Multiple sequence alignment - TraesCS4D01G228200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G228200 chr4D 100.000 4769 0 0 1 4769 387753842 387758610 0.000000e+00 8807.0
1 TraesCS4D01G228200 chr4D 94.792 96 3 2 1 95 389518939 389518845 1.070000e-31 148.0
2 TraesCS4D01G228200 chr4B 95.315 3543 100 19 182 3680 476062935 476066455 0.000000e+00 5563.0
3 TraesCS4D01G228200 chr4B 90.663 332 16 6 4438 4769 476067532 476067848 1.230000e-115 427.0
4 TraesCS4D01G228200 chr4A 94.988 2893 81 15 818 3680 68957328 68960186 0.000000e+00 4481.0
5 TraesCS4D01G228200 chr4A 90.710 549 28 10 96 636 68955803 68956336 0.000000e+00 710.0
6 TraesCS4D01G228200 chr4A 89.137 313 12 7 4435 4746 68972669 68972960 2.100000e-98 370.0
7 TraesCS4D01G228200 chr4A 93.548 124 8 0 639 762 68956432 68956555 8.150000e-43 185.0
8 TraesCS4D01G228200 chr4A 94.845 97 2 2 1 95 715877670 715877765 1.070000e-31 148.0
9 TraesCS4D01G228200 chr4A 93.939 99 3 3 1 98 37067791 37067695 3.850000e-31 147.0
10 TraesCS4D01G228200 chr4A 97.143 35 1 0 3685 3719 68960216 68960250 5.150000e-05 60.2
11 TraesCS4D01G228200 chr6B 95.960 99 2 2 1 98 444307594 444307497 4.940000e-35 159.0
12 TraesCS4D01G228200 chrUn 94.000 100 2 3 1 98 473484387 473484290 1.070000e-31 148.0
13 TraesCS4D01G228200 chr7D 93.939 99 3 3 1 98 8991474 8991378 3.850000e-31 147.0
14 TraesCS4D01G228200 chr5D 94.737 95 3 2 1 95 422435044 422435136 3.850000e-31 147.0
15 TraesCS4D01G228200 chr5D 94.737 95 3 2 1 95 486293225 486293133 3.850000e-31 147.0
16 TraesCS4D01G228200 chr5A 93.137 102 2 3 1 98 359046679 359046579 1.380000e-30 145.0
17 TraesCS4D01G228200 chr2A 74.865 370 66 24 2577 2934 652289909 652290263 4.980000e-30 143.0
18 TraesCS4D01G228200 chr3D 88.596 114 12 1 1117 1229 295533846 295533959 2.310000e-28 137.0
19 TraesCS4D01G228200 chr3D 89.583 48 5 0 2907 2954 487120179 487120226 1.430000e-05 62.1
20 TraesCS4D01G228200 chr2D 74.595 370 67 24 2577 2934 507750952 507751306 2.310000e-28 137.0
21 TraesCS4D01G228200 chr3A 92.157 51 2 2 2912 2961 630762443 630762492 2.380000e-08 71.3
22 TraesCS4D01G228200 chr3A 89.583 48 5 0 2907 2954 630770014 630770061 1.430000e-05 62.1
23 TraesCS4D01G228200 chr3B 90.566 53 3 2 2907 2958 649998934 649998985 8.560000e-08 69.4
24 TraesCS4D01G228200 chr3B 89.583 48 5 0 2907 2954 650057994 650058041 1.430000e-05 62.1
25 TraesCS4D01G228200 chr1A 82.143 84 9 4 4263 4345 407329453 407329375 3.080000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G228200 chr4D 387753842 387758610 4768 False 8807.00 8807 100.00000 1 4769 1 chr4D.!!$F1 4768
1 TraesCS4D01G228200 chr4B 476062935 476067848 4913 False 2995.00 5563 92.98900 182 4769 2 chr4B.!!$F1 4587
2 TraesCS4D01G228200 chr4A 68955803 68960250 4447 False 1359.05 4481 94.09725 96 3719 4 chr4A.!!$F3 3623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 1688 0.032130 CCTACACATCCGTCCATCCG 59.968 60.000 0.0 0.0 0.00 4.18 F
820 1690 0.742505 TACACATCCGTCCATCCGAC 59.257 55.000 0.0 0.0 38.21 4.79 F
1071 1948 1.032657 GCTACTCCTCCTCGTGCTCA 61.033 60.000 0.0 0.0 0.00 4.26 F
1835 2712 1.151450 CAAGGTGTGCTGGAAGGGT 59.849 57.895 0.0 0.0 0.00 4.34 F
3442 4353 1.732077 CGAGTGAGCAGAAGTCAGAGC 60.732 57.143 0.0 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2826 1.202440 CCGATGGCAATTGGGTCAATG 60.202 52.381 7.72 0.00 34.04 2.82 R
1994 2871 3.041940 GAGGTGGCCACGAACACG 61.042 66.667 29.08 0.00 38.46 4.49 R
3062 3939 1.683943 CCGAGATGGACGGGTAGTTA 58.316 55.000 0.00 0.00 45.65 2.24 R
3555 4466 0.875040 CTATCTCACTGCCTGCGCTG 60.875 60.000 9.73 8.47 39.68 5.18 R
4639 5947 0.105039 GGACGATTCTACCAGGCAGG 59.895 60.000 0.00 0.00 45.67 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
25 26 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
26 27 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
27 28 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
28 29 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
29 30 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
30 31 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
31 32 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
32 33 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
33 34 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
34 35 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
35 36 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
36 37 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
37 38 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
38 39 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
39 40 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
40 41 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
41 42 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
42 43 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
43 44 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
44 45 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
89 90 6.452494 TTTTTGATTTTACTGTTCACCCGA 57.548 33.333 0.00 0.00 0.00 5.14
90 91 5.682943 TTTGATTTTACTGTTCACCCGAG 57.317 39.130 0.00 0.00 0.00 4.63
91 92 3.071479 TGATTTTACTGTTCACCCGAGC 58.929 45.455 0.00 0.00 0.00 5.03
92 93 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
93 94 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
94 95 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
115 116 3.797256 CAGATTGGTTCGTCGGTTCTATC 59.203 47.826 0.00 0.00 0.00 2.08
120 121 2.095853 GGTTCGTCGGTTCTATCGTACA 59.904 50.000 0.00 0.00 0.00 2.90
139 140 2.289694 ACAAAACCCAGTCTCCATCTCG 60.290 50.000 0.00 0.00 0.00 4.04
201 205 1.203994 GATCTTTCCTCGTGAACGGGA 59.796 52.381 3.84 6.63 43.86 5.14
224 228 1.742761 CACGAGCCAATCAATCAGGT 58.257 50.000 0.00 0.00 0.00 4.00
277 281 2.140717 GGTAACGACAAACCACTGGAG 58.859 52.381 0.71 0.00 35.73 3.86
