 TCCTCACGAAGGCCAAGTTC 59.965 55.000 5.01 0.00 45.78 3.01
283 284 0.035458 CCTCACGAAGGCCAAGTTCT 59.965 55.000 5.01 0.00 38.67 3.01
284 285 1.151668 CTCACGAAGGCCAAGTTCTG 58.848 55.000 5.01 1.30 0.00 3.02
285 286 0.884704 TCACGAAGGCCAAGTTCTGC 60.885 55.000 5.01 0.00 0.00 4.26
293 294 1.760192 GCCAAGTTCTGCCATCATCT 58.240 50.000 0.00 0.00 0.00 2.90
294 295 2.097825 GCCAAGTTCTGCCATCATCTT 58.902 47.619 0.00 0.00 0.00 2.40
295 296 2.494870 GCCAAGTTCTGCCATCATCTTT 59.505 45.455 0.00 0.00 0.00 2.52
296 297 3.056322 GCCAAGTTCTGCCATCATCTTTT 60.056 43.478 0.00 0.00 0.00 2.27
297 298 4.741342 CCAAGTTCTGCCATCATCTTTTC 58.259 43.478 0.00 0.00 0.00 2.29
298 299 4.381292 CCAAGTTCTGCCATCATCTTTTCC 60.381 45.833 0.00 0.00 0.00 3.13
299 300 4.038271 AGTTCTGCCATCATCTTTTCCA 57.962 40.909 0.00 0.00 0.00 3.53
300 301 3.760684 AGTTCTGCCATCATCTTTTCCAC 59.239 43.478 0.00 0.00 0.00 4.02
301 302 3.438216 TCTGCCATCATCTTTTCCACA 57.562 42.857 0.00 0.00 0.00 4.17
302 303 3.972133 TCTGCCATCATCTTTTCCACAT 58.028 40.909 0.00 0.00 0.00 3.21
303 304 4.346730 TCTGCCATCATCTTTTCCACATT 58.653 39.130 0.00 0.00 0.00 2.71
304 305 4.158949 TCTGCCATCATCTTTTCCACATTG 59.841 41.667 0.00 0.00 0.00 2.82
305 306 3.192466 GCCATCATCTTTTCCACATTGC 58.808 45.455 0.00 0.00 0.00 3.56
306 307 3.118884 GCCATCATCTTTTCCACATTGCT 60.119 43.478 0.00 0.00 0.00 3.91
307 308 4.098349 GCCATCATCTTTTCCACATTGCTA 59.902 41.667 0.00 0.00 0.00 3.49
308 309 5.394443 GCCATCATCTTTTCCACATTGCTAA 60.394 40.000 0.00 0.00 0.00 3.09
309 310 6.270815 CCATCATCTTTTCCACATTGCTAAG 58.729 40.000 0.00 0.00 0.00 2.18
310 311 5.314923 TCATCTTTTCCACATTGCTAAGC 57.685 39.130 0.00 0.00 0.00 3.09
311 312 4.158394 TCATCTTTTCCACATTGCTAAGCC 59.842 41.667 0.00 0.00 0.00 4.35
312 313 2.825532 TCTTTTCCACATTGCTAAGCCC 59.174 45.455 0.00 0.00 0.00 5.19
313 314 2.300956 TTTCCACATTGCTAAGCCCA 57.699 45.000 0.00 0.00 0.00 5.36
314 315 1.838112 TTCCACATTGCTAAGCCCAG 58.162 50.000 0.00 0.00 0.00 4.45
315 316 0.991146 TCCACATTGCTAAGCCCAGA 59.009 50.000 0.00 0.00 0.00 3.86
316 317 1.065199 TCCACATTGCTAAGCCCAGAG 60.065 52.381 0.00 0.00 0.00 3.35
317 318 1.386533 CACATTGCTAAGCCCAGAGG 58.613 55.000 0.00 0.00 0.00 3.69
318 319 1.065199 CACATTGCTAAGCCCAGAGGA 60.065 52.381 0.00 0.00 33.47 3.71
319 320 1.635487 ACATTGCTAAGCCCAGAGGAA 59.365 47.619 0.00 0.00 33.47 3.36
320 321 2.019984 CATTGCTAAGCCCAGAGGAAC 58.980 52.381 0.00 0.00 33.47 3.62
321 322 0.328258 TTGCTAAGCCCAGAGGAACC 59.672 55.000 0.00 0.00 33.47 3.62
322 323 1.224870 GCTAAGCCCAGAGGAACCC 59.775 63.158 0.00 0.00 33.47 4.11
323 324 1.522569 CTAAGCCCAGAGGAACCCG 59.477 63.158 0.00 0.00 33.47 5.28
324 325 0.976073 CTAAGCCCAGAGGAACCCGA 60.976 60.000 0.00 0.00 33.47 5.14
325 326 0.545787 TAAGCCCAGAGGAACCCGAA 60.546 55.000 0.00 0.00 33.47 4.30
326 327 1.842381 AAGCCCAGAGGAACCCGAAG 61.842 60.000 0.00 0.00 33.47 3.79
327 328 2.269241 CCCAGAGGAACCCGAAGC 59.731 66.667 0.00 0.00 33.47 3.86
328 329 2.294078 CCCAGAGGAACCCGAAGCT 61.294 63.158 0.00 0.00 33.47 3.74
329 330 1.219393 CCAGAGGAACCCGAAGCTC 59.781 63.158 0.00 0.00 0.00 4.09
330 331 1.219393 CAGAGGAACCCGAAGCTCC 59.781 63.158 0.00 0.00 0.00 4.70
331 332 1.229209 AGAGGAACCCGAAGCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
332 333 0.618968 AGAGGAACCCGAAGCTCCAT 60.619 55.000 0.00 0.00 0.00 3.41
333 334 0.179070 GAGGAACCCGAAGCTCCATC 60.179 60.000 0.00 0.00 0.00 3.51
334 335 0.909610 AGGAACCCGAAGCTCCATCA 60.910 55.000 0.00 0.00 0.00 3.07
335 336 0.462759 GGAACCCGAAGCTCCATCAG 60.463 60.000 0.00 0.00 0.00 2.90
336 337 0.537188 GAACCCGAAGCTCCATCAGA 59.463 55.000 0.00 0.00 0.00 3.27
337 338 1.139853 GAACCCGAAGCTCCATCAGAT 59.860 52.381 0.00 0.00 0.00 2.90
338 339 0.467384 ACCCGAAGCTCCATCAGATG 59.533 55.000 3.04 3.04 0.00 2.90
339 340 0.883814 CCCGAAGCTCCATCAGATGC 60.884 60.000 4.68 0.00 0.00 3.91
340 341 0.883814 CCGAAGCTCCATCAGATGCC 60.884 60.000 4.68 0.00 0.00 4.40
341 342 0.179065 CGAAGCTCCATCAGATGCCA 60.179 55.000 4.68 0.00 0.00 4.92
342 343 1.542767 CGAAGCTCCATCAGATGCCAT 60.543 52.381 4.68 0.00 0.00 4.40
343 344 2.152830 GAAGCTCCATCAGATGCCATC 58.847 52.381 4.68 0.00 0.00 3.51
344 345 1.436326 AGCTCCATCAGATGCCATCT 58.564 50.000 0.08 0.08 41.15 2.90
345 346 2.617658 AGCTCCATCAGATGCCATCTA 58.382 47.619 6.94 0.00 37.58 1.98
346 347 2.568062 AGCTCCATCAGATGCCATCTAG 59.432 50.000 6.94 1.95 37.58 2.43
347 348 2.566279 GCTCCATCAGATGCCATCTAGA 59.434 50.000 6.94 7.95 37.58 2.43
348 349 3.198200 GCTCCATCAGATGCCATCTAGAT 59.802 47.826 6.94 9.82 37.58 1.98
349 350 4.681244 GCTCCATCAGATGCCATCTAGATC 60.681 50.000 6.94 0.00 37.58 2.75
350 351 4.422984 TCCATCAGATGCCATCTAGATCA 58.577 43.478 6.94 0.00 37.58 2.92
351 352 4.222366 TCCATCAGATGCCATCTAGATCAC 59.778 45.833 6.94 0.00 37.58 3.06
352 353 4.223255 CCATCAGATGCCATCTAGATCACT 59.777 45.833 6.94 0.00 37.58 3.41
353 354 5.421374 CCATCAGATGCCATCTAGATCACTA 59.579 44.000 6.94 0.00 37.58 2.74
354 355 6.070938 CCATCAGATGCCATCTAGATCACTAA 60.071 42.308 6.94 0.00 37.58 2.24
355 356 6.338214 TCAGATGCCATCTAGATCACTAAC 57.662 41.667 6.94 0.00 37.58 2.34
356 357 5.244851 TCAGATGCCATCTAGATCACTAACC 59.755 44.000 6.94 0.00 37.58 2.85
357 358 4.530161 AGATGCCATCTAGATCACTAACCC 59.470 45.833 5.13 0.00 38.00 4.11
358 359 2.628178 TGCCATCTAGATCACTAACCCG 59.372 50.000 1.03 0.00 0.00 5.28
359 360 2.891580 GCCATCTAGATCACTAACCCGA 59.108 50.000 1.03 0.00 0.00 5.14
360 361 3.511934 GCCATCTAGATCACTAACCCGAT 59.488 47.826 1.03 0.00 0.00 4.18
