Multiple sequence alignment - TraesCS4D01G228000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G228000 chr4D 100.000 3127 0 0 1 3127 387335058 387338184 0.000000e+00 5775
1 TraesCS4D01G228000 chr5D 98.180 2472 43 2 1 2472 554883333 554880864 0.000000e+00 4314
2 TraesCS4D01G228000 chr5D 97.815 2471 43 2 1 2471 8002099 8004558 0.000000e+00 4253
3 TraesCS4D01G228000 chr3A 97.736 2473 49 5 1 2471 57977635 57980102 0.000000e+00 4250
4 TraesCS4D01G228000 chr3A 96.522 2473 43 11 1 2471 7292558 7290127 0.000000e+00 4050
5 TraesCS4D01G228000 chr3A 96.037 2473 67 7 1 2471 685954855 685957298 0.000000e+00 3995
6 TraesCS4D01G228000 chr3A 82.040 1637 244 32 1 1624 691597855 691599454 0.000000e+00 1349
7 TraesCS4D01G228000 chr6D 97.956 2446 48 2 1 2445 273676425 273678869 0.000000e+00 4239
8 TraesCS4D01G228000 chr2A 97.925 2362 47 2 43 2403 668463827 668461467 0.000000e+00 4089
9 TraesCS4D01G228000 chr3D 97.694 1908 42 2 568 2475 461880916 461879011 0.000000e+00 3278
10 TraesCS4D01G228000 chr3D 98.246 1254 21 1 1220 2472 578964895 578963642 0.000000e+00 2193
11 TraesCS4D01G228000 chr7B 81.690 1633 258 28 1 1624 728282238 728283838 0.000000e+00 1321
12 TraesCS4D01G228000 chr4A 91.324 219 8 4 2914 3127 68685570 68685782 3.950000e-74 289
13 TraesCS4D01G228000 chr4A 94.915 118 4 2 2505 2620 68685394 68685511 1.920000e-42 183
14 TraesCS4D01G228000 chr4B 88.957 163 13 2 2963 3125 475807513 475807670 2.460000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G228000 chr4D 387335058 387338184 3126 False 5775 5775 100.000 1 3127 1 chr4D.!!$F1 3126
1 TraesCS4D01G228000 chr5D 554880864 554883333 2469 True 4314 4314 98.180 1 2472 1 chr5D.!!$R1 2471
2 TraesCS4D01G228000 chr5D 8002099 8004558 2459 False 4253 4253 97.815 1 2471 1 chr5D.!!$F1 2470
3 TraesCS4D01G228000 chr3A 57977635 57980102 2467 False 4250 4250 97.736 1 2471 1 chr3A.!!$F1 2470
4 TraesCS4D01G228000 chr3A 7290127 7292558 2431 True 4050 4050 96.522 1 2471 1 chr3A.!!$R1 2470
5 TraesCS4D01G228000 chr3A 685954855 685957298 2443 False 3995 3995 96.037 1 2471 1 chr3A.!!$F2 2470
6 TraesCS4D01G228000 chr3A 691597855 691599454 1599 False 1349 1349 82.040 1 1624 1 chr3A.!!$F3 1623
7 TraesCS4D01G228000 chr6D 273676425 273678869 2444 False 4239 4239 97.956 1 2445 1 chr6D.!!$F1 2444
8 TraesCS4D01G228000 chr2A 668461467 668463827 2360 True 4089 4089 97.925 43 2403 1 chr2A.!!$R1 2360
9 TraesCS4D01G228000 chr3D 461879011 461880916 1905 True 3278 3278 97.694 568 2475 1 chr3D.!!$R1 1907
10 TraesCS4D01G228000 chr3D 578963642 578964895 1253 True 2193 2193 98.246 1220 2472 1 chr3D.!!$R2 1252
11 TraesCS4D01G228000 chr7B 728282238 728283838 1600 False 1321 1321 81.690 1 1624 1 chr7B.!!$F1 1623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 594 3.05625 TCAACCTTGTTGAAAGCAAAGCA 60.056 39.13 7.17 0.0 35.42 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 2586 0.034756 AGCACGTGTACATTCAGGCA 59.965 50.0 18.38 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 290 5.940470 GTGGCCCAATATTGTATAAGAGGAG 59.060 44.000 14.25 0.00 0.00 3.69
592 594 3.056250 TCAACCTTGTTGAAAGCAAAGCA 60.056 39.130 7.17 0.00 35.42 3.91
657 659 6.270695 TGATCTGATGTTAGAGGATATTGGCA 59.729 38.462 0.00 0.00 0.00 4.92
691 693 7.534723 ACAGTGGACTCTACTATTACACAAA 57.465 36.000 0.00 0.00 0.00 2.83
867 869 6.167685 GCAGAAGCTATTCAGATCAGATCAT 58.832 40.000 13.14 0.41 37.94 2.45
941 944 5.181690 AGTGTGCGCTCTGAAAATTTTTA 57.818 34.783 9.73 0.00 0.00 1.52
1811 1836 9.525409 CTTGAACAAAAGAGAATGAACAAAGAT 57.475 29.630 0.00 0.00 0.00 2.40
1954 1979 0.034059 CCACAACCGAGAGCAAGAGT 59.966 55.000 0.00 0.00 0.00 3.24
2094 2123 5.504337 GCAGCAAGTTCATCTGATTCTGATC 60.504 44.000 3.29 0.00 0.00 2.92
2101 2130 5.273674 TCATCTGATTCTGATCGAGCTTT 57.726 39.130 0.90 0.00 34.91 3.51
2252 2281 6.843333 ACAGTGCTATATGCCTATATCTGGAT 59.157 38.462 14.14 0.00 42.00 3.41
2316 2345 3.904571 TGCTGAAATCTGTCATTTGTGC 58.095 40.909 0.00 0.00 0.00 4.57
2481 2511 1.036707 TTTTCCTTGGCAAACCCTCG 58.963 50.000 0.00 0.00 33.59 4.63
2482 2512 0.183971 TTTCCTTGGCAAACCCTCGA 59.816 50.000 0.00 0.00 33.59 4.04
2483 2513 0.183971 TTCCTTGGCAAACCCTCGAA 59.816 50.000 0.00 0.00 33.59 3.71
2484 2514 0.404040 TCCTTGGCAAACCCTCGAAT 59.596 50.000 0.00 0.00 33.59 3.34
2485 2515 1.203001 TCCTTGGCAAACCCTCGAATT 60.203 47.619 0.00 0.00 33.59 2.17
2486 2516 1.202348 CCTTGGCAAACCCTCGAATTC 59.798 52.381 0.00 0.00 33.59 2.17
2487 2517 1.202348 CTTGGCAAACCCTCGAATTCC 59.798 52.381 0.00 0.00 33.59 3.01
2488 2518 0.404040 TGGCAAACCCTCGAATTCCT 59.596 50.000 0.00 0.00 33.59 3.36
2489 2519 1.095600 GGCAAACCCTCGAATTCCTC 58.904 55.000 0.00 0.00 0.00 3.71
2490 2520 1.613255 GGCAAACCCTCGAATTCCTCA 60.613 52.381 0.00 0.00 0.00 3.86
2491 2521 2.159382 GCAAACCCTCGAATTCCTCAA 58.841 47.619 0.00 0.00 0.00 3.02
2492 2522 2.556622 GCAAACCCTCGAATTCCTCAAA 59.443 45.455 0.00 0.00 0.00 2.69
2493 2523 3.005367 GCAAACCCTCGAATTCCTCAAAA 59.995 43.478 0.00 0.00 0.00 2.44
2494 2524 4.500716 GCAAACCCTCGAATTCCTCAAAAA 60.501 41.667 0.00 0.00 0.00 1.94
2495 2525 5.222631 CAAACCCTCGAATTCCTCAAAAAG 58.777 41.667 0.00 0.00 0.00 2.27
2496 2526 2.820197 ACCCTCGAATTCCTCAAAAAGC 59.180 45.455 0.00 0.00 0.00 3.51
2497 2527 3.084786 CCCTCGAATTCCTCAAAAAGCT 58.915 45.455 0.00 0.00 0.00 3.74
2498 2528 3.507622 CCCTCGAATTCCTCAAAAAGCTT 59.492 43.478 0.00 0.00 0.00 3.74
2499 2529 4.479619 CCTCGAATTCCTCAAAAAGCTTG 58.520 43.478 0.00 0.00 0.00 4.01
2500 2530 4.216257 CCTCGAATTCCTCAAAAAGCTTGA 59.784 41.667 0.00 0.00 0.00 3.02
2501 2531 5.105997 CCTCGAATTCCTCAAAAAGCTTGAT 60.106 40.000 0.00 0.00 0.00 2.57
2502 2532 6.331369 TCGAATTCCTCAAAAAGCTTGATT 57.669 33.333 0.00 0.00 0.00 2.57
2503 2533 6.381801 TCGAATTCCTCAAAAAGCTTGATTC 58.618 36.000 0.00 0.00 0.00 2.52
2504 2534 6.207417 TCGAATTCCTCAAAAAGCTTGATTCT 59.793 34.615 0.00 0.00 0.00 2.40
2505 2535 7.390440 TCGAATTCCTCAAAAAGCTTGATTCTA 59.610 33.333 0.00 0.00 0.00 2.10
2506 2536 7.695618 CGAATTCCTCAAAAAGCTTGATTCTAG 59.304 37.037 0.00 0.00 0.00 2.43
2507 2537 8.641498 AATTCCTCAAAAAGCTTGATTCTAGA 57.359 30.769 0.00 0.00 0.00 2.43
2508 2538 8.820153 ATTCCTCAAAAAGCTTGATTCTAGAT 57.180 30.769 0.00 0.00 0.00 1.98
2509 2539 8.641498 TTCCTCAAAAAGCTTGATTCTAGATT 57.359 30.769 0.00 0.00 0.00 2.40
2510 2540 8.048534 TCCTCAAAAAGCTTGATTCTAGATTG 57.951 34.615 0.00 0.00 0.00 2.67
2511 2541 7.884877 TCCTCAAAAAGCTTGATTCTAGATTGA 59.115 33.333 0.00 0.00 0.00 2.57
2512 2542 8.517878 CCTCAAAAAGCTTGATTCTAGATTGAA 58.482 33.333 0.00 0.00 0.00 2.69
2513 2543 9.903682 CTCAAAAAGCTTGATTCTAGATTGAAA 57.096 29.630 0.00 0.00 0.00 2.69
2548 2578 7.812648 TGTAAAATCGGAACAAGTAATTGAGG 58.187 34.615 10.35 0.00 0.00 3.86
2549 2579 7.662258 TGTAAAATCGGAACAAGTAATTGAGGA 59.338 33.333 10.35 1.67 0.00 3.71
2550 2580 6.743575 AAATCGGAACAAGTAATTGAGGAG 57.256 37.500 10.35 0.00 0.00 3.69
2551 2581 5.677319 ATCGGAACAAGTAATTGAGGAGA 57.323 39.130 10.35 4.42 0.00 3.71
2552 2582 5.677319 TCGGAACAAGTAATTGAGGAGAT 57.323 39.130 10.35 0.00 0.00 2.75
2553 2583 6.049955 TCGGAACAAGTAATTGAGGAGATT 57.950 37.500 10.35 0.00 0.00 2.40
2554 2584 6.106673 TCGGAACAAGTAATTGAGGAGATTC 58.893 40.000 10.35 1.80 0.00 2.52
2555 2585 5.005779 CGGAACAAGTAATTGAGGAGATTCG 59.994 44.000 10.35 0.00 0.00 3.34
2556 2586 5.875359 GGAACAAGTAATTGAGGAGATTCGT 59.125 40.000 10.35 0.00 0.00 3.85
2557 2587 6.183360 GGAACAAGTAATTGAGGAGATTCGTG 60.183 42.308 10.35 0.00 0.00 4.35
2558 2588 4.631813 ACAAGTAATTGAGGAGATTCGTGC 59.368 41.667 10.35 0.00 0.00 5.34
2559 2589 3.798202 AGTAATTGAGGAGATTCGTGCC 58.202 45.455 0.00 0.00 0.00 5.01
2560 2590 3.452627 AGTAATTGAGGAGATTCGTGCCT 59.547 43.478 0.00 0.00 33.97 4.75
2561 2591 2.322355 ATTGAGGAGATTCGTGCCTG 57.678 50.000 0.00 0.00 30.70 4.85
2562 2592 1.266178 TTGAGGAGATTCGTGCCTGA 58.734 50.000 0.00 0.00 30.70 3.86
2563 2593 1.266178 TGAGGAGATTCGTGCCTGAA 58.734 50.000 0.00 0.00 30.70 3.02
2564 2594 1.833630 TGAGGAGATTCGTGCCTGAAT 59.166 47.619 0.54 0.54 41.16 2.57
2565 2595 2.208431 GAGGAGATTCGTGCCTGAATG 58.792 52.381 5.35 0.00 38.65 2.67
2566 2596 1.556911 AGGAGATTCGTGCCTGAATGT 59.443 47.619 5.35 1.77 38.65 2.71
2567 2597 2.766263 AGGAGATTCGTGCCTGAATGTA 59.234 45.455 5.35 0.00 38.65 2.29
2568 2598 2.866762 GGAGATTCGTGCCTGAATGTAC 59.133 50.000 5.35 0.00 38.65 2.90
2569 2599 3.521560 GAGATTCGTGCCTGAATGTACA 58.478 45.455 0.00 0.00 38.65 2.90
2570 2600 3.262420 AGATTCGTGCCTGAATGTACAC 58.738 45.455 0.00 0.00 38.65 2.90
2574 2604 0.165944 GTGCCTGAATGTACACGTGC 59.834 55.000 17.22 0.00 0.00 5.34
2575 2605 0.034756 TGCCTGAATGTACACGTGCT 59.965 50.000 17.22 5.64 0.00 4.40