285 289 1.407656 AAACCACTGGAGACCGAGCA 61.408 55.000 0.71 0.00 0.00 4.26
339 343 4.083862 ACGCTCCCTCCTTTCGCC 62.084 66.667 0.00 0.00 0.00 5.54
363 367 3.087031 CCTTCTACGGGTTCAGTCTACA 58.913 50.000 0.00 0.00 0.00 2.74
473 486 4.574013 CCTCAGAATCCATGAAAGCTACAC 59.426 45.833 0.00 0.00 0.00 2.90
474 487 5.164620 TCAGAATCCATGAAAGCTACACA 57.835 39.130 0.00 0.00 0.00 3.72
640 753 2.829384 AAAGGCGCTGACCCCAGAA 61.829 57.895 7.64 0.00 43.02 3.02
718 831 0.376152 CGATGACGCTACGGTACAGT 59.624 55.000 3.62 3.62 0.00 3.55
721 834 0.721154 TGACGCTACGGTACAGTACG 59.279 55.000 18.58 18.58 0.00 3.67
744 857 2.302952 CGGTCACACGCTCACACTG 61.303 63.158 0.00 0.00 0.00 3.66
762 875 3.061848 GCCCATCCACACCCAACG 61.062 66.667 0.00 0.00 0.00 4.10
809 1679 4.088421 CGACACGCCTACACATCC 57.912 61.111 0.00 0.00 0.00 3.51
810 1680 1.872234 CGACACGCCTACACATCCG 60.872 63.158 0.00 0.00 0.00 4.18
811 1681 1.214589 GACACGCCTACACATCCGT 59.785 57.895 0.00 0.00 0.00 4.69
812 1682 0.801067 GACACGCCTACACATCCGTC 60.801 60.000 0.00 0.00 0.00 4.79
813 1683 1.518572 CACGCCTACACATCCGTCC 60.519 63.158 0.00 0.00 0.00 4.79
814 1684 1.980232 ACGCCTACACATCCGTCCA 60.980 57.895 0.00 0.00 0.00 4.02
815 1685 1.327690 ACGCCTACACATCCGTCCAT 61.328 55.000 0.00 0.00 0.00 3.41
816 1686 0.597637 CGCCTACACATCCGTCCATC 60.598 60.000 0.00 0.00 0.00 3.51
817 1687 0.249911 GCCTACACATCCGTCCATCC 60.250 60.000 0.00 0.00 0.00 3.51
818 1688 0.032130 CCTACACATCCGTCCATCCG 59.968 60.000 0.00 0.00 0.00 4.18
819 1689 1.029681 CTACACATCCGTCCATCCGA 58.970 55.000 0.00 0.00 0.00 4.55
820 1690 0.742505 TACACATCCGTCCATCCGAC 59.257 55.000 0.00 0.00 38.21 4.79
863 1733 1.681793 GCTACAGATGTAGGGAGCGAA 59.318 52.381 18.97 0.00 46.07 4.70
934 1804 4.090057 GCACCGCGCAAGGACTTC 62.090 66.667 8.75 0.00 41.79 3.01
935 1805 3.423154 CACCGCGCAAGGACTTCC 61.423 66.667 8.75 0.00 38.28 3.46
1071 1948 1.032657 GCTACTCCTCCTCGTGCTCA 61.033 60.000 0.00 0.00 0.00 4.26
1178 2055 2.668550 GCCAAGCCGTCGGTCTTT 60.669 61.111 13.94 2.60 0.00 2.52
1835 2712 1.151450 CAAGGTGTGCTGGAAGGGT 59.849 57.895 0.00 0.00 0.00 4.34
2057 2934 2.022129 GTCAGTGACCAACCTCGCG 61.022 63.158 12.54 0.00 0.00 5.87
3442 4353 1.732077 CGAGTGAGCAGAAGTCAGAGC 60.732 57.143 0.00 0.00 0.00 4.09
3554 4465 9.467258 TTTTTCACTGCTGAGATTGATTAAAAG 57.533 29.630 0.00 0.00 0.00 2.27
3555 4466 6.187125 TCACTGCTGAGATTGATTAAAAGC 57.813 37.500 0.00 0.00 0.00 3.51
3683 4619 3.255888 GGAAAGAAAGGGCCAAACACTAG 59.744 47.826 6.18 0.00 0.00 2.57
3721 4672 7.129109 GTGTAACTTTTATGTAGCTGCTTCA 57.871 36.000 7.79 9.88 0.00 3.02
3722 4673 7.752695 GTGTAACTTTTATGTAGCTGCTTCAT 58.247 34.615 22.45 22.45 0.00 2.57
3723 4674 8.237267 GTGTAACTTTTATGTAGCTGCTTCATT 58.763 33.333 23.69 10.49 0.00 2.57
3724 4675 8.450964 TGTAACTTTTATGTAGCTGCTTCATTC 58.549 33.333 23.69 4.72 0.00 2.67
3726 4677 8.792830 AACTTTTATGTAGCTGCTTCATTCTA 57.207 30.769 23.69 6.60 0.00 2.10
3728 4679 9.401058 ACTTTTATGTAGCTGCTTCATTCTATT 57.599 29.630 23.69 5.26 0.00 1.73
3729 4680 9.875675 CTTTTATGTAGCTGCTTCATTCTATTC 57.124 33.333 23.69 0.00 0.00 1.75
3733 4684 7.353414 TGTAGCTGCTTCATTCTATTCTACT 57.647 36.000 7.79 0.00 0.00 2.57
3734 4685 7.429633 TGTAGCTGCTTCATTCTATTCTACTC 58.570 38.462 7.79 0.00 0.00 2.59
3735 4686 5.852827 AGCTGCTTCATTCTATTCTACTCC 58.147 41.667 0.00 0.00 0.00 3.85
3739 4690 4.994217 GCTTCATTCTATTCTACTCCCTGC 59.006 45.833 0.00 0.00 0.00 4.85
3741 4692 6.687647 GCTTCATTCTATTCTACTCCCTGCTT 60.688 42.308 0.00 0.00 0.00 3.91
3743 4694 7.914427 TCATTCTATTCTACTCCCTGCTTAA 57.086 36.000 0.00 0.00 0.00 1.85
3744 4695 8.319057 TCATTCTATTCTACTCCCTGCTTAAA 57.681 34.615 0.00 0.00 0.00 1.52
3745 4696 8.768397 TCATTCTATTCTACTCCCTGCTTAAAA 58.232 33.333 0.00 0.00 0.00 1.52
3746 4697 9.396022 CATTCTATTCTACTCCCTGCTTAAAAA 57.604 33.333 0.00 0.00 0.00 1.94
3818 5002 4.514401 AGGAATTTGCTAGGGTTAAGTCG 58.486 43.478 0.00 0.00 0.00 4.18
3826 5010 4.039488 TGCTAGGGTTAAGTCGACTGAAAA 59.961 41.667 20.85 11.30 0.00 2.29
3828 5012 5.642491 GCTAGGGTTAAGTCGACTGAAAATT 59.358 40.000 20.85 8.83 0.00 1.82
3829 5013 6.148976 GCTAGGGTTAAGTCGACTGAAAATTT 59.851 38.462 20.85 3.61 0.00 1.82
3831 5015 9.211485 CTAGGGTTAAGTCGACTGAAAATTTAA 57.789 33.333 20.85 9.13 0.00 1.52
3834 5018 9.687210 GGGTTAAGTCGACTGAAAATTTAATTT 57.313 29.630 20.85 0.34 0.00 1.82
3842 5026 9.607285 TCGACTGAAAATTTAATTTAAGTCAGC 57.393 29.630 27.11 19.12 41.46 4.26
3856 5040 1.537202 AGTCAGCCGATTTGTTTCAGC 59.463 47.619 0.00 0.00 0.00 4.26
3861 5045 1.685302 CCGATTTGTTTCAGCCGTTG 58.315 50.000 0.00 0.00 0.00 4.10
3862 5046 1.265635 CCGATTTGTTTCAGCCGTTGA 59.734 47.619 0.00 0.00 0.00 3.18
3865 5049 4.378978 CCGATTTGTTTCAGCCGTTGAATA 60.379 41.667 0.00 0.00 44.90 1.75
3880 5064 3.889196 TGAATAGAAAACACACGGTGC 57.111 42.857 8.30 0.00 36.98 5.01
3881 5065 3.206964 TGAATAGAAAACACACGGTGCA 58.793 40.909 8.30 0.00 36.98 4.57
3882 5066 3.249799 TGAATAGAAAACACACGGTGCAG 59.750 43.478 8.30 3.77 36.98 4.41
3883 5067 2.605837 TAGAAAACACACGGTGCAGA 57.394 45.000 8.30 0.00 36.98 4.26
3884 5068 1.967319 AGAAAACACACGGTGCAGAT 58.033 45.000 8.30 0.00 36.98 2.90
3886 5070 2.033299 AGAAAACACACGGTGCAGATTG 59.967 45.455 8.30 0.90 36.98 2.67
3888 5072 1.388547 AACACACGGTGCAGATTGTT 58.611 45.000 8.30 8.06 36.98 2.83
3889 5073 1.388547 ACACACGGTGCAGATTGTTT 58.611 45.000 8.30 0.00 36.98 2.83
3894 5078 1.531149 ACGGTGCAGATTGTTTCTTCG 59.469 47.619 0.00 0.00 29.93 3.79
3895 5079 1.798223 CGGTGCAGATTGTTTCTTCGA 59.202 47.619 0.00 0.00 29.93 3.71
3896 5080 2.416547 CGGTGCAGATTGTTTCTTCGAT 59.583 45.455 0.00 0.00 29.93 3.59
3897 5081 3.484229 CGGTGCAGATTGTTTCTTCGATC 60.484 47.826 0.00 0.00 29.93 3.69
3898 5082 3.686726 GGTGCAGATTGTTTCTTCGATCT 59.313 43.478 0.00 0.00 38.63 2.75
3899 5083 4.201763 GGTGCAGATTGTTTCTTCGATCTC 60.202 45.833 0.00 0.00 36.69 2.75
