Multiple sequence alignment - TraesCS4D01G227800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G227800 chr4D 100.000 6019 0 0 852 6870 387086382 387080364 0.000000e+00 11116.0
1 TraesCS4D01G227800 chr4D 100.000 646 0 0 1 646 387087233 387086588 0.000000e+00 1194.0
2 TraesCS4D01G227800 chr4D 95.739 352 12 3 1 352 457071746 457072094 1.290000e-156 564.0
3 TraesCS4D01G227800 chr4B 94.456 3409 112 22 852 4209 475256528 475253146 0.000000e+00 5177.0
4 TraesCS4D01G227800 chr4B 91.976 1321 69 22 4943 6243 475248671 475247368 0.000000e+00 1818.0
5 TraesCS4D01G227800 chr4B 97.079 719 14 3 4234 4946 475253014 475252297 0.000000e+00 1205.0
6 TraesCS4D01G227800 chr4B 93.443 305 7 7 355 646 475256882 475256578 2.270000e-119 440.0
7 TraesCS4D01G227800 chr4B 95.319 235 4 4 6640 6870 475247371 475247140 3.920000e-97 366.0
8 TraesCS4D01G227800 chr4B 82.486 177 19 6 2474 2647 475254671 475254504 2.000000e-30 145.0
9 TraesCS4D01G227800 chr4A 92.285 2035 100 20 4209 6210 68563010 68561000 0.000000e+00 2835.0
10 TraesCS4D01G227800 chr4A 92.620 1626 70 17 852 2451 68566377 68564776 0.000000e+00 2292.0
11 TraesCS4D01G227800 chr4A 92.639 951 43 7 2479 3408 68564684 68563740 0.000000e+00 1343.0
12 TraesCS4D01G227800 chr4A 89.286 812 43 13 6080 6870 68561004 68560216 0.000000e+00 977.0
13 TraesCS4D01G227800 chr4A 92.147 573 29 2 3638 4209 68563688 68563131 0.000000e+00 795.0
14 TraesCS4D01G227800 chr4A 89.841 315 9 8 355 646 68566742 68566428 3.890000e-102 383.0
15 TraesCS4D01G227800 chr4A 91.791 134 11 0 2640 2773 68564742 68564609 3.270000e-43 187.0
16 TraesCS4D01G227800 chr4A 98.113 53 1 0 3542 3594 68563737 68563685 7.340000e-15 93.5
17 TraesCS4D01G227800 chr6D 95.198 354 16 1 1 354 97230976 97231328 6.020000e-155 558.0
18 TraesCS4D01G227800 chr6D 93.838 357 20 2 1 357 10328728 10328374 2.820000e-148 536.0
19 TraesCS4D01G227800 chr6D 85.175 371 44 9 6255 6624 85792252 85791892 3.030000e-98 370.0
20 TraesCS4D01G227800 chr6D 83.420 386 54 10 6246 6626 24216226 24215846 3.940000e-92 350.0
21 TraesCS4D01G227800 chr3D 95.170 352 15 2 1 352 362065358 362065009 7.790000e-154 555.0
22 TraesCS4D01G227800 chr7D 94.857 350 16 2 1 350 565437576 565437229 4.690000e-151 545.0
23 TraesCS4D01G227800 chr5D 94.602 352 18 1 1 352 381806085 381806435 1.690000e-150 544.0
24 TraesCS4D01G227800 chr5D 94.286 350 17 3 1 350 327216717 327216371 3.650000e-147 532.0
25 TraesCS4D01G227800 chr2D 94.286 350 17 2 1 350 7062418 7062764 3.650000e-147 532.0
26 TraesCS4D01G227800 chr2D 81.769 373 48 17 6246 6605 364673487 364673122 1.870000e-75 294.0