2576 2606 0.721718 GCCTGAATGTACACGTGCTC 59.278 55.000 17.22 9.57 0.00 4.26
2577 2607 1.673033 GCCTGAATGTACACGTGCTCT 60.673 52.381 17.22 0.00 0.00 4.09
2578 2608 2.416836 GCCTGAATGTACACGTGCTCTA 60.417 50.000 17.22 0.00 0.00 2.43
2579 2609 3.845178 CCTGAATGTACACGTGCTCTAA 58.155 45.455 17.22 0.00 0.00 2.10
2580 2610 4.433615 CCTGAATGTACACGTGCTCTAAT 58.566 43.478 17.22 0.00 0.00 1.73
2581 2611 4.504461 CCTGAATGTACACGTGCTCTAATC 59.496 45.833 17.22 8.09 0.00 1.75
2582 2612 4.430007 TGAATGTACACGTGCTCTAATCC 58.570 43.478 17.22 0.00 0.00 3.01
2583 2613 4.159693 TGAATGTACACGTGCTCTAATCCT 59.840 41.667 17.22 0.00 0.00 3.24
2584 2614 4.737855 ATGTACACGTGCTCTAATCCTT 57.262 40.909 17.22 0.00 0.00 3.36
2585 2615 4.530710 TGTACACGTGCTCTAATCCTTT 57.469 40.909 17.22 0.00 0.00 3.11
2586 2616 4.242475 TGTACACGTGCTCTAATCCTTTG 58.758 43.478 17.22 0.00 0.00 2.77
2587 2617 3.678056 ACACGTGCTCTAATCCTTTGA 57.322 42.857 17.22 0.00 0.00 2.69
2588 2618 3.589988 ACACGTGCTCTAATCCTTTGAG 58.410 45.455 17.22 0.00 0.00 3.02
2594 2624 2.871633 GCTCTAATCCTTTGAGCTCAGC 59.128 50.000 17.43 8.95 46.69 4.26
2595 2625 3.432046 GCTCTAATCCTTTGAGCTCAGCT 60.432 47.826 17.43 0.00 46.69 4.24
2596 2626 4.121317 CTCTAATCCTTTGAGCTCAGCTG 58.879 47.826 17.43 7.63 39.88 4.24
2597 2627 2.875094 AATCCTTTGAGCTCAGCTGT 57.125 45.000 17.43 0.75 39.88 4.40
2598 2628 2.399916 ATCCTTTGAGCTCAGCTGTC 57.600 50.000 17.43 4.61 39.88 3.51
2599 2629 0.322975 TCCTTTGAGCTCAGCTGTCC 59.677 55.000 17.43 5.93 39.88 4.02
2600 2630 0.035881 CCTTTGAGCTCAGCTGTCCA 59.964 55.000 17.43 0.00 39.88 4.02
2601 2631 1.339824 CCTTTGAGCTCAGCTGTCCAT 60.340 52.381 17.43 0.00 39.88 3.41
2602 2632 2.434428 CTTTGAGCTCAGCTGTCCATT 58.566 47.619 17.43 0.00 39.88 3.16
2603 2633 1.817357 TTGAGCTCAGCTGTCCATTG 58.183 50.000 17.43 0.00 39.88 2.82
2604 2634 0.035725 TGAGCTCAGCTGTCCATTGG 60.036 55.000 13.74 0.00 39.88 3.16
2605 2635 0.251354 GAGCTCAGCTGTCCATTGGA 59.749 55.000 2.14 0.00 39.88 3.53
2606 2636 0.917533 AGCTCAGCTGTCCATTGGAT 59.082 50.000 14.67 0.00 37.57 3.41
2607 2637 1.134159 AGCTCAGCTGTCCATTGGATC 60.134 52.381 14.67 3.68 37.57 3.36
2608 2638 1.134159 GCTCAGCTGTCCATTGGATCT 60.134 52.381 14.67 4.13 32.73 2.75
2609 2639 2.836262 CTCAGCTGTCCATTGGATCTC 58.164 52.381 14.67 1.08 32.73 2.75
2610 2640 2.435069 CTCAGCTGTCCATTGGATCTCT 59.565 50.000 14.67 3.43 32.73 3.10
2611 2641 2.842496 TCAGCTGTCCATTGGATCTCTT 59.158 45.455 14.67 0.00 32.73 2.85
2612 2642 3.118482 TCAGCTGTCCATTGGATCTCTTC 60.118 47.826 14.67 0.00 32.73 2.87
2613 2643 2.172293 AGCTGTCCATTGGATCTCTTCC 59.828 50.000 9.01 0.00 45.69 3.46
2614 2644 2.172293 GCTGTCCATTGGATCTCTTCCT 59.828 50.000 9.01 0.00 45.68 3.36
2615 2645 3.806380 CTGTCCATTGGATCTCTTCCTG 58.194 50.000 9.01 0.00 45.68 3.86
2616 2646 2.507058 TGTCCATTGGATCTCTTCCTGG 59.493 50.000 9.01 0.00 45.68 4.45
2617 2647 2.774234 GTCCATTGGATCTCTTCCTGGA 59.226 50.000 9.01 0.00 43.32 3.86
2618 2648 3.393941 GTCCATTGGATCTCTTCCTGGAT 59.606 47.826 9.01 0.00 45.69 3.41
2619 2649 3.649981 TCCATTGGATCTCTTCCTGGATC 59.350 47.826 0.00 0.00 41.62 3.36
2620 2650 3.393609 CCATTGGATCTCTTCCTGGATCA 59.606 47.826 0.00 0.00 45.68 2.92
2621 2651 4.141321 CCATTGGATCTCTTCCTGGATCAA 60.141 45.833 0.00 0.00 45.68 2.57
2622 2652 4.767578 TTGGATCTCTTCCTGGATCAAG 57.232 45.455 0.00 0.00 45.68 3.02
2623 2653 3.999603 TGGATCTCTTCCTGGATCAAGA 58.000 45.455 0.00 1.39 45.68 3.02
2624 2654 4.365368 TGGATCTCTTCCTGGATCAAGAA 58.635 43.478 0.00 0.00 45.68 2.52
2625 2655 4.784838 TGGATCTCTTCCTGGATCAAGAAA 59.215 41.667 0.00 0.00 45.68 2.52
2626 2656 5.251468 TGGATCTCTTCCTGGATCAAGAAAA 59.749 40.000 0.00 0.00 45.68 2.29
2627 2657 5.588246 GGATCTCTTCCTGGATCAAGAAAAC 59.412 44.000 0.00 0.00 41.78 2.43
2628 2658 5.567037 TCTCTTCCTGGATCAAGAAAACA 57.433 39.130 0.00 0.00 0.00 2.83
2629 2659 6.131972 TCTCTTCCTGGATCAAGAAAACAT 57.868 37.500 0.00 0.00 0.00 2.71
2630 2660 7.257790 TCTCTTCCTGGATCAAGAAAACATA 57.742 36.000 0.00 0.00 0.00 2.29
2631 2661 7.865820 TCTCTTCCTGGATCAAGAAAACATAT 58.134 34.615 0.00 0.00 0.00 1.78
2632 2662 7.772292 TCTCTTCCTGGATCAAGAAAACATATG 59.228 37.037 0.00 0.00 0.00 1.78
2633 2663 6.319658 TCTTCCTGGATCAAGAAAACATATGC 59.680 38.462 1.58 0.00 0.00 3.14
2634 2664 4.576053 TCCTGGATCAAGAAAACATATGCG 59.424 41.667 1.58 0.00 0.00 4.73
2635 2665 4.261322 CCTGGATCAAGAAAACATATGCGG 60.261 45.833 1.58 0.00 0.00 5.69
2636 2666 3.066621 TGGATCAAGAAAACATATGCGGC 59.933 43.478 1.58 0.00 0.00 6.53
2637 2667 3.066621 GGATCAAGAAAACATATGCGGCA 59.933 43.478 4.58 4.58 0.00 5.69
2638 2668 3.485947 TCAAGAAAACATATGCGGCAC 57.514 42.857 4.03 0.00 0.00 5.01
2639 2669 2.163412 TCAAGAAAACATATGCGGCACC 59.837 45.455 4.03 0.00 0.00 5.01
2640 2670 0.732571 AGAAAACATATGCGGCACCG 59.267 50.000 4.03 4.30 43.09 4.94
2641 2671 0.248458 GAAAACATATGCGGCACCGG 60.248 55.000 4.03 0.00 40.19 5.28
2642 2672 0.963355 AAAACATATGCGGCACCGGT 60.963 50.000 4.03 0.00 40.19 5.28
2643 2673 1.373590 AAACATATGCGGCACCGGTC 61.374 55.000 2.59 0.00 40.19 4.79
2644 2674 2.108976 CATATGCGGCACCGGTCT 59.891 61.111 2.59 0.00 40.19 3.85
2645 2675 1.956170 CATATGCGGCACCGGTCTC 60.956 63.158 2.59 0.00 40.19 3.36
2646 2676 3.165160 ATATGCGGCACCGGTCTCC 62.165 63.158 2.59 8.43 40.19 3.71
2650 2680 3.382832 CGGCACCGGTCTCCTCTT 61.383 66.667 2.59 0.00 35.56 2.85
2651 2681 2.579738 GGCACCGGTCTCCTCTTC 59.420 66.667 2.59 0.00 0.00 2.87
2652 2682 1.985116 GGCACCGGTCTCCTCTTCT 60.985 63.158 2.59 0.00 0.00 2.85
2653 2683 1.545706 GGCACCGGTCTCCTCTTCTT 61.546 60.000 2.59 0.00 0.00 2.52
2654 2684 0.321996 GCACCGGTCTCCTCTTCTTT 59.678 55.000 2.59 0.00 0.00 2.52
2655 2685 1.941668 GCACCGGTCTCCTCTTCTTTG 60.942 57.143 2.59 0.00 0.00 2.77
2656 2686 0.977395 ACCGGTCTCCTCTTCTTTGG 59.023 55.000 0.00 0.00 0.00 3.28
2657 2687 0.250513 CCGGTCTCCTCTTCTTTGGG 59.749 60.000 0.00 0.00 0.00 4.12
2658 2688 0.250513 CGGTCTCCTCTTCTTTGGGG 59.749 60.000 0.00 0.00 0.00 4.96
2659 2689 0.034960 GGTCTCCTCTTCTTTGGGGC 60.035 60.000 0.00 0.00 0.00 5.80
2660 2690 0.693049 GTCTCCTCTTCTTTGGGGCA 59.307 55.000 0.00 0.00 0.00 5.36
2661 2691 1.073923 GTCTCCTCTTCTTTGGGGCAA 59.926 52.381 0.00 0.00 0.00 4.52
2662 2692 1.352352 TCTCCTCTTCTTTGGGGCAAG 59.648 52.381 0.00 0.00 0.00 4.01
2663 2693 0.251341 TCCTCTTCTTTGGGGCAAGC 60.251 55.000 0.00 0.00 0.00 4.01
2664 2694 1.253593 CCTCTTCTTTGGGGCAAGCC 61.254 60.000 1.52 1.52 0.00 4.35
2665 2695 1.589716 CTCTTCTTTGGGGCAAGCCG 61.590 60.000 4.80 0.00 36.85 5.52
2666 2696 2.600173 TTCTTTGGGGCAAGCCGG 60.600 61.111 4.80 0.00 36.85 6.13
2692 2722 4.278513 TGGACGGCCCAGGGTTTG 62.279 66.667 3.83 0.00 40.82 2.93
2694 2724 4.660938 GACGGCCCAGGGTTTGCT 62.661 66.667 7.55 0.00 0.00 3.91
2695 2725 4.218686 ACGGCCCAGGGTTTGCTT 62.219 61.111 7.55 0.00 0.00 3.91
2696 2726 3.373565 CGGCCCAGGGTTTGCTTC 61.374 66.667 7.55 0.00 0.00 3.86
2697 2727 2.203625 GGCCCAGGGTTTGCTTCA 60.204 61.111 7.55 0.00 0.00 3.02
2698 2728 2.574018 GGCCCAGGGTTTGCTTCAC 61.574 63.158 7.55 0.00 0.00 3.18
2699 2729 2.574018 GCCCAGGGTTTGCTTCACC 61.574 63.158 7.55 0.00 0.00 4.02
2700 2730 1.153756 CCCAGGGTTTGCTTCACCT 59.846 57.895 0.00 0.00 34.36 4.00
2702 2732 1.662044 CAGGGTTTGCTTCACCTGC 59.338 57.895 0.00 0.00 43.41 4.85
2703 2733 1.531602 AGGGTTTGCTTCACCTGCC 60.532 57.895 0.00 0.00 34.36 4.85
2704 2734 2.574018 GGGTTTGCTTCACCTGCCC 61.574 63.158 0.00 0.00 34.36 5.36
2705 2735 1.531602 GGTTTGCTTCACCTGCCCT 60.532 57.895 0.00 0.00 0.00 5.19
2706 2736 1.115326 GGTTTGCTTCACCTGCCCTT 61.115 55.000 0.00 0.00 0.00 3.95
2707 2737 0.752658 GTTTGCTTCACCTGCCCTTT 59.247 50.000 0.00 0.00 0.00 3.11
2708 2738 0.752054 TTTGCTTCACCTGCCCTTTG 59.248 50.000 0.00 0.00 0.00 2.77
2709 2739 0.396974 TTGCTTCACCTGCCCTTTGT 60.397 50.000 0.00 0.00 0.00 2.83
2710 2740 1.108727 TGCTTCACCTGCCCTTTGTG 61.109 55.000 0.00 0.00 0.00 3.33
2711 2741 1.109323 GCTTCACCTGCCCTTTGTGT 61.109 55.000 0.00 0.00 0.00 3.72
2712 2742 0.954452 CTTCACCTGCCCTTTGTGTC 59.046 55.000 0.00 0.00 0.00 3.67
2713 2743 0.550914 TTCACCTGCCCTTTGTGTCT 59.449 50.000 0.00 0.00 0.00 3.41
2714 2744 1.429930 TCACCTGCCCTTTGTGTCTA 58.570 50.000 0.00 0.00 0.00 2.59
2715 2745 1.985159 TCACCTGCCCTTTGTGTCTAT 59.015 47.619 0.00 0.00 0.00 1.98
2716 2746 2.086869 CACCTGCCCTTTGTGTCTATG 58.913 52.381 0.00 0.00 0.00 2.23
2717 2747 1.004745 ACCTGCCCTTTGTGTCTATGG 59.995 52.381 0.00 0.00 0.00 2.74
2718 2748 1.098050 CTGCCCTTTGTGTCTATGGC 58.902 55.000 0.00 0.00 39.33 4.40
2719 2749 0.323360 TGCCCTTTGTGTCTATGGCC 60.323 55.000 0.00 0.00 38.10 5.36
2720 2750 1.037579 GCCCTTTGTGTCTATGGCCC 61.038 60.000 0.00 0.00 32.74 5.80
