Multiple sequence alignment - TraesCS4D01G227900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G227900 chr4D 100.000 5565 0 0 1 5565 387328727 387334291 0.000000e+00 10277.0
1 TraesCS4D01G227900 chr4A 92.762 1948 83 19 701 2640 68680839 68682736 0.000000e+00 2763.0
2 TraesCS4D01G227900 chr4A 90.798 1391 84 22 2692 4070 68682730 68684088 0.000000e+00 1820.0
3 TraesCS4D01G227900 chr4A 92.421 818 38 11 4125 4930 68684088 68684893 0.000000e+00 1146.0
4 TraesCS4D01G227900 chr4A 83.046 348 38 17 333 663 697276395 697276738 4.220000e-76 296.0
5 TraesCS4D01G227900 chr4B 94.438 1798 60 13 746 2532 475802447 475804215 0.000000e+00 2730.0
6 TraesCS4D01G227900 chr4B 88.519 810 62 19 3281 4076 475805034 475805826 0.000000e+00 952.0
7 TraesCS4D01G227900 chr4B 93.694 444 18 5 2841 3281 475804558 475804994 0.000000e+00 656.0
8 TraesCS4D01G227900 chr4B 83.399 506 43 22 4082 4569 475805923 475806405 1.110000e-116 431.0
9 TraesCS4D01G227900 chr4B 86.207 348 28 10 4566 4911 475806663 475806992 5.300000e-95 359.0
10 TraesCS4D01G227900 chr4B 87.629 291 30 5 333 618 580799235 580799524 3.210000e-87 333.0
11 TraesCS4D01G227900 chr4B 95.556 90 4 0 2531 2620 475804339 475804428 1.620000e-30 145.0
12 TraesCS4D01G227900 chr6D 93.838 568 25 6 5001 5565 273675098 273675658 0.000000e+00 846.0
13 TraesCS4D01G227900 chr6D 86.598 291 33 5 333 618 78768175 78768464 3.240000e-82 316.0
14 TraesCS4D01G227900 chr6D 84.118 340 37 12 333 656 4222348 4222010 4.190000e-81 313.0
15 TraesCS4D01G227900 chr6D 93.421 76 4 1 2628 2703 259459176 259459102 1.640000e-20 111.0
16 TraesCS4D01G227900 chr6D 98.039 51 1 0 4967 5017 273675086 273675136 7.680000e-14 89.8
17 TraesCS4D01G227900 chr2A 93.298 567 28 6 5002 5565 668491620 668491061 0.000000e+00 828.0
18 TraesCS4D01G227900 chr2A 83.962 106 16 1 130 234 737380446 737380341 3.550000e-17 100.0
19 TraesCS4D01G227900 chr5D 94.139 546 21 7 5023 5565 554884637 554884100 0.000000e+00 821.0
20 TraesCS4D01G227900 chr5D 90.128 547 22 9 5023 5565 8000814 8001332 0.000000e+00 682.0
21 TraesCS4D01G227900 chr5D 97.059 68 1 1 2628 2695 414752078 414752144 4.560000e-21 113.0
22 TraesCS4D01G227900 chr5D 80.000 95 14 5 119 211 396876916 396876825 1.290000e-06 65.8
23 TraesCS4D01G227900 chr3A 90.334 569 42 10 5001 5565 685953535 685954094 0.000000e+00 734.0
24 TraesCS4D01G227900 chr3A 90.591 457 32 7 5001 5453 23381007 23381456 3.710000e-166 595.0
25 TraesCS4D01G227900 chr3A 85.740 561 36 7 5010 5565 7293861 7293340 2.270000e-153 553.0
26 TraesCS4D01G227900 chr3A 91.560 391 21 8 5001 5387 57975422 57975804 3.820000e-146 529.0
27 TraesCS4D01G227900 chr3A 95.266 169 6 1 5398 5564 57975775 57975943 3.310000e-67 267.0
28 TraesCS4D01G227900 chr3A 93.421 76 2 3 2628 2702 712148056 712147983 5.890000e-20 110.0
29 TraesCS4D01G227900 chr3A 83.810 105 16 1 130 234 706341106 706341209 1.280000e-16 99.0
30 TraesCS4D01G227900 chr3A 97.959 49 1 0 4969 5017 23380997 23381045 9.930000e-13 86.1
31 TraesCS4D01G227900 chr3D 90.248 564 24 9 5001 5561 461891251 461890716 0.000000e+00 708.0
32 TraesCS4D01G227900 chr3D 81.884 138 16 7 143 273 421321236 421321101 2.120000e-19 108.0
33 TraesCS4D01G227900 chr3B 90.596 436 28 8 5001 5430 30537830 30537402 2.910000e-157 566.0
34 TraesCS4D01G227900 chr3B 86.986 292 30 7 333 618 741435378 741435089 6.950000e-84 322.0
35 TraesCS4D01G227900 chr3B 85.404 322 30 12 333 638 825271432 825271112 9.000000e-83 318.0
36 TraesCS4D01G227900 chr3B 97.143 70 1 1 2628 2697 99666487 99666555 3.520000e-22 117.0
37 TraesCS4D01G227900 chr2B 90.727 399 23 10 5012 5406 7574513 7574901 2.300000e-143 520.0
38 TraesCS4D01G227900 chr2B 87.097 93 11 1 143 234 34299427 34299335 2.740000e-18 104.0
39 TraesCS4D01G227900 chr1B 78.669 586 74 35 119 656 25227691 25227109 5.340000e-90 342.0
40 TraesCS4D01G227900 chr1B 82.840 169 22 4 111 273 584136896 584136729 1.620000e-30 145.0
41 TraesCS4D01G227900 chr2D 86.598 291 33 5 333 618 632084273 632083984 3.240000e-82 316.0
42 TraesCS4D01G227900 chr2D 97.101 69 1 1 2628 2696 548078335 548078268 1.270000e-21 115.0
43 TraesCS4D01G227900 chr5B 83.918 342 38 13 333 658 399296863 399297203 1.510000e-80 311.0
44 TraesCS4D01G227900 chr7D 97.143 70 1 1 2628 2697 158994399 158994331 3.520000e-22 117.0
45 TraesCS4D01G227900 chr7D 94.595 74 2 2 2628 2700 592857547 592857619 4.560000e-21 113.0
46 TraesCS4D01G227900 chrUn 84.483 116 18 0 118 233 101579771 101579886 1.270000e-21 115.0
47 TraesCS4D01G227900 chr6A 97.059 68 1 1 2628 2695 380009684 380009750 4.560000e-21 113.0
48 TraesCS4D01G227900 chr1D 97.015 67 1 1 2628 2694 101346 101411 1.640000e-20 111.0
49 TraesCS4D01G227900 chr6B 81.897 116 20 1 118 233 17528681 17528795 4.590000e-16 97.1
50 TraesCS4D01G227900 chr7B 77.778 162 28 6 119 273 108268553 108268393 5.940000e-15 93.5
51 TraesCS4D01G227900 chr7B 78.512 121 19 5 114 234 625905930 625906043 7.730000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G227900 chr4D 387328727 387334291 5564 False 10277.000000 10277 100.000000 1 5565 1 chr4D.!!$F1 5564
1 TraesCS4D01G227900 chr4A 68680839 68684893 4054 False 1909.666667 2763 91.993667 701 4930 3 chr4A.!!$F2 4229
2 TraesCS4D01G227900 chr4B 475802447 475806992 4545 False 878.833333 2730 90.302167 746 4911 6 chr4B.!!$F2 4165
3 TraesCS4D01G227900 chr6D 273675086 273675658 572 False 467.900000 846 95.938500 4967 5565 2 chr6D.!!$F2 598
4 TraesCS4D01G227900 chr2A 668491061 668491620 559 True 828.000000 828 93.298000 5002 5565 1 chr2A.!!$R1 563
5 TraesCS4D01G227900 chr5D 554884100 554884637 537 True 821.000000 821 94.139000 5023 5565 1 chr5D.!!$R2 542
6 TraesCS4D01G227900 chr5D 8000814 8001332 518 False 682.000000 682 90.128000 5023 5565 1 chr5D.!!$F1 542
7 TraesCS4D01G227900 chr3A 685953535 685954094 559 False 734.000000 734 90.334000 5001 5565 1 chr3A.!!$F1 564
8 TraesCS4D01G227900 chr3A 7293340 7293861 521 True 553.000000 553 85.740000 5010 5565 1 chr3A.!!$R1 555
9 TraesCS4D01G227900 chr3A 57975422 57975943 521 False 398.000000 529 93.413000 5001 5564 2 chr3A.!!$F4 563
10 TraesCS4D01G227900 chr3D 461890716 461891251 535 True 708.000000 708 90.248000 5001 5561 1 chr3D.!!$R2 560
11 TraesCS4D01G227900 chr1B 25227109 25227691 582 True 342.000000 342 78.669000 119 656 1 chr1B.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 1010 0.030705 CTCTCCTCCCCCTGGATCAA 60.031 60.000 0.00 0.00 40.80 2.57 F
1096 1163 0.105224 CCGTTTGTTTGGTTTCCCCC 59.895 55.000 0.00 0.00 0.00 5.40 F
1480 1549 0.457035 CGGCGTTACCTAGTGCCTTA 59.543 55.000 0.00 0.00 45.36 2.69 F
1549 1618 0.469331 TCGTCGGGCTTGGATAGGAT 60.469 55.000 0.00 0.00 0.00 3.24 F
2355 2430 0.579156 GGCAAGAAGCTATCGCGAAG 59.421 55.000 15.24 13.26 44.79 3.79 F
3980 4236 1.909302 TGGCCAAGGAGAGGTAAAGAG 59.091 52.381 0.61 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 2057 0.667487 TCAGCGCTTCCAGTTTCTCG 60.667 55.000 7.5 0.0 0.00 4.04 R
2328 2403 1.475403 TAGCTTCTTGCCTAGCTCGT 58.525 50.000 0.0 0.0 44.05 4.18 R
3305 3549 0.916358 ATAGCCAGGCAGAGGGTGTT 60.916 55.000 15.8 0.0 37.45 3.32 R
3358 3603 1.065600 GCGCAGGTGCAACTTTTCA 59.934 52.632 0.0 0.0 42.21 2.69 R
4003 4259 4.797912 AGAAGAACAAAAGGGGAACTCT 57.202 40.909 0.0 0.0 0.00 3.24 R
4951 5596 0.250295 TTGGGGTTTGCAGACGAGAG 60.250 55.000 0.7 0.0 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.996292 CTGGAAGTGAAAGCGATCGA 58.004 50.000 21.57 0.00 0.00 3.59
32 33 2.544685 CTGGAAGTGAAAGCGATCGAT 58.455 47.619 21.57 10.64 0.00 3.59