27 TraesCS4D01G227800 chr2D 80.556 396 51 18 6246 6626 364832072 364831688 1.460000e-71 281.0
28 TraesCS4D01G227800 chr7B 93.182 352 22 2 1 352 727654973 727655322 3.670000e-142 516.0
29 TraesCS4D01G227800 chr5B 82.687 387 50 12 6245 6625 657397311 657396936 1.850000e-85 327.0
30 TraesCS4D01G227800 chr1D 82.642 386 51 10 6246 6626 431805288 431805662 1.850000e-85 327.0
31 TraesCS4D01G227800 chr2B 82.338 385 48 14 6252 6624 432895730 432895354 4.000000e-82 316.0
32 TraesCS4D01G227800 chr2A 81.330 391 60 9 6246 6626 491458270 491457883 8.660000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G227800 chr4D 387080364 387087233 6869 True 6155.000000 11116 100.000000 1 6870 2 chr4D.!!$R1 6869
1 TraesCS4D01G227800 chr4B 475247140 475256882 9742 True 1525.166667 5177 92.459833 355 6870 6 chr4B.!!$R1 6515
2 TraesCS4D01G227800 chr4A 68560216 68566742 6526 True 1113.187500 2835 92.340250 355 6870 8 chr4A.!!$R1 6515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.040425 CAAAAGTCCGTTTGCTCCCG 60.040 55.000 0.00 0.00 32.10 5.14 F
298 299 0.599558 GCCCGGTTTGTCCCTTTTAC 59.400 55.000 0.00 0.00 0.00 2.01 F
330 331 1.075450 GGACGGACAGGATAGGGGT 60.075 63.158 0.00 0.00 0.00 4.95 F
1799 1833 0.674895 AGTCAGCACGAATTGGCTCC 60.675 55.000 0.00 0.00 38.56 4.70 F
1827 1861 1.139853 GCTCCAAGAGTGATTCCCGAT 59.860 52.381 0.00 0.00 31.39 4.18 F
1966 2012 1.945354 TAAGGACGAGCCGGCTCTTG 61.945 60.000 44.11 34.35 43.43 3.02 F
3716 3872 0.601057 CACCTTTTAGTTTGGGGCCG 59.399 55.000 0.00 0.00 0.00 6.13 F
5253 9185 0.036952 ACAAGCGACCCACAGATCAG 60.037 55.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1498 0.314302 ACTCCACGTCAAGAACCTCG 59.686 55.000 0.87 0.0 0.00 4.63 R
1799 1833 1.071471 ACTCTTGGAGCCACAACGG 59.929 57.895 0.00 0.0 32.04 4.44 R
1879 1913 5.006386 AGCTTCCTCCTTATTGTGAACTTG 58.994 41.667 0.00 0.0 0.00 3.16 R
3498 3639 0.749049 TGCGATCTGAGGATGTCTGG 59.251 55.000 0.00 0.0 31.46 3.86 R
3713 3869 5.212589 AGATTTACAATTTCGTACACGGC 57.787 39.130 1.39 0.0 40.29 5.68 R
3846 4002 1.480137 AGAAGGCAGATCGACAGAAGG 59.520 52.381 0.00 0.0 0.00 3.46 R
5603 9539 1.251251 AGGAGCAAGTGAACCAATGC 58.749 50.000 0.00 0.0 39.06 3.56 R
6345 10422 0.110823 CTTGCGCCACTAACACGAAC 60.111 55.000 4.18 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.140814 GCCAGGCCACCGGAATTC 61.141 66.667 9.46 0.00 0.00 2.17
19 20 2.824041 CCAGGCCACCGGAATTCG 60.824 66.667 9.46 0.00 38.88 3.34
28 29 2.584608 CGGAATTCGGCTGGGAGT 59.415 61.111 0.00 0.00 34.75 3.85