2721 2751 0.331278 CCCTTTGTGTCTATGGCCCA 59.669 55.000 0.00 0.00 0.00 5.36
2722 2752 1.063717 CCCTTTGTGTCTATGGCCCAT 60.064 52.381 0.00 0.00 0.00 4.00
2723 2753 2.026641 CCTTTGTGTCTATGGCCCATG 58.973 52.381 6.46 0.00 0.00 3.66
2724 2754 2.026641 CTTTGTGTCTATGGCCCATGG 58.973 52.381 6.46 4.14 0.00 3.66
2725 2755 0.258484 TTGTGTCTATGGCCCATGGG 59.742 55.000 27.87 27.87 38.57 4.00
2735 2765 3.903783 CCCATGGGCTACAACACG 58.096 61.111 20.41 0.00 0.00 4.49
2736 2766 1.748879 CCCATGGGCTACAACACGG 60.749 63.158 20.41 0.00 0.00 4.94
2737 2767 1.002624 CCATGGGCTACAACACGGT 60.003 57.895 2.85 0.00 0.00 4.83
2738 2768 1.305219 CCATGGGCTACAACACGGTG 61.305 60.000 2.85 6.58 0.00 4.94
2739 2769 1.674322 ATGGGCTACAACACGGTGC 60.674 57.895 8.30 0.00 0.00 5.01
2740 2770 2.281208 GGGCTACAACACGGTGCA 60.281 61.111 8.30 0.00 0.00 4.57
2741 2771 2.325082 GGGCTACAACACGGTGCAG 61.325 63.158 8.30 3.38 0.00 4.41
2742 2772 1.597027 GGCTACAACACGGTGCAGT 60.597 57.895 8.30 9.50 0.00 4.40
2743 2773 1.569493 GCTACAACACGGTGCAGTG 59.431 57.895 8.30 6.77 46.83 3.66
2744 2774 1.569493 CTACAACACGGTGCAGTGC 59.431 57.895 8.58 8.58 45.45 4.40
2745 2775 2.158058 CTACAACACGGTGCAGTGCG 62.158 60.000 11.20 0.00 45.45 5.34
2746 2776 2.630592 TACAACACGGTGCAGTGCGA 62.631 55.000 11.20 0.00 45.45 5.10
2747 2777 3.269347 AACACGGTGCAGTGCGAC 61.269 61.111 11.20 9.67 45.45 5.19
2748 2778 3.733344 AACACGGTGCAGTGCGACT 62.733 57.895 11.20 0.00 45.45 4.18
2749 2779 3.406361 CACGGTGCAGTGCGACTC 61.406 66.667 11.20 0.85 35.17 3.36
2756 2786 4.803426 CAGTGCGACTCGGCCTCC 62.803 72.222 0.00 0.00 0.00 4.30
2766 2796 4.976925 CGGCCTCCGCATGCCTAG 62.977 72.222 13.15 9.52 45.71 3.02
2768 2798 4.552365 GCCTCCGCATGCCTAGCA 62.552 66.667 13.15 0.00 44.86 3.49
2769 2799 2.590007 CCTCCGCATGCCTAGCAC 60.590 66.667 13.15 0.00 43.04 4.40
2770 2800 2.503061 CTCCGCATGCCTAGCACT 59.497 61.111 13.15 0.00 43.04 4.40
2771 2801 1.593750 CTCCGCATGCCTAGCACTC 60.594 63.158 13.15 0.00 43.04 3.51
2772 2802 2.025767 CTCCGCATGCCTAGCACTCT 62.026 60.000 13.15 0.00 43.04 3.24
2773 2803 1.593750 CCGCATGCCTAGCACTCTC 60.594 63.158 13.15 0.00 43.04 3.20
2774 2804 1.142531 CGCATGCCTAGCACTCTCA 59.857 57.895 13.15 0.00 43.04 3.27
2775 2805 0.249784 CGCATGCCTAGCACTCTCAT 60.250 55.000 13.15 0.00 43.04 2.90
2776 2806 1.227639 GCATGCCTAGCACTCTCATG 58.772 55.000 6.36 0.00 43.04 3.07
2777 2807 1.880271 CATGCCTAGCACTCTCATGG 58.120 55.000 0.00 0.00 43.04 3.66
2778 2808 0.108207 ATGCCTAGCACTCTCATGGC 59.892 55.000 0.00 0.00 43.04 4.40
2779 2809 1.593750 GCCTAGCACTCTCATGGCG 60.594 63.158 0.00 0.00 0.00 5.69
2780 2810 1.068753 CCTAGCACTCTCATGGCGG 59.931 63.158 0.00 0.00 0.00 6.13
2781 2811 1.068753 CTAGCACTCTCATGGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
2782 2812 2.985512 CTAGCACTCTCATGGCGGGC 62.986 65.000 0.00 0.00 0.00 6.13
2783 2813 4.783621 GCACTCTCATGGCGGGCA 62.784 66.667 6.74 6.74 0.00 5.36
2784 2814 2.046023 CACTCTCATGGCGGGCAA 60.046 61.111 8.78 0.00 0.00 4.52
2785 2815 2.110967 CACTCTCATGGCGGGCAAG 61.111 63.158 8.78 4.00 0.00 4.01
2786 2816 2.293318 ACTCTCATGGCGGGCAAGA 61.293 57.895 8.78 9.00 0.00 3.02
2787 2817 1.817099 CTCTCATGGCGGGCAAGAC 60.817 63.158 8.78 0.00 0.00 3.01
2788 2818 3.197790 CTCATGGCGGGCAAGACG 61.198 66.667 8.78 0.38 0.00 4.18
2789 2819 4.776322 TCATGGCGGGCAAGACGG 62.776 66.667 8.78 0.00 0.00 4.79
2798 2828 3.056328 GCAAGACGGGCCTTGGAC 61.056 66.667 0.84 0.00 42.73 4.02
2799 2829 2.750350 CAAGACGGGCCTTGGACT 59.250 61.111 0.84 0.00 39.74 3.85
2800 2830 1.376037 CAAGACGGGCCTTGGACTC 60.376 63.158 0.84 0.00 39.74 3.36
2801 2831 2.943978 AAGACGGGCCTTGGACTCG 61.944 63.158 0.84 0.00 0.00 4.18
2802 2832 4.452733 GACGGGCCTTGGACTCGG 62.453 72.222 0.84 0.00 0.00 4.63
2804 2834 4.148825 CGGGCCTTGGACTCGGAG 62.149 72.222 0.84 2.83 0.00 4.63
2805 2835 4.475135 GGGCCTTGGACTCGGAGC 62.475 72.222 0.84 0.00 0.00 4.70
2806 2836 4.475135 GGCCTTGGACTCGGAGCC 62.475 72.222 4.58 8.12 0.00 4.70
2807 2837 4.475135 GCCTTGGACTCGGAGCCC 62.475 72.222 3.03 3.03 0.00 5.19
2818 2848 4.147701 GGAGCCCGACATTGATGG 57.852 61.111 0.00 0.00 0.00 3.51
2819 2849 1.526917 GGAGCCCGACATTGATGGG 60.527 63.158 11.96 11.96 46.22 4.00
2820 2850 1.526887 GAGCCCGACATTGATGGGA 59.473 57.895 18.20 0.00 46.41 4.37
2821 2851 0.815615 GAGCCCGACATTGATGGGAC 60.816 60.000 18.20 11.11 46.41 4.46
2822 2852 1.077787 GCCCGACATTGATGGGACA 60.078 57.895 18.20 0.00 46.41 4.02
2834 2864 4.494515 GGGACAAGGACCCAACAC 57.505 61.111 0.00 0.00 46.05 3.32
2835 2865 1.534697 GGGACAAGGACCCAACACA 59.465 57.895 0.00 0.00 46.05 3.72
2836 2866 0.112412 GGGACAAGGACCCAACACAT 59.888 55.000 0.00 0.00 46.05 3.21
2837 2867 1.247567 GGACAAGGACCCAACACATG 58.752 55.000 0.00 0.00 0.00 3.21
2847 2877 2.153366 CCAACACATGGGTTTTGCTC 57.847 50.000 11.58 0.00 46.27 4.26
2848 2878 1.602668 CCAACACATGGGTTTTGCTCG 60.603 52.381 11.58 0.00 46.27 5.03
2849 2879 0.673437 AACACATGGGTTTTGCTCGG 59.327 50.000 7.75 0.00 0.00 4.63
2850 2880 1.080569 CACATGGGTTTTGCTCGGC 60.081 57.895 0.00 0.00 0.00 5.54
2851 2881 2.275380 ACATGGGTTTTGCTCGGCC 61.275 57.895 0.00 0.00 0.00 6.13
2852 2882 3.061848 ATGGGTTTTGCTCGGCCG 61.062 61.111 22.12 22.12 0.00 6.13
2855 2885 4.404654 GGTTTTGCTCGGCCGCTG 62.405 66.667 23.51 17.05 0.00 5.18
2856 2886 3.660111 GTTTTGCTCGGCCGCTGT 61.660 61.111 23.51 0.00 0.00 4.40
2857 2887 3.353836 TTTTGCTCGGCCGCTGTC 61.354 61.111 23.51 9.56 0.00 3.51
2868 2898 4.303853 CGCTGTCGGTAGATTCGG 57.696 61.111 0.00 0.00 0.00 4.30
2869 2899 1.944676 CGCTGTCGGTAGATTCGGC 60.945 63.158 0.00 0.00 0.00 5.54
2870 2900 1.437986 GCTGTCGGTAGATTCGGCT 59.562 57.895 0.00 0.00 32.95 5.52
2871 2901 0.179108 GCTGTCGGTAGATTCGGCTT 60.179 55.000 0.00 0.00 32.95 4.35
2872 2902 1.739371 GCTGTCGGTAGATTCGGCTTT 60.739 52.381 0.00 0.00 32.95 3.51
2873 2903 1.927174 CTGTCGGTAGATTCGGCTTTG 59.073 52.381 0.00 0.00 32.95 2.77
2874 2904 1.287425 GTCGGTAGATTCGGCTTTGG 58.713 55.000 0.00 0.00 0.00 3.28
2875 2905 1.134907 GTCGGTAGATTCGGCTTTGGA 60.135 52.381 0.00 0.00 0.00 3.53
2876 2906 1.136305 TCGGTAGATTCGGCTTTGGAG 59.864 52.381 0.00 0.00 0.00 3.86
2894 2924 3.248171 CGAACACGCGCCTAGAGC 61.248 66.667 5.73 0.00 38.52 4.09
2895 2925 2.886124 GAACACGCGCCTAGAGCC 60.886 66.667 5.73 0.00 38.78 4.70
2896 2926 3.642778 GAACACGCGCCTAGAGCCA 62.643 63.158 5.73 0.00 38.78 4.75
2897 2927 3.649277 AACACGCGCCTAGAGCCAG 62.649 63.158 5.73 0.00 38.78 4.85
2903 2933 4.228567 GCCTAGAGCCAGCCGGAC 62.229 72.222 5.05 0.00 34.35 4.79
2904 2934 3.905678 CCTAGAGCCAGCCGGACG 61.906 72.222 5.05 0.00 0.00 4.79
2905 2935 2.829003 CTAGAGCCAGCCGGACGA 60.829 66.667 5.05 0.00 0.00 4.20
2906 2936 3.127352 CTAGAGCCAGCCGGACGAC 62.127 68.421 5.05 0.00 0.00 4.34
2907 2937 3.640257 TAGAGCCAGCCGGACGACT 62.640 63.158 5.05 0.00 0.00 4.18
2908 2938 2.261430 TAGAGCCAGCCGGACGACTA 62.261 60.000 5.05 0.00 0.00 2.59
2909 2939 2.442272 AGCCAGCCGGACGACTAT 60.442 61.111 5.05 0.00 0.00 2.12
2910 2940 2.027751 GCCAGCCGGACGACTATC 59.972 66.667 5.05 0.00 0.00 2.08
2911 2941 2.491022 GCCAGCCGGACGACTATCT 61.491 63.158 5.05 0.00 0.00 1.98
2912 2942 1.655329 CCAGCCGGACGACTATCTC 59.345 63.158 5.05 0.00 0.00 2.75
2913 2943 1.655329 CAGCCGGACGACTATCTCC 59.345 63.158 5.05 0.00 0.00 3.71
2914 2944 0.820074 CAGCCGGACGACTATCTCCT 60.820 60.000 5.05 0.00 0.00 3.69
2915 2945 0.535553 AGCCGGACGACTATCTCCTC 60.536 60.000 5.05 0.00 0.00 3.71
2916 2946 1.517210 GCCGGACGACTATCTCCTCC 61.517 65.000 5.05 0.00 0.00 4.30
2917 2947 0.108963 CCGGACGACTATCTCCTCCT 59.891 60.000 0.00 0.00 0.00 3.69
2918 2948 1.515081 CGGACGACTATCTCCTCCTC 58.485 60.000 0.00 0.00 0.00 3.71
2919 2949 1.515081 GGACGACTATCTCCTCCTCG 58.485 60.000 0.00 0.00 0.00 4.63
2920 2950 1.202675 GGACGACTATCTCCTCCTCGT 60.203 57.143 0.00 0.00 40.17 4.18
2921 2951 2.563702 GACGACTATCTCCTCCTCGTT 58.436 52.381 0.00 0.00 37.69 3.85
2922 2952 2.288458 GACGACTATCTCCTCCTCGTTG 59.712 54.545 0.00 0.00 37.69 4.10
2923 2953 1.604755 CGACTATCTCCTCCTCGTTGG 59.395 57.143 0.00 0.00 37.10 3.77
2924 2954 2.657143 GACTATCTCCTCCTCGTTGGT 58.343 52.381 0.00 0.00 37.07 3.67
2925 2955 2.359531 GACTATCTCCTCCTCGTTGGTG 59.640 54.545 0.00 0.00 37.07 4.17
2926 2956 1.067821 CTATCTCCTCCTCGTTGGTGC 59.932 57.143 0.00 0.00 37.07 5.01
2927 2957 0.904865 ATCTCCTCCTCGTTGGTGCA 60.905 55.000 0.00 0.00 37.07 4.57
2928 2958 1.079543 CTCCTCCTCGTTGGTGCAG 60.080 63.158 0.00 0.00 37.07 4.41
2929 2959 2.743928 CCTCCTCGTTGGTGCAGC 60.744 66.667 9.47 9.47 37.07 5.25
2930 2960 3.114616 CTCCTCGTTGGTGCAGCG 61.115 66.667 11.91 2.51 39.31 5.18
2931 2961 4.680237 TCCTCGTTGGTGCAGCGG 62.680 66.667 11.91 5.92 38.53 5.52