361 362 4.619394 GCCATCTAGATCACTAACCCGATG 60.619 50.000 1.03 0.00 32.35 3.84
362 363 4.524714 CCATCTAGATCACTAACCCGATGT 59.475 45.833 1.03 0.00 31.48 3.06
363 364 5.710567 CCATCTAGATCACTAACCCGATGTA 59.289 44.000 1.03 0.00 31.48 2.29
364 365 6.208797 CCATCTAGATCACTAACCCGATGTAA 59.791 42.308 1.03 0.00 31.48 2.41
365 366 6.879276 TCTAGATCACTAACCCGATGTAAG 57.121 41.667 0.00 0.00 0.00 2.34
366 367 6.598503 TCTAGATCACTAACCCGATGTAAGA 58.401 40.000 0.00 0.00 0.00 2.10
367 368 7.058525 TCTAGATCACTAACCCGATGTAAGAA 58.941 38.462 0.00 0.00 0.00 2.52
368 369 6.540438 AGATCACTAACCCGATGTAAGAAA 57.460 37.500 0.00 0.00 0.00 2.52
369 370 6.338937 AGATCACTAACCCGATGTAAGAAAC 58.661 40.000 0.00 0.00 0.00 2.78
370 371 5.733620 TCACTAACCCGATGTAAGAAACT 57.266 39.130 0.00 0.00 0.00 2.66
371 372 6.839124 TCACTAACCCGATGTAAGAAACTA 57.161 37.500 0.00 0.00 0.00 2.24
372 373 6.860080 TCACTAACCCGATGTAAGAAACTAG 58.140 40.000 0.00 0.00 0.00 2.57
373 374 6.660521 TCACTAACCCGATGTAAGAAACTAGA 59.339 38.462 0.00 0.00 0.00 2.43
374 375 7.341256 TCACTAACCCGATGTAAGAAACTAGAT 59.659 37.037 0.00 0.00 0.00 1.98
375 376 7.648510 CACTAACCCGATGTAAGAAACTAGATC 59.351 40.741 0.00 0.00 0.00 2.75
376 377 5.184340 ACCCGATGTAAGAAACTAGATCG 57.816 43.478 0.00 0.00 41.98 3.69
377 378 4.885907 ACCCGATGTAAGAAACTAGATCGA 59.114 41.667 10.62 0.00 43.90 3.59
378 379 5.008811 ACCCGATGTAAGAAACTAGATCGAG 59.991 44.000 10.62 0.70 43.90 4.04
379 380 5.008811 CCCGATGTAAGAAACTAGATCGAGT 59.991 44.000 2.18 2.18 43.90 4.18
380 381 5.910166 CCGATGTAAGAAACTAGATCGAGTG 59.090 44.000 9.41 0.00 43.90 3.51
381 382 6.458478 CCGATGTAAGAAACTAGATCGAGTGT 60.458 42.308 9.41 3.51 43.90 3.55
382 383 6.967767 CGATGTAAGAAACTAGATCGAGTGTT 59.032 38.462 9.41 6.24 43.90 3.32
383 384 7.044641 CGATGTAAGAAACTAGATCGAGTGTTG 60.045 40.741 9.41 0.00 43.90 3.33
384 385 7.210718 TGTAAGAAACTAGATCGAGTGTTGA 57.789 36.000 9.41 0.00 0.00 3.18
385 386 7.306213 TGTAAGAAACTAGATCGAGTGTTGAG 58.694 38.462 9.41 0.00 0.00 3.02
386 387 5.317733 AGAAACTAGATCGAGTGTTGAGG 57.682 43.478 9.41 0.00 0.00 3.86
387 388 4.158764 AGAAACTAGATCGAGTGTTGAGGG 59.841 45.833 9.41 0.00 0.00 4.30
388 389 3.088789 ACTAGATCGAGTGTTGAGGGT 57.911 47.619 7.77 0.00 0.00 4.34
389 390 4.232188 ACTAGATCGAGTGTTGAGGGTA 57.768 45.455 7.77 0.00 0.00 3.69
390 391 4.597004 ACTAGATCGAGTGTTGAGGGTAA 58.403 43.478 7.77 0.00 0.00 2.85
391 392 3.870633 AGATCGAGTGTTGAGGGTAAC 57.129 47.619 0.00 0.00 0.00 2.50
405 406 0.179127 GGTAACCCTAACTCCGTCGC 60.179 60.000 0.00 0.00 0.00 5.19
406 407 0.527565 GTAACCCTAACTCCGTCGCA 59.472 55.000 0.00 0.00 0.00 5.10
407 408 0.527565 TAACCCTAACTCCGTCGCAC 59.472 55.000 0.00 0.00 0.00 5.34
408 409 2.163601 AACCCTAACTCCGTCGCACC 62.164 60.000 0.00 0.00 0.00 5.01
409 410 2.183555 CCTAACTCCGTCGCACCC 59.816 66.667 0.00 0.00 0.00 4.61
410 411 2.183555 CTAACTCCGTCGCACCCC 59.816 66.667 0.00 0.00 0.00 4.95
411 412 2.601067 TAACTCCGTCGCACCCCA 60.601 61.111 0.00 0.00 0.00 4.96
412 413 2.558554 CTAACTCCGTCGCACCCCAG 62.559 65.000 0.00 0.00 0.00 4.45
426 427 3.813724 CCAGGGCCTGGCTAAGGG 61.814 72.222 38.22 14.78 45.13 3.95
433 434 4.864334 CTGGCTAAGGGCGGGCAG 62.864 72.222 3.27 0.00 46.47 4.85
443 444 2.659897 GCGGGCAGCGATACAGAG 60.660 66.667 0.00 0.00 35.41 3.35
444 445 3.120105 CGGGCAGCGATACAGAGA 58.880 61.111 0.00 0.00 0.00 3.10
445 446 1.662608 CGGGCAGCGATACAGAGAT 59.337 57.895 0.00 0.00 0.00 2.75
446 447 0.387878 CGGGCAGCGATACAGAGATC 60.388 60.000 0.00 0.00 0.00 2.75
452 453 2.647356 CGATACAGAGATCGCCCCT 58.353 57.895 0.00 0.00 41.98 4.79
453 454 0.962489 CGATACAGAGATCGCCCCTT 59.038 55.000 0.00 0.00 41.98 3.95
454 455 1.336332 CGATACAGAGATCGCCCCTTG 60.336 57.143 0.00 0.00 41.98 3.61
455 456 1.001406 GATACAGAGATCGCCCCTTGG 59.999 57.143 0.00 0.00 0.00 3.61
456 457 0.325296 TACAGAGATCGCCCCTTGGT 60.325 55.000 0.00 0.00 0.00 3.67
457 458 1.144936 CAGAGATCGCCCCTTGGTC 59.855 63.158 0.00 0.00 0.00 4.02
458 459 2.107141 GAGATCGCCCCTTGGTCG 59.893 66.667 0.00 0.00 34.01 4.79
459 460 4.162690 AGATCGCCCCTTGGTCGC 62.163 66.667 0.00 0.00 33.14 5.19
460 461 4.162690 GATCGCCCCTTGGTCGCT 62.163 66.667 0.00 0.00 33.14 4.93
461 462 4.162690 ATCGCCCCTTGGTCGCTC 62.163 66.667 0.00 0.00 33.14 5.03
464 465 3.706373 GCCCCTTGGTCGCTCTGA 61.706 66.667 0.00 0.00 0.00 3.27
465 466 3.068881 CCCCTTGGTCGCTCTGAA 58.931 61.111 0.00 0.00 0.00 3.02
466 467 1.376037 CCCCTTGGTCGCTCTGAAC 60.376 63.158 0.00 0.00 33.68 3.18
467 468 1.376037 CCCTTGGTCGCTCTGAACC 60.376 63.158 0.00 0.00 31.20 3.62
468 469 1.738099 CCTTGGTCGCTCTGAACCG 60.738 63.158 0.00 0.00 31.20 4.44
469 470 1.738099 CTTGGTCGCTCTGAACCGG 60.738 63.158 0.00 0.00 31.20 5.28
470 471 3.234630 TTGGTCGCTCTGAACCGGG 62.235 63.158 6.32 0.00 31.20 5.73
472 473 4.373116 GTCGCTCTGAACCGGGCA 62.373 66.667 6.32 2.13 0.00 5.36
473 474 3.621805 TCGCTCTGAACCGGGCAA 61.622 61.111 6.32 0.00 0.00 4.52
474 475 3.423154 CGCTCTGAACCGGGCAAC 61.423 66.667 6.32 0.00 0.00 4.17
475 476 2.281484 GCTCTGAACCGGGCAACA 60.281 61.111 6.32 0.00 39.74 3.33
476 477 2.328099 GCTCTGAACCGGGCAACAG 61.328 63.158 6.32 9.63 39.74 3.16
484 485 3.642503 CGGGCAACAGGGTGGGTA 61.643 66.667 0.00 0.00 39.74 3.69
485 486 2.848032 GGGCAACAGGGTGGGTAA 59.152 61.111 0.00 0.00 39.74 2.85
486 487 1.386550 GGGCAACAGGGTGGGTAAT 59.613 57.895 0.00 0.00 39.74 1.89
487 488 0.683179 GGGCAACAGGGTGGGTAATC 60.683 60.000 0.00 0.00 39.74 1.75
488 489 1.029947 GGCAACAGGGTGGGTAATCG 61.030 60.000 0.00 0.00 0.00 3.34
489 490 1.029947 GCAACAGGGTGGGTAATCGG 61.030 60.000 0.00 0.00 0.00 4.18