29 30 1.521681 CGGAATTCGGCTGGGAGTC 60.522 63.158 0.00 0.00 34.75 3.36
30 31 1.521681 GGAATTCGGCTGGGAGTCG 60.522 63.158 0.00 0.00 46.14 4.18
31 32 1.521681 GAATTCGGCTGGGAGTCGG 60.522 63.158 0.00 0.00 44.63 4.79
32 33 3.682292 AATTCGGCTGGGAGTCGGC 62.682 63.158 0.00 0.00 44.63 5.54
37 38 3.785859 GCTGGGAGTCGGCCATGA 61.786 66.667 2.24 0.00 41.83 3.07
38 39 2.989639 CTGGGAGTCGGCCATGAA 59.010 61.111 2.24 0.00 0.00 2.57
39 40 1.450312 CTGGGAGTCGGCCATGAAC 60.450 63.158 2.24 0.00 0.00 3.18
40 41 2.511600 GGGAGTCGGCCATGAACG 60.512 66.667 2.24 0.00 0.00 3.95
41 42 2.511600 GGAGTCGGCCATGAACGG 60.512 66.667 2.24 0.00 0.00 4.44
42 43 2.511600 GAGTCGGCCATGAACGGG 60.512 66.667 2.24 0.00 0.00 5.28
43 44 4.096003 AGTCGGCCATGAACGGGG 62.096 66.667 2.24 0.00 0.00 5.73
46 47 4.856801 CGGCCATGAACGGGGGAG 62.857 72.222 2.24 0.00 0.00 4.30
47 48 3.407967 GGCCATGAACGGGGGAGA 61.408 66.667 0.00 0.00 0.00 3.71
48 49 2.190578 GCCATGAACGGGGGAGAG 59.809 66.667 0.00 0.00 0.00 3.20
49 50 2.367202 GCCATGAACGGGGGAGAGA 61.367 63.158 0.00 0.00 0.00 3.10
50 51 1.826024 CCATGAACGGGGGAGAGAG 59.174 63.158 0.00 0.00 0.00 3.20
51 52 1.690219 CCATGAACGGGGGAGAGAGG 61.690 65.000 0.00 0.00 0.00 3.69
52 53 1.383248 ATGAACGGGGGAGAGAGGG 60.383 63.158 0.00 0.00 0.00 4.30
53 54 2.764547 GAACGGGGGAGAGAGGGG 60.765 72.222 0.00 0.00 0.00 4.79
54 55 4.416601 AACGGGGGAGAGAGGGGG 62.417 72.222 0.00 0.00 0.00 5.40
77 78 4.716977 GGAGGGACGTGGGAGGGT 62.717 72.222 0.00 0.00 0.00 4.34
78 79 2.606826 GAGGGACGTGGGAGGGTT 60.607 66.667 0.00 0.00 0.00 4.11
79 80 2.122099 AGGGACGTGGGAGGGTTT 60.122 61.111 0.00 0.00 0.00 3.27
80 81 2.033602 GGGACGTGGGAGGGTTTG 59.966 66.667 0.00 0.00 0.00 2.93
81 82 2.033602 GGACGTGGGAGGGTTTGG 59.966 66.667 0.00 0.00 0.00 3.28
82 83 2.033602 GACGTGGGAGGGTTTGGG 59.966 66.667 0.00 0.00 0.00 4.12
83 84 3.562732 GACGTGGGAGGGTTTGGGG 62.563 68.421 0.00 0.00 0.00 4.96
84 85 3.253838 CGTGGGAGGGTTTGGGGA 61.254 66.667 0.00 0.00 0.00 4.81
85 86 2.836187 CGTGGGAGGGTTTGGGGAA 61.836 63.158 0.00 0.00 0.00 3.97
86 87 1.544703 GTGGGAGGGTTTGGGGAAA 59.455 57.895 0.00 0.00 0.00 3.13
87 88 0.105401 GTGGGAGGGTTTGGGGAAAA 60.105 55.000 0.00 0.00 0.00 2.29
88 89 0.871024 TGGGAGGGTTTGGGGAAAAT 59.129 50.000 0.00 0.00 0.00 1.82
89 90 1.275666 GGGAGGGTTTGGGGAAAATG 58.724 55.000 0.00 0.00 0.00 2.32
90 91 1.275666 GGAGGGTTTGGGGAAAATGG 58.724 55.000 0.00 0.00 0.00 3.16
91 92 0.613260 GAGGGTTTGGGGAAAATGGC 59.387 55.000 0.00 0.00 0.00 4.40
92 93 1.191489 AGGGTTTGGGGAAAATGGCG 61.191 55.000 0.00 0.00 0.00 5.69
93 94 1.375396 GGTTTGGGGAAAATGGCGC 60.375 57.895 0.00 0.00 0.00 6.53