2932 2962 4.680237 CCTCGTTGGTGCAGCGGA 62.680 66.667 11.91 7.61 38.53 5.54
2933 2963 3.414700 CTCGTTGGTGCAGCGGAC 61.415 66.667 11.91 11.39 38.53 4.79
2948 2978 3.507290 GACGGGGTCCTAGTCGAC 58.493 66.667 7.70 7.70 0.00 4.20
2949 2979 2.437359 ACGGGGTCCTAGTCGACG 60.437 66.667 10.46 0.00 33.30 5.12
2950 2980 3.207669 CGGGGTCCTAGTCGACGG 61.208 72.222 10.46 6.53 33.30 4.79
2951 2981 2.273449 GGGGTCCTAGTCGACGGA 59.727 66.667 10.46 9.08 33.30 4.69
2952 2982 1.152798 GGGGTCCTAGTCGACGGAT 60.153 63.158 14.25 0.00 33.30 4.18
2953 2983 1.171549 GGGGTCCTAGTCGACGGATC 61.172 65.000 14.25 13.53 33.30 3.36
2954 2984 1.171549 GGGTCCTAGTCGACGGATCC 61.172 65.000 21.56 21.56 42.98 3.36
2955 2985 1.505477 GGTCCTAGTCGACGGATCCG 61.505 65.000 32.20 32.20 46.03 4.18
2956 2986 1.227764 TCCTAGTCGACGGATCCGG 60.228 63.158 35.87 20.49 44.69 5.14
2957 2987 1.227764 CCTAGTCGACGGATCCGGA 60.228 63.158 35.87 22.46 44.69 5.14
2958 2988 1.229315 CCTAGTCGACGGATCCGGAG 61.229 65.000 35.87 27.67 44.69 4.63
2959 2989 0.532417 CTAGTCGACGGATCCGGAGT 60.532 60.000 35.87 27.05 44.69 3.85
2960 2990 0.107508 TAGTCGACGGATCCGGAGTT 60.108 55.000 35.87 17.05 44.69 3.01
2961 2991 1.226603 GTCGACGGATCCGGAGTTG 60.227 63.158 35.87 19.93 44.69 3.16
2962 2992 2.582498 CGACGGATCCGGAGTTGC 60.582 66.667 35.87 16.92 44.69 4.17
2963 2993 2.202892 GACGGATCCGGAGTTGCC 60.203 66.667 35.87 13.01 44.69 4.52
2964 2994 3.000819 ACGGATCCGGAGTTGCCA 61.001 61.111 35.87 0.00 44.69 4.92
2965 2995 2.267642 CGGATCCGGAGTTGCCAA 59.732 61.111 26.95 0.00 35.94 4.52
2966 2996 1.376683 CGGATCCGGAGTTGCCAAA 60.377 57.895 26.95 0.00 35.94 3.28
2967 2997 1.644786 CGGATCCGGAGTTGCCAAAC 61.645 60.000 26.95 0.00 35.94 2.93
2975 3005 3.421567 AGTTGCCAAACTCAGACCC 57.578 52.632 0.00 0.00 43.34 4.46
2976 3006 0.535102 AGTTGCCAAACTCAGACCCG 60.535 55.000 0.00 0.00 43.34 5.28
2977 3007 0.818040 GTTGCCAAACTCAGACCCGT 60.818 55.000 0.00 0.00 33.22 5.28
2978 3008 0.106918 TTGCCAAACTCAGACCCGTT 60.107 50.000 0.00 0.00 0.00 4.44
2979 3009 0.817634 TGCCAAACTCAGACCCGTTG 60.818 55.000 0.00 0.00 0.00 4.10
2980 3010 1.949257 CCAAACTCAGACCCGTTGC 59.051 57.895 0.00 0.00 0.00 4.17
2981 3011 1.515521 CCAAACTCAGACCCGTTGCC 61.516 60.000 0.00 0.00 0.00 4.52
2982 3012 1.228154 AAACTCAGACCCGTTGCCC 60.228 57.895 0.00 0.00 0.00 5.36
2983 3013 1.990160 AAACTCAGACCCGTTGCCCA 61.990 55.000 0.00 0.00 0.00 5.36
2984 3014 2.358737 CTCAGACCCGTTGCCCAC 60.359 66.667 0.00 0.00 0.00 4.61
2985 3015 3.901797 CTCAGACCCGTTGCCCACC 62.902 68.421 0.00 0.00 0.00 4.61
2986 3016 4.263572 CAGACCCGTTGCCCACCA 62.264 66.667 0.00 0.00 0.00 4.17
2987 3017 3.256960 AGACCCGTTGCCCACCAT 61.257 61.111 0.00 0.00 0.00 3.55
2988 3018 3.061848 GACCCGTTGCCCACCATG 61.062 66.667 0.00 0.00 0.00 3.66
2989 3019 3.860930 GACCCGTTGCCCACCATGT 62.861 63.158 0.00 0.00 0.00 3.21
2990 3020 3.061848 CCCGTTGCCCACCATGTC 61.062 66.667 0.00 0.00 0.00 3.06
2991 3021 2.282110 CCGTTGCCCACCATGTCA 60.282 61.111 0.00 0.00 0.00 3.58
2992 3022 1.900981 CCGTTGCCCACCATGTCAA 60.901 57.895 0.00 0.00 0.00 3.18
2993 3023 1.459455 CCGTTGCCCACCATGTCAAA 61.459 55.000 0.00 0.00 0.00 2.69
2994 3024 0.387202 CGTTGCCCACCATGTCAAAA 59.613 50.000 0.00 0.00 0.00 2.44
2995 3025 1.202463 CGTTGCCCACCATGTCAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
2996 3026 2.547642 CGTTGCCCACCATGTCAAAAAT 60.548 45.455 0.00 0.00 0.00 1.82
2997 3027 2.807392 GTTGCCCACCATGTCAAAAATG 59.193 45.455 0.00 0.00 0.00 2.32
2998 3028 2.323599 TGCCCACCATGTCAAAAATGA 58.676 42.857 0.00 0.00 0.00 2.57
2999 3029 2.905085 TGCCCACCATGTCAAAAATGAT 59.095 40.909 0.00 0.00 0.00 2.45
3000 3030 3.055963 TGCCCACCATGTCAAAAATGATC 60.056 43.478 0.00 0.00 0.00 2.92
3001 3031 3.055963 GCCCACCATGTCAAAAATGATCA 60.056 43.478 0.00 0.00 0.00 2.92
3002 3032 4.563168 GCCCACCATGTCAAAAATGATCAA 60.563 41.667 0.00 0.00 0.00 2.57
3003 3033 4.931002 CCCACCATGTCAAAAATGATCAAC 59.069 41.667 0.00 0.00 0.00 3.18
3004 3034 4.622313 CCACCATGTCAAAAATGATCAACG 59.378 41.667 0.00 0.00 0.00 4.10
3005 3035 5.459768 CACCATGTCAAAAATGATCAACGA 58.540 37.500 0.00 0.00 0.00 3.85
3006 3036 6.094719 CACCATGTCAAAAATGATCAACGAT 58.905 36.000 0.00 0.00 0.00 3.73
3007 3037 6.252015 CACCATGTCAAAAATGATCAACGATC 59.748 38.462 0.00 0.00 39.31 3.69
3015 3045 0.459899 TGATCAACGATCACCGGAGG 59.540 55.000 9.46 0.00 43.11 4.30
3016 3046 0.744874 GATCAACGATCACCGGAGGA 59.255 55.000 9.46 5.59 44.44 3.71
3017 3047 1.269309 GATCAACGATCACCGGAGGAG 60.269 57.143 9.46 0.00 44.44 3.69
3039 3069 4.767255 GCTGGGCGGAGTGGACTG 62.767 72.222 0.00 0.00 0.00 3.51
3040 3070 4.087892 CTGGGCGGAGTGGACTGG 62.088 72.222 0.00 0.00 0.00 4.00
3041 3071 4.631740 TGGGCGGAGTGGACTGGA 62.632 66.667 0.00 0.00 0.00 3.86
3042 3072 3.319198 GGGCGGAGTGGACTGGAA 61.319 66.667 0.00 0.00 0.00 3.53
3043 3073 2.266055 GGCGGAGTGGACTGGAAG 59.734 66.667 0.00 0.00 42.29 3.46
3057 3087 3.515330 CTGGAAGTGGAATGAAATGGC 57.485 47.619 0.00 0.00 0.00 4.40
3058 3088 2.827322 CTGGAAGTGGAATGAAATGGCA 59.173 45.455 0.00 0.00 0.00 4.92
3059 3089 3.237746 TGGAAGTGGAATGAAATGGCAA 58.762 40.909 0.00 0.00 0.00 4.52
3060 3090 3.645212 TGGAAGTGGAATGAAATGGCAAA 59.355 39.130 0.00 0.00 0.00 3.68
3061 3091 4.286549 TGGAAGTGGAATGAAATGGCAAAT 59.713 37.500 0.00 0.00 0.00 2.32
3062 3092 5.483231 TGGAAGTGGAATGAAATGGCAAATA 59.517 36.000 0.00 0.00 0.00 1.40
3063 3093 6.156602 TGGAAGTGGAATGAAATGGCAAATAT 59.843 34.615 0.00 0.00 0.00 1.28
3064 3094 6.480981 GGAAGTGGAATGAAATGGCAAATATG 59.519 38.462 0.00 0.00 0.00 1.78
3065 3095 5.920903 AGTGGAATGAAATGGCAAATATGG 58.079 37.500 0.00 0.00 0.00 2.74
3078 3108 5.126396 GCAAATATGGCTAGGATTTGGTC 57.874 43.478 16.83 3.63 39.75 4.02
3079 3109 4.584325 GCAAATATGGCTAGGATTTGGTCA 59.416 41.667 16.83 0.00 39.75 4.02
3080 3110 5.278660 GCAAATATGGCTAGGATTTGGTCAG 60.279 44.000 16.83 0.00 39.75 3.51
3081 3111 4.647564 ATATGGCTAGGATTTGGTCAGG 57.352 45.455 0.00 0.00 0.00 3.86
3082 3112 0.918983 TGGCTAGGATTTGGTCAGGG 59.081 55.000 0.00 0.00 0.00 4.45
3083 3113 0.183731 GGCTAGGATTTGGTCAGGGG 59.816 60.000 0.00 0.00 0.00 4.79
3084 3114 0.919710 GCTAGGATTTGGTCAGGGGT 59.080 55.000 0.00 0.00 0.00 4.95
3085 3115 2.124411 GCTAGGATTTGGTCAGGGGTA 58.876 52.381 0.00 0.00 0.00 3.69
3086 3116 2.158798 GCTAGGATTTGGTCAGGGGTAC 60.159 54.545 0.00 0.00 0.00 3.34
3087 3117 2.053747 AGGATTTGGTCAGGGGTACA 57.946 50.000 0.00 0.00 0.00 2.90
3088 3118 2.354328 AGGATTTGGTCAGGGGTACAA 58.646 47.619 0.00 0.00 0.00 2.41
3089 3119 2.719705 AGGATTTGGTCAGGGGTACAAA 59.280 45.455 0.00 0.00 37.25 2.83
3090 3120 3.336694 AGGATTTGGTCAGGGGTACAAAT 59.663 43.478 0.00 0.00 43.80 2.32
3091 3121 4.542525 AGGATTTGGTCAGGGGTACAAATA 59.457 41.667 0.00 0.00 41.90 1.40
3092 3122 5.195756 AGGATTTGGTCAGGGGTACAAATAT 59.804 40.000 0.00 0.00 41.90 1.28
3093 3123 5.301805 GGATTTGGTCAGGGGTACAAATATG 59.698 44.000 0.00 0.00 41.90 1.78
3094 3124 3.943671 TGGTCAGGGGTACAAATATGG 57.056 47.619 0.00 0.00 0.00 2.74
3095 3125 3.465832 TGGTCAGGGGTACAAATATGGA 58.534 45.455 0.00 0.00 0.00 3.41
3096 3126 3.201266 TGGTCAGGGGTACAAATATGGAC 59.799 47.826 0.00 0.00 39.90 4.02
3097 3127 3.201266 GGTCAGGGGTACAAATATGGACA 59.799 47.826 0.00 0.00 42.67 4.02
3098 3128 4.141251 GGTCAGGGGTACAAATATGGACAT 60.141 45.833 0.00 0.00 42.67 3.06
3099 3129 4.821805 GTCAGGGGTACAAATATGGACATG 59.178 45.833 0.00 0.00 42.67 3.21
3100 3130 4.724293 TCAGGGGTACAAATATGGACATGA 59.276 41.667 0.00 0.00 42.67 3.07
3101 3131 5.372363 TCAGGGGTACAAATATGGACATGAT 59.628 40.000 0.00 0.00 42.67 2.45
3102 3132 6.560687 TCAGGGGTACAAATATGGACATGATA 59.439 38.462 0.00 0.00 42.67 2.15
3103 3133 7.239563 TCAGGGGTACAAATATGGACATGATAT 59.760 37.037 0.00 0.00 42.67 1.63
3104 3134 8.548025 CAGGGGTACAAATATGGACATGATATA 58.452 37.037 0.00 0.00 42.67 0.86
3105 3135 9.296463 AGGGGTACAAATATGGACATGATATAT 57.704 33.333 0.00 0.00 42.67 0.86
3106 3136 9.342308 GGGGTACAAATATGGACATGATATATG 57.658 37.037 0.00 0.00 42.67 1.78
3107 3137 9.905713 GGGTACAAATATGGACATGATATATGT 57.094 33.333 0.00 0.00 42.67 2.29
3110 3140 8.812513 ACAAATATGGACATGATATATGTGGG 57.187 34.615 0.00 0.00 29.96 4.61
3111 3141 7.835682 ACAAATATGGACATGATATATGTGGGG 59.164 37.037 0.00 0.00 29.96 4.96
3112 3142 7.529534 AATATGGACATGATATATGTGGGGT 57.470 36.000 0.00 0.00 31.52 4.95
3113 3143 4.908601 TGGACATGATATATGTGGGGTC 57.091 45.455 0.00 0.00 31.52 4.46
3114 3144 3.260632 TGGACATGATATATGTGGGGTCG 59.739 47.826 0.00 0.00 31.52 4.79
3115 3145 3.513912 GGACATGATATATGTGGGGTCGA 59.486 47.826 0.00 0.00 31.52 4.20
3116 3146 4.020573 GGACATGATATATGTGGGGTCGAA 60.021 45.833 0.00 0.00 31.52 3.71