3900 5084 3.935203 TGCAGATTGTTTCTTCGATCTCC 59.065 43.478 0.00 0.00 36.69 3.71
3901 5085 3.935203 GCAGATTGTTTCTTCGATCTCCA 59.065 43.478 0.00 0.00 36.69 3.86
3902 5086 4.574013 GCAGATTGTTTCTTCGATCTCCAT 59.426 41.667 0.00 0.00 36.69 3.41
3903 5087 5.755375 GCAGATTGTTTCTTCGATCTCCATA 59.245 40.000 0.00 0.00 36.69 2.74
3904 5088 6.292596 GCAGATTGTTTCTTCGATCTCCATAC 60.293 42.308 0.00 0.00 36.69 2.39
3905 5089 6.201806 CAGATTGTTTCTTCGATCTCCATACC 59.798 42.308 0.00 0.00 36.69 2.73
3906 5090 5.414789 TTGTTTCTTCGATCTCCATACCA 57.585 39.130 0.00 0.00 0.00 3.25
3907 5091 4.755411 TGTTTCTTCGATCTCCATACCAC 58.245 43.478 0.00 0.00 0.00 4.16
3908 5092 4.120589 GTTTCTTCGATCTCCATACCACC 58.879 47.826 0.00 0.00 0.00 4.61
3909 5093 3.314307 TCTTCGATCTCCATACCACCT 57.686 47.619 0.00 0.00 0.00 4.00
3910 5094 3.643237 TCTTCGATCTCCATACCACCTT 58.357 45.455 0.00 0.00 0.00 3.50
3911 5095 3.637229 TCTTCGATCTCCATACCACCTTC 59.363 47.826 0.00 0.00 0.00 3.46
3914 5098 1.700186 GATCTCCATACCACCTTCCCC 59.300 57.143 0.00 0.00 0.00 4.81
3918 5102 0.707616 CCATACCACCTTCCCCCAAA 59.292 55.000 0.00 0.00 0.00 3.28
3921 5105 1.061324 TACCACCTTCCCCCAAACGT 61.061 55.000 0.00 0.00 0.00 3.99
3927 5111 1.687563 CTTCCCCCAAACGTCAAACT 58.312 50.000 0.00 0.00 0.00 2.66
3930 5114 2.574450 TCCCCCAAACGTCAAACTTAC 58.426 47.619 0.00 0.00 0.00 2.34
3936 5120 2.314323 AACGTCAAACTTACCACCGT 57.686 45.000 0.00 0.00 0.00 4.83
3937 5121 1.574134 ACGTCAAACTTACCACCGTG 58.426 50.000 0.00 0.00 0.00 4.94
3942 5217 1.673920 CAAACTTACCACCGTGCACTT 59.326 47.619 16.19 0.00 0.00 3.16
3969 5244 3.039134 CAAACTTGCACGACCCCC 58.961 61.111 0.00 0.00 0.00 5.40
3970 5245 1.826054 CAAACTTGCACGACCCCCA 60.826 57.895 0.00 0.00 0.00 4.96
3985 5260 1.345112 CCCCCACACCCCTAAGATAGT 60.345 57.143 0.00 0.00 0.00 2.12
3987 5262 2.172717 CCCCACACCCCTAAGATAGTTG 59.827 54.545 0.00 0.00 0.00 3.16
3992 5267 3.716872 ACACCCCTAAGATAGTTGATGGG 59.283 47.826 0.00 0.00 37.80 4.00
4003 5278 2.279173 AGTTGATGGGGTAGCCTTCTT 58.721 47.619 11.48 0.00 0.00 2.52
4004 5279 2.239907 AGTTGATGGGGTAGCCTTCTTC 59.760 50.000 11.48 3.79 0.00 2.87
4009 5284 1.262640 GGGGTAGCCTTCTTCGGTGA 61.263 60.000 11.48 0.00 0.00 4.02
4010 5285 0.175989 GGGTAGCCTTCTTCGGTGAG 59.824 60.000 2.95 0.00 0.00 3.51
4011 5286 0.460459 GGTAGCCTTCTTCGGTGAGC 60.460 60.000 0.00 0.00 0.00 4.26
4012 5287 0.533032 GTAGCCTTCTTCGGTGAGCT 59.467 55.000 0.00 0.00 0.00 4.09
4013 5288 0.818296 TAGCCTTCTTCGGTGAGCTC 59.182 55.000 6.82 6.82 0.00 4.09
4014 5289 1.448717 GCCTTCTTCGGTGAGCTCC 60.449 63.158 12.15 2.19 0.00 4.70
4015 5290 1.893919 GCCTTCTTCGGTGAGCTCCT 61.894 60.000 12.15 0.00 0.00 3.69
4016 5291 0.610687 CCTTCTTCGGTGAGCTCCTT 59.389 55.000 12.15 0.00 0.00 3.36
4017 5292 1.404851 CCTTCTTCGGTGAGCTCCTTC 60.405 57.143 12.15 1.59 0.00 3.46
4018 5293 0.608640 TTCTTCGGTGAGCTCCTTCC 59.391 55.000 12.15 10.19 0.00 3.46
4019 5294 0.251832 TCTTCGGTGAGCTCCTTCCT 60.252 55.000 12.15 0.00 0.00 3.36
4020 5295 0.610687 CTTCGGTGAGCTCCTTCCTT 59.389 55.000 12.15 0.00 0.00 3.36
4021 5296 0.608640 TTCGGTGAGCTCCTTCCTTC 59.391 55.000 12.15 0.00 0.00 3.46
4022 5297 0.251832 TCGGTGAGCTCCTTCCTTCT 60.252 55.000 12.15 0.00 0.00 2.85
4023 5298 0.174617 CGGTGAGCTCCTTCCTTCTC 59.825 60.000 12.15 0.00 0.00 2.87
4024 5299 0.539518 GGTGAGCTCCTTCCTTCTCC 59.460 60.000 12.15 0.00 0.00 3.71
4025 5300 0.539518 GTGAGCTCCTTCCTTCTCCC 59.460 60.000 12.15 0.00 0.00 4.30
4026 5301 0.415429 TGAGCTCCTTCCTTCTCCCT 59.585 55.000 12.15 0.00 0.00 4.20
4027 5302 0.829990 GAGCTCCTTCCTTCTCCCTG 59.170 60.000 0.87 0.00 0.00 4.45
4028 5303 0.620121 AGCTCCTTCCTTCTCCCTGG 60.620 60.000 0.00 0.00 0.00 4.45
4029 5304 1.911471 CTCCTTCCTTCTCCCTGGC 59.089 63.158 0.00 0.00 0.00 4.85
4030 5305 0.911525 CTCCTTCCTTCTCCCTGGCA 60.912 60.000 0.00 0.00 0.00 4.92
4048 5323 0.254462 CAAGCTCCTTCCTTCCCTCC 59.746 60.000 0.00 0.00 0.00 4.30
4049 5324 1.268283 AAGCTCCTTCCTTCCCTCCG 61.268 60.000 0.00 0.00 0.00 4.63
4050 5325 1.686110 GCTCCTTCCTTCCCTCCGA 60.686 63.158 0.00 0.00 0.00 4.55
4052 5327 0.755686 CTCCTTCCTTCCCTCCGATG 59.244 60.000 0.00 0.00 0.00 3.84
4054 5329 0.912486 CCTTCCTTCCCTCCGATGTT 59.088 55.000 0.00 0.00 0.00 2.71
4056 5331 0.909623 TTCCTTCCCTCCGATGTTCC 59.090 55.000 0.00 0.00 0.00 3.62
4059 5334 1.134371 CCTTCCCTCCGATGTTCCTTC 60.134 57.143 0.00 0.00 0.00 3.46
4060 5335 0.909623 TTCCCTCCGATGTTCCTTCC 59.090 55.000 0.00 0.00 0.00 3.46
4062 5337 0.912486 CCCTCCGATGTTCCTTCCTT 59.088 55.000 0.00 0.00 0.00 3.36
4063 5338 1.134371 CCCTCCGATGTTCCTTCCTTC 60.134 57.143 0.00 0.00 0.00 3.46
4064 5339 1.555075 CCTCCGATGTTCCTTCCTTCA 59.445 52.381 0.00 0.00 0.00 3.02
4065 5340 2.171448 CCTCCGATGTTCCTTCCTTCAT 59.829 50.000 0.00 0.00 0.00 2.57
4066 5341 3.388024 CCTCCGATGTTCCTTCCTTCATA 59.612 47.826 0.00 0.00 0.00 2.15
4071 5346 5.822519 CCGATGTTCCTTCCTTCATATGAAA 59.177 40.000 18.47 2.75 33.07 2.69
4078 5353 6.889198 TCCTTCCTTCATATGAAAATCGACT 58.111 36.000 18.47 0.00 33.07 4.18
4083 5358 6.051717 CCTTCATATGAAAATCGACTGACCT 58.948 40.000 18.47 0.00 33.07 3.85
4152 5427 9.887406 ATCTAACGTAAACTTTTGTATGTTTGG 57.113 29.630 0.00 0.00 37.06 3.28
4161 5436 2.917713 TGTATGTTTGGGGAGCCATT 57.082 45.000 0.00 0.00 0.00 3.16
4162 5437 2.455557 TGTATGTTTGGGGAGCCATTG 58.544 47.619 0.00 0.00 0.00 2.82
4180 5456 4.244862 CATTGTGCCTTCCCATTTTGTAC 58.755 43.478 0.00 0.00 0.00 2.90
4188 5464 1.349688 TCCCATTTTGTACGAGCCTGT 59.650 47.619 0.00 0.00 0.00 4.00
4192 5468 1.890876 TTTTGTACGAGCCTGTGCAT 58.109 45.000 0.00 0.00 41.13 3.96
4193 5469 1.155889 TTTGTACGAGCCTGTGCATG 58.844 50.000 0.00 0.00 41.13 4.06
4194 5470 0.320050 TTGTACGAGCCTGTGCATGA 59.680 50.000 0.00 0.00 41.13 3.07
4195 5471 0.108662 TGTACGAGCCTGTGCATGAG 60.109 55.000 0.00 0.00 41.13 2.90