490 491 1.029947 CAACAGGGTGGGTAATCGGC 61.030 60.000 0.00 0.00 0.00 5.54
491 492 2.203015 CAGGGTGGGTAATCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
492 493 3.476419 AGGGTGGGTAATCGGCGG 61.476 66.667 7.21 0.00 0.00 6.13
494 495 4.476752 GGTGGGTAATCGGCGGCA 62.477 66.667 10.53 0.00 0.00 5.69
495 496 2.895372 GTGGGTAATCGGCGGCAG 60.895 66.667 10.53 0.00 0.00 4.85
496 497 4.169696 TGGGTAATCGGCGGCAGG 62.170 66.667 10.53 0.00 0.00 4.85
497 498 4.929707 GGGTAATCGGCGGCAGGG 62.930 72.222 10.53 0.00 0.00 4.45
498 499 4.929707 GGTAATCGGCGGCAGGGG 62.930 72.222 10.53 0.00 0.00 4.79
499 500 3.857038 GTAATCGGCGGCAGGGGA 61.857 66.667 10.53 0.00 0.00 4.81
500 501 3.546543 TAATCGGCGGCAGGGGAG 61.547 66.667 10.53 0.00 0.00 4.30
507 508 2.747855 CGGCAGGGGAGCAAAGTC 60.748 66.667 0.00 0.00 35.83 3.01
508 509 2.759795 GGCAGGGGAGCAAAGTCT 59.240 61.111 0.00 0.00 35.83 3.24
509 510 1.377856 GGCAGGGGAGCAAAGTCTC 60.378 63.158 0.00 0.00 35.83 3.36
510 511 1.743252 GCAGGGGAGCAAAGTCTCG 60.743 63.158 0.00 0.00 33.98 4.04
511 512 1.975327 CAGGGGAGCAAAGTCTCGA 59.025 57.895 0.00 0.00 33.98 4.04
512 513 0.390472 CAGGGGAGCAAAGTCTCGAC 60.390 60.000 0.00 0.00 33.98 4.20
513 514 1.446272 GGGGAGCAAAGTCTCGACG 60.446 63.158 0.00 0.00 36.20 5.12
514 515 1.446272 GGGAGCAAAGTCTCGACGG 60.446 63.158 0.00 0.00 36.20 4.79
515 516 1.289380 GGAGCAAAGTCTCGACGGT 59.711 57.895 0.00 0.00 36.20 4.83
516 517 1.009389 GGAGCAAAGTCTCGACGGTG 61.009 60.000 0.00 0.00 36.20 4.94
517 518 1.006102 AGCAAAGTCTCGACGGTGG 60.006 57.895 0.00 0.00 36.20 4.61
518 519 2.668280 GCAAAGTCTCGACGGTGGC 61.668 63.158 0.00 0.00 36.20 5.01
519 520 2.049433 AAAGTCTCGACGGTGGCG 60.049 61.111 0.00 0.00 36.20 5.69
520 521 2.558286 AAAGTCTCGACGGTGGCGA 61.558 57.895 0.00 0.00 36.20 5.54
521 522 2.079020 AAAGTCTCGACGGTGGCGAA 62.079 55.000 0.00 0.00 37.32 4.70
522 523 2.049802 GTCTCGACGGTGGCGAAA 60.050 61.111 0.00 0.00 37.32 3.46
523 524 1.445582 GTCTCGACGGTGGCGAAAT 60.446 57.895 0.00 0.00 37.32 2.17
524 525 1.153901 TCTCGACGGTGGCGAAATC 60.154 57.895 0.00 0.00 37.32 2.17
525 526 2.505337 TCGACGGTGGCGAAATCG 60.505 61.111 0.00 0.00 43.27 3.34
535 536 3.845259 CGAAATCGCCCCGGGAGA 61.845 66.667 26.32 21.75 35.71 3.71
536 537 2.587889 GAAATCGCCCCGGGAGAA 59.412 61.111 26.32 6.59 34.75 2.87
537 538 1.523938 GAAATCGCCCCGGGAGAAG 60.524 63.158 26.32 5.97 34.75 2.85
538 539 1.968050 GAAATCGCCCCGGGAGAAGA 61.968 60.000 26.32 15.76 34.75 2.87
539 540 1.559065 AAATCGCCCCGGGAGAAGAA 61.559 55.000 26.32 0.56 34.75 2.52
540 541 1.559065 AATCGCCCCGGGAGAAGAAA 61.559 55.000 26.32 0.00 34.75 2.52
541 542 1.972660 ATCGCCCCGGGAGAAGAAAG 61.973 60.000 26.32 2.75 34.75 2.62
542 543 2.656069 CGCCCCGGGAGAAGAAAGA 61.656 63.158 26.32 0.00 0.00 2.52
543 544 1.683441 GCCCCGGGAGAAGAAAGAA 59.317 57.895 26.32 0.00 0.00 2.52
544 545 0.037734 GCCCCGGGAGAAGAAAGAAA 59.962 55.000 26.32 0.00 0.00 2.52
545 546 1.822506 CCCCGGGAGAAGAAAGAAAC 58.177 55.000 26.32 0.00 0.00 2.78
546 547 1.073284 CCCCGGGAGAAGAAAGAAACA 59.927 52.381 26.32 0.00 0.00 2.83
547 548 2.152016 CCCGGGAGAAGAAAGAAACAC 58.848 52.381 18.48 0.00 0.00 3.32
548 549 2.224548 CCCGGGAGAAGAAAGAAACACT 60.225 50.000 18.48 0.00 0.00 3.55
549 550 3.007614 CCCGGGAGAAGAAAGAAACACTA 59.992 47.826 18.48 0.00 0.00 2.74
550 551 4.323562 CCCGGGAGAAGAAAGAAACACTAT 60.324 45.833 18.48 0.00 0.00 2.12
551 552 4.870991 CCGGGAGAAGAAAGAAACACTATC 59.129 45.833 0.00 0.00 0.00 2.08
552 553 4.563184 CGGGAGAAGAAAGAAACACTATCG 59.437 45.833 0.00 0.00 0.00 2.92
553 554 5.621555 CGGGAGAAGAAAGAAACACTATCGA 60.622 44.000 0.00 0.00 0.00 3.59
554 555 6.164176 GGGAGAAGAAAGAAACACTATCGAA 58.836 40.000 0.00 0.00 0.00 3.71
555 556 6.649557 GGGAGAAGAAAGAAACACTATCGAAA 59.350 38.462 0.00 0.00 0.00 3.46
556 557 7.148557 GGGAGAAGAAAGAAACACTATCGAAAG 60.149 40.741 0.00 0.00 0.00 2.62
557 558 7.148557 GGAGAAGAAAGAAACACTATCGAAAGG 60.149 40.741 0.00 0.00 0.00 3.11
558 559 6.651225 AGAAGAAAGAAACACTATCGAAAGGG 59.349 38.462 0.00 0.00 0.00 3.95
559 560 5.246307 AGAAAGAAACACTATCGAAAGGGG 58.754 41.667 0.00 0.00 0.00 4.79
560 561 4.903045 AAGAAACACTATCGAAAGGGGA 57.097 40.909 0.00 0.00 0.00 4.81
561 562 4.473477 AGAAACACTATCGAAAGGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
562 563 3.838903 AGAAACACTATCGAAAGGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
563 564 4.286291 AGAAACACTATCGAAAGGGGAGTT 59.714 41.667 0.00 0.00 0.00 3.01
564 565 4.635699 AACACTATCGAAAGGGGAGTTT 57.364 40.909 0.00 0.00 0.00 2.66
565 566 4.635699 ACACTATCGAAAGGGGAGTTTT 57.364 40.909 0.00 0.00 0.00 2.43
566 567 4.981812 ACACTATCGAAAGGGGAGTTTTT 58.018 39.130 0.00 0.00 0.00 1.94
590 591 8.850454 TTTTGTTGAGAGGAAATTACTTTTCG 57.150 30.769 0.00 0.00 43.95 3.46
627 629 0.396974 ACCAGCCCAAAGAACAAGCA 60.397 50.000 0.00 0.00 0.00 3.91
628 630 0.971386 CCAGCCCAAAGAACAAGCAT 59.029 50.000 0.00 0.00 0.00 3.79
655 657 1.079127 CAGCCCGTTAGTCCACAGG 60.079 63.158 0.00 0.00 0.00 4.00
656 658 2.267961 GCCCGTTAGTCCACAGGG 59.732 66.667 0.00 0.00 44.72 4.45
861 867 4.581093 GCCCGGTAAGCATCCCCC 62.581 72.222 0.00 0.00 0.00 5.40
903 924 3.561213 CGCACTCTCGCTGCCATG 61.561 66.667 0.00 0.00 0.00 3.66
904 925 3.873883 GCACTCTCGCTGCCATGC 61.874 66.667 0.00 0.00 0.00 4.06
905 926 3.200593 CACTCTCGCTGCCATGCC 61.201 66.667 0.00 0.00 0.00 4.40
906 927 4.827087 ACTCTCGCTGCCATGCCG 62.827 66.667 0.00 0.00 0.00 5.69
960 981 6.156519 GGGTTAATGTTTCTGATTTGTGTCC 58.843 40.000 0.00 0.00 0.00 4.02