3117 3147 5.152623 ACATGATATATGTGGGGTCGAAG 57.847 43.478 0.00 0.00 0.00 3.79
3118 3148 4.593206 ACATGATATATGTGGGGTCGAAGT 59.407 41.667 0.00 0.00 0.00 3.01
3119 3149 4.600692 TGATATATGTGGGGTCGAAGTG 57.399 45.455 0.00 0.00 0.00 3.16
3120 3150 3.323691 TGATATATGTGGGGTCGAAGTGG 59.676 47.826 0.00 0.00 0.00 4.00
3121 3151 0.837272 ATATGTGGGGTCGAAGTGGG 59.163 55.000 0.00 0.00 0.00 4.61
3122 3152 0.252330 TATGTGGGGTCGAAGTGGGA 60.252 55.000 0.00 0.00 0.00 4.37
3123 3153 1.838073 ATGTGGGGTCGAAGTGGGAC 61.838 60.000 0.00 0.00 0.00 4.46
3124 3154 3.307906 TGGGGTCGAAGTGGGACG 61.308 66.667 0.00 0.00 35.24 4.79
3125 3155 4.078516 GGGGTCGAAGTGGGACGG 62.079 72.222 0.00 0.00 35.24 4.79
3126 3156 3.308705 GGGTCGAAGTGGGACGGT 61.309 66.667 0.00 0.00 35.24 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
279 280 7.189794 TCCTGAACTCTTTTCCTCCTCTTATA 58.810 38.462 0.00 0.00 0.00 0.98
289 290 4.202367 TGAAGGACTCCTGAACTCTTTTCC 60.202 45.833 0.00 0.00 32.13 3.13
592 594 4.434195 ACCATTCCAAAATATGTTGGGGT 58.566 39.130 22.25 18.35 46.89 4.95
657 659 6.592870 AGTAGAGTCCACTGTTTTAAGCTTT 58.407 36.000 3.20 0.00 0.00 3.51
691 693 3.643792 AGGAAAACAGTGACAGCTCTAGT 59.356 43.478 0.00 0.00 0.00 2.57
941 944 0.608582 AGCACGTTCTACTCCCGTCT 60.609 55.000 0.00 0.00 31.46 4.18
1196 1217 4.038402 CCAACTCAATCTCCAGCTTGTTTT 59.962 41.667 0.00 0.00 0.00 2.43
1418 1441 0.452987 CGCATTGCAGCCTACACATT 59.547 50.000 9.69 0.00 0.00 2.71
1684 1709 6.677913 ACCTGATTGTACATTGCAAGTAAAC 58.322 36.000 4.94 1.23 0.00 2.01
1954 1979 6.707161 AGCTTTATTTCTTTTTGATGCAGCAA 59.293 30.769 14.49 14.49 0.00 3.91
2094 2123 1.710249 CAACAACGATGCAAAAGCTCG 59.290 47.619 5.16 5.16 38.34 5.03
2101 2130 1.659233 CCAGCCAACAACGATGCAA 59.341 52.632 0.00 0.00 0.00 4.08
2252 2281 7.218228 ACATTGTTCAGATAACAAAGCATGA 57.782 32.000 7.33 0.00 42.57 3.07
2475 2505 2.820197 GCTTTTTGAGGAATTCGAGGGT 59.180 45.455 0.00 0.00 0.00 4.34
2476 2506 3.084786 AGCTTTTTGAGGAATTCGAGGG 58.915 45.455 0.00 0.00 0.00 4.30
2477 2507 4.216257 TCAAGCTTTTTGAGGAATTCGAGG 59.784 41.667 0.00 0.00 0.00 4.63
2478 2508 5.362556 TCAAGCTTTTTGAGGAATTCGAG 57.637 39.130 0.00 0.00 0.00 4.04
2479 2509 5.964958 ATCAAGCTTTTTGAGGAATTCGA 57.035 34.783 0.00 0.00 0.00 3.71
2480 2510 6.385033 AGAATCAAGCTTTTTGAGGAATTCG 58.615 36.000 0.00 0.00 0.00 3.34
2481 2511 8.734386 TCTAGAATCAAGCTTTTTGAGGAATTC 58.266 33.333 0.00 0.00 0.00 2.17
2482 2512 8.641498 TCTAGAATCAAGCTTTTTGAGGAATT 57.359 30.769 0.00 0.00 0.00 2.17
2483 2513 8.820153 ATCTAGAATCAAGCTTTTTGAGGAAT 57.180 30.769 0.00 0.00 0.00 3.01
2484 2514 8.517878 CAATCTAGAATCAAGCTTTTTGAGGAA 58.482 33.333 0.00 0.00 0.00 3.36
2485 2515 7.884877 TCAATCTAGAATCAAGCTTTTTGAGGA 59.115 33.333 0.00 0.00 0.00 3.71
2486 2516 8.048534 TCAATCTAGAATCAAGCTTTTTGAGG 57.951 34.615 0.00 0.00 0.00 3.86
2487 2517 9.903682 TTTCAATCTAGAATCAAGCTTTTTGAG 57.096 29.630 0.00 0.00 0.00 3.02
2522 2552 8.458843 CCTCAATTACTTGTTCCGATTTTACAT 58.541 33.333 0.00 0.00 33.87 2.29
2523 2553 7.662258 TCCTCAATTACTTGTTCCGATTTTACA 59.338 33.333 0.00 0.00 33.87 2.41
2524 2554 8.036273 TCCTCAATTACTTGTTCCGATTTTAC 57.964 34.615 0.00 0.00 33.87 2.01
2525 2555 8.098286 TCTCCTCAATTACTTGTTCCGATTTTA 58.902 33.333 0.00 0.00 33.87 1.52
2526 2556 6.940298 TCTCCTCAATTACTTGTTCCGATTTT 59.060 34.615 0.00 0.00 33.87 1.82
2527 2557 6.472887 TCTCCTCAATTACTTGTTCCGATTT 58.527 36.000 0.00 0.00 33.87 2.17
2528 2558 6.049955 TCTCCTCAATTACTTGTTCCGATT 57.950 37.500 0.00 0.00 33.87 3.34
2529 2559 5.677319 TCTCCTCAATTACTTGTTCCGAT 57.323 39.130 0.00 0.00 33.87 4.18
2530 2560 5.677319 ATCTCCTCAATTACTTGTTCCGA 57.323 39.130 0.00 0.00 33.87 4.55
2531 2561 5.005779 CGAATCTCCTCAATTACTTGTTCCG 59.994 44.000 0.00 0.00 33.87 4.30
2532 2562 5.875359 ACGAATCTCCTCAATTACTTGTTCC 59.125 40.000 0.00 0.00 33.87 3.62
2533 2563 6.673316 GCACGAATCTCCTCAATTACTTGTTC 60.673 42.308 0.00 0.00 33.87 3.18
2534 2564 5.122396 GCACGAATCTCCTCAATTACTTGTT 59.878 40.000 0.00 0.00 33.87 2.83
2535 2565 4.631813 GCACGAATCTCCTCAATTACTTGT 59.368 41.667 0.00 0.00 33.87 3.16
2536 2566 4.034510 GGCACGAATCTCCTCAATTACTTG 59.965 45.833 0.00 0.00 0.00 3.16
2537 2567 4.080863 AGGCACGAATCTCCTCAATTACTT 60.081 41.667 0.00 0.00 0.00 2.24
2538 2568 3.452627 AGGCACGAATCTCCTCAATTACT 59.547 43.478 0.00 0.00 0.00 2.24
2539 2569 3.557595 CAGGCACGAATCTCCTCAATTAC 59.442 47.826 0.00 0.00 0.00 1.89
2540 2570 3.450817 TCAGGCACGAATCTCCTCAATTA 59.549 43.478 0.00 0.00 0.00 1.40
2541 2571 2.237143 TCAGGCACGAATCTCCTCAATT 59.763 45.455 0.00 0.00 0.00 2.32
2542 2572 1.833630 TCAGGCACGAATCTCCTCAAT 59.166 47.619 0.00 0.00 0.00 2.57
2543 2573 1.266178 TCAGGCACGAATCTCCTCAA 58.734 50.000 0.00 0.00 0.00 3.02
2544 2574 1.266178 TTCAGGCACGAATCTCCTCA 58.734 50.000 0.00 0.00 0.00 3.86
2545 2575 2.208431 CATTCAGGCACGAATCTCCTC 58.792 52.381 0.00 0.00 33.27 3.71
2546 2576 1.556911 ACATTCAGGCACGAATCTCCT 59.443 47.619 0.00 0.00 33.27 3.69
2547 2577 2.029838 ACATTCAGGCACGAATCTCC 57.970 50.000 0.00 0.00 33.27 3.71
2548 2578 3.307242 GTGTACATTCAGGCACGAATCTC 59.693 47.826 0.00 0.00 33.27 2.75
2549 2579 3.262420 GTGTACATTCAGGCACGAATCT 58.738 45.455 0.00 0.00 33.27 2.40
2550 2580 3.658351 GTGTACATTCAGGCACGAATC 57.342 47.619 0.00 0.00 33.27 2.52
2555 2585 0.165944 GCACGTGTACATTCAGGCAC 59.834 55.000 18.38 0.00 0.00 5.01
2556 2586 0.034756 AGCACGTGTACATTCAGGCA 59.965 50.000 18.38 0.00 0.00 4.75
2557 2587 0.721718 GAGCACGTGTACATTCAGGC 59.278 55.000 18.38 0.00 0.00 4.85
2558 2588 2.370281 AGAGCACGTGTACATTCAGG 57.630 50.000 18.38 0.00 0.00 3.86
2559 2589 4.504461 GGATTAGAGCACGTGTACATTCAG 59.496 45.833 18.38 0.00 0.00 3.02
2560 2590 4.159693 AGGATTAGAGCACGTGTACATTCA 59.840 41.667 18.38 0.00 0.00 2.57
2561 2591 4.683832 AGGATTAGAGCACGTGTACATTC 58.316 43.478 18.38 7.59 0.00 2.67
2562 2592 4.737855 AGGATTAGAGCACGTGTACATT 57.262 40.909 18.38 1.62 0.00 2.71
2563 2593 4.737855 AAGGATTAGAGCACGTGTACAT 57.262 40.909 18.38 3.74 0.00 2.29
2564 2594 4.021807 TCAAAGGATTAGAGCACGTGTACA 60.022 41.667 18.38 0.00 0.00 2.90
2565 2595 4.491676 TCAAAGGATTAGAGCACGTGTAC 58.508 43.478 18.38 11.42 0.00 2.90
2566 2596 4.744570 CTCAAAGGATTAGAGCACGTGTA 58.255 43.478 18.38 0.00 0.00 2.90
2567 2597 3.589988 CTCAAAGGATTAGAGCACGTGT 58.410 45.455 18.38 3.69 0.00 4.49
2574 2604 4.121317 CAGCTGAGCTCAAAGGATTAGAG 58.879 47.826 18.85 2.82 36.40 2.43
2575 2605 3.517100 ACAGCTGAGCTCAAAGGATTAGA 59.483 43.478 23.35 0.00 36.40 2.10
2576 2606 3.870419 GACAGCTGAGCTCAAAGGATTAG 59.130 47.826 23.35 4.37 36.40 1.73
2577 2607 3.369892 GGACAGCTGAGCTCAAAGGATTA 60.370 47.826 23.35 0.00 36.40 1.75
2578 2608 2.617532 GGACAGCTGAGCTCAAAGGATT 60.618 50.000 23.35 0.00 36.40 3.01
2579 2609 1.065564 GGACAGCTGAGCTCAAAGGAT 60.066 52.381 23.35 1.59 36.40 3.24
2580 2610 0.322975 GGACAGCTGAGCTCAAAGGA 59.677 55.000 23.35 0.00 36.40 3.36
2581 2611 0.035881 TGGACAGCTGAGCTCAAAGG 59.964 55.000 23.35 11.82 36.40 3.11
2582 2612 2.110901 ATGGACAGCTGAGCTCAAAG 57.889 50.000 23.35 12.51 36.40 2.77
2583 2613 2.156917 CAATGGACAGCTGAGCTCAAA 58.843 47.619 23.35 0.22 36.40 2.69
2584 2614 1.612462 CCAATGGACAGCTGAGCTCAA 60.612 52.381 23.35 0.65 36.40 3.02
2585 2615 0.035725 CCAATGGACAGCTGAGCTCA 60.036 55.000 23.35 17.19 36.40 4.26
2586 2616 0.251354 TCCAATGGACAGCTGAGCTC 59.749 55.000 23.35 6.82 36.40 4.09
2587 2617 0.917533 ATCCAATGGACAGCTGAGCT 59.082 50.000 23.35 0.00 33.95 4.09
2588 2618 1.134159 AGATCCAATGGACAGCTGAGC 60.134 52.381 23.35 11.79 32.98 4.26
2589 2619 2.435069 AGAGATCCAATGGACAGCTGAG 59.565 50.000 23.35 0.00 32.98 3.35
2590 2620 2.475155 AGAGATCCAATGGACAGCTGA 58.525 47.619 23.35 0.00 32.98 4.26
2591 2621 3.204526 GAAGAGATCCAATGGACAGCTG 58.795 50.000 13.48 13.48 32.98 4.24
2592 2622 3.557228 GAAGAGATCCAATGGACAGCT 57.443 47.619 3.09 2.09 32.98 4.24
2604 2634 6.176183 TGTTTTCTTGATCCAGGAAGAGATC 58.824 40.000 0.00 0.00 39.50 2.75
2605 2635 6.131972 TGTTTTCTTGATCCAGGAAGAGAT 57.868 37.500 0.00 0.00 31.49 2.75
2606 2636 5.567037 TGTTTTCTTGATCCAGGAAGAGA 57.433 39.130 0.00 0.00 31.49 3.10
2607 2637 7.468357 GCATATGTTTTCTTGATCCAGGAAGAG 60.468 40.741 4.29 0.00 31.49 2.85
2608 2638 6.319658 GCATATGTTTTCTTGATCCAGGAAGA 59.680 38.462 4.29 0.00 31.49 2.87
2609 2639 6.501781 GCATATGTTTTCTTGATCCAGGAAG 58.498 40.000 4.29 0.00 31.49 3.46
2610 2640 5.066375 CGCATATGTTTTCTTGATCCAGGAA 59.934 40.000 4.29 0.00 0.00 3.36
2611 2641 4.576053 CGCATATGTTTTCTTGATCCAGGA 59.424 41.667 4.29 0.00 0.00 3.86
2612 2642 4.261322 CCGCATATGTTTTCTTGATCCAGG 60.261 45.833 4.29 0.00 0.00 4.45
2613 2643 4.790766 GCCGCATATGTTTTCTTGATCCAG 60.791 45.833 4.29 0.00 0.00 3.86