33 34 2.270923 TGGAAGTGAAAGCGATCGATG 58.729 47.619 21.57 0.00 0.00 3.84
34 35 2.094234 TGGAAGTGAAAGCGATCGATGA 60.094 45.455 21.57 0.00 0.00 2.92
35 36 3.126831 GGAAGTGAAAGCGATCGATGAT 58.873 45.455 21.57 5.30 0.00 2.45
36 37 3.060003 GGAAGTGAAAGCGATCGATGATG 60.060 47.826 21.57 0.00 0.00 3.07
37 38 3.443099 AGTGAAAGCGATCGATGATGA 57.557 42.857 21.57 0.00 0.00 2.92
38 39 3.987547 AGTGAAAGCGATCGATGATGAT 58.012 40.909 21.57 0.00 0.00 2.45
39 40 3.739810 AGTGAAAGCGATCGATGATGATG 59.260 43.478 21.57 0.00 0.00 3.07
40 41 3.737774 GTGAAAGCGATCGATGATGATGA 59.262 43.478 21.57 0.00 0.00 2.92
41 42 4.388165 GTGAAAGCGATCGATGATGATGAT 59.612 41.667 21.57 0.00 0.00 2.45
42 43 4.387862 TGAAAGCGATCGATGATGATGATG 59.612 41.667 21.57 0.00 0.00 3.07
43 44 3.863142 AGCGATCGATGATGATGATGA 57.137 42.857 21.57 0.00 0.00 2.92
44 45 4.388378 AGCGATCGATGATGATGATGAT 57.612 40.909 21.57 0.00 0.00 2.45
45 46 4.113354 AGCGATCGATGATGATGATGATG 58.887 43.478 21.57 0.00 0.00 3.07
46 47 4.110482 GCGATCGATGATGATGATGATGA 58.890 43.478 21.57 0.00 0.00 2.92
47 48 4.745620 GCGATCGATGATGATGATGATGAT 59.254 41.667 21.57 0.00 0.00 2.45
48 49 5.919141 GCGATCGATGATGATGATGATGATA 59.081 40.000 21.57 0.00 0.00 2.15
49 50 6.088350 GCGATCGATGATGATGATGATGATAG 59.912 42.308 21.57 0.00 0.00 2.08
50 51 6.583050 CGATCGATGATGATGATGATGATAGG 59.417 42.308 10.26 0.00 0.00 2.57
51 52 7.521748 CGATCGATGATGATGATGATGATAGGA 60.522 40.741 10.26 0.00 0.00 2.94
52 53 7.598759 TCGATGATGATGATGATGATAGGAT 57.401 36.000 0.00 0.00 0.00 3.24
53 54 7.434492 TCGATGATGATGATGATGATAGGATG 58.566 38.462 0.00 0.00 0.00 3.51
54 55 6.146347 CGATGATGATGATGATGATAGGATGC 59.854 42.308 0.00 0.00 0.00 3.91
55 56 6.308015 TGATGATGATGATGATAGGATGCA 57.692 37.500 0.00 0.00 0.00 3.96
56 57 6.113411 TGATGATGATGATGATAGGATGCAC 58.887 40.000 0.00 0.00 0.00 4.57
57 58 4.501071 TGATGATGATGATAGGATGCACG 58.499 43.478 0.00 0.00 0.00 5.34
58 59 4.020839 TGATGATGATGATAGGATGCACGT 60.021 41.667 0.00 0.00 0.00 4.49
59 60 3.917988 TGATGATGATAGGATGCACGTC 58.082 45.455 0.00 0.00 0.00 4.34
60 61 3.321682 TGATGATGATAGGATGCACGTCA 59.678 43.478 0.00 0.00 33.77 4.35
61 62 3.817709 TGATGATAGGATGCACGTCAA 57.182 42.857 0.00 0.00 0.00 3.18
62 63 3.721035 TGATGATAGGATGCACGTCAAG 58.279 45.455 0.00 0.00 0.00 3.02
63 64 3.132824 TGATGATAGGATGCACGTCAAGT 59.867 43.478 0.00 0.00 0.00 3.16
71 72 3.642755 CACGTCAAGTGCCCAGAC 58.357 61.111 0.00 0.00 44.72 3.51
74 75 3.952811 GTCAAGTGCCCAGACGTC 58.047 61.111 7.70 7.70 0.00 4.34
75 76 2.022129 GTCAAGTGCCCAGACGTCG 61.022 63.158 10.46 5.16 0.00 5.12
76 77 3.414700 CAAGTGCCCAGACGTCGC 61.415 66.667 10.46 8.48 0.00 5.19
77 78 4.681978 AAGTGCCCAGACGTCGCC 62.682 66.667 10.46 2.54 0.00 5.54
84 85 3.506096 CAGACGTCGCCGCCTCTA 61.506 66.667 10.46 0.00 37.70 2.43
85 86 2.749044 AGACGTCGCCGCCTCTAA 60.749 61.111 10.46 0.00 37.70 2.10
86 87 2.180017 GACGTCGCCGCCTCTAAA 59.820 61.111 0.00 0.00 37.70 1.85
87 88 1.444895 GACGTCGCCGCCTCTAAAA 60.445 57.895 0.00 0.00 37.70 1.52
88 89 1.005867 ACGTCGCCGCCTCTAAAAA 60.006 52.632 0.00 0.00 37.70 1.94
106 107 3.847671 AAAATAGCCTAGGTCCTCTGC 57.152 47.619 11.31 0.00 0.00 4.26
107 108 1.723288 AATAGCCTAGGTCCTCTGCC 58.277 55.000 11.31 0.00 0.00 4.85
108 109 0.863956 ATAGCCTAGGTCCTCTGCCT 59.136 55.000 11.31 0.00 40.00 4.75
109 110 0.186386 TAGCCTAGGTCCTCTGCCTC 59.814 60.000 11.31 0.00 37.54 4.70
110 111 2.137528 GCCTAGGTCCTCTGCCTCC 61.138 68.421 11.31 0.00 37.54 4.30
111 112 1.623625 CCTAGGTCCTCTGCCTCCT 59.376 63.158 0.00 0.00 37.54 3.69
112 113 0.758685 CCTAGGTCCTCTGCCTCCTG 60.759 65.000 0.00 0.00 37.54 3.86
113 114 1.381872 TAGGTCCTCTGCCTCCTGC 60.382 63.158 0.00 0.00 37.54 4.85
114 115 2.880629 TAGGTCCTCTGCCTCCTGCC 62.881 65.000 0.00 0.00 40.16 4.85
115 116 4.154347 GTCCTCTGCCTCCTGCCG 62.154 72.222 0.00 0.00 40.16 5.69
156 157 2.696125 CCCTAGGGCCATGGTGGT 60.696 66.667 16.90 0.02 40.46 4.16
157 158 2.316586 CCCTAGGGCCATGGTGGTT 61.317 63.158 16.90 0.00 40.46 3.67
158 159 1.076777 CCTAGGGCCATGGTGGTTG 60.077 63.158 14.67 1.50 40.46 3.77
167 168 0.039472 CATGGTGGTTGGGTGGATCA 59.961 55.000 0.00 0.00 0.00 2.92
168 169 0.039618 ATGGTGGTTGGGTGGATCAC 59.960 55.000 0.00 0.00 0.00 3.06
169 170 1.065410 TGGTGGTTGGGTGGATCACT 61.065 55.000 0.00 0.00 34.40 3.41
171 172 0.110486 GTGGTTGGGTGGATCACTGT 59.890 55.000 0.00 0.00 34.40 3.55
172 173 0.400213 TGGTTGGGTGGATCACTGTC 59.600 55.000 0.00 0.00 34.40 3.51
173 174 0.322546 GGTTGGGTGGATCACTGTCC 60.323 60.000 0.00 0.00 38.81 4.02
174 175 0.693049 GTTGGGTGGATCACTGTCCT 59.307 55.000 0.00 0.00 39.12 3.85
175 176 1.073923 GTTGGGTGGATCACTGTCCTT 59.926 52.381 0.00 0.00 39.12 3.36
178 179 0.326264 GGTGGATCACTGTCCTTGCT 59.674 55.000 0.00 0.00 39.12 3.91
179 180 1.555075 GGTGGATCACTGTCCTTGCTA 59.445 52.381 0.00 0.00 39.12 3.49
181 182 2.234908 GTGGATCACTGTCCTTGCTAGT 59.765 50.000 0.00 0.00 39.12 2.57
202 203 2.711978 GGAGGGCTCCGTTTTTAGAT 57.288 50.000 0.00 0.00 40.36 1.98
234 235 4.345854 AGTTTTGTTAGGGTTTGTGTCCA 58.654 39.130 0.00 0.00 0.00 4.02
236 237 4.993029 TTTGTTAGGGTTTGTGTCCAAG 57.007 40.909 0.00 0.00 0.00 3.61
247 253 0.033504 GTGTCCAAGAAGGCGAGACA 59.966 55.000 0.00 0.00 37.29 3.41
248 254 0.976641 TGTCCAAGAAGGCGAGACAT 59.023 50.000 0.00 0.00 37.29 3.06
250 256 1.066858 GTCCAAGAAGGCGAGACATCA 60.067 52.381 0.00 0.00 37.29 3.07
254 260 1.139734 GAAGGCGAGACATCAGCGA 59.860 57.895 0.00 0.00 0.00 4.93
261 267 1.681538 GAGACATCAGCGACTCCCTA 58.318 55.000 0.00 0.00 0.00 3.53
268 274 2.735151 TCAGCGACTCCCTAAAGATGA 58.265 47.619 0.00 0.00 0.00 2.92
270 276 3.706594 TCAGCGACTCCCTAAAGATGAAT 59.293 43.478 0.00 0.00 0.00 2.57
271 277 4.893524 TCAGCGACTCCCTAAAGATGAATA 59.106 41.667 0.00 0.00 0.00 1.75
273 279 6.042093 TCAGCGACTCCCTAAAGATGAATAAT 59.958 38.462 0.00 0.00 0.00 1.28
274 280 6.146837 CAGCGACTCCCTAAAGATGAATAATG 59.853 42.308 0.00 0.00 0.00 1.90
275 281 5.992217 GCGACTCCCTAAAGATGAATAATGT 59.008 40.000 0.00 0.00 0.00 2.71
276 282 6.483640 GCGACTCCCTAAAGATGAATAATGTT 59.516 38.462 0.00 0.00 0.00 2.71
277 283 7.307455 GCGACTCCCTAAAGATGAATAATGTTC 60.307 40.741 0.00 0.00 0.00 3.18
278 284 7.096023 CGACTCCCTAAAGATGAATAATGTTCG 60.096 40.741 0.00 0.00 0.00 3.95
279 285 7.792032 ACTCCCTAAAGATGAATAATGTTCGA 58.208 34.615 0.00 0.00 0.00 3.71
280 286 7.928706 ACTCCCTAAAGATGAATAATGTTCGAG 59.071 37.037 0.00 0.00 0.00 4.04
281 287 7.217200 TCCCTAAAGATGAATAATGTTCGAGG 58.783 38.462 0.00 0.00 30.14 4.63
282 288 6.428159 CCCTAAAGATGAATAATGTTCGAGGG 59.572 42.308 0.00 0.00 37.89 4.30
286 292 1.295792 GAATAATGTTCGAGGGCGCA 58.704 50.000 10.83 0.00 37.46 6.09
288 294 1.229428 ATAATGTTCGAGGGCGCATG 58.771 50.000 10.83 0.00 37.46 4.06
303 354 3.717294 ATGGGGTGTGTCTCCGGC 61.717 66.667 0.00 0.00 40.23 6.13
312 363 4.500116 GTCTCCGGCAGACCTCGC 62.500 72.222 18.10 0.00 45.47 5.03
318 369 4.162690 GGCAGACCTCGCGGGATT 62.163 66.667 8.08 0.00 38.76 3.01
319 370 2.586357 GCAGACCTCGCGGGATTC 60.586 66.667 8.08 2.87 38.76 2.52
320 371 2.892640 CAGACCTCGCGGGATTCA 59.107 61.111 8.08 0.00 38.76 2.57
321 372 1.227089 CAGACCTCGCGGGATTCAG 60.227 63.158 8.08 0.00 38.76 3.02
322 373 1.682684 AGACCTCGCGGGATTCAGT 60.683 57.895 8.08 0.00 38.76 3.41
323 374 1.227002 GACCTCGCGGGATTCAGTC 60.227 63.158 8.08 1.05 38.76 3.51
324 375 2.278857 CCTCGCGGGATTCAGTCG 60.279 66.667 8.08 0.00 37.23 4.18
325 376 2.278857 CTCGCGGGATTCAGTCGG 60.279 66.667 0.00 0.00 0.00 4.79
326 377 3.064987 CTCGCGGGATTCAGTCGGT 62.065 63.158 0.00 0.00 0.00 4.69
327 378 2.885644 CGCGGGATTCAGTCGGTG 60.886 66.667 0.00 0.00 0.00 4.94