94 95 1.375396 GTTTGGGGAAAATGGCGCC 60.375 57.895 22.73 22.73 38.71 6.53
95 96 1.838846 TTTGGGGAAAATGGCGCCA 60.839 52.632 34.80 34.80 45.28 5.69
96 97 2.203699 TGGGGAAAATGGCGCCAA 60.204 55.556 36.33 17.74 44.19 4.52
97 98 1.838846 TGGGGAAAATGGCGCCAAA 60.839 52.632 36.33 12.16 44.19 3.28
98 99 1.197430 TGGGGAAAATGGCGCCAAAT 61.197 50.000 36.33 23.16 44.19 2.32
99 100 0.744057 GGGGAAAATGGCGCCAAATG 60.744 55.000 36.33 0.00 38.18 2.32
100 101 0.744057 GGGAAAATGGCGCCAAATGG 60.744 55.000 36.33 0.00 38.53 3.16
101 102 0.744057 GGAAAATGGCGCCAAATGGG 60.744 55.000 36.33 0.00 40.85 4.00
125 126 2.754648 GGGGGTTTTGGTTTCTCCC 58.245 57.895 0.00 0.00 37.59 4.30
126 127 0.105401 GGGGGTTTTGGTTTCTCCCA 60.105 55.000 0.00 0.00 39.85 4.37
127 128 1.045407 GGGGTTTTGGTTTCTCCCAC 58.955 55.000 0.00 0.00 39.85 4.61
128 129 1.045407 GGGTTTTGGTTTCTCCCACC 58.955 55.000 0.00 0.00 38.15 4.61
129 130 0.671796 GGTTTTGGTTTCTCCCACCG 59.328 55.000 0.00 0.00 37.07 4.94
130 131 1.682740 GTTTTGGTTTCTCCCACCGA 58.317 50.000 0.00 0.00 37.07 4.69
131 132 1.335810 GTTTTGGTTTCTCCCACCGAC 59.664 52.381 0.00 0.00 37.07 4.79
132 133 0.547075 TTTGGTTTCTCCCACCGACA 59.453 50.000 0.00 0.00 37.07 4.35
133 134 0.107831 TTGGTTTCTCCCACCGACAG 59.892 55.000 0.00 0.00 37.07 3.51
134 135 0.761323 TGGTTTCTCCCACCGACAGA 60.761 55.000 0.00 0.00 37.07 3.41
135 136 0.320508 GGTTTCTCCCACCGACAGAC 60.321 60.000 0.00 0.00 0.00 3.51
136 137 0.666577 GTTTCTCCCACCGACAGACG 60.667 60.000 0.00 0.00 42.18 4.18
153 154 3.732849 GGGCCAGGGGAGGACAAG 61.733 72.222 4.39 0.00 38.98 3.16
154 155 4.432741 GGCCAGGGGAGGACAAGC 62.433 72.222 0.00 0.00 36.38 4.01
155 156 4.785453 GCCAGGGGAGGACAAGCG 62.785 72.222 0.00 0.00 0.00 4.68
156 157 4.785453 CCAGGGGAGGACAAGCGC 62.785 72.222 0.00 0.00 0.00 5.92
191 192 4.719616 GCGCGCTGTCCGTTTCAC 62.720 66.667 26.67 0.00 39.71 3.18
192 193 4.072088 CGCGCTGTCCGTTTCACC 62.072 66.667 5.56 0.00 39.71 4.02
193 194 3.723348 GCGCTGTCCGTTTCACCC 61.723 66.667 0.00 0.00 39.71 4.61
194 195 3.047877 CGCTGTCCGTTTCACCCC 61.048 66.667 0.00 0.00 0.00 4.95
195 196 2.112297 GCTGTCCGTTTCACCCCA 59.888 61.111 0.00 0.00 0.00 4.96
196 197 1.527380 GCTGTCCGTTTCACCCCAA 60.527 57.895 0.00 0.00 0.00 4.12
197 198 1.104577 GCTGTCCGTTTCACCCCAAA 61.105 55.000 0.00 0.00 0.00 3.28
198 199 1.394618 CTGTCCGTTTCACCCCAAAA 58.605 50.000 0.00 0.00 0.00 2.44
199 200 1.066454 CTGTCCGTTTCACCCCAAAAC 59.934 52.381 0.00 0.00 34.09 2.43
200 201 0.386476 GTCCGTTTCACCCCAAAACC 59.614 55.000 0.00 0.00 33.93 3.27