2614 2644 3.066621 GCCGCATATGTTTTCTTGATCCA 59.933 43.478 4.29 0.00 0.00 3.41
2615 2645 3.066621 TGCCGCATATGTTTTCTTGATCC 59.933 43.478 4.29 0.00 0.00 3.36
2616 2646 4.037690 GTGCCGCATATGTTTTCTTGATC 58.962 43.478 4.29 0.00 0.00 2.92
2617 2647 3.181487 GGTGCCGCATATGTTTTCTTGAT 60.181 43.478 4.29 0.00 0.00 2.57
2618 2648 2.163412 GGTGCCGCATATGTTTTCTTGA 59.837 45.455 4.29 0.00 0.00 3.02
2619 2649 2.529151 GGTGCCGCATATGTTTTCTTG 58.471 47.619 4.29 0.00 0.00 3.02
2620 2650 1.132262 CGGTGCCGCATATGTTTTCTT 59.868 47.619 4.29 0.00 0.00 2.52
2621 2651 0.732571 CGGTGCCGCATATGTTTTCT 59.267 50.000 4.29 0.00 0.00 2.52
2622 2652 0.248458 CCGGTGCCGCATATGTTTTC 60.248 55.000 4.91 0.00 38.24 2.29
2623 2653 0.963355 ACCGGTGCCGCATATGTTTT 60.963 50.000 6.12 0.00 38.24 2.43
2624 2654 1.373590 GACCGGTGCCGCATATGTTT 61.374 55.000 14.63 0.00 38.24 2.83
2625 2655 1.817941 GACCGGTGCCGCATATGTT 60.818 57.895 14.63 0.00 38.24 2.71
2626 2656 2.203015 GACCGGTGCCGCATATGT 60.203 61.111 14.63 0.00 38.24 2.29
2627 2657 1.956170 GAGACCGGTGCCGCATATG 60.956 63.158 14.63 0.00 38.24 1.78
2628 2658 2.421739 GAGACCGGTGCCGCATAT 59.578 61.111 14.63 0.00 38.24 1.78
2629 2659 3.845259 GGAGACCGGTGCCGCATA 61.845 66.667 14.63 0.00 38.24 3.14
2633 2663 3.358076 GAAGAGGAGACCGGTGCCG 62.358 68.421 14.63 3.25 39.44 5.69
2634 2664 1.545706 AAGAAGAGGAGACCGGTGCC 61.546 60.000 14.63 14.19 0.00 5.01
2635 2665 0.321996 AAAGAAGAGGAGACCGGTGC 59.678 55.000 14.63 2.99 0.00 5.01
2636 2666 1.338200 CCAAAGAAGAGGAGACCGGTG 60.338 57.143 14.63 0.00 0.00 4.94
2637 2667 0.977395 CCAAAGAAGAGGAGACCGGT 59.023 55.000 6.92 6.92 0.00 5.28
2638 2668 0.250513 CCCAAAGAAGAGGAGACCGG 59.749 60.000 0.00 0.00 0.00 5.28
2639 2669 0.250513 CCCCAAAGAAGAGGAGACCG 59.749 60.000 0.00 0.00 0.00 4.79
2640 2670 0.034960 GCCCCAAAGAAGAGGAGACC 60.035 60.000 0.00 0.00 0.00 3.85
2641 2671 0.693049 TGCCCCAAAGAAGAGGAGAC 59.307 55.000 0.00 0.00 0.00 3.36
2642 2672 1.352352 CTTGCCCCAAAGAAGAGGAGA 59.648 52.381 0.00 0.00 0.00 3.71
2643 2673 1.831580 CTTGCCCCAAAGAAGAGGAG 58.168 55.000 0.00 0.00 0.00 3.69
2644 2674 0.251341 GCTTGCCCCAAAGAAGAGGA 60.251 55.000 0.00 0.00 0.00 3.71
2645 2675 1.253593 GGCTTGCCCCAAAGAAGAGG 61.254 60.000 0.00 0.00 0.00 3.69
2646 2676 1.589716 CGGCTTGCCCCAAAGAAGAG 61.590 60.000 6.02 0.00 0.00 2.85
2647 2677 1.603455 CGGCTTGCCCCAAAGAAGA 60.603 57.895 6.02 0.00 0.00 2.87
2648 2678 2.639327 CCGGCTTGCCCCAAAGAAG 61.639 63.158 6.02 0.00 0.00 2.85
2649 2679 2.600173 CCGGCTTGCCCCAAAGAA 60.600 61.111 6.02 0.00 0.00 2.52
2673 2703 3.583882 AAACCCTGGGCCGTCCATG 62.584 63.158 14.08 0.00 46.01 3.66
2674 2704 3.264845 AAACCCTGGGCCGTCCAT 61.265 61.111 14.08 0.00 46.01 3.41
2675 2705 4.278513 CAAACCCTGGGCCGTCCA 62.279 66.667 14.08 0.00 44.79 4.02
2677 2707 4.660938 AGCAAACCCTGGGCCGTC 62.661 66.667 14.08 0.00 0.00 4.79
2678 2708 4.218686 AAGCAAACCCTGGGCCGT 62.219 61.111 14.08 0.00 0.00 5.68
2679 2709 3.373565 GAAGCAAACCCTGGGCCG 61.374 66.667 14.08 2.05 0.00 6.13
2680 2710 2.203625 TGAAGCAAACCCTGGGCC 60.204 61.111 14.08 0.00 0.00 5.80
2681 2711 2.574018 GGTGAAGCAAACCCTGGGC 61.574 63.158 14.08 0.00 0.00 5.36
2682 2712 1.153756 AGGTGAAGCAAACCCTGGG 59.846 57.895 12.28 12.28 38.57 4.45
2683 2713 1.809567 GCAGGTGAAGCAAACCCTGG 61.810 60.000 12.57 0.00 43.79 4.45
2684 2714 1.662044 GCAGGTGAAGCAAACCCTG 59.338 57.895 7.83 7.83 45.87 4.45
2685 2715 1.531602 GGCAGGTGAAGCAAACCCT 60.532 57.895 0.00 0.00 38.57 4.34
2686 2716 2.574018 GGGCAGGTGAAGCAAACCC 61.574 63.158 0.00 0.00 38.57 4.11
2687 2717 1.115326 AAGGGCAGGTGAAGCAAACC 61.115 55.000 0.00 0.00 38.03 3.27
2688 2718 0.752658 AAAGGGCAGGTGAAGCAAAC 59.247 50.000 0.00 0.00 0.00 2.93
2689 2719 0.752054 CAAAGGGCAGGTGAAGCAAA 59.248 50.000 0.00 0.00 0.00 3.68
2690 2720 0.396974 ACAAAGGGCAGGTGAAGCAA 60.397 50.000 0.00 0.00 0.00 3.91
2691 2721 1.108727 CACAAAGGGCAGGTGAAGCA 61.109 55.000 0.00 0.00 34.52 3.91
2692 2722 1.109323 ACACAAAGGGCAGGTGAAGC 61.109 55.000 0.00 0.00 36.42 3.86
2693 2723 0.954452 GACACAAAGGGCAGGTGAAG 59.046 55.000 0.00 0.00 36.42 3.02
2694 2724 0.550914 AGACACAAAGGGCAGGTGAA 59.449 50.000 0.00 0.00 36.42 3.18
2695 2725 1.429930 TAGACACAAAGGGCAGGTGA 58.570 50.000 0.00 0.00 36.42 4.02
2696 2726 2.086869 CATAGACACAAAGGGCAGGTG 58.913 52.381 0.00 0.00 38.47 4.00
2697 2727 1.004745 CCATAGACACAAAGGGCAGGT 59.995 52.381 0.00 0.00 0.00 4.00
2698 2728 1.755179 CCATAGACACAAAGGGCAGG 58.245 55.000 0.00 0.00 0.00 4.85
2699 2729 1.098050 GCCATAGACACAAAGGGCAG 58.902 55.000 0.00 0.00 41.02 4.85
2700 2730 0.323360 GGCCATAGACACAAAGGGCA 60.323 55.000 0.00 0.00 43.09 5.36
2701 2731 1.037579 GGGCCATAGACACAAAGGGC 61.038 60.000 4.39 0.00 43.51 5.19
2702 2732 0.331278 TGGGCCATAGACACAAAGGG 59.669 55.000 0.00 0.00 0.00 3.95
2703 2733 2.026641 CATGGGCCATAGACACAAAGG 58.973 52.381 20.73 0.00 0.00 3.11
2704 2734 2.026641 CCATGGGCCATAGACACAAAG 58.973 52.381 20.73 3.01 0.00 2.77
2705 2735 1.341877 CCCATGGGCCATAGACACAAA 60.342 52.381 20.41 0.00 0.00 2.83
2706 2736 0.258484 CCCATGGGCCATAGACACAA 59.742 55.000 20.41 0.00 0.00 3.33
2707 2737 1.922057 CCCATGGGCCATAGACACA 59.078 57.895 20.41 0.00 0.00 3.72
2708 2738 4.907457 CCCATGGGCCATAGACAC 57.093 61.111 20.41 0.00 0.00 3.67
2718 2748 1.748879 CCGTGTTGTAGCCCATGGG 60.749 63.158 27.87 27.87 34.68 4.00
2719 2749 1.002624 ACCGTGTTGTAGCCCATGG 60.003 57.895 4.14 4.14 42.36 3.66
2720 2750 1.922135 GCACCGTGTTGTAGCCCATG 61.922 60.000 0.00 0.00 0.00 3.66
2721 2751 1.674322 GCACCGTGTTGTAGCCCAT 60.674 57.895 0.00 0.00 0.00 4.00
2722 2752 2.281208 GCACCGTGTTGTAGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
2723 2753 2.281208 TGCACCGTGTTGTAGCCC 60.281 61.111 0.00 0.00 0.00 5.19
2724 2754 1.597027 ACTGCACCGTGTTGTAGCC 60.597 57.895 0.00 0.00 32.80 3.93
2725 2755 1.569493 CACTGCACCGTGTTGTAGC 59.431 57.895 0.00 0.00 32.80 3.58
2726 2756 1.569493 GCACTGCACCGTGTTGTAG 59.431 57.895 7.80 0.00 37.24 2.74
2727 2757 2.241190 CGCACTGCACCGTGTTGTA 61.241 57.895 7.80 0.00 37.24 2.41
2728 2758 3.572539 CGCACTGCACCGTGTTGT 61.573 61.111 7.80 0.00 37.24 3.32
2729 2759 3.268603 TCGCACTGCACCGTGTTG 61.269 61.111 7.80 2.04 37.24 3.33
2730 2760 3.269347 GTCGCACTGCACCGTGTT 61.269 61.111 7.80 0.00 37.24 3.32
2731 2761 4.221422 AGTCGCACTGCACCGTGT 62.221 61.111 7.80 0.00 37.24 4.49
2732 2762 3.406361 GAGTCGCACTGCACCGTG 61.406 66.667 1.11 1.82 37.94 4.94
2739 2769 4.803426 GGAGGCCGAGTCGCACTG 62.803 72.222 7.12 0.00 0.00 3.66
2751 2781 4.552365 TGCTAGGCATGCGGAGGC 62.552 66.667 12.44 4.50 34.52 4.70
2752 2782 2.590007 GTGCTAGGCATGCGGAGG 60.590 66.667 12.44 2.97 41.91 4.30
2753 2783 1.593750 GAGTGCTAGGCATGCGGAG 60.594 63.158 12.44 12.19 41.91 4.63
2754 2784 2.021068 GAGAGTGCTAGGCATGCGGA 62.021 60.000 12.44 0.19 41.91 5.54
2755 2785 1.593750 GAGAGTGCTAGGCATGCGG 60.594 63.158 12.44 5.60 41.91 5.69
2756 2786 0.249784 ATGAGAGTGCTAGGCATGCG 60.250 55.000 12.44 0.00 41.91 4.73
2757 2787 1.227639 CATGAGAGTGCTAGGCATGC 58.772 55.000 9.90 9.90 41.91 4.06
2758 2788 1.880271 CCATGAGAGTGCTAGGCATG 58.120 55.000 0.00 0.00 41.91 4.06
2759 2789 0.108207 GCCATGAGAGTGCTAGGCAT 59.892 55.000 0.00 0.00 41.91 4.40
2760 2790 1.524002 GCCATGAGAGTGCTAGGCA 59.476 57.895 0.00 0.00 41.63 4.75
2761 2791 1.593750 CGCCATGAGAGTGCTAGGC 60.594 63.158 0.00 0.00 38.73 3.93
2762 2792 1.068753 CCGCCATGAGAGTGCTAGG 59.931 63.158 0.00 0.00 0.00 3.02
2763 2793 1.068753 CCCGCCATGAGAGTGCTAG 59.931 63.158 0.00 0.00 0.00 3.42
2764 2794 3.094062 GCCCGCCATGAGAGTGCTA 62.094 63.158 0.00 0.00 0.00 3.49
2765 2795 4.479993 GCCCGCCATGAGAGTGCT 62.480 66.667 0.00 0.00 0.00 4.40
2766 2796 4.783621 TGCCCGCCATGAGAGTGC 62.784 66.667 0.00 0.00 0.00 4.40
2767 2797 2.046023 TTGCCCGCCATGAGAGTG 60.046 61.111 0.00 0.00 0.00 3.51
2768 2798 2.270205 CTTGCCCGCCATGAGAGT 59.730 61.111 0.00 0.00 0.00 3.24
2769 2799 1.817099 GTCTTGCCCGCCATGAGAG 60.817 63.158 0.00 0.00 0.00 3.20
2770 2800 2.268920 GTCTTGCCCGCCATGAGA 59.731 61.111 0.00 0.00 0.00 3.27
2771 2801 3.197790 CGTCTTGCCCGCCATGAG 61.198 66.667 0.00 0.00 0.00 2.90
2772 2802 4.776322 CCGTCTTGCCCGCCATGA 62.776 66.667 0.00 0.00 0.00 3.07
2781 2811 3.056328 GTCCAAGGCCCGTCTTGC 61.056 66.667 0.00 0.00 41.89 4.01
2782 2812 1.376037 GAGTCCAAGGCCCGTCTTG 60.376 63.158 0.00 1.96 42.63 3.02
2783 2813 2.943978 CGAGTCCAAGGCCCGTCTT 61.944 63.158 0.00 0.00 0.00 3.01
2784 2814 3.382832 CGAGTCCAAGGCCCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
2785 2815 4.452733 CCGAGTCCAAGGCCCGTC 62.453 72.222 0.00 0.00 0.00 4.79
2787 2817 4.148825 CTCCGAGTCCAAGGCCCG 62.149 72.222 0.00 0.00 0.00 6.13