328 379 3.195698 GCGGGATTCAGTCGGTGC 61.196 66.667 0.00 0.00 0.00 5.01
329 380 2.579201 CGGGATTCAGTCGGTGCT 59.421 61.111 0.00 0.00 0.00 4.40
330 381 1.079127 CGGGATTCAGTCGGTGCTT 60.079 57.895 0.00 0.00 0.00 3.91
331 382 1.361668 CGGGATTCAGTCGGTGCTTG 61.362 60.000 0.00 0.00 0.00 4.01
346 397 3.572255 GGTGCTTGTCTTTGGTGGATTTA 59.428 43.478 0.00 0.00 0.00 1.40
354 405 4.941873 GTCTTTGGTGGATTTACTCGGATT 59.058 41.667 0.00 0.00 0.00 3.01
356 407 6.007703 TCTTTGGTGGATTTACTCGGATTTT 58.992 36.000 0.00 0.00 0.00 1.82
385 440 0.943673 TACGTTCGTGTGTCTTCGGA 59.056 50.000 8.14 0.00 0.00 4.55
409 464 2.923643 GATCCTTCTGATCTACGCGTC 58.076 52.381 18.63 0.56 45.46 5.19
413 468 2.854777 CCTTCTGATCTACGCGTCTTTG 59.145 50.000 18.63 4.95 0.00 2.77
419 474 3.128764 TGATCTACGCGTCTTTGTCATCT 59.871 43.478 18.63 0.00 0.00 2.90
439 494 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
441 496 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
442 497 2.186160 CGGTTGCTGTTCTGGTGCA 61.186 57.895 0.00 0.00 34.69 4.57
446 501 1.727511 TTGCTGTTCTGGTGCACTGC 61.728 55.000 17.98 5.74 36.37 4.40
455 510 0.909133 TGGTGCACTGCTCCTATGGA 60.909 55.000 17.98 0.14 42.02 3.41
485 540 1.228490 ACGACCTCCCGACTGTCTT 60.228 57.895 6.21 0.00 0.00 3.01
489 544 2.657143 GACCTCCCGACTGTCTTCTAT 58.343 52.381 6.21 0.00 0.00 1.98
498 553 6.014840 TCCCGACTGTCTTCTATAACAAGTTT 60.015 38.462 6.21 0.00 0.00 2.66
509 564 0.755327 AACAAGTTTTGCCCGGCTCT 60.755 50.000 11.61 1.30 0.00 4.09
510 565 0.109723 ACAAGTTTTGCCCGGCTCTA 59.890 50.000 11.61 0.00 0.00 2.43
515 570 2.852495 TTTTGCCCGGCTCTAGCGAG 62.852 60.000 11.61 0.00 43.26 5.03
522 577 2.196229 GCTCTAGCGAGGGAGGGA 59.804 66.667 0.00 0.00 37.75 4.20
561 616 2.551912 CGGCCCGTTTCAGTGCTTT 61.552 57.895 0.00 0.00 0.00 3.51
584 639 0.036105 TCGTCGCTAGGTGGTCTACA 60.036 55.000 0.00 0.00 0.00 2.74
585 640 0.377554 CGTCGCTAGGTGGTCTACAG 59.622 60.000 0.00 0.00 0.00 2.74
590 645 3.390311 TCGCTAGGTGGTCTACAGATCTA 59.610 47.826 0.00 0.00 0.00 1.98
631 694 9.865321 ATTTTTAGTGTTCCATGATTGAAGATG 57.135 29.630 0.00 0.00 0.00 2.90
632 695 8.634335 TTTTAGTGTTCCATGATTGAAGATGA 57.366 30.769 0.00 0.00 0.00 2.92
633 696 8.812513 TTTAGTGTTCCATGATTGAAGATGAT 57.187 30.769 0.00 0.00 0.00 2.45
634 697 9.904198 TTTAGTGTTCCATGATTGAAGATGATA 57.096 29.630 0.00 0.00 0.00 2.15
635 698 9.551734 TTAGTGTTCCATGATTGAAGATGATAG 57.448 33.333 0.00 0.00 0.00 2.08
636 699 7.799081 AGTGTTCCATGATTGAAGATGATAGA 58.201 34.615 0.00 0.00 0.00 1.98
637 700 8.438373 AGTGTTCCATGATTGAAGATGATAGAT 58.562 33.333 0.00 0.00 0.00 1.98
638 701 9.064706 GTGTTCCATGATTGAAGATGATAGATT 57.935 33.333 0.00 0.00 0.00 2.40
639 702 9.063615 TGTTCCATGATTGAAGATGATAGATTG 57.936 33.333 0.00 0.00 0.00 2.67
640 703 8.512956 GTTCCATGATTGAAGATGATAGATTGG 58.487 37.037 0.00 0.00 0.00 3.16
641 704 7.981142 TCCATGATTGAAGATGATAGATTGGA 58.019 34.615 0.00 0.00 0.00 3.53
642 705 8.612145 TCCATGATTGAAGATGATAGATTGGAT 58.388 33.333 0.00 0.00 0.00 3.41
643 706 9.244292 CCATGATTGAAGATGATAGATTGGATT 57.756 33.333 0.00 0.00 0.00 3.01
672 735 5.733620 AAAGAAGTCGTACAATAGGACCA 57.266 39.130 0.00 0.00 42.78 4.02
673 736 4.715527 AGAAGTCGTACAATAGGACCAC 57.284 45.455 0.00 1.60 42.78 4.16
674 737 4.342359 AGAAGTCGTACAATAGGACCACT 58.658 43.478 0.00 3.42 42.78 4.00
675 738 4.158025 AGAAGTCGTACAATAGGACCACTG 59.842 45.833 0.00 0.00 42.78 3.66
676 739 2.758979 AGTCGTACAATAGGACCACTGG 59.241 50.000 0.00 0.00 42.78 4.00
677 740 2.756760 GTCGTACAATAGGACCACTGGA 59.243 50.000 0.71 0.00 37.55 3.86
678 741 2.756760 TCGTACAATAGGACCACTGGAC 59.243 50.000 0.71 0.00 0.00 4.02
679 742 2.758979 CGTACAATAGGACCACTGGACT 59.241 50.000 0.71 2.27 0.00 3.85
680 743 3.949754 CGTACAATAGGACCACTGGACTA 59.050 47.826 0.71 4.52 0.00 2.59
681 744 4.036498 CGTACAATAGGACCACTGGACTAG 59.964 50.000 0.71 0.00 0.00 2.57
682 745 3.375699 ACAATAGGACCACTGGACTAGG 58.624 50.000 0.71 3.93 0.00 3.02
683 746 2.700897 CAATAGGACCACTGGACTAGGG 59.299 54.545 0.71 0.00 0.00 3.53
684 747 0.032416 TAGGACCACTGGACTAGGGC 60.032 60.000 0.71 0.00 0.00 5.19
685 748 1.612442 GGACCACTGGACTAGGGCA 60.612 63.158 0.71 0.00 29.65 5.36
686 749 1.198759 GGACCACTGGACTAGGGCAA 61.199 60.000 0.71 0.00 29.65 4.52
687 750 0.690762 GACCACTGGACTAGGGCAAA 59.309 55.000 0.71 0.00 0.00 3.68
688 751 1.073284 GACCACTGGACTAGGGCAAAA 59.927 52.381 0.71 0.00 0.00 2.44
689 752 1.073923 ACCACTGGACTAGGGCAAAAG 59.926 52.381 0.71 0.00 0.00 2.27
690 753 1.073923 CCACTGGACTAGGGCAAAAGT 59.926 52.381 0.00 0.00 0.00 2.66
691 754 2.427506 CACTGGACTAGGGCAAAAGTC 58.572 52.381 0.00 4.96 41.16 3.01
692 755 2.039084 CACTGGACTAGGGCAAAAGTCT 59.961 50.000 11.35 0.00 41.53 3.24
693 756 2.711547 ACTGGACTAGGGCAAAAGTCTT 59.288 45.455 11.35 0.00 41.53 3.01
694 757 3.138468 ACTGGACTAGGGCAAAAGTCTTT 59.862 43.478 11.35 0.00 41.53 2.52
695 758 4.145052 CTGGACTAGGGCAAAAGTCTTTT 58.855 43.478 4.66 4.66 41.53 2.27
696 759 4.542697 TGGACTAGGGCAAAAGTCTTTTT 58.457 39.130 7.87 0.00 41.53 1.94
718 781 1.777941 TAAACACCCGGGCAAAAGTT 58.222 45.000 24.08 14.91 0.00 2.66
733 796 1.636148 AAGTTAGGACGGTACTGGCA 58.364 50.000 10.42 0.00 0.00 4.92
736 799 2.071540 GTTAGGACGGTACTGGCAAAC 58.928 52.381 10.42 9.41 0.00 2.93
741 804 2.542205 GGACGGTACTGGCAAACAAAAC 60.542 50.000 10.42 0.00 0.00 2.43
742 805 1.406180 ACGGTACTGGCAAACAAAACC 59.594 47.619 6.65 0.00 32.95 3.27
743 806 1.598430 CGGTACTGGCAAACAAAACCG 60.598 52.381 0.00 0.00 45.29 4.44
744 807 1.677052 GGTACTGGCAAACAAAACCGA 59.323 47.619 0.00 0.00 0.00 4.69
748 811 1.676006 CTGGCAAACAAAACCGAGACT 59.324 47.619 0.00 0.00 0.00 3.24
776 840 7.545265 CACCCATCGATTTATGTGATTTGTTTT 59.455 33.333 0.00 0.00 0.00 2.43
784 848 3.971245 TGTGATTTGTTTTATGGGCCC 57.029 42.857 17.59 17.59 0.00 5.80
805 869 1.005450 TGGAATAAGGCCCAACAGGTC 59.995 52.381 0.00 0.00 42.50 3.85
860 924 1.226974 GCGCACAGAGCCTCGAATA 60.227 57.895 0.30 0.00 41.38 1.75
879 943 2.305858 AGGTGTCCTACTCGGAAAGT 57.694 50.000 0.00 0.00 45.32 2.66
924 991 1.743394 CGCAAATAAGAACTCCACCCC 59.257 52.381 0.00 0.00 0.00 4.95
925 992 2.618045 CGCAAATAAGAACTCCACCCCT 60.618 50.000 0.00 0.00 0.00 4.79
935 1002 4.825679 CCACCCCTCTCCTCCCCC 62.826 77.778 0.00 0.00 0.00 5.40
943 1010 0.030705 CTCTCCTCCCCCTGGATCAA 60.031 60.000 0.00 0.00 40.80 2.57
1096 1163 0.105224 CCGTTTGTTTGGTTTCCCCC 59.895 55.000 0.00 0.00 0.00 5.40
1471 1540 1.134310 CCCTAATTTCCGGCGTTACCT 60.134 52.381 6.01 0.00 35.61 3.08
1472 1541 2.102925 CCCTAATTTCCGGCGTTACCTA 59.897 50.000 6.01 0.00 35.61 3.08
1477 1546 2.202837 CCGGCGTTACCTAGTGCC 60.203 66.667 6.01 0.00 44.09 5.01
1478 1547 2.718073 CCGGCGTTACCTAGTGCCT 61.718 63.158 6.01 0.00 45.36 4.75
1479 1548 1.217244 CGGCGTTACCTAGTGCCTT 59.783 57.895 0.00 0.00 45.36 4.35
1480 1549 0.457035 CGGCGTTACCTAGTGCCTTA 59.543 55.000 0.00 0.00 45.36 2.69
1481 1550 1.068127 CGGCGTTACCTAGTGCCTTAT 59.932 52.381 0.00 0.00 45.36 1.73
1482 1551 2.480845 GGCGTTACCTAGTGCCTTATG 58.519 52.381 0.00 0.00 44.16 1.90
1483 1552 1.865340 GCGTTACCTAGTGCCTTATGC 59.135 52.381 0.00 0.00 41.77 3.14
1484 1553 2.480845 CGTTACCTAGTGCCTTATGCC 58.519 52.381 0.00 0.00 40.16 4.40
1485 1554 2.102588 CGTTACCTAGTGCCTTATGCCT 59.897 50.000 0.00 0.00 40.16 4.75
1486 1555 3.729966 GTTACCTAGTGCCTTATGCCTC 58.270 50.000 0.00 0.00 40.16 4.70
1487 1556 0.753262 ACCTAGTGCCTTATGCCTCG 59.247 55.000 0.00 0.00 40.16 4.63
1488 1557 0.753262 CCTAGTGCCTTATGCCTCGT 59.247 55.000 0.00 0.00 40.16 4.18
1503 1572 1.985447 CTCGTACCGGCGCAGAAGTA 61.985 60.000 10.83 0.52 0.00 2.24
1517 1586 5.683859 CGCAGAAGTATAGGATTTCAATGC 58.316 41.667 0.00 0.00 0.00 3.56