201 202 1.102222 TCCGTTTCACCCCAAAACCG 61.102 55.000 0.00 0.00 33.93 4.44
202 203 1.360911 CGTTTCACCCCAAAACCGG 59.639 57.895 0.00 0.00 33.93 5.28
203 204 1.068417 GTTTCACCCCAAAACCGGC 59.932 57.895 0.00 0.00 31.80 6.13
204 205 2.491022 TTTCACCCCAAAACCGGCG 61.491 57.895 0.00 0.00 0.00 6.46
208 209 3.917760 CCCCAAAACCGGCGCAAA 61.918 61.111 10.83 0.00 0.00 3.68
209 210 2.341911 CCCAAAACCGGCGCAAAT 59.658 55.556 10.83 0.00 0.00 2.32
210 211 1.301322 CCCAAAACCGGCGCAAATT 60.301 52.632 10.83 0.00 0.00 1.82
211 212 0.882484 CCCAAAACCGGCGCAAATTT 60.882 50.000 10.83 2.59 0.00 1.82
212 213 0.234365 CCAAAACCGGCGCAAATTTG 59.766 50.000 14.03 14.03 0.00 2.32
213 214 0.234365 CAAAACCGGCGCAAATTTGG 59.766 50.000 19.47 10.66 0.00 3.28
214 215 0.882484 AAAACCGGCGCAAATTTGGG 60.882 50.000 26.18 26.18 43.22 4.12
220 221 4.449568 CGCAAATTTGGGCCGGGG 62.450 66.667 20.60 0.00 34.31 5.73
221 222 3.000233 GCAAATTTGGGCCGGGGA 61.000 61.111 19.47 0.00 0.00 4.81
222 223 2.366393 GCAAATTTGGGCCGGGGAT 61.366 57.895 19.47 0.00 0.00 3.85
223 224 1.521616 CAAATTTGGGCCGGGGATG 59.478 57.895 10.49 0.00 0.00 3.51
224 225 1.688884 AAATTTGGGCCGGGGATGG 60.689 57.895 2.18 0.00 0.00 3.51
225 226 3.694775 AATTTGGGCCGGGGATGGG 62.695 63.158 2.18 0.00 0.00 4.00
231 232 4.104183 GCCGGGGATGGGTCGAAA 62.104 66.667 2.18 0.00 0.00 3.46
232 233 2.189521 CCGGGGATGGGTCGAAAG 59.810 66.667 0.00 0.00 0.00 2.62
233 234 2.513897 CGGGGATGGGTCGAAAGC 60.514 66.667 0.00 0.00 0.00 3.51
234 235 2.513897 GGGGATGGGTCGAAAGCG 60.514 66.667 0.00 0.00 39.35 4.68
235 236 2.513897 GGGATGGGTCGAAAGCGG 60.514 66.667 0.00 0.00 38.28 5.52
236 237 2.582436 GGATGGGTCGAAAGCGGA 59.418 61.111 0.00 0.00 38.28 5.54
237 238 1.814169 GGATGGGTCGAAAGCGGAC 60.814 63.158 0.00 0.00 38.28 4.79
238 239 1.079405 GATGGGTCGAAAGCGGACA 60.079 57.895 0.00 0.00 38.28 4.02
239 240 1.359459 GATGGGTCGAAAGCGGACAC 61.359 60.000 0.00 0.31 38.28 3.67
240 241 3.110178 GGGTCGAAAGCGGACACG 61.110 66.667 0.00 0.00 44.63 4.49
241 242 2.049802 GGTCGAAAGCGGACACGA 60.050 61.111 0.00 0.00 44.60 4.35
242 243 1.662446 GGTCGAAAGCGGACACGAA 60.662 57.895 0.00 0.00 44.60 3.85
243 244 1.216941 GGTCGAAAGCGGACACGAAA 61.217 55.000 0.00 0.00 44.60 3.46
244 245 0.111398 GTCGAAAGCGGACACGAAAC 60.111 55.000 0.00 0.00 44.60 2.78
245 246 1.154908 CGAAAGCGGACACGAAACG 60.155 57.895 0.00 0.00 44.60 3.60
246 247 1.203313 GAAAGCGGACACGAAACGG 59.797 57.895 0.00 0.00 44.60 4.44
247 248 1.216941 GAAAGCGGACACGAAACGGA 61.217 55.000 0.00 0.00 44.60 4.69
248 249 1.493134 AAAGCGGACACGAAACGGAC 61.493 55.000 0.00 0.00 44.60 4.79