990 1011 0.615850 GTGTCAGGGGAAAGGAGGAG 59.384 60.000 0.00 0.00 0.00 3.69
1125 1146 0.179065 ACGCCTATTTAACGCCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
1126 1147 0.179067 CGCCTATTTAACGCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1127 1148 1.306148 GCCTATTTAACGCCCCTCAC 58.694 55.000 0.00 0.00 0.00 3.51
1128 1149 1.963172 CCTATTTAACGCCCCTCACC 58.037 55.000 0.00 0.00 0.00 4.02
1129 1150 1.489230 CCTATTTAACGCCCCTCACCT 59.511 52.381 0.00 0.00 0.00 4.00
1130 1151 2.561569 CTATTTAACGCCCCTCACCTG 58.438 52.381 0.00 0.00 0.00 4.00
1131 1152 0.034477 ATTTAACGCCCCTCACCTGG 60.034 55.000 0.00 0.00 0.00 4.45
1132 1153 1.128809 TTTAACGCCCCTCACCTGGA 61.129 55.000 0.00 0.00 0.00 3.86
1212 1233 2.183478 TGTGACGAACTGATGGCAAT 57.817 45.000 0.00 0.00 0.00 3.56
1377 1399 1.471829 TTCTTCCTGGCGCTGTCTCA 61.472 55.000 7.64 0.00 0.00 3.27
1570 1592 5.858381 TGTGGAGATCATAAAGAGGTATGC 58.142 41.667 0.00 0.00 32.45 3.14
1828 1850 3.544698 TCCTGGGATGGTATCTAGACC 57.455 52.381 0.00 0.00 40.21 3.85
1970 2083 4.265073 GTGAATGCTTGGGTTCTACATCT 58.735 43.478 0.00 0.00 0.00 2.90
2285 2401 5.766150 TTTATGCTGGCAATGGTGTATAC 57.234 39.130 0.00 0.00 0.00 1.47
2620 2738 6.572519 TGGCATCTATAGAAAAATTTGTGCC 58.427 36.000 23.75 23.75 46.34 5.01
2952 3070 4.066710 GCTTTTGCGATATATCCGTTCC 57.933 45.455 7.15 0.00 34.86 3.62
2953 3071 3.496884 GCTTTTGCGATATATCCGTTCCA 59.503 43.478 7.15 0.00 34.86 3.53
3436 3556 4.016444 GCTCCACCCATTGATTTACTTCA 58.984 43.478 0.00 0.00 0.00 3.02
3696 3819 6.619801 AGGTTTCACACTGTATTTGACTTC 57.380 37.500 0.00 0.00 0.00 3.01
4529 4654 3.196469 CAGCTCTACACCCAGATCAGAAA 59.804 47.826 0.00 0.00 0.00 2.52
4568 4693 7.404985 CAGTTCACTAGCATAGCATAAACAAG 58.595 38.462 0.00 0.00 44.39 3.16
4619 4745 3.764885 ACAGTGCAGTGAGAACAAAAC 57.235 42.857 28.02 0.00 0.00 2.43
4621 4747 3.375299 ACAGTGCAGTGAGAACAAAACTC 59.625 43.478 28.02 0.00 35.26 3.01
4640 4766 8.548721 CAAAACTCGAGTGTTCTAACTGTATTT 58.451 33.333 20.85 7.98 0.00 1.40
4642 4768 9.754382 AAACTCGAGTGTTCTAACTGTATTTTA 57.246 29.630 20.85 0.00 0.00 1.52
4796 4923 5.824097 CAGAATCATGACATACAATGGTCCA 59.176 40.000 0.00 0.00 33.09 4.02
4822 4950 8.621532 TGCTCAAGAGAAAATATGTACACTTT 57.378 30.769 0.00 0.00 0.00 2.66
4832 4960 6.422776 AATATGTACACTTTACTGCACAGC 57.577 37.500 0.00 0.00 0.00 4.40
4867 4995 2.173669 CCACTATCGTTGCAGCCCG 61.174 63.158 0.00 0.00 0.00 6.13
4943 5071 7.199078 GCTCAACTGAAATGAAGAAAAACTCT 58.801 34.615 0.00 0.00 35.13 3.24
5033 5167 6.386654 ACAAAGAAGAAAAGAAAAGAACGCA 58.613 32.000 0.00 0.00 0.00 5.24
5088 5222 8.339714 CAAAATGTTGAACTTTTGATGCAATCT 58.660 29.630 19.10 0.00 42.31 2.40
5100 5234 1.198713 TGCAATCTCACTCCCTCCTC 58.801 55.000 0.00 0.00 0.00 3.71
5172 5306 3.119029 CCTGCAATTTTGAACCATCCGAT 60.119 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.029483 TCTGAGGAGATGCAGTGATCT 57.971 47.619 0.00 0.00 35.27 2.75
4 5 3.260740 GAACTTCTGAGGAGATGCAGTG 58.739 50.000 0.00 0.00 33.90 3.66
13 14 1.909302 GGTCCATGGAACTTCTGAGGA 59.091 52.381 23.24 0.00 0.00 3.71
18 19 3.875369 GCAAGATGGTCCATGGAACTTCT 60.875 47.826 32.51 32.51 44.72 2.85
22 23 1.838112 TGCAAGATGGTCCATGGAAC 58.162 50.000 23.74 23.74 0.00 3.62
28 29 0.034186 GGGTCATGCAAGATGGTCCA 60.034 55.000 0.00 0.00 0.00 4.02
37 38 1.002069 ATTGGGAGAGGGTCATGCAA 58.998 50.000 0.00 0.00 0.00 4.08
67 68 6.865834 AATCTCTACACTGTCCAATTCTCT 57.134 37.500 0.00 0.00 0.00 3.10
76 77 6.209788 CCTTAGGGGATAATCTCTACACTGTC 59.790 46.154 0.00 0.00 37.23 3.51
95 96 6.101650 AGAAGCAAAATTCAAACCCTTAGG 57.898 37.500 0.00 0.00 40.04 2.69
100 101 3.059665 CGCAAGAAGCAAAATTCAAACCC 60.060 43.478 0.00 0.00 46.13 4.11
103 104 3.456280 AGCGCAAGAAGCAAAATTCAAA 58.544 36.364 11.47 0.00 46.13 2.69
104 105 3.096489 AGCGCAAGAAGCAAAATTCAA 57.904 38.095 11.47 0.00 46.13 2.69
105 106 2.798976 AGCGCAAGAAGCAAAATTCA 57.201 40.000 11.47 0.00 46.13 2.57
109 110 2.095263 GGACATAGCGCAAGAAGCAAAA 60.095 45.455 11.47 0.00 46.13 2.44
114 115 1.737838 TTGGGACATAGCGCAAGAAG 58.262 50.000 11.47 0.00 39.30 2.85
118 119 3.903783 GCTTGGGACATAGCGCAA 58.096 55.556 11.47 0.00 39.30 4.85
124 125 2.499205 CGCTCCGCTTGGGACATA 59.501 61.111 0.00 0.00 40.94 2.29
136 137 3.003378 GGTTTTACAGGAATATGCGCTCC 59.997 47.826 9.73 7.21 0.00 4.70
139 140 3.691498 GTGGTTTTACAGGAATATGCGC 58.309 45.455 0.00 0.00 0.00 6.09
141 142 4.957759 ACGTGGTTTTACAGGAATATGC 57.042 40.909 0.00 0.00 0.00 3.14
145 146 4.577834 CCAAACGTGGTTTTACAGGAAT 57.422 40.909 0.00 0.00 40.42 3.01
160 161 1.878953 ACAAGACCTACAGCCAAACG 58.121 50.000 0.00 0.00 0.00 3.60
161 162 2.293399 CCAACAAGACCTACAGCCAAAC 59.707 50.000 0.00 0.00 0.00 2.93
162 163 2.092103 ACCAACAAGACCTACAGCCAAA 60.092 45.455 0.00 0.00 0.00 3.28
163 164 1.493022 ACCAACAAGACCTACAGCCAA 59.507 47.619 0.00 0.00 0.00 4.52
164 165 1.136828 ACCAACAAGACCTACAGCCA 58.863 50.000 0.00 0.00 0.00 4.75
165 166 1.202770 ACACCAACAAGACCTACAGCC 60.203 52.381 0.00 0.00 0.00 4.85
166 167 2.256117 ACACCAACAAGACCTACAGC 57.744 50.000 0.00 0.00 0.00 4.40
167 168 4.514066 GGTTAACACCAACAAGACCTACAG 59.486 45.833 8.10 0.00 43.61 2.74
168 169 4.453751 GGTTAACACCAACAAGACCTACA 58.546 43.478 8.10 0.00 43.61 2.74
169 170 3.817084 GGGTTAACACCAACAAGACCTAC 59.183 47.826 8.10 0.00 46.43 3.18
170 171 3.717913 AGGGTTAACACCAACAAGACCTA 59.282 43.478 3.66 0.00 46.43 3.08
171 172 2.512476 AGGGTTAACACCAACAAGACCT 59.488 45.455 3.66 0.00 46.43 3.85
172 173 2.940158 AGGGTTAACACCAACAAGACC 58.060 47.619 3.66 0.00 46.43 3.85
173 174 3.501062 GCTAGGGTTAACACCAACAAGAC 59.499 47.826 3.66 0.00 46.43 3.01