2788 2818 4.475135 GCTCCGAGTCCAAGGCCC 62.475 72.222 0.00 0.00 0.00 5.80
2789 2819 4.475135 GGCTCCGAGTCCAAGGCC 62.475 72.222 0.00 0.00 0.00 5.19
2790 2820 4.475135 GGGCTCCGAGTCCAAGGC 62.475 72.222 14.53 4.81 40.51 4.35
2801 2831 1.526917 CCCATCAATGTCGGGCTCC 60.527 63.158 0.00 0.00 31.89 4.70
2802 2832 0.815615 GTCCCATCAATGTCGGGCTC 60.816 60.000 5.10 0.00 40.05 4.70
2803 2833 1.224592 GTCCCATCAATGTCGGGCT 59.775 57.895 5.10 0.00 40.05 5.19
2804 2834 0.679640 TTGTCCCATCAATGTCGGGC 60.680 55.000 5.10 2.40 40.05 6.13
2805 2835 1.382522 CTTGTCCCATCAATGTCGGG 58.617 55.000 3.79 3.79 41.76 5.14
2806 2836 1.065491 TCCTTGTCCCATCAATGTCGG 60.065 52.381 0.00 0.00 0.00 4.79
2807 2837 2.009774 GTCCTTGTCCCATCAATGTCG 58.990 52.381 0.00 0.00 0.00 4.35
2808 2838 2.369394 GGTCCTTGTCCCATCAATGTC 58.631 52.381 0.00 0.00 0.00 3.06
2809 2839 1.005924 GGGTCCTTGTCCCATCAATGT 59.994 52.381 0.00 0.00 44.05 2.71
2810 2840 1.767759 GGGTCCTTGTCCCATCAATG 58.232 55.000 0.00 0.00 44.05 2.82
2817 2847 0.112412 ATGTGTTGGGTCCTTGTCCC 59.888 55.000 0.00 0.00 44.81 4.46
2818 2848 1.247567 CATGTGTTGGGTCCTTGTCC 58.752 55.000 0.00 0.00 0.00 4.02
2819 2849 1.247567 CCATGTGTTGGGTCCTTGTC 58.752 55.000 0.00 0.00 42.33 3.18
2820 2850 3.437642 CCATGTGTTGGGTCCTTGT 57.562 52.632 0.00 0.00 42.33 3.16
2828 2858 1.602668 CGAGCAAAACCCATGTGTTGG 60.603 52.381 0.00 0.00 46.00 3.77
2829 2859 1.602668 CCGAGCAAAACCCATGTGTTG 60.603 52.381 0.00 0.00 41.80 3.33
2830 2860 0.673437 CCGAGCAAAACCCATGTGTT 59.327 50.000 0.00 0.00 0.00 3.32
2831 2861 1.805428 GCCGAGCAAAACCCATGTGT 61.805 55.000 0.00 0.00 0.00 3.72
2832 2862 1.080569 GCCGAGCAAAACCCATGTG 60.081 57.895 0.00 0.00 0.00 3.21
2833 2863 2.275380 GGCCGAGCAAAACCCATGT 61.275 57.895 0.00 0.00 0.00 3.21
2834 2864 2.573340 GGCCGAGCAAAACCCATG 59.427 61.111 0.00 0.00 0.00 3.66
2835 2865 3.061848 CGGCCGAGCAAAACCCAT 61.062 61.111 24.07 0.00 0.00 4.00
2838 2868 4.404654 CAGCGGCCGAGCAAAACC 62.405 66.667 33.48 8.41 40.15 3.27
2839 2869 3.595108 GACAGCGGCCGAGCAAAAC 62.595 63.158 33.48 9.31 40.15 2.43
2840 2870 3.353836 GACAGCGGCCGAGCAAAA 61.354 61.111 33.48 0.00 40.15 2.44
2851 2881 1.944676 GCCGAATCTACCGACAGCG 60.945 63.158 0.00 0.00 37.24 5.18
2852 2882 0.179108 AAGCCGAATCTACCGACAGC 60.179 55.000 0.00 0.00 0.00 4.40
2853 2883 1.927174 CAAAGCCGAATCTACCGACAG 59.073 52.381 0.00 0.00 0.00 3.51
2854 2884 1.404986 CCAAAGCCGAATCTACCGACA 60.405 52.381 0.00 0.00 0.00 4.35
2855 2885 1.134907 TCCAAAGCCGAATCTACCGAC 60.135 52.381 0.00 0.00 0.00 4.79
2856 2886 1.136305 CTCCAAAGCCGAATCTACCGA 59.864 52.381 0.00 0.00 0.00 4.69
2857 2887 1.571919 CTCCAAAGCCGAATCTACCG 58.428 55.000 0.00 0.00 0.00 4.02
2858 2888 1.300481 GCTCCAAAGCCGAATCTACC 58.700 55.000 0.00 0.00 43.10 3.18
2859 2889 0.931005 CGCTCCAAAGCCGAATCTAC 59.069 55.000 0.00 0.00 46.34 2.59
2860 2890 0.821517 TCGCTCCAAAGCCGAATCTA 59.178 50.000 0.00 0.00 46.34 1.98
2861 2891 0.036388 TTCGCTCCAAAGCCGAATCT 60.036 50.000 0.00 0.00 46.34 2.40
2862 2892 0.097150 GTTCGCTCCAAAGCCGAATC 59.903 55.000 0.00 0.00 46.34 2.52
2863 2893 0.605319 TGTTCGCTCCAAAGCCGAAT 60.605 50.000 0.00 0.00 46.34 3.34
2864 2894 1.227704 TGTTCGCTCCAAAGCCGAA 60.228 52.632 0.00 0.00 46.34 4.30
2865 2895 1.959226 GTGTTCGCTCCAAAGCCGA 60.959 57.895 0.00 0.00 46.34 5.54
2866 2896 2.556287 GTGTTCGCTCCAAAGCCG 59.444 61.111 0.00 0.00 46.34 5.52
2867 2897 2.556287 CGTGTTCGCTCCAAAGCC 59.444 61.111 0.00 0.00 46.34 4.35
2877 2907 3.248171 GCTCTAGGCGCGTGTTCG 61.248 66.667 13.84 0.00 40.37 3.95
2878 2908 2.886124 GGCTCTAGGCGCGTGTTC 60.886 66.667 13.84 0.00 42.94 3.18
2879 2909 3.649277 CTGGCTCTAGGCGCGTGTT 62.649 63.158 13.84 0.00 44.42 3.32
2880 2910 4.135153 CTGGCTCTAGGCGCGTGT 62.135 66.667 13.84 0.00 44.42 4.49
2886 2916 4.228567 GTCCGGCTGGCTCTAGGC 62.229 72.222 6.73 0.00 39.65 3.93
2887 2917 3.905678 CGTCCGGCTGGCTCTAGG 61.906 72.222 6.73 0.00 34.14 3.02
2888 2918 2.829003 TCGTCCGGCTGGCTCTAG 60.829 66.667 6.73 0.00 34.14 2.43
2889 2919 2.261430 TAGTCGTCCGGCTGGCTCTA 62.261 60.000 6.73 3.89 34.14 2.43
2890 2920 2.912987 ATAGTCGTCCGGCTGGCTCT 62.913 60.000 6.73 4.88 34.14 4.09
2891 2921 2.409241 GATAGTCGTCCGGCTGGCTC 62.409 65.000 6.73 1.27 34.14 4.70
2892 2922 2.442272 ATAGTCGTCCGGCTGGCT 60.442 61.111 6.73 0.00 34.14 4.75
2893 2923 2.027751 GATAGTCGTCCGGCTGGC 59.972 66.667 6.73 0.72 34.14 4.85
2894 2924 1.655329 GAGATAGTCGTCCGGCTGG 59.345 63.158 4.71 4.71 0.00 4.85
2895 2925 0.820074 AGGAGATAGTCGTCCGGCTG 60.820 60.000 3.71 0.00 37.97 4.85
2896 2926 0.535553 GAGGAGATAGTCGTCCGGCT 60.536 60.000 0.00 0.00 37.97 5.52
2897 2927 1.950758 GAGGAGATAGTCGTCCGGC 59.049 63.158 0.00 0.00 37.97 6.13
2901 2931 2.243602 ACGAGGAGGAGATAGTCGTC 57.756 55.000 0.00 0.00 39.59 4.20
2902 2932 2.290464 CAACGAGGAGGAGATAGTCGT 58.710 52.381 0.00 0.00 45.34 4.34
2903 2933 1.604755 CCAACGAGGAGGAGATAGTCG 59.395 57.143 0.00 0.00 41.22 4.18
2904 2934 2.359531 CACCAACGAGGAGGAGATAGTC 59.640 54.545 5.70 0.00 41.22 2.59
2905 2935 2.379972 CACCAACGAGGAGGAGATAGT 58.620 52.381 5.70 0.00 41.22 2.12
2906 2936 1.067821 GCACCAACGAGGAGGAGATAG 59.932 57.143 5.70 0.00 41.22 2.08
2907 2937 1.112113 GCACCAACGAGGAGGAGATA 58.888 55.000 5.70 0.00 41.22 1.98
2908 2938 0.904865 TGCACCAACGAGGAGGAGAT 60.905 55.000 5.70 0.00 41.22 2.75
2909 2939 1.533033 TGCACCAACGAGGAGGAGA 60.533 57.895 5.70 0.00 41.22 3.71
2910 2940 1.079543 CTGCACCAACGAGGAGGAG 60.080 63.158 5.70 4.73 39.78 3.69
2911 2941 3.059982 CTGCACCAACGAGGAGGA 58.940 61.111 5.70 0.00 41.22 3.71
2912 2942 2.743928 GCTGCACCAACGAGGAGG 60.744 66.667 5.70 0.00 41.22 4.30
2913 2943 3.114616 CGCTGCACCAACGAGGAG 61.115 66.667 0.00 0.00 41.22 3.69
2914 2944 4.680237 CCGCTGCACCAACGAGGA 62.680 66.667 0.00 0.00 41.22 3.71
2915 2945 4.680237 TCCGCTGCACCAACGAGG 62.680 66.667 0.00 0.00 45.67 4.63
2916 2946 3.414700 GTCCGCTGCACCAACGAG 61.415 66.667 0.00 0.00 0.00 4.18
2931 2961 2.467826 CGTCGACTAGGACCCCGTC 61.468 68.421 14.70 1.56 33.30 4.79
2932 2962 2.437359 CGTCGACTAGGACCCCGT 60.437 66.667 14.70 0.00 33.30 5.28
2933 2963 2.955022 ATCCGTCGACTAGGACCCCG 62.955 65.000 14.70 0.00 39.66 5.73
2934 2964 1.152798 ATCCGTCGACTAGGACCCC 60.153 63.158 14.70 0.00 39.66 4.95
2935 2965 1.171549 GGATCCGTCGACTAGGACCC 61.172 65.000 14.70 10.59 39.66 4.46
2936 2966 1.505477 CGGATCCGTCGACTAGGACC 61.505 65.000 26.35 14.90 39.66 4.46
2937 2967 1.505477 CCGGATCCGTCGACTAGGAC 61.505 65.000 31.22 8.37 39.66 3.85
2938 2968 1.227764 CCGGATCCGTCGACTAGGA 60.228 63.158 31.22 14.11 41.30 2.94
2939 2969 1.227764 TCCGGATCCGTCGACTAGG 60.228 63.158 31.22 14.29 37.81 3.02
2940 2970 0.532417 ACTCCGGATCCGTCGACTAG 60.532 60.000 31.22 19.21 37.81 2.57
2941 2971 0.107508 AACTCCGGATCCGTCGACTA 60.108 55.000 31.22 9.46 37.81 2.59
2942 2972 1.378250 AACTCCGGATCCGTCGACT 60.378 57.895 31.22 10.03 37.81 4.18
2943 2973 1.226603 CAACTCCGGATCCGTCGAC 60.227 63.158 31.22 5.18 37.81 4.20
2944 2974 3.060020 GCAACTCCGGATCCGTCGA 62.060 63.158 31.22 21.07 37.81 4.20
2945 2975 2.582498 GCAACTCCGGATCCGTCG 60.582 66.667 31.22 22.92 37.81 5.12
2946 2976 2.202892 GGCAACTCCGGATCCGTC 60.203 66.667 31.22 13.01 37.81 4.79
2947 2977 2.119484 TTTGGCAACTCCGGATCCGT 62.119 55.000 31.22 11.84 37.80 4.69
2948 2978 1.376683 TTTGGCAACTCCGGATCCG 60.377 57.895 27.65 27.65 37.80 4.18
2949 2979 0.322546 AGTTTGGCAACTCCGGATCC 60.323 55.000 3.57 0.00 39.15 3.36
2950 2980 3.249687 AGTTTGGCAACTCCGGATC 57.750 52.632 3.57 0.00 39.15 3.36
2957 2987 0.535102 CGGGTCTGAGTTTGGCAACT 60.535 55.000 0.00 0.12 46.64 3.16
2958 2988 0.818040 ACGGGTCTGAGTTTGGCAAC 60.818 55.000 0.00 0.00 0.00 4.17
2959 2989 0.106918 AACGGGTCTGAGTTTGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
2960 2990 0.817634 CAACGGGTCTGAGTTTGGCA 60.818 55.000 0.00 0.00 0.00 4.92
2961 2991 1.949257 CAACGGGTCTGAGTTTGGC 59.051 57.895 0.00 0.00 0.00 4.52
2962 2992 1.515521 GGCAACGGGTCTGAGTTTGG 61.516 60.000 0.00 0.00 0.00 3.28
2963 2993 1.515521 GGGCAACGGGTCTGAGTTTG 61.516 60.000 0.00 0.00 37.60 2.93
2964 2994 1.228154 GGGCAACGGGTCTGAGTTT 60.228 57.895 0.00 0.00 37.60 2.66
2965 2995 2.430367 GGGCAACGGGTCTGAGTT 59.570 61.111 0.00 0.00 37.60 3.01
2966 2996 2.847234 TGGGCAACGGGTCTGAGT 60.847 61.111 0.00 0.00 37.60 3.41
2967 2997 2.358737 GTGGGCAACGGGTCTGAG 60.359 66.667 0.00 0.00 37.60 3.35
2968 2998 3.948719 GGTGGGCAACGGGTCTGA 61.949 66.667 0.00 0.00 37.60 3.27
2969 2999 3.567579 ATGGTGGGCAACGGGTCTG 62.568 63.158 0.00 0.00 37.60 3.51
2970 3000 3.256960 ATGGTGGGCAACGGGTCT 61.257 61.111 0.00 0.00 37.60 3.85
2971 3001 3.061848 CATGGTGGGCAACGGGTC 61.062 66.667 0.00 0.00 37.60 4.46