1524 1593 7.559590 AGTATAGGATTTCAATGCAACTGTC 57.440 36.000 0.00 0.00 0.00 3.51
1549 1618 0.469331 TCGTCGGGCTTGGATAGGAT 60.469 55.000 0.00 0.00 0.00 3.24
1589 1658 1.599797 GGCGTTTGGTGGCAGTACT 60.600 57.895 0.00 0.00 0.00 2.73
1590 1659 1.574428 GCGTTTGGTGGCAGTACTG 59.426 57.895 18.93 18.93 0.00 2.74
1646 1719 7.338449 TGCTAGTAAATTGGGAATTGTAGTTCC 59.662 37.037 0.00 0.00 45.61 3.62
1898 1973 4.307432 CTGTGACATACGACAAGAAGGTT 58.693 43.478 0.00 0.00 0.00 3.50
1982 2057 4.488879 GTGAAACTGATGATGAAAAGCCC 58.511 43.478 0.00 0.00 0.00 5.19
2057 2132 2.072487 CCATGTCCCTCCGGGTGAT 61.072 63.158 0.00 0.00 44.74 3.06
2129 2204 5.723887 CCTTAGGGCTCTAGGTTGATATGAT 59.276 44.000 1.60 0.00 0.00 2.45
2328 2403 3.170717 ACGGTTGTCTATGGAGGAAGAA 58.829 45.455 0.00 0.00 0.00 2.52
2343 2418 2.353803 GGAAGAACGAGCTAGGCAAGAA 60.354 50.000 0.00 0.00 0.00 2.52
2355 2430 0.579156 GGCAAGAAGCTATCGCGAAG 59.421 55.000 15.24 13.26 44.79 3.79
2418 2493 4.070009 CTGATGCTATTATGGCTGAAGCA 58.930 43.478 4.43 0.00 46.30 3.91
2502 2577 3.118665 CCAATGCCTAATTCCAAGTTGGG 60.119 47.826 21.85 5.67 38.32 4.12
2620 2820 6.949352 ATAATGGTGCTTCTGTATTTCCTG 57.051 37.500 0.00 0.00 0.00 3.86
2621 2821 2.436417 TGGTGCTTCTGTATTTCCTGC 58.564 47.619 0.00 0.00 0.00 4.85
2626 2826 3.943381 TGCTTCTGTATTTCCTGCTGATG 59.057 43.478 0.00 0.00 0.00 3.07
2627 2827 3.243002 GCTTCTGTATTTCCTGCTGATGC 60.243 47.826 0.00 0.00 40.20 3.91
2628 2828 3.920231 TCTGTATTTCCTGCTGATGCT 57.080 42.857 0.00 0.00 40.48 3.79
2629 2829 4.226427 TCTGTATTTCCTGCTGATGCTT 57.774 40.909 0.00 0.00 40.48 3.91
2632 2832 5.761726 TCTGTATTTCCTGCTGATGCTTATG 59.238 40.000 0.00 0.00 40.48 1.90
2633 2833 5.439721 TGTATTTCCTGCTGATGCTTATGT 58.560 37.500 0.00 0.00 40.48 2.29
2634 2834 6.591001 TGTATTTCCTGCTGATGCTTATGTA 58.409 36.000 0.00 0.00 40.48 2.29
2635 2835 6.483307 TGTATTTCCTGCTGATGCTTATGTAC 59.517 38.462 0.00 0.00 40.48 2.90
2636 2836 4.760530 TTCCTGCTGATGCTTATGTACT 57.239 40.909 0.00 0.00 40.48 2.73
2637 2837 5.869649 TTCCTGCTGATGCTTATGTACTA 57.130 39.130 0.00 0.00 40.48 1.82
2638 2838 5.869649 TCCTGCTGATGCTTATGTACTAA 57.130 39.130 0.00 0.00 40.48 2.24
2639 2839 5.601662 TCCTGCTGATGCTTATGTACTAAC 58.398 41.667 0.00 0.00 40.48 2.34
2640 2840 5.363868 TCCTGCTGATGCTTATGTACTAACT 59.636 40.000 0.00 0.00 40.48 2.24
2641 2841 6.051717 CCTGCTGATGCTTATGTACTAACTT 58.948 40.000 0.00 0.00 40.48 2.66
2642 2842 6.540189 CCTGCTGATGCTTATGTACTAACTTT 59.460 38.462 0.00 0.00 40.48 2.66
2643 2843 7.710907 CCTGCTGATGCTTATGTACTAACTTTA 59.289 37.037 0.00 0.00 40.48 1.85
2644 2844 9.265901 CTGCTGATGCTTATGTACTAACTTTAT 57.734 33.333 0.00 0.00 40.48 1.40
2681 2881 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
2682 2882 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2683 2883 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2684 2884 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2685 2885 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2686 2886 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2687 2887 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2688 2888 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2689 2889 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2690 2890 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2707 2907 4.280174 GGAGGGAGTATAACACTATTGCGA 59.720 45.833 0.00 0.00 37.72 5.10
2716 2916 9.607285 AGTATAACACTATTGCGAAACTTTTTG 57.393 29.630 0.00 0.00 34.98 2.44
2720 2920 6.435428 ACACTATTGCGAAACTTTTTGTAGG 58.565 36.000 0.00 0.00 0.00 3.18
2730 2930 6.019881 CGAAACTTTTTGTAGGGAAGCAAAAG 60.020 38.462 0.00 0.00 42.88 2.27
2732 2932 6.149129 ACTTTTTGTAGGGAAGCAAAAGAG 57.851 37.500 9.15 7.97 42.88 2.85
2733 2933 5.656859 ACTTTTTGTAGGGAAGCAAAAGAGT 59.343 36.000 9.15 8.42 42.88 3.24
2821 3022 6.319658 ACATCCCTGTAACAATATGCTTTGAG 59.680 38.462 2.35 0.00 32.49 3.02
2833 3034 8.554528 ACAATATGCTTTGAGAATGAAGTATCG 58.445 33.333 2.35 0.00 31.92 2.92
2943 3144 4.593597 GCAATCATTTGGTTTGCTGATG 57.406 40.909 10.12 0.00 41.86 3.07
2963 3167 2.107031 TGAATCTGGGTGGCATCTATGG 59.893 50.000 0.00 0.00 0.00 2.74
3301 3545 5.904941 TGTGCAATTTCACTGAAACTCATT 58.095 33.333 9.63 0.00 37.81 2.57
3305 3549 5.978919 GCAATTTCACTGAAACTCATTGACA 59.021 36.000 15.28 0.00 36.08 3.58
3342 3587 6.990798 TGGCTATTTGTTTGTTTGATGATCA 58.009 32.000 0.00 0.00 0.00 2.92
3343 3588 7.613585 TGGCTATTTGTTTGTTTGATGATCAT 58.386 30.769 8.25 8.25 0.00 2.45
3358 3603 6.475504 TGATGATCATCAACCAAACTGTACT 58.524 36.000 31.46 0.00 44.14 2.73
3420 3666 7.761249 ACAATTCTTTTGTGAAGAAACCTTGAG 59.239 33.333 14.99 2.80 39.43 3.02
3452 3698 7.605309 GCATTAACTAACCTTAACAGTAGGTGT 59.395 37.037 0.00 0.00 45.17 4.16
3501 3747 9.829507 TCCAGAAGATAAATTTCAGAGATTCTC 57.170 33.333 5.49 5.49 0.00 2.87
3518 3764 8.519526 AGAGATTCTCGGTTGTCTTATATCATC 58.480 37.037 8.01 0.00 35.36 2.92
3519 3765 8.415950 AGATTCTCGGTTGTCTTATATCATCT 57.584 34.615 0.00 0.00 0.00 2.90
3567 3820 7.334858 AGGTTGAATTTCTCCTGTCTCTTATC 58.665 38.462 11.07 0.00 0.00 1.75
3656 3912 4.348486 ACTTCTGTCTTAGCCTCAGATCA 58.652 43.478 0.00 0.00 37.91 2.92
3678 3934 7.872163 TCAAAATGTTTACATGTTCTGATGC 57.128 32.000 2.30 0.00 36.56 3.91
3679 3935 7.432059 TCAAAATGTTTACATGTTCTGATGCA 58.568 30.769 2.30 0.00 36.56 3.96
3724 3980 4.841422 CTCTTCAAATGTCTGTCCAGGAT 58.159 43.478 0.00 0.00 0.00 3.24
3850 4106 8.691797 ACTTAAAACCAGTGTCATGTAAACATT 58.308 29.630 0.00 0.00 33.61 2.71
3980 4236 1.909302 TGGCCAAGGAGAGGTAAAGAG 59.091 52.381 0.61 0.00 0.00 2.85
4003 4259 6.684538 AGCTTTACCTCTCTCCTATCCTTAA 58.315 40.000 0.00 0.00 0.00 1.85
4042 4298 1.139654 TCTAGTCCAGTGATGGCATGC 59.860 52.381 9.90 9.90 0.00 4.06
4076 4333 8.455682 CAGTAACAGTGTTCTTGTCCTTTTTAA 58.544 33.333 12.82 0.00 0.00 1.52
4078 4335 6.827586 ACAGTGTTCTTGTCCTTTTTAACA 57.172 33.333 0.00 0.00 0.00 2.41
4080 4337 7.480810 ACAGTGTTCTTGTCCTTTTTAACATC 58.519 34.615 0.00 0.00 0.00 3.06
4117 4465 7.729124 TTATAAGGCTGTAAGGTTCTACACT 57.271 36.000 0.00 0.00 0.00 3.55
4120 4468 5.662674 AGGCTGTAAGGTTCTACACTTAG 57.337 43.478 0.00 0.00 30.45 2.18
4126 4479 6.631016 TGTAAGGTTCTACACTTAGCATCAG 58.369 40.000 0.00 0.00 30.45 2.90
4137 4490 5.698545 ACACTTAGCATCAGAGTTTTGAGTC 59.301 40.000 0.00 0.00 0.00 3.36
4156 4509 3.087781 GTCCTAGAGTTGTACCCTCGTT 58.912 50.000 0.00 0.00 34.08 3.85
4169 4522 4.295141 ACCCTCGTTATTTGGTTCATGA 57.705 40.909 0.00 0.00 0.00 3.07
4230 4583 3.957497 TGGTGACTGGCAAACAAAACTAT 59.043 39.130 0.00 0.00 0.00 2.12
4367 4739 9.226606 ACCGCAATATTTATTAAGCAGCTTATA 57.773 29.630 15.81 6.38 0.00 0.98
4368 4740 9.708222 CCGCAATATTTATTAAGCAGCTTATAG 57.292 33.333 15.81 0.00 0.00 1.31
4428 4805 9.394477 CAATGTGATTTATGTAGCAATCATGAG 57.606 33.333 0.09 0.00 40.62 2.90
4437 4814 5.559770 TGTAGCAATCATGAGTTCTTTCCA 58.440 37.500 0.00 0.00 0.00 3.53
4447 4824 6.317140 TCATGAGTTCTTTCCAATGCATCTAC 59.683 38.462 0.00 0.00 0.00 2.59
4497 4874 6.554334 TTACCAAGTCTGACTAACATTTGC 57.446 37.500 11.30 0.00 0.00 3.68
4524 4901 4.692228 CAGCAGGAGGAGAAGAAAGATAC 58.308 47.826 0.00 0.00 0.00 2.24
4576 5214 5.066593 GGGAAGAACTGAAGTCAATGAACT 58.933 41.667 0.00 0.00 0.00 3.01
4651 5292 1.674817 GCTGCTTTTACACTCGGGCTA 60.675 52.381 0.00 0.00 0.00 3.93
4754 5395 1.338200 ACGCTCCTCCATGTTTGTCTC 60.338 52.381 0.00 0.00 0.00 3.36
4758 5399 3.341823 CTCCTCCATGTTTGTCTCAAGG 58.658 50.000 0.00 0.00 0.00 3.61
4765 5406 4.399303 CCATGTTTGTCTCAAGGGATTACC 59.601 45.833 0.00 0.00 40.67 2.85
4808 5453 7.391148 ACACTTTGTCTGTTGAATGTAACTT 57.609 32.000 0.00 0.00 0.00 2.66