4196 5472 0.173481 GTACGAGCCTGTGCATGAGA 59.827 55.000 0.00 0.00 41.13 3.27
4197 5473 1.114627 TACGAGCCTGTGCATGAGAT 58.885 50.000 0.00 0.00 41.13 2.75
4198 5474 0.179089 ACGAGCCTGTGCATGAGATC 60.179 55.000 0.00 0.00 41.13 2.75
4199 5475 0.104487 CGAGCCTGTGCATGAGATCT 59.896 55.000 0.00 0.00 41.13 2.75
4200 5476 1.472904 CGAGCCTGTGCATGAGATCTT 60.473 52.381 0.00 0.00 41.13 2.40
4201 5477 2.641305 GAGCCTGTGCATGAGATCTTT 58.359 47.619 0.00 0.00 41.13 2.52
4202 5478 2.613133 GAGCCTGTGCATGAGATCTTTC 59.387 50.000 0.00 0.00 41.13 2.62
4203 5479 1.674962 GCCTGTGCATGAGATCTTTCC 59.325 52.381 0.00 0.00 37.47 3.13
4204 5480 2.683152 GCCTGTGCATGAGATCTTTCCT 60.683 50.000 0.00 0.00 37.47 3.36
4205 5481 3.204526 CCTGTGCATGAGATCTTTCCTC 58.795 50.000 0.00 0.00 0.00 3.71
4206 5482 2.864946 CTGTGCATGAGATCTTTCCTCG 59.135 50.000 0.00 0.00 33.51 4.63
4207 5483 2.208431 GTGCATGAGATCTTTCCTCGG 58.792 52.381 0.00 0.00 33.51 4.63
4208 5484 1.833630 TGCATGAGATCTTTCCTCGGT 59.166 47.619 0.00 0.00 33.51 4.69
4213 5489 3.698289 TGAGATCTTTCCTCGGTGTACT 58.302 45.455 0.00 0.00 33.51 2.73
4214 5490 3.444034 TGAGATCTTTCCTCGGTGTACTG 59.556 47.826 0.00 0.00 33.51 2.74
4226 5502 5.339008 TCGGTGTACTGCTCAATTTCTAT 57.661 39.130 0.00 0.00 0.00 1.98
4243 5519 9.520204 CAATTTCTATATGGATGGTCACAAAAC 57.480 33.333 0.00 0.00 0.00 2.43
4246 5522 6.356556 TCTATATGGATGGTCACAAAACCTG 58.643 40.000 0.00 0.00 40.20 4.00
4247 5523 3.524095 ATGGATGGTCACAAAACCTGA 57.476 42.857 0.00 0.00 40.20 3.86
4248 5524 2.862541 TGGATGGTCACAAAACCTGAG 58.137 47.619 0.00 0.00 40.20 3.35
4249 5525 1.541588 GGATGGTCACAAAACCTGAGC 59.458 52.381 0.00 0.00 40.20 4.26
4251 5527 2.363306 TGGTCACAAAACCTGAGCAT 57.637 45.000 0.00 0.00 40.38 3.79
4252 5528 3.500448 TGGTCACAAAACCTGAGCATA 57.500 42.857 0.00 0.00 40.38 3.14
4253 5529 4.032960 TGGTCACAAAACCTGAGCATAT 57.967 40.909 0.00 0.00 40.38 1.78
4254 5530 3.758023 TGGTCACAAAACCTGAGCATATG 59.242 43.478 0.00 0.00 40.38 1.78
4255 5531 4.009675 GGTCACAAAACCTGAGCATATGA 58.990 43.478 6.97 0.00 36.38 2.15
4256 5532 4.458989 GGTCACAAAACCTGAGCATATGAA 59.541 41.667 6.97 0.00 36.38 2.57
4257 5533 5.392380 GGTCACAAAACCTGAGCATATGAAG 60.392 44.000 6.97 0.21 36.38 3.02
4259 5535 5.769662 TCACAAAACCTGAGCATATGAAGTT 59.230 36.000 6.97 0.00 0.00 2.66
4260 5536 6.265196 TCACAAAACCTGAGCATATGAAGTTT 59.735 34.615 6.97 5.22 0.00 2.66
4262 5538 7.439056 CACAAAACCTGAGCATATGAAGTTTTT 59.561 33.333 6.97 5.14 34.65 1.94
4285 5569 8.974060 TTTTTAATGAGTGTGTCTAGGTCTTT 57.026 30.769 0.00 0.00 0.00 2.52
4288 5572 4.322080 TGAGTGTGTCTAGGTCTTTGTG 57.678 45.455 0.00 0.00 0.00 3.33
4291 5575 3.904339 AGTGTGTCTAGGTCTTTGTGGAT 59.096 43.478 0.00 0.00 0.00 3.41
4293 5577 4.452455 GTGTGTCTAGGTCTTTGTGGATTG 59.548 45.833 0.00 0.00 0.00 2.67
4294 5578 4.346709 TGTGTCTAGGTCTTTGTGGATTGA 59.653 41.667 0.00 0.00 0.00 2.57
4321 5605 8.908786 ACTTAATCAAGTCTCAGTTCAAATGA 57.091 30.769 0.00 0.00 41.25 2.57
4322 5606 9.512588 ACTTAATCAAGTCTCAGTTCAAATGAT 57.487 29.630 0.00 0.00 41.25 2.45
4327 5611 8.908786 TCAAGTCTCAGTTCAAATGATAAAGT 57.091 30.769 0.00 0.00 0.00 2.66
4328 5612 9.996554 TCAAGTCTCAGTTCAAATGATAAAGTA 57.003 29.630 0.00 0.00 0.00 2.24
4331 5615 9.778741 AGTCTCAGTTCAAATGATAAAGTAACA 57.221 29.630 0.00 0.00 0.00 2.41
4375 5659 8.538409 AAGGTAAATTTTGCATGAATCTTCAC 57.462 30.769 0.00 0.00 40.49 3.18
4376 5660 7.669427 AGGTAAATTTTGCATGAATCTTCACA 58.331 30.769 0.00 0.00 40.49 3.58
4379 5663 7.416154 AAATTTTGCATGAATCTTCACACAG 57.584 32.000 0.00 0.00 40.49 3.66
4380 5664 5.771153 TTTTGCATGAATCTTCACACAGA 57.229 34.783 0.00 0.00 40.49 3.41
4381 5665 5.970317 TTTGCATGAATCTTCACACAGAT 57.030 34.783 0.00 0.00 40.49 2.90
4382 5666 5.556355 TTGCATGAATCTTCACACAGATC 57.444 39.130 0.00 0.00 40.49 2.75
4383 5667 4.581868 TGCATGAATCTTCACACAGATCA 58.418 39.130 0.00 0.00 40.49 2.92
4384 5668 4.393990 TGCATGAATCTTCACACAGATCAC 59.606 41.667 0.00 0.00 40.49 3.06
4387 5672 6.259387 GCATGAATCTTCACACAGATCACATA 59.741 38.462 0.00 0.00 40.49 2.29
4396 5681 9.264719 CTTCACACAGATCACATAAATATAGCA 57.735 33.333 0.00 0.00 0.00 3.49
4399 5684 9.211485 CACACAGATCACATAAATATAGCATCA 57.789 33.333 0.00 0.00 0.00 3.07
4402 5687 8.929746 ACAGATCACATAAATATAGCATCAACG 58.070 33.333 0.00 0.00 0.00 4.10
4404 5689 9.144747 AGATCACATAAATATAGCATCAACGAC 57.855 33.333 0.00 0.00 0.00 4.34
4407 5692 7.812669 TCACATAAATATAGCATCAACGACGAT 59.187 33.333 0.00 0.00 0.00 3.73
4424 5709 6.207213 ACGACGATATAACCAAATCTCAGTC 58.793 40.000 0.00 0.00 0.00 3.51
4427 5712 8.237949 CGACGATATAACCAAATCTCAGTCTAT 58.762 37.037 0.00 0.00 0.00 1.98
4429 5714 9.698309 ACGATATAACCAAATCTCAGTCTATTG 57.302 33.333 0.00 0.00 0.00 1.90
4434 5719 6.552445 ACCAAATCTCAGTCTATTGCTAGT 57.448 37.500 0.00 0.00 0.00 2.57
4435 5720 7.661536 ACCAAATCTCAGTCTATTGCTAGTA 57.338 36.000 0.00 0.00 0.00 1.82
4436 5721 8.079211 ACCAAATCTCAGTCTATTGCTAGTAA 57.921 34.615 0.00 0.00 0.00 2.24
4437 5722 7.982354 ACCAAATCTCAGTCTATTGCTAGTAAC 59.018 37.037 0.00 0.00 0.00 2.50
4439 5724 9.539825 CAAATCTCAGTCTATTGCTAGTAACAT 57.460 33.333 0.00 0.00 0.00 2.71
4461 5769 8.437360 ACATTGTTTTATAATCGCAGAGATGA 57.563 30.769 0.00 0.00 43.63 2.92
4485 5793 1.135083 AGTTCGTTGGATGCTCGGTAG 60.135 52.381 3.28 0.00 0.00 3.18
4558 5866 0.108138 CGAGGAAAGCGAGGGTTGAT 60.108 55.000 0.00 0.00 0.00 2.57
4594 5902 2.896168 CGGGGTACTCGAATAAGCAAA 58.104 47.619 3.69 0.00 0.00 3.68
4595 5903 3.463944 CGGGGTACTCGAATAAGCAAAT 58.536 45.455 3.69 0.00 0.00 2.32
4610 5918 3.101437 AGCAAATGCCATCATTCTTGGA 58.899 40.909 0.94 0.00 41.77 3.53
4639 5947 3.247442 TCGATCCACAACGTGAATACAC 58.753 45.455 0.00 0.00 42.88 2.90
4640 5948 2.347452 CGATCCACAACGTGAATACACC 59.653 50.000 0.00 0.00 43.34 4.16
4641 5949 3.596214 GATCCACAACGTGAATACACCT 58.404 45.455 0.00 0.00 43.34 4.00
4642 5950 2.761559 TCCACAACGTGAATACACCTG 58.238 47.619 0.00 0.00 43.34 4.00