2972 3002 3.860930 GACATGGTGGGCAACGGGT 62.861 63.158 0.00 0.00 37.60 5.28
2973 3003 3.061848 GACATGGTGGGCAACGGG 61.062 66.667 0.00 0.00 37.60 5.28
2974 3004 1.459455 TTTGACATGGTGGGCAACGG 61.459 55.000 0.00 0.00 37.60 4.44
2975 3005 0.387202 TTTTGACATGGTGGGCAACG 59.613 50.000 0.00 0.00 37.60 4.10
2976 3006 2.611225 TTTTTGACATGGTGGGCAAC 57.389 45.000 0.00 0.00 0.00 4.17
2977 3007 2.702478 TCATTTTTGACATGGTGGGCAA 59.298 40.909 0.00 0.00 0.00 4.52
2978 3008 2.323599 TCATTTTTGACATGGTGGGCA 58.676 42.857 0.00 0.00 0.00 5.36
2979 3009 3.055963 TGATCATTTTTGACATGGTGGGC 60.056 43.478 0.00 0.00 0.00 5.36
2980 3010 4.804868 TGATCATTTTTGACATGGTGGG 57.195 40.909 0.00 0.00 0.00 4.61
2981 3011 4.622313 CGTTGATCATTTTTGACATGGTGG 59.378 41.667 0.00 0.00 0.00 4.61
2982 3012 5.459768 TCGTTGATCATTTTTGACATGGTG 58.540 37.500 0.00 0.00 0.00 4.17
2983 3013 5.703978 TCGTTGATCATTTTTGACATGGT 57.296 34.783 0.00 0.00 0.00 3.55
2984 3014 6.324042 TGATCGTTGATCATTTTTGACATGG 58.676 36.000 5.42 0.00 43.11 3.66
2996 3026 0.459899 CCTCCGGTGATCGTTGATCA 59.540 55.000 4.76 5.42 45.35 2.92
2997 3027 0.744874 TCCTCCGGTGATCGTTGATC 59.255 55.000 4.76 0.00 39.31 2.92
2998 3028 0.747255 CTCCTCCGGTGATCGTTGAT 59.253 55.000 4.76 0.00 37.11 2.57
2999 3029 1.945354 GCTCCTCCGGTGATCGTTGA 61.945 60.000 4.76 0.00 37.11 3.18
3000 3030 1.519455 GCTCCTCCGGTGATCGTTG 60.519 63.158 4.76 0.00 37.11 4.10
3001 3031 1.682684 AGCTCCTCCGGTGATCGTT 60.683 57.895 4.76 0.00 37.11 3.85
3002 3032 2.043852 AGCTCCTCCGGTGATCGT 60.044 61.111 4.76 0.00 37.11 3.73
3003 3033 2.415010 CAGCTCCTCCGGTGATCG 59.585 66.667 4.76 0.00 34.46 3.69
3004 3034 2.801631 CCCAGCTCCTCCGGTGATC 61.802 68.421 4.76 0.00 34.46 2.92
3005 3035 2.765807 CCCAGCTCCTCCGGTGAT 60.766 66.667 4.76 0.00 34.46 3.06
3022 3052 4.767255 CAGTCCACTCCGCCCAGC 62.767 72.222 0.00 0.00 0.00 4.85
3023 3053 4.087892 CCAGTCCACTCCGCCCAG 62.088 72.222 0.00 0.00 0.00 4.45
3024 3054 4.631740 TCCAGTCCACTCCGCCCA 62.632 66.667 0.00 0.00 0.00 5.36
3025 3055 3.316573 CTTCCAGTCCACTCCGCCC 62.317 68.421 0.00 0.00 0.00 6.13
3026 3056 2.266055 CTTCCAGTCCACTCCGCC 59.734 66.667 0.00 0.00 0.00 6.13
3027 3057 1.374758 CACTTCCAGTCCACTCCGC 60.375 63.158 0.00 0.00 0.00 5.54
3028 3058 1.185618 TCCACTTCCAGTCCACTCCG 61.186 60.000 0.00 0.00 0.00 4.63
3029 3059 1.056660 TTCCACTTCCAGTCCACTCC 58.943 55.000 0.00 0.00 0.00 3.85
3030 3060 2.303022 TCATTCCACTTCCAGTCCACTC 59.697 50.000 0.00 0.00 0.00 3.51
3031 3061 2.338809 TCATTCCACTTCCAGTCCACT 58.661 47.619 0.00 0.00 0.00 4.00
3032 3062 2.859165 TCATTCCACTTCCAGTCCAC 57.141 50.000 0.00 0.00 0.00 4.02
3033 3063 3.874383 TTTCATTCCACTTCCAGTCCA 57.126 42.857 0.00 0.00 0.00 4.02
3034 3064 3.445096 CCATTTCATTCCACTTCCAGTCC 59.555 47.826 0.00 0.00 0.00 3.85
3035 3065 3.119352 GCCATTTCATTCCACTTCCAGTC 60.119 47.826 0.00 0.00 0.00 3.51
3036 3066 2.827921 GCCATTTCATTCCACTTCCAGT 59.172 45.455 0.00 0.00 0.00 4.00
3037 3067 2.827322 TGCCATTTCATTCCACTTCCAG 59.173 45.455 0.00 0.00 0.00 3.86
3038 3068 2.886913 TGCCATTTCATTCCACTTCCA 58.113 42.857 0.00 0.00 0.00 3.53
3039 3069 3.959535 TTGCCATTTCATTCCACTTCC 57.040 42.857 0.00 0.00 0.00 3.46
3040 3070 6.480981 CCATATTTGCCATTTCATTCCACTTC 59.519 38.462 0.00 0.00 0.00 3.01
3041 3071 6.350906 CCATATTTGCCATTTCATTCCACTT 58.649 36.000 0.00 0.00 0.00 3.16
3042 3072 5.685599 GCCATATTTGCCATTTCATTCCACT 60.686 40.000 0.00 0.00 0.00 4.00
3043 3073 4.512571 GCCATATTTGCCATTTCATTCCAC 59.487 41.667 0.00 0.00 0.00 4.02
3044 3074 4.409574 AGCCATATTTGCCATTTCATTCCA 59.590 37.500 0.00 0.00 0.00 3.53
3045 3075 4.964593 AGCCATATTTGCCATTTCATTCC 58.035 39.130 0.00 0.00 0.00 3.01
3046 3076 6.015180 TCCTAGCCATATTTGCCATTTCATTC 60.015 38.462 0.00 0.00 0.00 2.67
3047 3077 5.840149 TCCTAGCCATATTTGCCATTTCATT 59.160 36.000 0.00 0.00 0.00 2.57
3048 3078 5.396485 TCCTAGCCATATTTGCCATTTCAT 58.604 37.500 0.00 0.00 0.00 2.57
3049 3079 4.802307 TCCTAGCCATATTTGCCATTTCA 58.198 39.130 0.00 0.00 0.00 2.69
3050 3080 5.990120 ATCCTAGCCATATTTGCCATTTC 57.010 39.130 0.00 0.00 0.00 2.17
3051 3081 6.464749 CCAAATCCTAGCCATATTTGCCATTT 60.465 38.462 0.00 0.00 38.62 2.32
3052 3082 5.012354 CCAAATCCTAGCCATATTTGCCATT 59.988 40.000 0.00 0.00 38.62 3.16
3053 3083 4.529377 CCAAATCCTAGCCATATTTGCCAT 59.471 41.667 0.00 0.00 38.62 4.40
3054 3084 3.896888 CCAAATCCTAGCCATATTTGCCA 59.103 43.478 0.00 0.00 38.62 4.92
3055 3085 3.897505 ACCAAATCCTAGCCATATTTGCC 59.102 43.478 0.00 0.00 38.62 4.52
3056 3086 4.584325 TGACCAAATCCTAGCCATATTTGC 59.416 41.667 0.00 0.00 38.62 3.68
3057 3087 5.242393 CCTGACCAAATCCTAGCCATATTTG 59.758 44.000 0.00 0.00 39.31 2.32
3058 3088 5.388654 CCTGACCAAATCCTAGCCATATTT 58.611 41.667 0.00 0.00 0.00 1.40
3059 3089 4.202609 CCCTGACCAAATCCTAGCCATATT 60.203 45.833 0.00 0.00 0.00 1.28
3060 3090 3.331889 CCCTGACCAAATCCTAGCCATAT 59.668 47.826 0.00 0.00 0.00 1.78
3061 3091 2.711009 CCCTGACCAAATCCTAGCCATA 59.289 50.000 0.00 0.00 0.00 2.74
3062 3092 1.496429 CCCTGACCAAATCCTAGCCAT 59.504 52.381 0.00 0.00 0.00 4.40
3063 3093 0.918983 CCCTGACCAAATCCTAGCCA 59.081 55.000 0.00 0.00 0.00 4.75
3064 3094 0.183731 CCCCTGACCAAATCCTAGCC 59.816 60.000 0.00 0.00 0.00 3.93
3065 3095 0.919710 ACCCCTGACCAAATCCTAGC 59.080 55.000 0.00 0.00 0.00 3.42
3066 3096 3.112263 TGTACCCCTGACCAAATCCTAG 58.888 50.000 0.00 0.00 0.00 3.02
3067 3097 3.208570 TGTACCCCTGACCAAATCCTA 57.791 47.619 0.00 0.00 0.00 2.94
3068 3098 2.053747 TGTACCCCTGACCAAATCCT 57.946 50.000 0.00 0.00 0.00 3.24
3069 3099 2.891191 TTGTACCCCTGACCAAATCC 57.109 50.000 0.00 0.00 0.00 3.01
3070 3100 5.301805 CCATATTTGTACCCCTGACCAAATC 59.698 44.000 0.00 0.00 38.23 2.17
3071 3101 5.043732 TCCATATTTGTACCCCTGACCAAAT 60.044 40.000 0.00 0.00 39.88 2.32
3072 3102 4.292571 TCCATATTTGTACCCCTGACCAAA 59.707 41.667 0.00 0.00 0.00 3.28
3073 3103 3.853181 TCCATATTTGTACCCCTGACCAA 59.147 43.478 0.00 0.00 0.00 3.67
3074 3104 3.201266 GTCCATATTTGTACCCCTGACCA 59.799 47.826 0.00 0.00 0.00 4.02
3075 3105 3.201266 TGTCCATATTTGTACCCCTGACC 59.799 47.826 0.00 0.00 0.00 4.02
3076 3106 4.497291 TGTCCATATTTGTACCCCTGAC 57.503 45.455 0.00 0.00 0.00 3.51
3077 3107 4.724293 TCATGTCCATATTTGTACCCCTGA 59.276 41.667 0.00 0.00 0.00 3.86
3078 3108 5.047566 TCATGTCCATATTTGTACCCCTG 57.952 43.478 0.00 0.00 0.00 4.45
3079 3109 5.930209 ATCATGTCCATATTTGTACCCCT 57.070 39.130 0.00 0.00 0.00 4.79
3080 3110 9.342308 CATATATCATGTCCATATTTGTACCCC 57.658 37.037 0.00 0.00 0.00 4.95
3081 3111 9.905713 ACATATATCATGTCCATATTTGTACCC 57.094 33.333 7.00 0.00 30.86 3.69
3084 3114 9.904198 CCCACATATATCATGTCCATATTTGTA 57.096 33.333 7.94 0.00 31.22 2.41
3085 3115 7.835682 CCCCACATATATCATGTCCATATTTGT 59.164 37.037 0.00 0.00 32.02 2.83
3086 3116 7.835682 ACCCCACATATATCATGTCCATATTTG 59.164 37.037 0.00 0.00 0.00 2.32
3087 3117 7.943076 ACCCCACATATATCATGTCCATATTT 58.057 34.615 0.00 0.00 0.00 1.40
3088 3118 7.529534 ACCCCACATATATCATGTCCATATT 57.470 36.000 0.00 0.00 0.00 1.28
3089 3119 6.183361 CGACCCCACATATATCATGTCCATAT 60.183 42.308 0.00 0.00 0.00 1.78
3090 3120 5.128663 CGACCCCACATATATCATGTCCATA 59.871 44.000 0.00 0.00 0.00 2.74
3091 3121 4.080919 CGACCCCACATATATCATGTCCAT 60.081 45.833 0.00 0.00 0.00 3.41
3092 3122 3.260632 CGACCCCACATATATCATGTCCA 59.739 47.826 0.00 0.00 0.00 4.02
3093 3123 3.513912 TCGACCCCACATATATCATGTCC 59.486 47.826 0.00 0.00 0.00 4.02
3094 3124 4.801330 TCGACCCCACATATATCATGTC 57.199 45.455 0.00 0.00 0.00 3.06
3095 3125 4.593206 ACTTCGACCCCACATATATCATGT 59.407 41.667 0.00 0.00 0.00 3.21
3096 3126 4.931601 CACTTCGACCCCACATATATCATG 59.068 45.833 0.00 0.00 0.00 3.07
3097 3127 4.020218 CCACTTCGACCCCACATATATCAT 60.020 45.833 0.00 0.00 0.00 2.45
3098 3128 3.323691 CCACTTCGACCCCACATATATCA 59.676 47.826 0.00 0.00 0.00 2.15
3099 3129 3.306780 CCCACTTCGACCCCACATATATC 60.307 52.174 0.00 0.00 0.00 1.63
3100 3130 2.637872 CCCACTTCGACCCCACATATAT 59.362 50.000 0.00 0.00 0.00 0.86
3101 3131 2.043992 CCCACTTCGACCCCACATATA 58.956 52.381 0.00 0.00 0.00 0.86
3102 3132 0.837272 CCCACTTCGACCCCACATAT 59.163 55.000 0.00 0.00 0.00 1.78
3103 3133 0.252330 TCCCACTTCGACCCCACATA 60.252 55.000 0.00 0.00 0.00 2.29
3104 3134 1.537889 TCCCACTTCGACCCCACAT 60.538 57.895 0.00 0.00 0.00 3.21
3105 3135 2.122769 TCCCACTTCGACCCCACA 60.123 61.111 0.00 0.00 0.00 4.17
3106 3136 2.346365 GTCCCACTTCGACCCCAC 59.654 66.667 0.00 0.00 0.00 4.61
3107 3137 3.307906 CGTCCCACTTCGACCCCA 61.308 66.667 0.00 0.00 0.00 4.96
3108 3138 4.078516 CCGTCCCACTTCGACCCC 62.079 72.222 0.00 0.00 0.00 4.95
3109 3139 3.308705 ACCGTCCCACTTCGACCC 61.309 66.667 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.