4823 5468 5.337219 TGTAACTTAACACATTGACAGCG 57.663 39.130 0.00 0.00 0.00 5.18
4824 5469 2.969443 ACTTAACACATTGACAGCGC 57.031 45.000 0.00 0.00 0.00 5.92
4826 5471 0.515127 TTAACACATTGACAGCGCGG 59.485 50.000 8.83 5.83 0.00 6.46
4875 5520 1.824230 GCATTGTTGTATCTGCCCCAA 59.176 47.619 0.00 0.00 0.00 4.12
4930 5575 2.770164 GAGCATCTACAACCCAGTGT 57.230 50.000 0.00 0.00 35.43 3.55
4931 5576 2.622436 GAGCATCTACAACCCAGTGTC 58.378 52.381 0.00 0.00 32.75 3.67
4932 5577 2.234908 GAGCATCTACAACCCAGTGTCT 59.765 50.000 0.00 0.00 32.75 3.41
4933 5578 2.639839 AGCATCTACAACCCAGTGTCTT 59.360 45.455 0.00 0.00 32.75 3.01
4934 5579 2.744202 GCATCTACAACCCAGTGTCTTG 59.256 50.000 0.00 0.00 32.75 3.02
4935 5580 3.807209 GCATCTACAACCCAGTGTCTTGT 60.807 47.826 7.58 7.58 32.75 3.16
4936 5581 4.562757 GCATCTACAACCCAGTGTCTTGTA 60.563 45.833 8.73 8.73 32.75 2.41
4937 5582 5.734720 CATCTACAACCCAGTGTCTTGTAT 58.265 41.667 9.27 0.00 31.59 2.29
4938 5583 5.147330 TCTACAACCCAGTGTCTTGTATG 57.853 43.478 9.27 5.80 31.59 2.39
4939 5584 3.857157 ACAACCCAGTGTCTTGTATGT 57.143 42.857 1.70 0.00 0.00 2.29
4940 5585 3.740115 ACAACCCAGTGTCTTGTATGTC 58.260 45.455 1.70 0.00 0.00 3.06
4941 5586 3.074412 CAACCCAGTGTCTTGTATGTCC 58.926 50.000 0.00 0.00 0.00 4.02
4942 5587 1.275291 ACCCAGTGTCTTGTATGTCCG 59.725 52.381 0.00 0.00 0.00 4.79
4943 5588 1.275291 CCCAGTGTCTTGTATGTCCGT 59.725 52.381 0.00 0.00 0.00 4.69
4944 5589 2.337583 CCAGTGTCTTGTATGTCCGTG 58.662 52.381 0.00 0.00 0.00 4.94
4945 5590 2.288825 CCAGTGTCTTGTATGTCCGTGT 60.289 50.000 0.00 0.00 0.00 4.49
4946 5591 2.987149 CAGTGTCTTGTATGTCCGTGTC 59.013 50.000 0.00 0.00 0.00 3.67
4947 5592 2.029290 AGTGTCTTGTATGTCCGTGTCC 60.029 50.000 0.00 0.00 0.00 4.02
4948 5593 1.964933 TGTCTTGTATGTCCGTGTCCA 59.035 47.619 0.00 0.00 0.00 4.02
4949 5594 2.365941 TGTCTTGTATGTCCGTGTCCAA 59.634 45.455 0.00 0.00 0.00 3.53
4950 5595 3.007506 TGTCTTGTATGTCCGTGTCCAAT 59.992 43.478 0.00 0.00 0.00 3.16
4951 5596 3.617263 GTCTTGTATGTCCGTGTCCAATC 59.383 47.826 0.00 0.00 0.00 2.67
4952 5597 3.513912 TCTTGTATGTCCGTGTCCAATCT 59.486 43.478 0.00 0.00 0.00 2.40
4953 5598 3.520290 TGTATGTCCGTGTCCAATCTC 57.480 47.619 0.00 0.00 0.00 2.75
4954 5599 3.096852 TGTATGTCCGTGTCCAATCTCT 58.903 45.455 0.00 0.00 0.00 3.10
4955 5600 2.969628 ATGTCCGTGTCCAATCTCTC 57.030 50.000 0.00 0.00 0.00 3.20
4956 5601 0.526211 TGTCCGTGTCCAATCTCTCG 59.474 55.000 0.00 0.00 0.00 4.04
4957 5602 0.526662 GTCCGTGTCCAATCTCTCGT 59.473 55.000 0.00 0.00 0.00 4.18
4958 5603 0.809385 TCCGTGTCCAATCTCTCGTC 59.191 55.000 0.00 0.00 0.00 4.20
4959 5604 0.811915 CCGTGTCCAATCTCTCGTCT 59.188 55.000 0.00 0.00 0.00 4.18
4960 5605 1.468224 CCGTGTCCAATCTCTCGTCTG 60.468 57.143 0.00 0.00 0.00 3.51
4961 5606 1.634702 GTGTCCAATCTCTCGTCTGC 58.365 55.000 0.00 0.00 0.00 4.26
4962 5607 1.067565 GTGTCCAATCTCTCGTCTGCA 60.068 52.381 0.00 0.00 0.00 4.41
4963 5608 1.618343 TGTCCAATCTCTCGTCTGCAA 59.382 47.619 0.00 0.00 0.00 4.08
4964 5609 2.037121 TGTCCAATCTCTCGTCTGCAAA 59.963 45.455 0.00 0.00 0.00 3.68
4965 5610 2.413453 GTCCAATCTCTCGTCTGCAAAC 59.587 50.000 0.00 0.00 0.00 2.93
4996 5641 1.429463 AAATAGCGTGCTATAGCGGC 58.571 50.000 25.03 25.03 45.83 6.53
4997 5642 0.732880 AATAGCGTGCTATAGCGGCG 60.733 55.000 26.73 26.73 44.38 6.46
5020 5665 1.583495 ATAGCGTGCTATAGCGGCGA 61.583 55.000 31.82 26.14 44.38 5.54
5065 5710 5.066375 TCTGGAAACTAAACGCTACGCTATA 59.934 40.000 0.00 0.00 0.00 1.31
5066 5711 5.036737 TGGAAACTAAACGCTACGCTATAC 58.963 41.667 0.00 0.00 0.00 1.47
5084 5729 5.465724 GCTATACGCTATGCAGGTTTAACTT 59.534 40.000 0.00 0.00 35.14 2.66
5101 5746 1.202533 ACTTGCTACGGCGCTATTCAT 60.203 47.619 6.90 0.00 42.25 2.57
5203 5855 3.513912 GCCCACTATACTTTTGGCCTTTT 59.486 43.478 3.32 0.00 32.74 2.27
5260 5912 2.169978 GAGCGAACCCTAACCAACCTAT 59.830 50.000 0.00 0.00 0.00 2.57
5490 6163 0.681733 ATGTCGGTGTCAGCTTCAGT 59.318 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.272490 TCGATCGCTTTCACTTCCAGT 59.728 47.619 11.09 0.00 0.00 4.00
12 13 1.996292 TCGATCGCTTTCACTTCCAG 58.004 50.000 11.09 0.00 0.00 3.86
13 14 2.094234 TCATCGATCGCTTTCACTTCCA 60.094 45.455 11.09 0.00 0.00 3.53
14 15 2.540515 TCATCGATCGCTTTCACTTCC 58.459 47.619 11.09 0.00 0.00 3.46
15 16 3.798878 TCATCATCGATCGCTTTCACTTC 59.201 43.478 11.09 0.00 0.00 3.01
16 17 3.785486 TCATCATCGATCGCTTTCACTT 58.215 40.909 11.09 0.00 0.00 3.16
17 18 3.443099 TCATCATCGATCGCTTTCACT 57.557 42.857 11.09 0.00 0.00 3.41
18 19 3.737774 TCATCATCATCGATCGCTTTCAC 59.262 43.478 11.09 0.00 0.00 3.18
19 20 3.981211 TCATCATCATCGATCGCTTTCA 58.019 40.909 11.09 0.00 0.00 2.69
20 21 4.624452 TCATCATCATCATCGATCGCTTTC 59.376 41.667 11.09 0.00 0.00 2.62
21 22 4.563061 TCATCATCATCATCGATCGCTTT 58.437 39.130 11.09 0.00 0.00 3.51
22 23 4.184079 TCATCATCATCATCGATCGCTT 57.816 40.909 11.09 0.00 0.00 4.68
23 24 3.863142 TCATCATCATCATCGATCGCT 57.137 42.857 11.09 0.00 0.00 4.93
24 25 4.110482 TCATCATCATCATCATCGATCGC 58.890 43.478 11.09 0.00 0.00 4.58
25 26 6.583050 CCTATCATCATCATCATCATCGATCG 59.417 42.308 9.36 9.36 0.00 3.69
26 27 7.659186 TCCTATCATCATCATCATCATCGATC 58.341 38.462 0.00 0.00 0.00 3.69
27 28 7.598759 TCCTATCATCATCATCATCATCGAT 57.401 36.000 0.00 0.00 0.00 3.59
28 29 7.434492 CATCCTATCATCATCATCATCATCGA 58.566 38.462 0.00 0.00 0.00 3.59
29 30 6.146347 GCATCCTATCATCATCATCATCATCG 59.854 42.308 0.00 0.00 0.00 3.84
30 31 6.992715 TGCATCCTATCATCATCATCATCATC 59.007 38.462 0.00 0.00 0.00 2.92
31 32 6.768381 GTGCATCCTATCATCATCATCATCAT 59.232 38.462 0.00 0.00 0.00 2.45
32 33 6.113411 GTGCATCCTATCATCATCATCATCA 58.887 40.000 0.00 0.00 0.00 3.07
33 34 5.234543 CGTGCATCCTATCATCATCATCATC 59.765 44.000 0.00 0.00 0.00 2.92
34 35 5.116882 CGTGCATCCTATCATCATCATCAT 58.883 41.667 0.00 0.00 0.00 2.45
35 36 4.020839 ACGTGCATCCTATCATCATCATCA 60.021 41.667 0.00 0.00 0.00 3.07
36 37 4.502016 ACGTGCATCCTATCATCATCATC 58.498 43.478 0.00 0.00 0.00 2.92
37 38 4.020839 TGACGTGCATCCTATCATCATCAT 60.021 41.667 0.00 0.00 0.00 2.45
38 39 3.321682 TGACGTGCATCCTATCATCATCA 59.678 43.478 0.00 0.00 0.00 3.07
39 40 3.917988 TGACGTGCATCCTATCATCATC 58.082 45.455 0.00 0.00 0.00 2.92
40 41 4.202295 ACTTGACGTGCATCCTATCATCAT 60.202 41.667 0.00 0.00 0.00 2.45
41 42 3.132824 ACTTGACGTGCATCCTATCATCA 59.867 43.478 0.00 0.00 0.00 3.07
42 43 3.492383 CACTTGACGTGCATCCTATCATC 59.508 47.826 0.00 0.00 36.72 2.92
43 44 3.461061 CACTTGACGTGCATCCTATCAT 58.539 45.455 0.00 0.00 36.72 2.45
44 45 2.892374 CACTTGACGTGCATCCTATCA 58.108 47.619 0.00 0.00 36.72 2.15
54 55 2.310233 CGTCTGGGCACTTGACGTG 61.310 63.158 21.06 1.46 43.88 4.49
55 56 2.029073 CGTCTGGGCACTTGACGT 59.971 61.111 21.06 0.00 43.88 4.34
57 58 2.022129 CGACGTCTGGGCACTTGAC 61.022 63.158 14.70 3.16 0.00 3.18
58 59 2.338620 CGACGTCTGGGCACTTGA 59.661 61.111 14.70 0.00 0.00 3.02
59 60 3.414700 GCGACGTCTGGGCACTTG 61.415 66.667 14.70 0.00 0.00 3.16
60 61 4.681978 GGCGACGTCTGGGCACTT 62.682 66.667 14.70 0.00 0.00 3.16
85 86 3.117851 GGCAGAGGACCTAGGCTATTTTT 60.118 47.826 9.30 0.00 0.00 1.94
86 87 2.439880 GGCAGAGGACCTAGGCTATTTT 59.560 50.000 9.30 0.00 0.00 1.82
87 88 2.050918 GGCAGAGGACCTAGGCTATTT 58.949 52.381 9.30 0.00 0.00 1.40
88 89 1.221781 AGGCAGAGGACCTAGGCTATT 59.778 52.381 17.82 0.00 35.10 1.73
89 90 0.863956 AGGCAGAGGACCTAGGCTAT 59.136 55.000 17.82 5.36 35.10 2.97
90 91 0.186386 GAGGCAGAGGACCTAGGCTA 59.814 60.000 18.90 0.00 37.77 3.93
91 92 1.075600 GAGGCAGAGGACCTAGGCT 60.076 63.158 18.94 18.94 37.77 4.58
92 93 2.137528 GGAGGCAGAGGACCTAGGC 61.138 68.421 9.30 10.96 37.77 3.93