4662 5970 1.270358 GCCTGGTAGAATCGTCCATCC 60.270 57.143 0.00 0.00 0.00 3.51
4667 5975 2.559231 GGTAGAATCGTCCATCCTCTCC 59.441 54.545 0.00 0.00 0.00 3.71
4668 5976 1.323412 AGAATCGTCCATCCTCTCCG 58.677 55.000 0.00 0.00 0.00 4.63
4669 5977 0.315568 GAATCGTCCATCCTCTCCGG 59.684 60.000 0.00 0.00 0.00 5.14
4670 5978 0.397254 AATCGTCCATCCTCTCCGGT 60.397 55.000 0.00 0.00 0.00 5.28
4671 5979 0.824182 ATCGTCCATCCTCTCCGGTC 60.824 60.000 0.00 0.00 0.00 4.79
4672 5980 2.835705 CGTCCATCCTCTCCGGTCG 61.836 68.421 0.00 0.00 0.00 4.79
4673 5981 1.453379 GTCCATCCTCTCCGGTCGA 60.453 63.158 0.00 0.00 0.00 4.20
4674 5982 0.824182 GTCCATCCTCTCCGGTCGAT 60.824 60.000 0.00 0.00 0.00 3.59
4675 5983 0.537600 TCCATCCTCTCCGGTCGATC 60.538 60.000 0.00 0.00 0.00 3.69
4716 6024 0.616395 TTCTATCCGGTGGTGCAGGA 60.616 55.000 0.00 0.00 45.24 3.86
4730 6038 2.697751 GTGCAGGACTCCACTCAGATAT 59.302 50.000 0.00 0.00 0.00 1.63
4733 6041 1.959985 AGGACTCCACTCAGATATGCG 59.040 52.381 0.00 0.00 0.00 4.73
4744 6052 2.693074 TCAGATATGCGGCTACACAAGA 59.307 45.455 0.00 0.00 0.00 3.02
4749 6057 3.764885 ATGCGGCTACACAAGAAATTC 57.235 42.857 0.00 0.00 0.00 2.17
4754 6062 4.982295 GCGGCTACACAAGAAATTCTTTTT 59.018 37.500 5.36 0.00 33.78 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
1 2 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
2 3 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
3 4 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
4 5 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
5 6 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
6 7 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
7 8 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
8 9 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
9 10 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
10 11 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
11 12 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
12 13 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
13 14 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
14 15 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
15 16 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
16 17 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
17 18 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
18 19 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
19 20 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
20 21 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
66 67 6.452494 TCGGGTGAACAGTAAAATCAAAAA 57.548 33.333 0.00 0.00 0.00 1.94
67 68 5.506649 GCTCGGGTGAACAGTAAAATCAAAA 60.507 40.000 0.00 0.00 0.00 2.44
68 69 4.023536 GCTCGGGTGAACAGTAAAATCAAA 60.024 41.667 0.00 0.00 0.00 2.69
69 70 3.500680 GCTCGGGTGAACAGTAAAATCAA 59.499 43.478 0.00 0.00 0.00 2.57
70 71 3.071479 GCTCGGGTGAACAGTAAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
71 72 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
72 73 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
73 74 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
74 75 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
75 76 1.272490 CTGAGCTCGGGTGAACAGTAA 59.728 52.381 15.27 0.00 0.00 2.24
76 77 0.888619 CTGAGCTCGGGTGAACAGTA 59.111 55.000 15.27 0.00 0.00 2.74
77 78 0.827925 TCTGAGCTCGGGTGAACAGT 60.828 55.000 22.38 0.00 0.00 3.55
78 79 0.534412 ATCTGAGCTCGGGTGAACAG 59.466 55.000 22.38 5.59 0.00 3.16
79 80 0.976641 AATCTGAGCTCGGGTGAACA 59.023 50.000 22.38 2.05 0.00 3.18
80 81 1.363744 CAATCTGAGCTCGGGTGAAC 58.636 55.000 22.38 0.00 0.00 3.18
81 82 0.250234 CCAATCTGAGCTCGGGTGAA 59.750 55.000 22.38 3.24 0.00 3.18
82 83 0.904865 ACCAATCTGAGCTCGGGTGA 60.905 55.000 22.38 11.29 0.00 4.02
83 84 0.036010 AACCAATCTGAGCTCGGGTG 60.036 55.000 22.38 18.81 0.00 4.61
84 85 0.250513 GAACCAATCTGAGCTCGGGT 59.749 55.000 22.38 13.33 0.00 5.28
85 86 0.807667 CGAACCAATCTGAGCTCGGG 60.808 60.000 22.38 13.57 0.00 5.14
86 87 0.108615 ACGAACCAATCTGAGCTCGG 60.109 55.000 16.98 16.98 0.00 4.63
87 88 1.272781 GACGAACCAATCTGAGCTCG 58.727 55.000 9.64 4.19 0.00 5.03
88 89 1.272781 CGACGAACCAATCTGAGCTC 58.727 55.000 6.82 6.82 0.00 4.09
89 90 0.108615 CCGACGAACCAATCTGAGCT 60.109 55.000 0.00 0.00 0.00 4.09
90 91 0.389948 ACCGACGAACCAATCTGAGC 60.390 55.000 0.00 0.00 0.00 4.26
91 92 1.993370 GAACCGACGAACCAATCTGAG 59.007 52.381 0.00 0.00 0.00 3.35
92 93 1.616865 AGAACCGACGAACCAATCTGA 59.383 47.619 0.00 0.00 0.00 3.27
93 94 2.080286 AGAACCGACGAACCAATCTG 57.920 50.000 0.00 0.00 0.00 2.90
94 95 3.488721 CGATAGAACCGACGAACCAATCT 60.489 47.826 0.00 0.00 39.76 2.40
115 116 2.536761 TGGAGACTGGGTTTTGTACG 57.463 50.000 0.00 0.00 0.00 3.67
120 121 1.978580 ACGAGATGGAGACTGGGTTTT 59.021 47.619 0.00 0.00 0.00 2.43
139 140 2.922335 GCGGCAAGAATCCAGTGAAAAC 60.922 50.000 0.00 0.00 0.00 2.43
171 172 1.069258 GGAAAGATCGGGCGGTAGG 59.931 63.158 0.00 0.00 0.00 3.18
172 173 0.032267 GAGGAAAGATCGGGCGGTAG 59.968 60.000 0.00 0.00 0.00 3.18
175 176 2.279517 CGAGGAAAGATCGGGCGG 60.280 66.667 0.00 0.00 36.54 6.13
176 177 1.878522 CACGAGGAAAGATCGGGCG 60.879 63.158 0.00 0.00 44.36 6.13
177 178 0.108329 TTCACGAGGAAAGATCGGGC 60.108 55.000 0.00 0.00 43.26 6.13
178 179 1.641577 GTTCACGAGGAAAGATCGGG 58.358 55.000 0.00 0.00 44.92 5.14
179 180 1.269166 CGTTCACGAGGAAAGATCGG 58.731 55.000 0.00 0.00 44.36 4.18
201 205 1.089920 GATTGATTGGCTCGTGCACT 58.910 50.000 16.19 0.00 41.91 4.40
224 228 0.833409 TCTGCCTGCAGAGGTGAAGA 60.833 55.000 17.39 4.62 46.80 2.87
234 238 0.401356 TGATGGAGTTTCTGCCTGCA 59.599 50.000 0.00 0.00 34.65 4.41
285 289 1.262640 AACGTTGGGGATCTAGCCGT 61.263 55.000 0.00 0.00 0.00 5.68
343 347 3.119566 GGTGTAGACTGAACCCGTAGAAG 60.120 52.174 0.00 0.00 0.00 2.85
363 367 5.221843 TGCATCAGTTGTAGTAAAGGAAGGT 60.222 40.000 0.00 0.00 0.00 3.50