174 175 3.497227 GGCTAGGGTTAACACCAACAAGA 60.497 47.826 3.66 0.00 46.43 3.02
175 176 2.817844 GGCTAGGGTTAACACCAACAAG 59.182 50.000 3.66 3.20 46.43 3.16
176 177 2.175069 TGGCTAGGGTTAACACCAACAA 59.825 45.455 3.66 0.00 46.43 2.83
177 178 1.775459 TGGCTAGGGTTAACACCAACA 59.225 47.619 3.66 0.00 46.43 3.33
178 179 2.433436 CTGGCTAGGGTTAACACCAAC 58.567 52.381 3.66 0.00 46.43 3.77
179 180 1.271707 GCTGGCTAGGGTTAACACCAA 60.272 52.381 3.66 0.00 46.43 3.67
180 181 0.326927 GCTGGCTAGGGTTAACACCA 59.673 55.000 3.66 4.04 46.43 4.17
181 182 0.743345 CGCTGGCTAGGGTTAACACC 60.743 60.000 3.66 4.63 43.37 4.16
182 183 1.366854 GCGCTGGCTAGGGTTAACAC 61.367 60.000 15.53 3.22 38.97 3.32
183 184 1.078708 GCGCTGGCTAGGGTTAACA 60.079 57.895 15.53 0.00 38.97 2.41
184 185 2.171725 CGCGCTGGCTAGGGTTAAC 61.172 63.158 15.53 0.00 38.97 2.01
185 186 1.682451 ATCGCGCTGGCTAGGGTTAA 61.682 55.000 15.53 2.29 38.97 2.01
186 187 2.083835 GATCGCGCTGGCTAGGGTTA 62.084 60.000 15.53 4.68 38.97 2.85
187 188 3.447025 GATCGCGCTGGCTAGGGTT 62.447 63.158 15.53 1.42 38.97 4.11
188 189 3.917760 GATCGCGCTGGCTAGGGT 61.918 66.667 15.53 0.00 38.97 4.34
189 190 4.671569 GGATCGCGCTGGCTAGGG 62.672 72.222 9.97 9.97 39.68 3.53
190 191 3.231889 ATGGATCGCGCTGGCTAGG 62.232 63.158 5.56 0.00 36.88 3.02
191 192 1.735920 GATGGATCGCGCTGGCTAG 60.736 63.158 5.56 0.00 36.88 3.42
192 193 0.893727 TAGATGGATCGCGCTGGCTA 60.894 55.000 5.56 0.00 36.88 3.93
193 194 2.152297 CTAGATGGATCGCGCTGGCT 62.152 60.000 5.56 0.00 36.88 4.75
194 195 1.735920 CTAGATGGATCGCGCTGGC 60.736 63.158 5.56 0.00 0.00 4.85
195 196 1.080230 CCTAGATGGATCGCGCTGG 60.080 63.158 5.56 0.00 38.35 4.85
196 197 1.735920 GCCTAGATGGATCGCGCTG 60.736 63.158 5.56 0.00 38.35 5.18
197 198 2.653702 GCCTAGATGGATCGCGCT 59.346 61.111 5.56 0.00 38.35 5.92
198 199 2.807045 CGCCTAGATGGATCGCGC 60.807 66.667 0.00 0.00 38.35 6.86
199 200 2.807045 GCGCCTAGATGGATCGCG 60.807 66.667 0.00 0.00 45.35 5.87
200 201 2.433318 GGCGCCTAGATGGATCGC 60.433 66.667 22.15 0.00 43.45 4.58
201 202 1.214062 GAGGCGCCTAGATGGATCG 59.786 63.158 32.97 0.00 38.35 3.69
202 203 1.594310 GGAGGCGCCTAGATGGATC 59.406 63.158 32.97 14.76 38.35 3.36
203 204 2.279069 CGGAGGCGCCTAGATGGAT 61.279 63.158 32.97 4.00 38.35 3.41
204 205 2.912542 CGGAGGCGCCTAGATGGA 60.913 66.667 32.97 0.00 38.35 3.41
205 206 3.996124 CCGGAGGCGCCTAGATGG 61.996 72.222 32.97 23.89 46.14 3.51
222 223 4.117661 ACGAGAAGGAGGCGTCGC 62.118 66.667 9.22 9.22 35.83 5.19
223 224 2.100603 GACGAGAAGGAGGCGTCG 59.899 66.667 0.00 0.00 43.76 5.12
225 226 0.038159 CTTTGACGAGAAGGAGGCGT 60.038 55.000 0.00 0.00 41.45 5.68
226 227 0.243907 TCTTTGACGAGAAGGAGGCG 59.756 55.000 0.00 0.00 0.00 5.52
227 228 2.275318 CATCTTTGACGAGAAGGAGGC 58.725 52.381 0.00 0.00 0.00 4.70
228 229 2.898705 CCATCTTTGACGAGAAGGAGG 58.101 52.381 0.00 0.00 36.80 4.30
229 230 2.275318 GCCATCTTTGACGAGAAGGAG 58.725 52.381 0.00 0.00 36.80 3.69
230 231 1.404181 CGCCATCTTTGACGAGAAGGA 60.404 52.381 0.00 0.00 36.80 3.36
231 232 1.002366 CGCCATCTTTGACGAGAAGG 58.998 55.000 0.00 0.00 37.53 3.46
232 233 1.656095 GACGCCATCTTTGACGAGAAG 59.344 52.381 0.00 0.00 0.00 2.85
233 234 1.000394 TGACGCCATCTTTGACGAGAA 60.000 47.619 0.00 0.00 0.00 2.87
234 235 0.601057 TGACGCCATCTTTGACGAGA 59.399 50.000 0.00 0.00 0.00 4.04
235 236 1.590238 GATGACGCCATCTTTGACGAG 59.410 52.381 4.25 0.00 44.42 4.18
236 237 1.640428 GATGACGCCATCTTTGACGA 58.360 50.000 4.25 0.00 44.42 4.20
237 238 0.298707 CGATGACGCCATCTTTGACG 59.701 55.000 10.11 0.00 45.37 4.35
238 239 1.590238 CTCGATGACGCCATCTTTGAC 59.410 52.381 10.11 0.00 45.37 3.18
239 240 1.471501 CCTCGATGACGCCATCTTTGA 60.472 52.381 10.11 0.00 45.37 2.69
240 241 0.933097 CCTCGATGACGCCATCTTTG 59.067 55.000 10.11 0.15 45.37 2.77
241 242 0.537188 ACCTCGATGACGCCATCTTT 59.463 50.000 10.11 0.00 45.37 2.52
242 243 0.103208 GACCTCGATGACGCCATCTT 59.897 55.000 10.11 0.00 45.37 2.40
243 244 1.736586 GACCTCGATGACGCCATCT 59.263 57.895 10.11 0.00 45.37 2.90
244 245 1.300233 GGACCTCGATGACGCCATC 60.300 63.158 0.99 0.99 44.38 3.51
245 246 1.739338 GAGGACCTCGATGACGCCAT 61.739 60.000 5.55 0.00 39.58 4.40
246 247 2.362503 AGGACCTCGATGACGCCA 60.363 61.111 0.00 0.00 39.58 5.69
247 248 2.413765 GAGGACCTCGATGACGCC 59.586 66.667 5.55 0.00 39.58 5.68
248 249 2.122167 AGGAGGACCTCGATGACGC 61.122 63.158 15.46 0.00 44.13 5.19
249 250 4.244326 AGGAGGACCTCGATGACG 57.756 61.111 15.46 0.00 44.13 4.35
265 266 1.151668 CAGAACTTGGCCTTCGTGAG 58.848 55.000 3.32 0.00 0.00 3.51
266 267 0.884704 GCAGAACTTGGCCTTCGTGA 60.885 55.000 3.32 0.00 0.00 4.35
267 268 1.576421 GCAGAACTTGGCCTTCGTG 59.424 57.895 3.32 1.76 0.00 4.35
268 269 1.600916 GGCAGAACTTGGCCTTCGT 60.601 57.895 3.32 0.00 46.74 3.85
269 270 3.267974 GGCAGAACTTGGCCTTCG 58.732 61.111 3.32 0.00 46.74 3.79
275 276 4.381292 GGAAAAGATGATGGCAGAACTTGG 60.381 45.833 0.00 0.00 0.00 3.61
276 277 4.219070 TGGAAAAGATGATGGCAGAACTTG 59.781 41.667 0.00 0.00 0.00 3.16
277 278 4.219288 GTGGAAAAGATGATGGCAGAACTT 59.781 41.667 0.00 0.00 0.00 2.66
278 279 3.760684 GTGGAAAAGATGATGGCAGAACT 59.239 43.478 0.00 0.00 0.00 3.01
279 280 3.507233 TGTGGAAAAGATGATGGCAGAAC 59.493 43.478 0.00 0.00 0.00 3.01
280 281 3.765381 TGTGGAAAAGATGATGGCAGAA 58.235 40.909 0.00 0.00 0.00 3.02
281 282 3.438216 TGTGGAAAAGATGATGGCAGA 57.562 42.857 0.00 0.00 0.00 4.26
282 283 4.430007 CAATGTGGAAAAGATGATGGCAG 58.570 43.478 0.00 0.00 0.00 4.85
283 284 3.368635 GCAATGTGGAAAAGATGATGGCA 60.369 43.478 0.00 0.00 0.00 4.92