93 94 0.758685 CAGGAGGCAGAGGACCTAGG 60.759 65.000 7.41 7.41 37.77 3.02
94 95 1.398958 GCAGGAGGCAGAGGACCTAG 61.399 65.000 0.00 0.00 43.97 3.02
95 96 1.381872 GCAGGAGGCAGAGGACCTA 60.382 63.158 0.00 0.00 43.97 3.08
96 97 2.686835 GCAGGAGGCAGAGGACCT 60.687 66.667 0.00 0.00 43.97 3.85
116 117 1.880340 CGAAGATGAGGCAGACCGC 60.880 63.158 0.00 0.00 42.76 5.68
117 118 1.227089 CCGAAGATGAGGCAGACCG 60.227 63.158 0.00 0.00 42.76 4.79
128 129 1.766461 CCCTAGGGCCACCGAAGAT 60.766 63.158 16.90 0.00 43.47 2.40
153 154 0.400213 GACAGTGATCCACCCAACCA 59.600 55.000 0.00 0.00 34.49 3.67
156 157 1.073763 CAAGGACAGTGATCCACCCAA 59.926 52.381 12.45 0.00 41.73 4.12
157 158 0.692476 CAAGGACAGTGATCCACCCA 59.308 55.000 12.45 0.00 41.73 4.51
158 159 0.678048 GCAAGGACAGTGATCCACCC 60.678 60.000 12.45 0.00 41.73 4.61
167 168 1.270907 CTCCCACTAGCAAGGACAGT 58.729 55.000 0.00 0.00 0.00 3.55
168 169 0.539051 CCTCCCACTAGCAAGGACAG 59.461 60.000 0.00 0.00 0.00 3.51
169 170 0.909610 CCCTCCCACTAGCAAGGACA 60.910 60.000 0.00 0.00 0.00 4.02
171 172 1.995626 GCCCTCCCACTAGCAAGGA 60.996 63.158 0.00 0.00 0.00 3.36
172 173 1.977293 GAGCCCTCCCACTAGCAAGG 61.977 65.000 0.00 0.00 0.00 3.61
173 174 1.524482 GAGCCCTCCCACTAGCAAG 59.476 63.158 0.00 0.00 0.00 4.01
174 175 1.995626 GGAGCCCTCCCACTAGCAA 60.996 63.158 2.81 0.00 43.94 3.91
175 176 2.365635 GGAGCCCTCCCACTAGCA 60.366 66.667 2.81 0.00 43.94 3.49
178 179 0.838987 AAAACGGAGCCCTCCCACTA 60.839 55.000 8.68 0.00 46.96 2.74
179 180 1.716028 AAAAACGGAGCCCTCCCACT 61.716 55.000 8.68 0.00 46.96 4.00
181 182 0.326927 CTAAAAACGGAGCCCTCCCA 59.673 55.000 8.68 0.00 46.96 4.37
211 212 4.773149 TGGACACAAACCCTAACAAAACTT 59.227 37.500 0.00 0.00 0.00 2.66
213 214 4.722361 TGGACACAAACCCTAACAAAAC 57.278 40.909 0.00 0.00 0.00 2.43
215 216 4.601084 TCTTGGACACAAACCCTAACAAA 58.399 39.130 0.00 0.00 35.89 2.83
234 235 0.459237 CGCTGATGTCTCGCCTTCTT 60.459 55.000 0.00 0.00 0.00 2.52
236 237 1.139734 TCGCTGATGTCTCGCCTTC 59.860 57.895 0.00 0.00 0.00 3.46
247 253 3.300388 TCATCTTTAGGGAGTCGCTGAT 58.700 45.455 19.35 10.71 0.00 2.90
248 254 2.735151 TCATCTTTAGGGAGTCGCTGA 58.265 47.619 19.35 8.82 0.00 4.26
250 256 5.871396 TTATTCATCTTTAGGGAGTCGCT 57.129 39.130 14.80 14.80 0.00 4.93
254 260 7.792032 TCGAACATTATTCATCTTTAGGGAGT 58.208 34.615 0.00 0.00 0.00 3.85
261 267 4.273480 CGCCCTCGAACATTATTCATCTTT 59.727 41.667 0.00 0.00 38.10 2.52
268 274 1.603802 CATGCGCCCTCGAACATTATT 59.396 47.619 4.18 0.00 38.10 1.40
270 276 0.813610 CCATGCGCCCTCGAACATTA 60.814 55.000 4.18 0.00 38.10 1.90
271 277 2.114670 CCATGCGCCCTCGAACATT 61.115 57.895 4.18 0.00 38.10 2.71
273 279 4.776322 CCCATGCGCCCTCGAACA 62.776 66.667 4.18 0.00 38.10 3.18
281 287 4.722700 AGACACACCCCATGCGCC 62.723 66.667 4.18 0.00 0.00 6.53
282 288 3.127533 GAGACACACCCCATGCGC 61.128 66.667 0.00 0.00 0.00 6.09
286 292 3.717294 GCCGGAGACACACCCCAT 61.717 66.667 5.05 0.00 0.00 4.00
288 294 4.394712 CTGCCGGAGACACACCCC 62.395 72.222 5.05 0.00 0.00 4.95
310 361 2.885644 CACCGACTGAATCCCGCG 60.886 66.667 0.00 0.00 0.00 6.46
311 362 3.195698 GCACCGACTGAATCCCGC 61.196 66.667 0.00 0.00 0.00 6.13
312 363 1.079127 AAGCACCGACTGAATCCCG 60.079 57.895 0.00 0.00 0.00 5.14
313 364 0.321653 ACAAGCACCGACTGAATCCC 60.322 55.000 0.00 0.00 0.00 3.85
314 365 1.079503 GACAAGCACCGACTGAATCC 58.920 55.000 0.00 0.00 0.00 3.01
315 366 2.086054 AGACAAGCACCGACTGAATC 57.914 50.000 0.00 0.00 0.00 2.52
316 367 2.549754 CAAAGACAAGCACCGACTGAAT 59.450 45.455 0.00 0.00 0.00 2.57
317 368 1.939934 CAAAGACAAGCACCGACTGAA 59.060 47.619 0.00 0.00 0.00 3.02
318 369 1.581934 CAAAGACAAGCACCGACTGA 58.418 50.000 0.00 0.00 0.00 3.41
319 370 0.588252 CCAAAGACAAGCACCGACTG 59.412 55.000 0.00 0.00 0.00 3.51
320 371 0.180406 ACCAAAGACAAGCACCGACT 59.820 50.000 0.00 0.00 0.00 4.18
321 372 0.307760 CACCAAAGACAAGCACCGAC 59.692 55.000 0.00 0.00 0.00 4.79
322 373 0.817634 CCACCAAAGACAAGCACCGA 60.818 55.000 0.00 0.00 0.00 4.69
323 374 0.817634 TCCACCAAAGACAAGCACCG 60.818 55.000 0.00 0.00 0.00 4.94
324 375 1.620822 ATCCACCAAAGACAAGCACC 58.379 50.000 0.00 0.00 0.00 5.01
325 376 3.733443 AAATCCACCAAAGACAAGCAC 57.267 42.857 0.00 0.00 0.00 4.40
326 377 4.469657 AGTAAATCCACCAAAGACAAGCA 58.530 39.130 0.00 0.00 0.00 3.91
327 378 4.378459 CGAGTAAATCCACCAAAGACAAGC 60.378 45.833 0.00 0.00 0.00 4.01
328 379 4.154195 CCGAGTAAATCCACCAAAGACAAG 59.846 45.833 0.00 0.00 0.00 3.16
329 380 4.069304 CCGAGTAAATCCACCAAAGACAA 58.931 43.478 0.00 0.00 0.00 3.18
330 381 3.325425 TCCGAGTAAATCCACCAAAGACA 59.675 43.478 0.00 0.00 0.00 3.41
331 382 3.934068 TCCGAGTAAATCCACCAAAGAC 58.066 45.455 0.00 0.00 0.00 3.01
354 405 3.611986 ACACGAACGTAGACGAACAAAAA 59.388 39.130 9.41 0.00 43.02 1.94
356 407 2.531103 CACACGAACGTAGACGAACAAA 59.469 45.455 9.41 0.00 43.02 2.83
397 452 3.128764 AGATGACAAAGACGCGTAGATCA 59.871 43.478 13.97 12.57 0.00 2.92
406 461 1.421485 GCCGCAGATGACAAAGACG 59.579 57.895 0.00 0.00 0.00 4.18
407 462 1.421485 CGCCGCAGATGACAAAGAC 59.579 57.895 0.00 0.00 0.00 3.01
408 463 1.741401 CCGCCGCAGATGACAAAGA 60.741 57.895 0.00 0.00 0.00 2.52
409 464 1.577328 AACCGCCGCAGATGACAAAG 61.577 55.000 0.00 0.00 0.00 2.77
413 468 4.166011 GCAACCGCCGCAGATGAC 62.166 66.667 0.00 0.00 0.00 3.06
419 474 4.927782 AGAACAGCAACCGCCGCA 62.928 61.111 0.00 0.00 39.83 5.69
459 514 4.065281 GGGAGGTCGTCGTGGTGG 62.065 72.222 0.00 0.00 0.00 4.61
460 515 4.415332 CGGGAGGTCGTCGTGGTG 62.415 72.222 0.00 0.00 0.00 4.17
462 517 4.112341 GTCGGGAGGTCGTCGTGG 62.112 72.222 0.00 0.00 0.00 4.94
472 527 5.125739 ACTTGTTATAGAAGACAGTCGGGAG 59.874 44.000 0.00 0.00 0.00 4.30
485 540 2.750712 GCCGGGCAAAACTTGTTATAGA 59.249 45.455 15.62 0.00 0.00 1.98
489 544 0.955905 GAGCCGGGCAAAACTTGTTA 59.044 50.000 23.09 0.00 0.00 2.41
498 553 3.838271 CTCGCTAGAGCCGGGCAA 61.838 66.667 23.09 5.13 37.73 4.52
509 564 1.528542 CATCGTCCCTCCCTCGCTA 60.529 63.158 0.00 0.00 0.00 4.26
510 565 2.835431 CATCGTCCCTCCCTCGCT 60.835 66.667 0.00 0.00 0.00 4.93
515 570 4.222847 GCCGTCATCGTCCCTCCC 62.223 72.222 0.00 0.00 35.01 4.30
547 602 2.542595 ACGACTAAAAGCACTGAAACGG 59.457 45.455 0.00 0.00 0.00 4.44
550 605 2.220133 GCGACGACTAAAAGCACTGAAA 59.780 45.455 0.00 0.00 0.00 2.69
554 609 2.415625 CCTAGCGACGACTAAAAGCACT 60.416 50.000 0.00 0.00 0.00 4.40
561 616 1.089920 GACCACCTAGCGACGACTAA 58.910 55.000 0.00 0.00 0.00 2.24
614 670 8.512956 CCAATCTATCATCTTCAATCATGGAAC 58.487 37.037 0.00 0.00 0.00 3.62
615 671 8.442374 TCCAATCTATCATCTTCAATCATGGAA 58.558 33.333 0.00 0.00 0.00 3.53
648 711 6.426025 GTGGTCCTATTGTACGACTTCTTTTT 59.574 38.462 0.00 0.00 0.00 1.94
649 712 5.930569 GTGGTCCTATTGTACGACTTCTTTT 59.069 40.000 0.00 0.00 0.00 2.27
650 713 5.245526 AGTGGTCCTATTGTACGACTTCTTT 59.754 40.000 0.00 0.00 31.59 2.52
651 714 4.771054 AGTGGTCCTATTGTACGACTTCTT 59.229 41.667 0.00 0.00 31.59 2.52
652 715 4.158025 CAGTGGTCCTATTGTACGACTTCT 59.842 45.833 0.00 0.00 33.10 2.85
653 716 4.421948 CAGTGGTCCTATTGTACGACTTC 58.578 47.826 0.00 0.00 33.10 3.01
654 717 3.194968 CCAGTGGTCCTATTGTACGACTT 59.805 47.826 0.00 0.00 33.10 3.01
655 718 2.758979 CCAGTGGTCCTATTGTACGACT 59.241 50.000 0.00 0.00 35.38 4.18
656 719 2.756760 TCCAGTGGTCCTATTGTACGAC 59.243 50.000 9.54 0.00 0.00 4.34
657 720 2.756760 GTCCAGTGGTCCTATTGTACGA 59.243 50.000 9.54 0.00 0.00 3.43
658 721 2.758979 AGTCCAGTGGTCCTATTGTACG 59.241 50.000 9.54 0.00 0.00 3.67
659 722 4.341520 CCTAGTCCAGTGGTCCTATTGTAC 59.658 50.000 9.54 0.00 0.00 2.90
660 723 4.543689 CCTAGTCCAGTGGTCCTATTGTA 58.456 47.826 9.54 0.00 0.00 2.41