420 432 0.393132 GGTCCTGGGCTAAGCACTTC 60.393 60.000 0.00 0.00 30.56 3.01
640 753 1.992557 ACCGTGGGCATTGGGATATAT 59.007 47.619 0.00 0.00 0.00 0.86
718 831 4.710695 CGTGTGACCGCCTGCGTA 62.711 66.667 10.94 0.00 37.81 4.42
744 857 2.679996 GTTGGGTGTGGATGGGCC 60.680 66.667 0.00 0.00 37.10 5.80
801 1671 0.742505 GTCGGATGGACGGATGTGTA 59.257 55.000 0.00 0.00 35.61 2.90
802 1672 1.515954 GTCGGATGGACGGATGTGT 59.484 57.895 0.00 0.00 35.61 3.72
803 1673 4.420143 GTCGGATGGACGGATGTG 57.580 61.111 0.00 0.00 35.61 3.21
810 1680 2.511600 CGCTTGGGTCGGATGGAC 60.512 66.667 0.00 0.00 45.31 4.02
818 1688 1.312371 TAAATGCTGCCGCTTGGGTC 61.312 55.000 0.70 0.00 38.44 4.46
819 1689 0.897863 TTAAATGCTGCCGCTTGGGT 60.898 50.000 0.70 0.00 38.44 4.51
820 1690 0.458370 GTTAAATGCTGCCGCTTGGG 60.458 55.000 0.70 0.00 36.97 4.12
848 1718 2.293677 CACGTATTCGCTCCCTACATCT 59.706 50.000 0.00 0.00 41.18 2.90
850 1720 2.034305 GTCACGTATTCGCTCCCTACAT 59.966 50.000 0.00 0.00 41.18 2.29
932 1802 2.204244 GTTGGGGGAGGGAGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
933 1803 4.364686 GGTTGGGGGAGGGAGGGA 62.365 72.222 0.00 0.00 0.00 4.20
934 1804 4.371231 AGGTTGGGGGAGGGAGGG 62.371 72.222 0.00 0.00 0.00 4.30
935 1805 2.692741 GAGGTTGGGGGAGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
1013 1890 0.742281 CGGCCATTGGTGAGAGAGTG 60.742 60.000 2.24 0.00 0.00 3.51
1046 1923 0.106918 CGAGGAGGAGTAGCAGGAGT 60.107 60.000 0.00 0.00 0.00 3.85
1047 1924 0.106918 ACGAGGAGGAGTAGCAGGAG 60.107 60.000 0.00 0.00 0.00 3.69
1048 1925 0.394488 CACGAGGAGGAGTAGCAGGA 60.394 60.000 0.00 0.00 0.00 3.86
1120 1997 0.108756 GTACGTCTTCCTGGCCTGTC 60.109 60.000 3.32 0.00 0.00 3.51
1121 1998 0.830444 TGTACGTCTTCCTGGCCTGT 60.830 55.000 3.32 0.00 0.00 4.00
1122 1999 0.537188 ATGTACGTCTTCCTGGCCTG 59.463 55.000 3.32 2.54 0.00 4.85
1123 2000 0.824759 GATGTACGTCTTCCTGGCCT 59.175 55.000 3.32 0.00 0.00 5.19
1124 2001 0.824759 AGATGTACGTCTTCCTGGCC 59.175 55.000 11.99 0.00 0.00 5.36
1125 2002 2.541556 GAAGATGTACGTCTTCCTGGC 58.458 52.381 33.82 18.04 45.31 4.85
1172 2049 2.671963 GCGTGGGTGGGAAAGACC 60.672 66.667 0.00 0.00 38.08 3.85
1391 2268 2.124570 CGGAGGCCCATGAACTGG 60.125 66.667 0.00 0.00 45.51 4.00
1436 2313 3.130160 ACGTCGGAGCCGTAGTCC 61.130 66.667 8.96 0.00 43.67 3.85
1631 2508 3.807538 GCCTCGACGCCGTAGTGA 61.808 66.667 0.98 0.00 37.05 3.41
1739 2616 3.833645 ATGCTCGCCGCGTAGGAA 61.834 61.111 13.39 0.00 45.00 3.36
1802 2679 3.894547 CTTGTACGCGGCCACCCTT 62.895 63.158 12.47 0.00 0.00 3.95
1949 2826 1.202440 CCGATGGCAATTGGGTCAATG 60.202 52.381 7.72 0.00 34.04 2.82
1994 2871 3.041940 GAGGTGGCCACGAACACG 61.042 66.667 29.08 0.00 38.46 4.49
3062 3939 1.683943 CCGAGATGGACGGGTAGTTA 58.316 55.000 0.00 0.00 45.65 2.24
3442 4353 2.149803 TACCACCGCAGTCCAACTCG 62.150 60.000 0.00 0.00 0.00 4.18
3478 4389 1.973281 CACCTTCAATGCGCAGGGT 60.973 57.895 18.32 15.21 31.19 4.34
3480 4391 2.879907 CCACCTTCAATGCGCAGG 59.120 61.111 18.32 14.09 0.00 4.85
3554 4465 2.913054 TATCTCACTGCCTGCGCTGC 62.913 60.000 9.73 12.54 37.45 5.25
3555 4466 0.875040 CTATCTCACTGCCTGCGCTG 60.875 60.000 9.73 8.47 39.68 5.18
3683 4619 4.943142 AGTTACACTCGAGCTACAGTAC 57.057 45.455 13.61 2.08 0.00 2.73
3719 4670 7.914427 TTAAGCAGGGAGTAGAATAGAATGA 57.086 36.000 0.00 0.00 0.00 2.57
3779 4730 8.951243 GCAAATTCCTTAGATTCAGTACTTTCT 58.049 33.333 0.00 0.00 0.00 2.52
3782 4733 9.606631 CTAGCAAATTCCTTAGATTCAGTACTT 57.393 33.333 0.00 0.00 0.00 2.24
3783 4734 8.207545 CCTAGCAAATTCCTTAGATTCAGTACT 58.792 37.037 0.00 0.00 0.00 2.73
3786 4737 6.069381 ACCCTAGCAAATTCCTTAGATTCAGT 60.069 38.462 0.00 0.00 0.00 3.41
3799 4983 4.935808 CAGTCGACTTAACCCTAGCAAATT 59.064 41.667 17.26 0.00 0.00 1.82
3803 4987 2.799017 TCAGTCGACTTAACCCTAGCA 58.201 47.619 17.26 0.00 0.00 3.49
3818 5002 8.850452 CGGCTGACTTAAATTAAATTTTCAGTC 58.150 33.333 11.77 13.99 39.45 3.51
3826 5010 9.705290 AAACAAATCGGCTGACTTAAATTAAAT 57.295 25.926 0.00 0.00 0.00 1.40
3828 5012 8.353684 TGAAACAAATCGGCTGACTTAAATTAA 58.646 29.630 0.00 0.00 0.00 1.40
3829 5013 7.877003 TGAAACAAATCGGCTGACTTAAATTA 58.123 30.769 0.00 0.00 0.00 1.40
3831 5015 6.325919 TGAAACAAATCGGCTGACTTAAAT 57.674 33.333 0.00 0.00 0.00 1.40
3834 5018 3.188460 GCTGAAACAAATCGGCTGACTTA 59.812 43.478 0.00 0.00 46.12 2.24
3835 5019 2.030805 GCTGAAACAAATCGGCTGACTT 60.031 45.455 0.00 0.00 46.12 3.01
3836 5020 1.537202 GCTGAAACAAATCGGCTGACT 59.463 47.619 0.00 0.00 46.12 3.41
3837 5021 1.969103 GCTGAAACAAATCGGCTGAC 58.031 50.000 0.00 0.00 46.12 3.51
3842 5026 1.265635 TCAACGGCTGAAACAAATCGG 59.734 47.619 0.00 0.00 0.00 4.18
3856 5040 3.249080 ACCGTGTGTTTTCTATTCAACGG 59.751 43.478 9.19 9.19 42.01 4.44
3861 5045 3.496884 TCTGCACCGTGTGTTTTCTATTC 59.503 43.478 0.00 0.00 35.75 1.75
3862 5046 3.472652 TCTGCACCGTGTGTTTTCTATT 58.527 40.909 0.00 0.00 35.75 1.73
3865 5049 1.967319 ATCTGCACCGTGTGTTTTCT 58.033 45.000 0.00 0.00 35.75 2.52
3880 5064 6.201806 GGTATGGAGATCGAAGAAACAATCTG 59.798 42.308 0.00 0.00 43.58 2.90
3881 5065 6.127054 TGGTATGGAGATCGAAGAAACAATCT 60.127 38.462 0.00 0.00 43.58 2.40
3882 5066 6.018669 GTGGTATGGAGATCGAAGAAACAATC 60.019 42.308 0.00 0.00 43.58 2.67
3883 5067 5.817816 GTGGTATGGAGATCGAAGAAACAAT 59.182 40.000 0.00 0.00 43.58 2.71
3884 5068 5.175859 GTGGTATGGAGATCGAAGAAACAA 58.824 41.667 0.00 0.00 43.58 2.83
3886 5070 4.120589 GGTGGTATGGAGATCGAAGAAAC 58.879 47.826 0.00 0.00 43.58 2.78
3888 5072 3.643237 AGGTGGTATGGAGATCGAAGAA 58.357 45.455 0.00 0.00 43.58 2.52
3889 5073 3.314307 AGGTGGTATGGAGATCGAAGA 57.686 47.619 0.00 0.00 45.75 2.87
3894 5078 1.700186 GGGGAAGGTGGTATGGAGATC 59.300 57.143 0.00 0.00 0.00 2.75
3895 5079 1.699257 GGGGGAAGGTGGTATGGAGAT 60.699 57.143 0.00 0.00 0.00 2.75
3896 5080 0.327191 GGGGGAAGGTGGTATGGAGA 60.327 60.000 0.00 0.00 0.00 3.71