284 285 3.118884 AGCAATGTGGAAAAGATGATGGC 60.119 43.478 0.00 0.00 0.00 4.40
285 286 4.730949 AGCAATGTGGAAAAGATGATGG 57.269 40.909 0.00 0.00 0.00 3.51
286 287 5.747197 GCTTAGCAATGTGGAAAAGATGATG 59.253 40.000 0.00 0.00 0.00 3.07
287 288 5.163478 GGCTTAGCAATGTGGAAAAGATGAT 60.163 40.000 6.53 0.00 0.00 2.45
288 289 4.158394 GGCTTAGCAATGTGGAAAAGATGA 59.842 41.667 6.53 0.00 0.00 2.92
289 290 4.427312 GGCTTAGCAATGTGGAAAAGATG 58.573 43.478 6.53 0.00 0.00 2.90
290 291 3.448660 GGGCTTAGCAATGTGGAAAAGAT 59.551 43.478 6.53 0.00 0.00 2.40
291 292 2.825532 GGGCTTAGCAATGTGGAAAAGA 59.174 45.455 6.53 0.00 0.00 2.52
292 293 2.562298 TGGGCTTAGCAATGTGGAAAAG 59.438 45.455 6.53 0.00 0.00 2.27
293 294 2.562298 CTGGGCTTAGCAATGTGGAAAA 59.438 45.455 6.53 0.00 0.00 2.29
294 295 2.170166 CTGGGCTTAGCAATGTGGAAA 58.830 47.619 6.53 0.00 0.00 3.13
295 296 1.354031 TCTGGGCTTAGCAATGTGGAA 59.646 47.619 6.53 0.00 0.00 3.53
296 297 0.991146 TCTGGGCTTAGCAATGTGGA 59.009 50.000 6.53 0.00 0.00 4.02
297 298 1.386533 CTCTGGGCTTAGCAATGTGG 58.613 55.000 6.53 0.00 0.00 4.17
298 299 1.065199 TCCTCTGGGCTTAGCAATGTG 60.065 52.381 6.53 0.00 0.00 3.21
299 300 1.289160 TCCTCTGGGCTTAGCAATGT 58.711 50.000 6.53 0.00 0.00 2.71
300 301 2.019984 GTTCCTCTGGGCTTAGCAATG 58.980 52.381 6.53 0.00 0.00 2.82
301 302 1.064389 GGTTCCTCTGGGCTTAGCAAT 60.064 52.381 6.53 0.00 0.00 3.56
302 303 0.328258 GGTTCCTCTGGGCTTAGCAA 59.672 55.000 6.53 0.00 0.00 3.91
303 304 1.562672 GGGTTCCTCTGGGCTTAGCA 61.563 60.000 6.53 0.00 0.00 3.49
304 305 1.224870 GGGTTCCTCTGGGCTTAGC 59.775 63.158 0.00 0.00 0.00 3.09
305 306 0.976073 TCGGGTTCCTCTGGGCTTAG 60.976 60.000 0.00 0.00 0.00 2.18
306 307 0.545787 TTCGGGTTCCTCTGGGCTTA 60.546 55.000 0.00 0.00 0.00 3.09
307 308 1.842381 CTTCGGGTTCCTCTGGGCTT 61.842 60.000 0.00 0.00 0.00 4.35
308 309 2.203938 TTCGGGTTCCTCTGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
309 310 2.269241 CTTCGGGTTCCTCTGGGC 59.731 66.667 0.00 0.00 0.00 5.36
310 311 2.245438 GAGCTTCGGGTTCCTCTGGG 62.245 65.000 0.00 0.00 0.00 4.45
311 312 1.219393 GAGCTTCGGGTTCCTCTGG 59.781 63.158 0.00 0.00 0.00 3.86
312 313 1.219393 GGAGCTTCGGGTTCCTCTG 59.781 63.158 0.00 0.00 41.36 3.35
313 314 0.618968 ATGGAGCTTCGGGTTCCTCT 60.619 55.000 11.70 0.39 44.34 3.69
314 315 0.179070 GATGGAGCTTCGGGTTCCTC 60.179 60.000 11.70 5.44 44.34 3.71
315 316 0.909610 TGATGGAGCTTCGGGTTCCT 60.910 55.000 11.70 1.06 44.34 3.36
316 317 0.462759 CTGATGGAGCTTCGGGTTCC 60.463 60.000 0.00 5.54 44.29 3.62
317 318 0.537188 TCTGATGGAGCTTCGGGTTC 59.463 55.000 0.00 0.00 0.00 3.62
318 319 1.134280 CATCTGATGGAGCTTCGGGTT 60.134 52.381 9.82 0.00 0.00 4.11
319 320 0.467384 CATCTGATGGAGCTTCGGGT 59.533 55.000 9.82 0.00 0.00 5.28
320 321 0.883814 GCATCTGATGGAGCTTCGGG 60.884 60.000 18.60 0.00 0.00 5.14
321 322 0.883814 GGCATCTGATGGAGCTTCGG 60.884 60.000 18.60 0.00 0.00 4.30
322 323 0.179065 TGGCATCTGATGGAGCTTCG 60.179 55.000 18.60 0.00 0.00 3.79
323 324 2.152830 GATGGCATCTGATGGAGCTTC 58.847 52.381 20.08 1.42 0.00 3.86
324 325 1.775459 AGATGGCATCTGATGGAGCTT 59.225 47.619 28.33 0.76 38.44 3.74
325 326 1.436326 AGATGGCATCTGATGGAGCT 58.564 50.000 28.33 1.54 38.44 4.09
326 327 2.566279 TCTAGATGGCATCTGATGGAGC 59.434 50.000 34.43 4.63 40.51 4.70
327 328 4.466726 TGATCTAGATGGCATCTGATGGAG 59.533 45.833 34.43 24.35 40.51 3.86
328 329 4.222366 GTGATCTAGATGGCATCTGATGGA 59.778 45.833 34.43 25.39 40.51 3.41
329 330 4.223255 AGTGATCTAGATGGCATCTGATGG 59.777 45.833 34.43 21.95 40.51 3.51
330 331 5.408880 AGTGATCTAGATGGCATCTGATG 57.591 43.478 34.43 24.12 40.51 3.07
331 332 6.070881 GGTTAGTGATCTAGATGGCATCTGAT 60.071 42.308 34.43 30.37 40.51 2.90
332 333 5.244851 GGTTAGTGATCTAGATGGCATCTGA 59.755 44.000 34.43 27.85 40.51 3.27
333 334 5.477510 GGTTAGTGATCTAGATGGCATCTG 58.522 45.833 34.43 24.40 40.51 2.90
334 335 4.530161 GGGTTAGTGATCTAGATGGCATCT 59.470 45.833 30.89 30.89 43.33 2.90
335 336 4.619394 CGGGTTAGTGATCTAGATGGCATC 60.619 50.000 19.78 19.78 0.00 3.91
336 337 3.259374 CGGGTTAGTGATCTAGATGGCAT 59.741 47.826 10.74 0.00 0.00 4.40
337 338 2.628178 CGGGTTAGTGATCTAGATGGCA 59.372 50.000 10.74 0.00 0.00 4.92
338 339 2.891580 TCGGGTTAGTGATCTAGATGGC 59.108 50.000 10.74 2.46 0.00 4.40
339 340 4.524714 ACATCGGGTTAGTGATCTAGATGG 59.475 45.833 10.74 0.00 38.68 3.51
340 341 5.713792 ACATCGGGTTAGTGATCTAGATG 57.286 43.478 10.74 0.00 39.81 2.90
341 342 7.232188 TCTTACATCGGGTTAGTGATCTAGAT 58.768 38.462 4.47 4.47 0.00 1.98
342 343 6.598503 TCTTACATCGGGTTAGTGATCTAGA 58.401 40.000 0.00 0.00 0.00 2.43
343 344 6.879276 TCTTACATCGGGTTAGTGATCTAG 57.121 41.667 0.00 0.00 0.00 2.43
344 345 7.341256 AGTTTCTTACATCGGGTTAGTGATCTA 59.659 37.037 0.00 0.00 0.00 1.98
345 346 6.154706 AGTTTCTTACATCGGGTTAGTGATCT 59.845 38.462 0.00 0.00 0.00 2.75
346 347 6.338937 AGTTTCTTACATCGGGTTAGTGATC 58.661 40.000 0.00 0.00 0.00 2.92
347 348 6.295719 AGTTTCTTACATCGGGTTAGTGAT 57.704 37.500 0.00 0.00 0.00 3.06
348 349 5.733620 AGTTTCTTACATCGGGTTAGTGA 57.266 39.130 0.00 0.00 0.00 3.41
349 350 6.860080 TCTAGTTTCTTACATCGGGTTAGTG 58.140 40.000 0.00 0.00 0.00 2.74
350 351 7.468357 CGATCTAGTTTCTTACATCGGGTTAGT 60.468 40.741 0.00 0.00 30.66 2.24
351 352 6.856938 CGATCTAGTTTCTTACATCGGGTTAG 59.143 42.308 0.00 0.00 30.66 2.34
352 353 6.543465 TCGATCTAGTTTCTTACATCGGGTTA 59.457 38.462 6.41 0.00 33.43 2.85
353 354 5.359009 TCGATCTAGTTTCTTACATCGGGTT 59.641 40.000 6.41 0.00 33.43 4.11
354 355 4.885907 TCGATCTAGTTTCTTACATCGGGT 59.114 41.667 6.41 0.00 33.43 5.28