661 724 3.375699 CCTAGTCCAGTGGTCCTATTGT 58.624 50.000 9.54 0.00 0.00 2.71
662 725 2.700897 CCCTAGTCCAGTGGTCCTATTG 59.299 54.545 9.54 5.48 0.00 1.90
663 726 2.960104 GCCCTAGTCCAGTGGTCCTATT 60.960 54.545 9.54 0.00 0.00 1.73
664 727 1.413227 GCCCTAGTCCAGTGGTCCTAT 60.413 57.143 9.54 0.00 0.00 2.57
665 728 0.032416 GCCCTAGTCCAGTGGTCCTA 60.032 60.000 9.54 9.74 0.00 2.94
666 729 1.306226 GCCCTAGTCCAGTGGTCCT 60.306 63.158 9.54 9.07 0.00 3.85
667 730 1.198759 TTGCCCTAGTCCAGTGGTCC 61.199 60.000 9.54 1.00 0.00 4.46
668 731 0.690762 TTTGCCCTAGTCCAGTGGTC 59.309 55.000 9.54 3.17 0.00 4.02
669 732 1.073923 CTTTTGCCCTAGTCCAGTGGT 59.926 52.381 9.54 0.00 0.00 4.16
670 733 1.073923 ACTTTTGCCCTAGTCCAGTGG 59.926 52.381 1.40 1.40 0.00 4.00
671 734 2.039084 AGACTTTTGCCCTAGTCCAGTG 59.961 50.000 0.00 0.00 41.31 3.66
672 735 2.339769 AGACTTTTGCCCTAGTCCAGT 58.660 47.619 0.00 0.00 41.31 4.00
673 736 3.425162 AAGACTTTTGCCCTAGTCCAG 57.575 47.619 0.00 0.00 41.31 3.86
674 737 3.876309 AAAGACTTTTGCCCTAGTCCA 57.124 42.857 0.00 0.00 41.31 4.02
695 758 3.055312 ACTTTTGCCCGGGTGTTTAAAAA 60.055 39.130 24.63 16.70 0.00 1.94
696 759 2.500504 ACTTTTGCCCGGGTGTTTAAAA 59.499 40.909 24.63 18.72 0.00 1.52
697 760 2.108970 ACTTTTGCCCGGGTGTTTAAA 58.891 42.857 24.63 12.90 0.00 1.52
698 761 1.777941 ACTTTTGCCCGGGTGTTTAA 58.222 45.000 24.63 8.78 0.00 1.52
699 762 1.777941 AACTTTTGCCCGGGTGTTTA 58.222 45.000 24.63 3.20 0.00 2.01
703 766 0.250989 TCCTAACTTTTGCCCGGGTG 60.251 55.000 24.63 10.02 0.00 4.61
710 773 2.740447 CCAGTACCGTCCTAACTTTTGC 59.260 50.000 0.00 0.00 0.00 3.68
711 774 2.740447 GCCAGTACCGTCCTAACTTTTG 59.260 50.000 0.00 0.00 0.00 2.44
712 775 2.369532 TGCCAGTACCGTCCTAACTTTT 59.630 45.455 0.00 0.00 0.00 2.27
718 781 1.340088 TGTTTGCCAGTACCGTCCTA 58.660 50.000 0.00 0.00 0.00 2.94
733 796 3.208594 GGGTGTAGTCTCGGTTTTGTTT 58.791 45.455 0.00 0.00 0.00 2.83
736 799 2.536761 TGGGTGTAGTCTCGGTTTTG 57.463 50.000 0.00 0.00 0.00 2.44
741 804 1.319541 ATCGATGGGTGTAGTCTCGG 58.680 55.000 0.00 0.00 0.00 4.63
742 805 3.438297 AAATCGATGGGTGTAGTCTCG 57.562 47.619 0.00 0.00 0.00 4.04
743 806 5.692204 CACATAAATCGATGGGTGTAGTCTC 59.308 44.000 0.00 0.00 0.00 3.36
744 807 5.362717 TCACATAAATCGATGGGTGTAGTCT 59.637 40.000 0.00 0.00 31.72 3.24
748 811 6.826231 ACAAATCACATAAATCGATGGGTGTA 59.174 34.615 0.00 0.00 31.72 2.90
776 840 0.777446 GCCTTATTCCAGGGCCCATA 59.223 55.000 27.56 10.32 39.96 2.74
784 848 1.005924 ACCTGTTGGGCCTTATTCCAG 59.994 52.381 4.53 0.59 39.10 3.86
805 869 1.602377 GTGGAACCGGACTGTTTTCTG 59.398 52.381 9.46 0.00 0.00 3.02
869 933 2.094338 GGACGTGGATTACTTTCCGAGT 60.094 50.000 0.00 0.00 42.55 4.18
879 943 0.108520 GCCTTCGTGGACGTGGATTA 60.109 55.000 14.67 0.00 40.80 1.75
935 1002 2.558359 GTTGGGGAACAAGTTGATCCAG 59.442 50.000 27.63 0.00 40.67 3.86
943 1010 0.466739 GTTCGGGTTGGGGAACAAGT 60.467 55.000 0.00 0.00 41.60 3.16
1030 1097 3.237741 GGAGGCGATCTGGGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
1096 1163 1.153939 CGTCGACTGCAGAAGGAGG 60.154 63.158 23.35 14.93 37.55 4.30
1097 1164 0.453793 ATCGTCGACTGCAGAAGGAG 59.546 55.000 23.35 8.75 39.41 3.69
1258 1325 2.126307 CACACAGCGAGACGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
1487 1556 1.335689 CCTATACTTCTGCGCCGGTAC 60.336 57.143 4.18 0.00 0.00 3.34
1488 1557 0.956633 CCTATACTTCTGCGCCGGTA 59.043 55.000 4.18 3.05 0.00 4.02
1503 1572 7.201767 GCTTAGACAGTTGCATTGAAATCCTAT 60.202 37.037 5.80 0.00 0.00 2.57
1517 1586 1.618861 CCGACGAGCTTAGACAGTTG 58.381 55.000 0.00 0.00 0.00 3.16
1549 1618 3.517296 TCCAAAAGGCTACACCATTCA 57.483 42.857 0.00 0.00 43.14 2.57
1630 1699 8.837099 ATATCAATTGGAACTACAATTCCCAA 57.163 30.769 5.42 0.00 45.24 4.12
1632 1701 7.505585 TGGATATCAATTGGAACTACAATTCCC 59.494 37.037 5.42 0.00 45.24 3.97
1646 1719 8.332464 GTGCATTGAATTGTTGGATATCAATTG 58.668 33.333 4.83 0.00 42.05 2.32
1857 1932 2.299582 CAGGGCTGAGATATGAGGACAG 59.700 54.545 0.00 0.00 0.00 3.51
1898 1973 4.289672 AGCTTCTTCCCTATTGTCTCCAAA 59.710 41.667 0.00 0.00 33.44 3.28
1982 2057 0.667487 TCAGCGCTTCCAGTTTCTCG 60.667 55.000 7.50 0.00 0.00 4.04
2057 2132 3.726557 AGAACATCAGAAAGGGCATGA 57.273 42.857 0.00 0.00 0.00 3.07
2096 2171 5.544562 ACCTAGAGCCCTAAGGATATGAAAC 59.455 44.000 0.00 0.00 33.47 2.78
2129 2204 2.147958 GCGGTCAACCAAAGTACATCA 58.852 47.619 0.00 0.00 35.14 3.07
2328 2403 1.475403 TAGCTTCTTGCCTAGCTCGT 58.525 50.000 0.00 0.00 44.05 4.18
2355 2430 1.597742 TGTTGTCTTCTGCAGCCTTC 58.402 50.000 9.47 0.32 0.00 3.46
2418 2493 4.944317 GCAGGAGCATTTAAGGTAAGTTCT 59.056 41.667 0.00 0.00 41.58 3.01
2478 2553 4.381932 CCAACTTGGAATTAGGCATTGGAC 60.382 45.833 0.92 0.00 40.96 4.02
2655 2855 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
2656 2856 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2657 2857 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2658 2858 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2659 2859 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2660 2860 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2661 2861 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2662 2862 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2663 2863 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2664 2864 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2665 2865 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2666 2866 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2667 2867 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2668 2868 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2669 2869 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2670 2870 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2671 2871 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2672 2872 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2673 2873 6.156602 TGTTATACTCCCTCCGTTCCAAAATA 59.843 38.462 0.00 0.00 0.00 1.40
2674 2874 5.045432 TGTTATACTCCCTCCGTTCCAAAAT 60.045 40.000 0.00 0.00 0.00 1.82
2675 2875 4.286549 TGTTATACTCCCTCCGTTCCAAAA 59.713 41.667 0.00 0.00 0.00 2.44
2676 2876 3.839490 TGTTATACTCCCTCCGTTCCAAA 59.161 43.478 0.00 0.00 0.00 3.28
2677 2877 3.196254 GTGTTATACTCCCTCCGTTCCAA 59.804 47.826 0.00 0.00 0.00 3.53
2678 2878 2.762327 GTGTTATACTCCCTCCGTTCCA 59.238 50.000 0.00 0.00 0.00 3.53
2679 2879 3.029570 AGTGTTATACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 33.17 3.62
2680 2880 6.214399 CAATAGTGTTATACTCCCTCCGTTC 58.786 44.000 0.00 0.00 40.89 3.95
2681 2881 5.452917 GCAATAGTGTTATACTCCCTCCGTT 60.453 44.000 0.00 0.00 40.89 4.44
2682 2882 4.038883 GCAATAGTGTTATACTCCCTCCGT 59.961 45.833 0.00 0.00 40.89 4.69
2683 2883 4.557205 GCAATAGTGTTATACTCCCTCCG 58.443 47.826 0.00 0.00 40.89 4.63
2684 2884 4.280174 TCGCAATAGTGTTATACTCCCTCC 59.720 45.833 0.00 0.00 40.89 4.30
2685 2885 5.449107 TCGCAATAGTGTTATACTCCCTC 57.551 43.478 0.00 0.00 40.89 4.30
2686 2886 5.864418 TTCGCAATAGTGTTATACTCCCT 57.136 39.130 0.00 0.00 40.89 4.20
2687 2887 6.047231 AGTTTCGCAATAGTGTTATACTCCC 58.953 40.000 0.00 0.00 40.89 4.30
2688 2888 7.535489 AAGTTTCGCAATAGTGTTATACTCC 57.465 36.000 0.00 0.00 40.89 3.85
2689 2889 9.821662 AAAAAGTTTCGCAATAGTGTTATACTC 57.178 29.630 0.00 0.00 40.89 2.59
2690 2890 9.607285 CAAAAAGTTTCGCAATAGTGTTATACT 57.393 29.630 0.00 0.00 43.56 2.12
2707 2907 6.941857 TCTTTTGCTTCCCTACAAAAAGTTT 58.058 32.000 0.00 0.00 43.15 2.66
2716 2916 6.294010 CCAAGTAAACTCTTTTGCTTCCCTAC 60.294 42.308 0.00 0.00 43.45 3.18
2720 2920 5.163550 ACACCAAGTAAACTCTTTTGCTTCC 60.164 40.000 0.00 0.00 43.45 3.46