3897 5081 0.623324 TGGGGGAAGGTGGTATGGAG 60.623 60.000 0.00 0.00 0.00 3.86
3898 5082 0.178828 TTGGGGGAAGGTGGTATGGA 60.179 55.000 0.00 0.00 0.00 3.41
3899 5083 0.707616 TTTGGGGGAAGGTGGTATGG 59.292 55.000 0.00 0.00 0.00 2.74
3900 5084 1.847328 GTTTGGGGGAAGGTGGTATG 58.153 55.000 0.00 0.00 0.00 2.39
3901 5085 0.330267 CGTTTGGGGGAAGGTGGTAT 59.670 55.000 0.00 0.00 0.00 2.73
3902 5086 1.061324 ACGTTTGGGGGAAGGTGGTA 61.061 55.000 0.00 0.00 0.00 3.25
3903 5087 2.347691 GACGTTTGGGGGAAGGTGGT 62.348 60.000 0.00 0.00 0.00 4.16
3904 5088 1.602605 GACGTTTGGGGGAAGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
3905 5089 0.466555 TTGACGTTTGGGGGAAGGTG 60.467 55.000 0.00 0.00 0.00 4.00
3906 5090 0.259356 TTTGACGTTTGGGGGAAGGT 59.741 50.000 0.00 0.00 0.00 3.50
3907 5091 0.671796 GTTTGACGTTTGGGGGAAGG 59.328 55.000 0.00 0.00 0.00 3.46
3908 5092 1.687563 AGTTTGACGTTTGGGGGAAG 58.312 50.000 0.00 0.00 0.00 3.46
3909 5093 2.146920 AAGTTTGACGTTTGGGGGAA 57.853 45.000 0.00 0.00 0.00 3.97
3910 5094 2.574450 GTAAGTTTGACGTTTGGGGGA 58.426 47.619 0.00 0.00 0.00 4.81
3911 5095 1.610038 GGTAAGTTTGACGTTTGGGGG 59.390 52.381 0.00 0.00 0.00 5.40
3914 5098 2.286536 CGGTGGTAAGTTTGACGTTTGG 60.287 50.000 0.00 0.00 0.00 3.28
3918 5102 1.574134 CACGGTGGTAAGTTTGACGT 58.426 50.000 0.00 0.00 0.00 4.34
3921 5105 1.134340 AGTGCACGGTGGTAAGTTTGA 60.134 47.619 12.01 0.00 0.00 2.69
3963 5238 0.623617 ATCTTAGGGGTGTGGGGGTC 60.624 60.000 0.00 0.00 0.00 4.46
3968 5243 4.444876 CCATCAACTATCTTAGGGGTGTGG 60.445 50.000 0.00 0.00 0.00 4.17
3969 5244 4.444876 CCCATCAACTATCTTAGGGGTGTG 60.445 50.000 0.00 0.00 0.00 3.82
3970 5245 3.716872 CCCATCAACTATCTTAGGGGTGT 59.283 47.826 0.00 0.00 0.00 4.16
3985 5260 1.209504 CGAAGAAGGCTACCCCATCAA 59.790 52.381 0.00 0.00 33.71 2.57
3987 5262 0.106894 CCGAAGAAGGCTACCCCATC 59.893 60.000 0.00 0.00 35.39 3.51
3992 5267 0.460459 GCTCACCGAAGAAGGCTACC 60.460 60.000 0.00 0.00 33.69 3.18
4003 5278 0.251832 AGAAGGAAGGAGCTCACCGA 60.252 55.000 17.19 0.00 34.73 4.69
4004 5279 0.174617 GAGAAGGAAGGAGCTCACCG 59.825 60.000 17.19 0.00 34.73 4.94
4009 5284 0.620121 CCAGGGAGAAGGAAGGAGCT 60.620 60.000 0.00 0.00 0.00 4.09
4010 5285 1.911471 CCAGGGAGAAGGAAGGAGC 59.089 63.158 0.00 0.00 0.00 4.70
4011 5286 0.911525 TGCCAGGGAGAAGGAAGGAG 60.912 60.000 0.00 0.00 0.00 3.69
4012 5287 0.475632 TTGCCAGGGAGAAGGAAGGA 60.476 55.000 0.00 0.00 0.00 3.36
4013 5288 0.034670 CTTGCCAGGGAGAAGGAAGG 60.035 60.000 0.00 0.00 0.00 3.46
4014 5289 0.679321 GCTTGCCAGGGAGAAGGAAG 60.679 60.000 0.00 0.00 0.00 3.46
4015 5290 1.136329 AGCTTGCCAGGGAGAAGGAA 61.136 55.000 0.00 0.00 0.00 3.36
4016 5291 1.539869 AGCTTGCCAGGGAGAAGGA 60.540 57.895 0.00 0.00 0.00 3.36
4017 5292 1.077858 GAGCTTGCCAGGGAGAAGG 60.078 63.158 0.00 0.00 0.00 3.46
4018 5293 1.077858 GGAGCTTGCCAGGGAGAAG 60.078 63.158 0.00 0.00 0.00 2.85
4019 5294 1.136329 AAGGAGCTTGCCAGGGAGAA 61.136 55.000 0.00 0.00 0.00 2.87
4020 5295 1.539869 AAGGAGCTTGCCAGGGAGA 60.540 57.895 0.00 0.00 0.00 3.71
4021 5296 1.077858 GAAGGAGCTTGCCAGGGAG 60.078 63.158 0.00 0.00 0.00 4.30
4022 5297 2.606587 GGAAGGAGCTTGCCAGGGA 61.607 63.158 0.00 0.00 0.00 4.20
4023 5298 2.044551 GGAAGGAGCTTGCCAGGG 60.045 66.667 0.00 0.00 0.00 4.45
4024 5299 0.679321 GAAGGAAGGAGCTTGCCAGG 60.679 60.000 0.00 0.00 32.16 4.45
4025 5300 0.679321 GGAAGGAAGGAGCTTGCCAG 60.679 60.000 0.00 0.00 32.16 4.85
4026 5301 1.380302 GGAAGGAAGGAGCTTGCCA 59.620 57.895 0.00 0.00 32.16 4.92
4027 5302 1.379176 GGGAAGGAAGGAGCTTGCC 60.379 63.158 0.00 0.00 32.16 4.52
4028 5303 0.393673 GAGGGAAGGAAGGAGCTTGC 60.394 60.000 0.00 0.00 31.93 4.01
4029 5304 0.254462 GGAGGGAAGGAAGGAGCTTG 59.746 60.000 0.00 0.00 0.00 4.01
4030 5305 1.268283 CGGAGGGAAGGAAGGAGCTT 61.268 60.000 0.00 0.00 0.00 3.74
4048 5323 6.925610 TTTCATATGAAGGAAGGAACATCG 57.074 37.500 17.28 0.00 35.21 3.84
4049 5324 8.072567 CGATTTTCATATGAAGGAAGGAACATC 58.927 37.037 17.28 2.80 35.21 3.06
4050 5325 7.775093 TCGATTTTCATATGAAGGAAGGAACAT 59.225 33.333 17.28 0.00 35.21 2.71
4052 5327 7.281100 AGTCGATTTTCATATGAAGGAAGGAAC 59.719 37.037 17.28 11.19 35.21 3.62
4054 5329 6.763135 CAGTCGATTTTCATATGAAGGAAGGA 59.237 38.462 17.28 10.21 35.21 3.36
4056 5331 7.254590 GGTCAGTCGATTTTCATATGAAGGAAG 60.255 40.741 17.28 11.20 35.21 3.46
4059 5334 6.051717 AGGTCAGTCGATTTTCATATGAAGG 58.948 40.000 17.28 9.23 35.21 3.46
4060 5335 8.648557 TTAGGTCAGTCGATTTTCATATGAAG 57.351 34.615 17.28 7.11 35.21 3.02
4062 5337 9.613428 AATTTAGGTCAGTCGATTTTCATATGA 57.387 29.630 0.00 0.00 0.00 2.15
4065 5340 9.443323 TGAAATTTAGGTCAGTCGATTTTCATA 57.557 29.630 0.00 0.00 0.00 2.15
4066 5341 8.335532 TGAAATTTAGGTCAGTCGATTTTCAT 57.664 30.769 0.00 0.00 0.00 2.57
4071 5346 8.792633 TGAATTTGAAATTTAGGTCAGTCGATT 58.207 29.630 4.46 0.00 0.00 3.34
4078 5353 8.912988 AGTTGTCTGAATTTGAAATTTAGGTCA 58.087 29.630 18.49 15.28 0.00 4.02
4111 5386 8.951787 TTACGTTAGATTTACACAATGGCTAT 57.048 30.769 0.00 0.00 0.00 2.97
4112 5387 8.658609 GTTTACGTTAGATTTACACAATGGCTA 58.341 33.333 0.00 0.00 0.00 3.93
4113 5388 7.389607 AGTTTACGTTAGATTTACACAATGGCT 59.610 33.333 0.00 0.00 0.00 4.75
4114 5389 7.524065 AGTTTACGTTAGATTTACACAATGGC 58.476 34.615 0.00 0.00 0.00 4.40
4115 5390 9.887406 AAAGTTTACGTTAGATTTACACAATGG 57.113 29.630 0.00 0.00 0.00 3.16
4132 5407 6.074544 TCCCCAAACATACAAAAGTTTACG 57.925 37.500 0.00 0.00 36.28 3.18
4161 5436 1.883275 CGTACAAAATGGGAAGGCACA 59.117 47.619 0.00 0.00 0.00 4.57
4162 5437 2.156098 TCGTACAAAATGGGAAGGCAC 58.844 47.619 0.00 0.00 0.00 5.01
4180 5456 0.104487 AGATCTCATGCACAGGCTCG 59.896 55.000 0.00 0.00 41.91 5.03
4188 5464 1.833630 ACCGAGGAAAGATCTCATGCA 59.166 47.619 0.00 0.00 0.00 3.96
4192 5468 3.444034 CAGTACACCGAGGAAAGATCTCA 59.556 47.826 0.00 0.00 0.00 3.27
4193 5469 3.735514 GCAGTACACCGAGGAAAGATCTC 60.736 52.174 0.00 0.00 0.00 2.75