355 356 5.008811 ACTCGATCTAGTTTCTTACATCGGG 59.991 44.000 4.93 4.93 36.95 5.14
356 357 5.910166 CACTCGATCTAGTTTCTTACATCGG 59.090 44.000 0.00 1.78 33.43 4.18
357 358 6.487960 ACACTCGATCTAGTTTCTTACATCG 58.512 40.000 0.00 0.00 33.72 3.84
358 359 7.968956 TCAACACTCGATCTAGTTTCTTACATC 59.031 37.037 0.00 0.00 0.00 3.06
359 360 7.827701 TCAACACTCGATCTAGTTTCTTACAT 58.172 34.615 0.00 0.00 0.00 2.29
360 361 7.210718 TCAACACTCGATCTAGTTTCTTACA 57.789 36.000 0.00 0.00 0.00 2.41
361 362 6.748198 CCTCAACACTCGATCTAGTTTCTTAC 59.252 42.308 0.00 0.00 0.00 2.34
362 363 6.127703 CCCTCAACACTCGATCTAGTTTCTTA 60.128 42.308 0.00 0.00 0.00 2.10
363 364 5.336849 CCCTCAACACTCGATCTAGTTTCTT 60.337 44.000 0.00 0.00 0.00 2.52
364 365 4.158764 CCCTCAACACTCGATCTAGTTTCT 59.841 45.833 0.00 0.00 0.00 2.52
365 366 4.082136 ACCCTCAACACTCGATCTAGTTTC 60.082 45.833 0.00 0.00 0.00 2.78
366 367 3.833070 ACCCTCAACACTCGATCTAGTTT 59.167 43.478 0.00 0.00 0.00 2.66
367 368 3.432378 ACCCTCAACACTCGATCTAGTT 58.568 45.455 0.00 0.00 0.00 2.24
368 369 3.088789 ACCCTCAACACTCGATCTAGT 57.911 47.619 0.00 0.00 0.00 2.57
369 370 4.202030 GGTTACCCTCAACACTCGATCTAG 60.202 50.000 0.00 0.00 0.00 2.43
370 371 3.698040 GGTTACCCTCAACACTCGATCTA 59.302 47.826 0.00 0.00 0.00 1.98
371 372 2.496470 GGTTACCCTCAACACTCGATCT 59.504 50.000 0.00 0.00 0.00 2.75
372 373 2.418334 GGGTTACCCTCAACACTCGATC 60.418 54.545 14.22 0.00 41.34 3.69
373 374 1.553704 GGGTTACCCTCAACACTCGAT 59.446 52.381 14.22 0.00 41.34 3.59
374 375 0.971386 GGGTTACCCTCAACACTCGA 59.029 55.000 14.22 0.00 41.34 4.04
375 376 3.527434 GGGTTACCCTCAACACTCG 57.473 57.895 14.22 0.00 41.34 4.18
410 411 4.512914 GCCCTTAGCCAGGCCCTG 62.513 72.222 8.22 2.91 43.76 4.45
416 417 4.864334 CTGCCCGCCCTTAGCCAG 62.864 72.222 0.00 0.00 38.78 4.85
420 421 2.867855 TATCGCTGCCCGCCCTTAG 61.868 63.158 0.00 0.00 36.73 2.18
421 422 2.840572 TATCGCTGCCCGCCCTTA 60.841 61.111 0.00 0.00 36.73 2.69
422 423 4.547367 GTATCGCTGCCCGCCCTT 62.547 66.667 0.00 0.00 36.73 3.95
425 426 4.221422 TCTGTATCGCTGCCCGCC 62.221 66.667 0.00 0.00 36.73 6.13
426 427 2.427540 ATCTCTGTATCGCTGCCCGC 62.428 60.000 0.00 0.00 36.73 6.13
427 428 0.387878 GATCTCTGTATCGCTGCCCG 60.388 60.000 0.00 0.00 38.61 6.13
428 429 0.387878 CGATCTCTGTATCGCTGCCC 60.388 60.000 0.00 0.00 41.93 5.36
429 430 3.099524 CGATCTCTGTATCGCTGCC 57.900 57.895 0.00 0.00 41.93 4.85
435 436 1.001406 CCAAGGGGCGATCTCTGTATC 59.999 57.143 0.00 0.00 0.00 2.24
436 437 1.051812 CCAAGGGGCGATCTCTGTAT 58.948 55.000 0.00 0.00 0.00 2.29
437 438 0.325296 ACCAAGGGGCGATCTCTGTA 60.325 55.000 0.00 0.00 37.90 2.74
438 439 1.613630 ACCAAGGGGCGATCTCTGT 60.614 57.895 0.00 0.00 37.90 3.41
439 440 1.144936 GACCAAGGGGCGATCTCTG 59.855 63.158 0.00 0.00 37.90 3.35
440 441 3.635510 GACCAAGGGGCGATCTCT 58.364 61.111 0.00 0.00 37.90 3.10
447 448 3.254024 TTCAGAGCGACCAAGGGGC 62.254 63.158 0.00 0.00 37.90 5.80
448 449 1.376037 GTTCAGAGCGACCAAGGGG 60.376 63.158 0.00 0.00 41.29 4.79
449 450 1.376037 GGTTCAGAGCGACCAAGGG 60.376 63.158 0.00 0.00 35.95 3.95
450 451 4.285851 GGTTCAGAGCGACCAAGG 57.714 61.111 0.00 0.00 35.95 3.61
457 458 3.423154 GTTGCCCGGTTCAGAGCG 61.423 66.667 0.00 0.00 45.81 5.03
458 459 2.281484 TGTTGCCCGGTTCAGAGC 60.281 61.111 0.00 0.00 0.00 4.09
459 460 1.672356 CCTGTTGCCCGGTTCAGAG 60.672 63.158 0.00 0.00 0.00 3.35
460 461 2.429930 CCTGTTGCCCGGTTCAGA 59.570 61.111 0.00 0.00 0.00 3.27
461 462 2.672996 CCCTGTTGCCCGGTTCAG 60.673 66.667 0.00 3.13 0.00 3.02
462 463 3.494254 ACCCTGTTGCCCGGTTCA 61.494 61.111 0.00 0.00 0.00 3.18
463 464 2.983592 CACCCTGTTGCCCGGTTC 60.984 66.667 0.00 0.00 0.00 3.62
464 465 4.596585 CCACCCTGTTGCCCGGTT 62.597 66.667 0.00 0.00 0.00 4.44
467 468 2.493273 ATTACCCACCCTGTTGCCCG 62.493 60.000 0.00 0.00 0.00 6.13
468 469 0.683179 GATTACCCACCCTGTTGCCC 60.683 60.000 0.00 0.00 0.00 5.36
469 470 1.029947 CGATTACCCACCCTGTTGCC 61.030 60.000 0.00 0.00 0.00 4.52
470 471 1.029947 CCGATTACCCACCCTGTTGC 61.030 60.000 0.00 0.00 0.00 4.17
471 472 1.029947 GCCGATTACCCACCCTGTTG 61.030 60.000 0.00 0.00 0.00 3.33
472 473 1.301954 GCCGATTACCCACCCTGTT 59.698 57.895 0.00 0.00 0.00 3.16
473 474 2.995547 GCCGATTACCCACCCTGT 59.004 61.111 0.00 0.00 0.00 4.00
474 475 2.203015 CGCCGATTACCCACCCTG 60.203 66.667 0.00 0.00 0.00 4.45
475 476 3.476419 CCGCCGATTACCCACCCT 61.476 66.667 0.00 0.00 0.00 4.34
477 478 4.476752 TGCCGCCGATTACCCACC 62.477 66.667 0.00 0.00 0.00 4.61
478 479 2.895372 CTGCCGCCGATTACCCAC 60.895 66.667 0.00 0.00 0.00 4.61
479 480 4.169696 CCTGCCGCCGATTACCCA 62.170 66.667 0.00 0.00 0.00 4.51
480 481 4.929707 CCCTGCCGCCGATTACCC 62.930 72.222 0.00 0.00 0.00 3.69
481 482 4.929707 CCCCTGCCGCCGATTACC 62.930 72.222 0.00 0.00 0.00 2.85
482 483 3.809374 CTCCCCTGCCGCCGATTAC 62.809 68.421 0.00 0.00 0.00 1.89
483 484 3.546543 CTCCCCTGCCGCCGATTA 61.547 66.667 0.00 0.00 0.00 1.75
490 491 2.747855 GACTTTGCTCCCCTGCCG 60.748 66.667 0.00 0.00 0.00 5.69
491 492 1.377856 GAGACTTTGCTCCCCTGCC 60.378 63.158 0.00 0.00 0.00 4.85
492 493 1.743252 CGAGACTTTGCTCCCCTGC 60.743 63.158 0.00 0.00 0.00 4.85
493 494 0.390472 GTCGAGACTTTGCTCCCCTG 60.390 60.000 0.00 0.00 0.00 4.45
494 495 1.878656 CGTCGAGACTTTGCTCCCCT 61.879 60.000 1.56 0.00 0.00 4.79
495 496 1.446272 CGTCGAGACTTTGCTCCCC 60.446 63.158 1.56 0.00 0.00 4.81
496 497 1.446272 CCGTCGAGACTTTGCTCCC 60.446 63.158 0.00 0.00 0.00 4.30
497 498 1.009389 CACCGTCGAGACTTTGCTCC 61.009 60.000 0.00 0.00 0.00 4.70