2730 2930 4.565166 GGCAAACAAACACCAAGTAAACTC 59.435 41.667 0.00 0.00 0.00 3.01
2732 2932 4.246458 TGGCAAACAAACACCAAGTAAAC 58.754 39.130 0.00 0.00 0.00 2.01
2733 2933 4.537135 TGGCAAACAAACACCAAGTAAA 57.463 36.364 0.00 0.00 0.00 2.01
2833 3034 6.651225 AGAACTAGGTAAGAAGTTGCATCAAC 59.349 38.462 1.71 1.71 43.83 3.18
2881 3082 7.278424 GGGCGATTAACAGTTGTAACATAGTTA 59.722 37.037 0.00 1.59 0.00 2.24
2887 3088 3.075884 GGGGCGATTAACAGTTGTAACA 58.924 45.455 0.00 0.00 0.00 2.41
2943 3144 2.373169 TCCATAGATGCCACCCAGATTC 59.627 50.000 0.00 0.00 0.00 2.52
3233 3437 8.826765 AGAGATTGGTAATTTGTCTTCTCCTAA 58.173 33.333 0.00 0.00 30.99 2.69
3265 3469 1.150827 TTGCACAAGCTGATGTCTCG 58.849 50.000 0.00 0.00 42.74 4.04
3301 3545 1.451504 CAGGCAGAGGGTGTTGTCA 59.548 57.895 0.00 0.00 0.00 3.58
3305 3549 0.916358 ATAGCCAGGCAGAGGGTGTT 60.916 55.000 15.80 0.00 37.45 3.32
3342 3587 7.257722 CAACTTTTCAGTACAGTTTGGTTGAT 58.742 34.615 10.85 0.00 34.25 2.57
3343 3588 6.616947 CAACTTTTCAGTACAGTTTGGTTGA 58.383 36.000 10.85 0.00 34.25 3.18
3358 3603 1.065600 GCGCAGGTGCAACTTTTCA 59.934 52.632 0.00 0.00 42.21 2.69
3420 3666 9.392259 ACTGTTAAGGTTAGTTAATGCTAATCC 57.608 33.333 0.00 0.00 33.69 3.01
3476 3722 8.763356 CGAGAATCTCTGAAATTTATCTTCTGG 58.237 37.037 8.77 0.00 0.00 3.86
3479 3725 8.655651 ACCGAGAATCTCTGAAATTTATCTTC 57.344 34.615 8.67 0.00 0.00 2.87
3531 3784 7.121315 AGGAGAAATTCAACCTTAAGTATGTGC 59.879 37.037 0.97 0.00 0.00 4.57
3538 3791 7.164803 AGAGACAGGAGAAATTCAACCTTAAG 58.835 38.462 8.54 0.00 0.00 1.85
3541 3794 5.574970 AGAGACAGGAGAAATTCAACCTT 57.425 39.130 8.54 2.83 0.00 3.50
3543 3796 7.334858 AGATAAGAGACAGGAGAAATTCAACC 58.665 38.462 0.00 0.00 0.00 3.77
3980 4236 6.778559 TCTTAAGGATAGGAGAGAGGTAAAGC 59.221 42.308 1.85 0.00 0.00 3.51
4003 4259 4.797912 AGAAGAACAAAAGGGGAACTCT 57.202 40.909 0.00 0.00 0.00 3.24
4108 4456 7.385205 TCAAAACTCTGATGCTAAGTGTAGAAC 59.615 37.037 0.00 0.00 0.00 3.01
4117 4465 5.489792 AGGACTCAAAACTCTGATGCTAA 57.510 39.130 0.00 0.00 0.00 3.09
4120 4468 5.078411 TCTAGGACTCAAAACTCTGATGC 57.922 43.478 0.00 0.00 0.00 3.91
4126 4479 6.157904 GGTACAACTCTAGGACTCAAAACTC 58.842 44.000 0.00 0.00 0.00 3.01
4137 4490 5.848833 AATAACGAGGGTACAACTCTAGG 57.151 43.478 13.01 3.16 32.83 3.02
4169 4522 7.816031 CCTTTGAGCATACAAAATGAAAGATGT 59.184 33.333 0.00 0.00 38.90 3.06
4340 4712 7.504924 AAGCTGCTTAATAAATATTGCGGTA 57.495 32.000 14.24 0.00 0.00 4.02
4428 4805 6.690194 AGATGTAGATGCATTGGAAAGAAC 57.310 37.500 0.00 0.00 0.00 3.01
4447 4824 9.199982 AGATTGTGCAGAAAACAATAAAAGATG 57.800 29.630 0.00 0.00 45.81 2.90
4524 4901 0.671781 CTTGTCTGGCTTGTCCTCCG 60.672 60.000 0.00 0.00 35.26 4.63
4576 5214 4.083324 CGCCTGCAAGTTGAGAAAATAGAA 60.083 41.667 7.16 0.00 0.00 2.10
4754 5395 4.806640 ATTTGCAACAGGTAATCCCTTG 57.193 40.909 0.00 0.00 42.73 3.61
4758 5399 7.064060 CAAATGAATTTGCAACAGGTAATCC 57.936 36.000 0.00 0.00 40.42 3.01
4808 5453 0.319986 TCCGCGCTGTCAATGTGTTA 60.320 50.000 5.56 0.00 0.00 2.41
4845 5490 5.065218 CAGATACAACAATGCCCTACTTCAC 59.935 44.000 0.00 0.00 0.00 3.18
4875 5520 0.685458 ACGCTACTAACCGGGACCAT 60.685 55.000 6.32 0.00 0.00 3.55
4925 5570 2.987149 GACACGGACATACAAGACACTG 59.013 50.000 0.00 0.00 0.00 3.66
4926 5571 2.029290 GGACACGGACATACAAGACACT 60.029 50.000 0.00 0.00 0.00 3.55
4927 5572 2.288579 TGGACACGGACATACAAGACAC 60.289 50.000 0.00 0.00 0.00 3.67
4928 5573 1.964933 TGGACACGGACATACAAGACA 59.035 47.619 0.00 0.00 0.00 3.41
4929 5574 2.736144 TGGACACGGACATACAAGAC 57.264 50.000 0.00 0.00 0.00 3.01
4930 5575 3.513912 AGATTGGACACGGACATACAAGA 59.486 43.478 0.00 0.00 0.00 3.02
4931 5576 3.861840 AGATTGGACACGGACATACAAG 58.138 45.455 0.00 0.00 0.00 3.16
4932 5577 3.513912 AGAGATTGGACACGGACATACAA 59.486 43.478 0.00 0.00 0.00 2.41
4933 5578 3.096852 AGAGATTGGACACGGACATACA 58.903 45.455 0.00 0.00 0.00 2.29
4934 5579 3.707793 GAGAGATTGGACACGGACATAC 58.292 50.000 0.00 0.00 0.00 2.39
4935 5580 2.357952 CGAGAGATTGGACACGGACATA 59.642 50.000 0.00 0.00 0.00 2.29
4936 5581 1.135139 CGAGAGATTGGACACGGACAT 59.865 52.381 0.00 0.00 0.00 3.06
4937 5582 0.526211 CGAGAGATTGGACACGGACA 59.474 55.000 0.00 0.00 0.00 4.02
4938 5583 0.526662 ACGAGAGATTGGACACGGAC 59.473 55.000 0.00 0.00 0.00 4.79
4939 5584 0.809385 GACGAGAGATTGGACACGGA 59.191 55.000 0.00 0.00 0.00 4.69
4940 5585 0.811915 AGACGAGAGATTGGACACGG 59.188 55.000 0.00 0.00 0.00 4.94
4941 5586 1.901538 CAGACGAGAGATTGGACACG 58.098 55.000 0.00 0.00 0.00 4.49
4942 5587 1.067565 TGCAGACGAGAGATTGGACAC 60.068 52.381 0.00 0.00 0.00 3.67
4943 5588 1.256812 TGCAGACGAGAGATTGGACA 58.743 50.000 0.00 0.00 0.00 4.02
4944 5589 2.370281 TTGCAGACGAGAGATTGGAC 57.630 50.000 0.00 0.00 0.00 4.02
4945 5590 2.612972 GGTTTGCAGACGAGAGATTGGA 60.613 50.000 0.70 0.00 0.00 3.53
4946 5591 1.734465 GGTTTGCAGACGAGAGATTGG 59.266 52.381 0.70 0.00 0.00 3.16
4947 5592 1.734465 GGGTTTGCAGACGAGAGATTG 59.266 52.381 0.70 0.00 0.00 2.67
4948 5593 1.339151 GGGGTTTGCAGACGAGAGATT 60.339 52.381 0.70 0.00 0.00 2.40
4949 5594 0.250513 GGGGTTTGCAGACGAGAGAT 59.749 55.000 0.70 0.00 0.00 2.75
4950 5595 1.118965 TGGGGTTTGCAGACGAGAGA 61.119 55.000 0.70 0.00 0.00 3.10
4951 5596 0.250295 TTGGGGTTTGCAGACGAGAG 60.250 55.000 0.70 0.00 0.00 3.20
4952 5597 0.250295 CTTGGGGTTTGCAGACGAGA 60.250 55.000 0.70 0.00 0.00 4.04
4953 5598 1.237285 CCTTGGGGTTTGCAGACGAG 61.237 60.000 0.70 0.00 0.00 4.18
4954 5599 1.228124 CCTTGGGGTTTGCAGACGA 60.228 57.895 0.70 0.00 0.00 4.20
4955 5600 0.821711 TTCCTTGGGGTTTGCAGACG 60.822 55.000 0.70 0.00 0.00 4.18
4956 5601 1.408969 TTTCCTTGGGGTTTGCAGAC 58.591 50.000 0.00 0.00 0.00 3.51
4957 5602 2.166907 TTTTCCTTGGGGTTTGCAGA 57.833 45.000 0.00 0.00 0.00 4.26
4958 5603 2.998316 TTTTTCCTTGGGGTTTGCAG 57.002 45.000 0.00 0.00 0.00 4.41
4978 5623 0.732880 CGCCGCTATAGCACGCTATT 60.733 55.000 23.99 2.25 42.21 1.73
4979 5624 1.154016 CGCCGCTATAGCACGCTAT 60.154 57.895 23.99 15.45 42.21 2.97
4980 5625 2.254350 CGCCGCTATAGCACGCTA 59.746 61.111 23.99 0.39 42.21 4.26
4983 5628 0.732880 ATTAGCGCCGCTATAGCACG 60.733 55.000 20.79 25.11 41.01 5.34
4984 5629 2.186076 CTATTAGCGCCGCTATAGCAC 58.814 52.381 20.79 14.16 41.01 4.40
4985 5630 1.469251 GCTATTAGCGCCGCTATAGCA 60.469 52.381 32.01 18.30 41.72 3.49
4986 5631 1.201343 GCTATTAGCGCCGCTATAGC 58.799 55.000 27.92 27.92 41.01 2.97
4997 5642 2.186076 CCGCTATAGCACGCTATTAGC 58.814 52.381 23.99 18.38 42.21 3.09
4998 5643 2.186076 GCCGCTATAGCACGCTATTAG 58.814 52.381 23.99 12.09 42.21 1.73
4999 5644 1.466866 CGCCGCTATAGCACGCTATTA 60.467 52.381 23.99 3.22 42.21 0.98
5007 5652 2.540973 CGCTATTATCGCCGCTATAGCA 60.541 50.000 23.99 5.23 43.45 3.49
5020 5665 5.573282 CAGAAACACTATAGCGCGCTATTAT 59.427 40.000 46.76 34.64 39.65 1.28
5065 5710 2.161609 GCAAGTTAAACCTGCATAGCGT 59.838 45.455 0.00 0.00 0.00 5.07
5066 5711 2.420022 AGCAAGTTAAACCTGCATAGCG 59.580 45.455 6.84 0.00 0.00 4.26
5067 5712 4.494199 CGTAGCAAGTTAAACCTGCATAGC 60.494 45.833 6.84 0.00 0.00 2.97
5068 5713 4.034048 CCGTAGCAAGTTAAACCTGCATAG 59.966 45.833 6.84 0.00 0.00 2.23
5069 5714 3.936453 CCGTAGCAAGTTAAACCTGCATA 59.064 43.478 6.84 0.00 0.00 3.14
5070 5715 2.747446 CCGTAGCAAGTTAAACCTGCAT 59.253 45.455 6.84 0.00 0.00 3.96
5071 5716 2.147958 CCGTAGCAAGTTAAACCTGCA 58.852 47.619 6.84 0.00 0.00 4.41
5076 5721 0.794473 AGCGCCGTAGCAAGTTAAAC 59.206 50.000 2.29 0.00 39.83 2.01
5084 5729 1.221466 GCATGAATAGCGCCGTAGCA 61.221 55.000 2.29 0.00 39.83 3.49
5203 5855 4.412199 AGATATGCTTGGTTACTAGGCCAA 59.588 41.667 5.01 12.86 41.90 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.