4194 5470 2.166664 GCAGTACACCGAGGAAAGATCT 59.833 50.000 0.00 0.00 0.00 2.75
4195 5471 2.166664 AGCAGTACACCGAGGAAAGATC 59.833 50.000 0.00 0.00 0.00 2.75
4196 5472 2.166664 GAGCAGTACACCGAGGAAAGAT 59.833 50.000 0.00 0.00 0.00 2.40
4197 5473 1.544691 GAGCAGTACACCGAGGAAAGA 59.455 52.381 0.00 0.00 0.00 2.52
4198 5474 1.272490 TGAGCAGTACACCGAGGAAAG 59.728 52.381 0.00 0.00 0.00 2.62
4199 5475 1.334160 TGAGCAGTACACCGAGGAAA 58.666 50.000 0.00 0.00 0.00 3.13
4200 5476 1.334160 TTGAGCAGTACACCGAGGAA 58.666 50.000 0.00 0.00 0.00 3.36
4201 5477 1.557099 ATTGAGCAGTACACCGAGGA 58.443 50.000 0.00 0.00 0.00 3.71
4202 5478 2.386661 AATTGAGCAGTACACCGAGG 57.613 50.000 0.00 0.00 0.00 4.63
4203 5479 3.589988 AGAAATTGAGCAGTACACCGAG 58.410 45.455 0.00 0.00 0.00 4.63
4204 5480 3.678056 AGAAATTGAGCAGTACACCGA 57.322 42.857 0.00 0.00 0.00 4.69
4205 5481 6.146184 CCATATAGAAATTGAGCAGTACACCG 59.854 42.308 0.00 0.00 0.00 4.94
4206 5482 7.217200 TCCATATAGAAATTGAGCAGTACACC 58.783 38.462 0.00 0.00 0.00 4.16
4207 5483 8.715998 CATCCATATAGAAATTGAGCAGTACAC 58.284 37.037 0.00 0.00 0.00 2.90
4208 5484 7.879677 CCATCCATATAGAAATTGAGCAGTACA 59.120 37.037 0.00 0.00 0.00 2.90
4213 5489 6.712095 GTGACCATCCATATAGAAATTGAGCA 59.288 38.462 0.00 0.00 0.00 4.26
4214 5490 6.712095 TGTGACCATCCATATAGAAATTGAGC 59.288 38.462 0.00 0.00 0.00 4.26
4226 5502 4.588899 CTCAGGTTTTGTGACCATCCATA 58.411 43.478 0.00 0.00 42.35 2.74
4260 5536 8.836413 CAAAGACCTAGACACACTCATTAAAAA 58.164 33.333 0.00 0.00 0.00 1.94
4262 5538 7.441157 CACAAAGACCTAGACACACTCATTAAA 59.559 37.037 0.00 0.00 0.00 1.52
4263 5539 6.929049 CACAAAGACCTAGACACACTCATTAA 59.071 38.462 0.00 0.00 0.00 1.40
4264 5540 6.455647 CACAAAGACCTAGACACACTCATTA 58.544 40.000 0.00 0.00 0.00 1.90
4265 5541 5.300752 CACAAAGACCTAGACACACTCATT 58.699 41.667 0.00 0.00 0.00 2.57
4266 5542 4.262635 CCACAAAGACCTAGACACACTCAT 60.263 45.833 0.00 0.00 0.00 2.90
4268 5544 3.321111 TCCACAAAGACCTAGACACACTC 59.679 47.826 0.00 0.00 0.00 3.51
4269 5545 3.305720 TCCACAAAGACCTAGACACACT 58.694 45.455 0.00 0.00 0.00 3.55
4270 5546 3.746045 TCCACAAAGACCTAGACACAC 57.254 47.619 0.00 0.00 0.00 3.82
4271 5547 4.346709 TCAATCCACAAAGACCTAGACACA 59.653 41.667 0.00 0.00 0.00 3.72
4275 5559 5.087323 AGTCTCAATCCACAAAGACCTAGA 58.913 41.667 0.00 0.00 39.13 2.43
4276 5560 5.413309 AGTCTCAATCCACAAAGACCTAG 57.587 43.478 0.00 0.00 39.13 3.02
4348 5632 9.558396 TGAAGATTCATGCAAAATTTACCTTTT 57.442 25.926 0.00 0.00 31.01 2.27
4352 5636 7.384660 TGTGTGAAGATTCATGCAAAATTTACC 59.615 33.333 0.00 0.00 39.73 2.85
4353 5637 8.296799 TGTGTGAAGATTCATGCAAAATTTAC 57.703 30.769 0.00 0.00 39.73 2.01
4354 5638 8.358895 TCTGTGTGAAGATTCATGCAAAATTTA 58.641 29.630 0.00 0.00 39.73 1.40
4355 5639 7.211573 TCTGTGTGAAGATTCATGCAAAATTT 58.788 30.769 0.00 0.00 39.73 1.82
4360 5644 5.005094 TGATCTGTGTGAAGATTCATGCAA 58.995 37.500 0.00 0.00 39.73 4.08
4362 5646 4.393990 TGTGATCTGTGTGAAGATTCATGC 59.606 41.667 0.00 0.00 39.73 4.06
4376 5660 8.929746 CGTTGATGCTATATTTATGTGATCTGT 58.070 33.333 0.00 0.00 0.00 3.41
4379 5663 8.104530 CGTCGTTGATGCTATATTTATGTGATC 58.895 37.037 0.00 0.00 0.00 2.92
4380 5664 7.812669 TCGTCGTTGATGCTATATTTATGTGAT 59.187 33.333 0.00 0.00 0.00 3.06
4381 5665 7.142680 TCGTCGTTGATGCTATATTTATGTGA 58.857 34.615 0.00 0.00 0.00 3.58
4382 5666 7.333288 TCGTCGTTGATGCTATATTTATGTG 57.667 36.000 0.00 0.00 0.00 3.21
4383 5667 9.803315 ATATCGTCGTTGATGCTATATTTATGT 57.197 29.630 0.00 0.00 0.00 2.29
4387 5672 9.084164 GGTTATATCGTCGTTGATGCTATATTT 57.916 33.333 0.00 0.00 0.00 1.40
4396 5681 7.207383 TGAGATTTGGTTATATCGTCGTTGAT 58.793 34.615 0.00 0.00 0.00 2.57
4399 5684 6.570692 ACTGAGATTTGGTTATATCGTCGTT 58.429 36.000 0.00 0.00 0.00 3.85
4402 5687 9.915629 AATAGACTGAGATTTGGTTATATCGTC 57.084 33.333 0.00 0.00 0.00 4.20
4404 5689 8.651588 GCAATAGACTGAGATTTGGTTATATCG 58.348 37.037 0.00 0.00 0.00 2.92
4412 5697 7.981789 TGTTACTAGCAATAGACTGAGATTTGG 59.018 37.037 0.00 0.00 0.00 3.28
4427 5712 9.710979 GCGATTATAAAACAATGTTACTAGCAA 57.289 29.630 0.00 0.00 0.00 3.91
4429 5714 9.370126 CTGCGATTATAAAACAATGTTACTAGC 57.630 33.333 0.00 0.00 0.00 3.42
4432 5717 9.378551 TCTCTGCGATTATAAAACAATGTTACT 57.621 29.630 0.00 0.00 0.00 2.24
4435 5720 8.892723 TCATCTCTGCGATTATAAAACAATGTT 58.107 29.630 0.00 0.00 0.00 2.71
4436 5721 8.437360 TCATCTCTGCGATTATAAAACAATGT 57.563 30.769 0.00 0.00 0.00 2.71
4461 5769 2.936498 CCGAGCATCCAACGAACTTTAT 59.064 45.455 0.00 0.00 0.00 1.40
4485 5793 2.919494 CGACCCAAAAGGCACTGGC 61.919 63.158 0.00 0.00 40.86 4.85
4487 5795 0.744281 AAACGACCCAAAAGGCACTG 59.256 50.000 0.00 0.00 40.86 3.66
4530 5838 2.982744 GCTTTCCTCGTTGCTGGCC 61.983 63.158 0.00 0.00 0.00 5.36
4558 5866 2.126463 CGCGGAACTCGAGAAGCA 60.126 61.111 21.68 0.00 39.83 3.91
4583 5891 5.526115 AGAATGATGGCATTTGCTTATTCG 58.474 37.500 0.00 0.00 44.47 3.34
4594 5902 2.662866 CCAGTCCAAGAATGATGGCAT 58.337 47.619 0.00 0.00 37.88 4.40
4595 5903 1.956636 GCCAGTCCAAGAATGATGGCA 60.957 52.381 9.04 0.00 43.82 4.92
4610 5918 1.523758 GTTGTGGATCGAAAGCCAGT 58.476 50.000 5.39 0.00 34.22 4.00
4639 5947 0.105039 GGACGATTCTACCAGGCAGG 59.895 60.000 0.00 0.00 45.67 4.85
4640 5948 0.824109 TGGACGATTCTACCAGGCAG 59.176 55.000 0.00 0.00 0.00 4.85
4641 5949 1.412710 GATGGACGATTCTACCAGGCA 59.587 52.381 0.00 0.00 37.12 4.75
4642 5950 1.270358 GGATGGACGATTCTACCAGGC 60.270 57.143 0.00 0.00 37.12 4.85
4672 5980 4.467084 TCAAGGCGCACCCGGATC 62.467 66.667 10.83 0.00 39.21 3.36
4673 5981 4.778143 GTCAAGGCGCACCCGGAT 62.778 66.667 10.83 0.00 39.21 4.18
4695 6003 0.811616 CTGCACCACCGGATAGAAGC 60.812 60.000 9.46 4.83 0.00 3.86
4716 6024 0.390860 GCCGCATATCTGAGTGGAGT 59.609 55.000 0.00 0.00 37.61 3.85
4730 6038 2.778299 AGAATTTCTTGTGTAGCCGCA 58.222 42.857 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.