498 499 1.009389 CCACCGTCGAGACTTTGCTC 61.009 60.000 0.00 0.00 0.00 4.26
499 500 1.006102 CCACCGTCGAGACTTTGCT 60.006 57.895 0.00 0.00 0.00 3.91
500 501 2.668280 GCCACCGTCGAGACTTTGC 61.668 63.158 0.00 0.00 0.00 3.68
501 502 2.372690 CGCCACCGTCGAGACTTTG 61.373 63.158 0.00 0.00 0.00 2.77
502 503 2.049433 CGCCACCGTCGAGACTTT 60.049 61.111 0.00 0.00 0.00 2.66
503 504 2.079020 TTTCGCCACCGTCGAGACTT 62.079 55.000 0.00 0.00 37.26 3.01
504 505 1.874345 ATTTCGCCACCGTCGAGACT 61.874 55.000 0.00 0.00 37.26 3.24
505 506 1.411493 GATTTCGCCACCGTCGAGAC 61.411 60.000 0.00 0.00 37.26 3.36
506 507 1.153901 GATTTCGCCACCGTCGAGA 60.154 57.895 0.00 0.00 37.26 4.04
507 508 2.505498 CGATTTCGCCACCGTCGAG 61.505 63.158 0.00 0.00 37.26 4.04
508 509 2.505337 CGATTTCGCCACCGTCGA 60.505 61.111 0.00 0.00 33.88 4.20
518 519 3.379865 TTCTCCCGGGGCGATTTCG 62.380 63.158 23.50 0.00 43.27 3.46
519 520 1.523938 CTTCTCCCGGGGCGATTTC 60.524 63.158 23.50 0.00 0.00 2.17
520 521 1.559065 TTCTTCTCCCGGGGCGATTT 61.559 55.000 23.50 0.00 0.00 2.17
521 522 1.559065 TTTCTTCTCCCGGGGCGATT 61.559 55.000 23.50 0.00 0.00 3.34
522 523 1.972660 CTTTCTTCTCCCGGGGCGAT 61.973 60.000 23.50 0.00 0.00 4.58
523 524 2.605295 TTTCTTCTCCCGGGGCGA 60.605 61.111 23.50 15.25 0.00 5.54
524 525 2.125106 CTTTCTTCTCCCGGGGCG 60.125 66.667 23.50 12.84 0.00 6.13
525 526 0.037734 TTTCTTTCTTCTCCCGGGGC 59.962 55.000 23.50 0.00 0.00 5.80
526 527 1.073284 TGTTTCTTTCTTCTCCCGGGG 59.927 52.381 23.50 12.05 0.00 5.73
527 528 2.152016 GTGTTTCTTTCTTCTCCCGGG 58.848 52.381 16.85 16.85 0.00 5.73
528 529 3.127425 AGTGTTTCTTTCTTCTCCCGG 57.873 47.619 0.00 0.00 0.00 5.73
529 530 4.563184 CGATAGTGTTTCTTTCTTCTCCCG 59.437 45.833 0.00 0.00 0.00 5.14
530 531 5.721232 TCGATAGTGTTTCTTTCTTCTCCC 58.279 41.667 0.00 0.00 37.40 4.30
531 532 7.148557 CCTTTCGATAGTGTTTCTTTCTTCTCC 60.149 40.741 2.13 0.00 37.40 3.71
532 533 7.148557 CCCTTTCGATAGTGTTTCTTTCTTCTC 60.149 40.741 2.13 0.00 37.40 2.87
533 534 6.651225 CCCTTTCGATAGTGTTTCTTTCTTCT 59.349 38.462 2.13 0.00 37.40 2.85
534 535 6.128254 CCCCTTTCGATAGTGTTTCTTTCTTC 60.128 42.308 2.13 0.00 37.40 2.87
535 536 5.705905 CCCCTTTCGATAGTGTTTCTTTCTT 59.294 40.000 2.13 0.00 37.40 2.52
536 537 5.012768 TCCCCTTTCGATAGTGTTTCTTTCT 59.987 40.000 2.13 0.00 37.40 2.52
537 538 5.243207 TCCCCTTTCGATAGTGTTTCTTTC 58.757 41.667 2.13 0.00 37.40 2.62
538 539 5.221864 ACTCCCCTTTCGATAGTGTTTCTTT 60.222 40.000 2.13 0.00 37.40 2.52
539 540 4.286291 ACTCCCCTTTCGATAGTGTTTCTT 59.714 41.667 2.13 0.00 37.40 2.52
540 541 3.838903 ACTCCCCTTTCGATAGTGTTTCT 59.161 43.478 2.13 0.00 37.40 2.52
541 542 4.203654 ACTCCCCTTTCGATAGTGTTTC 57.796 45.455 2.13 0.00 37.40 2.78
542 543 4.635699 AACTCCCCTTTCGATAGTGTTT 57.364 40.909 2.13 0.00 37.40 2.83
543 544 4.635699 AAACTCCCCTTTCGATAGTGTT 57.364 40.909 2.13 0.07 37.40 3.32
544 545 4.635699 AAAACTCCCCTTTCGATAGTGT 57.364 40.909 2.13 0.00 37.40 3.55
564 565 9.296400 CGAAAAGTAATTTCCTCTCAACAAAAA 57.704 29.630 0.00 0.00 43.77 1.94
565 566 8.463607 ACGAAAAGTAATTTCCTCTCAACAAAA 58.536 29.630 0.00 0.00 43.77 2.44
566 567 7.992008 ACGAAAAGTAATTTCCTCTCAACAAA 58.008 30.769 0.00 0.00 43.77 2.83
590 591 4.117685 CTGGTTTTATGTAGGCCTACGAC 58.882 47.826 32.52 24.06 38.85 4.34
861 867 1.617947 GGACTGAGCTGGTAGGTGGG 61.618 65.000 0.00 0.00 0.00 4.61
923 944 4.893608 ACATTAACCCAAATTGGTCAAGC 58.106 39.130 11.52 0.00 37.76 4.01
960 981 3.394874 CTGACACACGGACGCACG 61.395 66.667 0.00 0.00 40.31 5.34
1017 1038 1.961277 CAGACCAACCCACTCACGC 60.961 63.158 0.00 0.00 0.00 5.34
1125 1146 3.072476 CTGGTCCAGGTCCAGGTG 58.928 66.667 21.95 0.83 46.03 4.00
1129 1150 0.842030 AATCAGCTGGTCCAGGTCCA 60.842 55.000 20.90 10.87 40.40 4.02
1130 1151 1.204146 TAATCAGCTGGTCCAGGTCC 58.796 55.000 20.90 3.69 40.40 4.46
1131 1152 3.350219 TTTAATCAGCTGGTCCAGGTC 57.650 47.619 20.90 4.46 40.40 3.85
1132 1153 4.322057 AATTTAATCAGCTGGTCCAGGT 57.678 40.909 18.12 18.12 43.33 4.00
1212 1233 9.539825 ACATCACAACATAAGCAAAACATAAAA 57.460 25.926 0.00 0.00 0.00 1.52
1570 1592 1.988293 TGGTTACCACCCAACATGTG 58.012 50.000 0.00 0.00 43.49 3.21
1970 2083 7.279981 CAGACCAATGGAAGAAATTGATACGTA 59.720 37.037 6.16 0.00 37.22 3.57
2285 2401 1.153745 GTGACCGCCAGCTGACTAG 60.154 63.158 17.39 0.00 0.00 2.57
2620 2738 2.164219 ACAGTGGGCAATTATGAAAGCG 59.836 45.455 0.00 0.00 0.00 4.68
2952 3070 0.109597 GTTTGCCGATTCCTGCACTG 60.110 55.000 0.00 0.00 37.18 3.66
2953 3071 1.577328 CGTTTGCCGATTCCTGCACT 61.577 55.000 0.00 0.00 39.56 4.40
3211 3331 1.286553 AGAGGATGGAGAAGAGACGGT 59.713 52.381 0.00 0.00 0.00 4.83
3436 3556 4.686554 GCTCGTAATTGAAGAGTGTGTTCT 59.313 41.667 7.96 0.00 36.17 3.01
3696 3819 1.404391 CAGCTAGGCAGAAGCAAATGG 59.596 52.381 8.84 0.00 44.61 3.16
4529 4654 1.203038 TGAACTGCCAATCACCATGGT 60.203 47.619 13.00 13.00 40.23 3.55
4568 4693 7.497925 ACAGTTGACAAGTAGAAAATCCTTC 57.502 36.000 0.00 0.00 0.00 3.46
4640 4766 4.099380 TCACGCGACAGTCATTGTATAA 57.901 40.909 15.93 0.00 41.05 0.98
4642 4768 2.647529 TCACGCGACAGTCATTGTAT 57.352 45.000 15.93 0.00 41.05 2.29
4796 4923 8.798859 AAGTGTACATATTTTCTCTTGAGCAT 57.201 30.769 0.00 0.00 0.00 3.79
4822 4950 0.603707 GCCTGTTGAGCTGTGCAGTA 60.604 55.000 0.00 0.00 0.00 2.74
4832 4960 4.614673 GCGTGTTTGCCTGTTGAG 57.385 55.556 0.00 0.00 0.00 3.02
4867 4995 5.880054 TGGCTGAAATCTTAGTTTGCTAC 57.120 39.130 0.00 0.00 0.00 3.58
5088 5222 2.750637 GCGACGAGGAGGGAGTGA 60.751 66.667 0.00 0.00 0.00 3.41
5100 5234 0.949105 GGGGCATTACATAGGCGACG 60.949 60.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.