249 250 2.632136 AAGCGGACACGAAACGGACA 62.632 55.000 0.00 0.00 44.60 4.02
250 251 2.239124 GCGGACACGAAACGGACAA 61.239 57.895 0.00 0.00 44.60 3.18
251 252 1.764180 GCGGACACGAAACGGACAAA 61.764 55.000 0.00 0.00 44.60 2.83
252 253 0.651551 CGGACACGAAACGGACAAAA 59.348 50.000 0.00 0.00 44.60 2.44
253 254 1.332552 CGGACACGAAACGGACAAAAG 60.333 52.381 0.00 0.00 44.60 2.27
254 255 1.667212 GGACACGAAACGGACAAAAGT 59.333 47.619 0.00 0.00 0.00 2.66
255 256 2.286008 GGACACGAAACGGACAAAAGTC 60.286 50.000 0.00 0.00 0.00 3.01
256 257 1.667212 ACACGAAACGGACAAAAGTCC 59.333 47.619 4.59 4.59 40.04 3.85
264 265 2.401017 GGACAAAAGTCCGTTTGCTC 57.599 50.000 5.75 3.77 41.33 4.26
265 266 1.001706 GGACAAAAGTCCGTTTGCTCC 60.002 52.381 5.75 7.99 41.33 4.70
266 267 1.001706 GACAAAAGTCCGTTTGCTCCC 60.002 52.381 5.75 0.00 41.33 4.30
267 268 0.040425 CAAAAGTCCGTTTGCTCCCG 60.040 55.000 0.00 0.00 32.10 5.14
268 269 1.792118 AAAAGTCCGTTTGCTCCCGC 61.792 55.000 0.00 0.00 0.00 6.13
294 295 4.653888 CCGCCCGGTTTGTCCCTT 62.654 66.667 0.00 0.00 0.00 3.95
295 296 2.596338 CGCCCGGTTTGTCCCTTT 60.596 61.111 0.00 0.00 0.00 3.11
296 297 2.197605 CGCCCGGTTTGTCCCTTTT 61.198 57.895 0.00 0.00 0.00 2.27
297 298 0.890090 CGCCCGGTTTGTCCCTTTTA 60.890 55.000 0.00 0.00 0.00 1.52
298 299 0.599558 GCCCGGTTTGTCCCTTTTAC 59.400 55.000 0.00 0.00 0.00 2.01
299 300 1.250328 CCCGGTTTGTCCCTTTTACC 58.750 55.000 0.00 0.00 0.00 2.85
300 301 1.250328 CCGGTTTGTCCCTTTTACCC 58.750 55.000 0.00 0.00 0.00 3.69
301 302 1.250328 CGGTTTGTCCCTTTTACCCC 58.750 55.000 0.00 0.00 0.00 4.95
302 303 1.479021 CGGTTTGTCCCTTTTACCCCA 60.479 52.381 0.00 0.00 0.00 4.96
303 304 2.680251 GGTTTGTCCCTTTTACCCCAA 58.320 47.619 0.00 0.00 0.00 4.12
304 305 3.039743 GGTTTGTCCCTTTTACCCCAAA 58.960 45.455 0.00 0.00 0.00 3.28
305 306 3.649023 GGTTTGTCCCTTTTACCCCAAAT 59.351 43.478 0.00 0.00 0.00 2.32
306 307 4.504165 GGTTTGTCCCTTTTACCCCAAATG 60.504 45.833 0.00 0.00 0.00 2.32
307 308 3.905493 TGTCCCTTTTACCCCAAATGA 57.095 42.857 0.00 0.00 0.00 2.57
308 309 4.200447 TGTCCCTTTTACCCCAAATGAA 57.800 40.909 0.00 0.00 0.00 2.57
309 310 3.898741 TGTCCCTTTTACCCCAAATGAAC 59.101 43.478 0.00 0.00 0.00 3.18
310 311 3.057104 GTCCCTTTTACCCCAAATGAACG 60.057 47.826 0.00 0.00 0.00 3.95
311 312 2.232696 CCCTTTTACCCCAAATGAACGG 59.767 50.000 0.00 0.00 0.00 4.44
312 313 2.232696 CCTTTTACCCCAAATGAACGGG 59.767 50.000 0.00 0.00 43.05 5.28
327 328 3.872431 GGGGACGGACAGGATAGG 58.128 66.667 0.00 0.00 0.00 2.57
328 329 1.837499 GGGGACGGACAGGATAGGG 60.837 68.421 0.00 0.00 0.00 3.53
329 330 1.837499 GGGACGGACAGGATAGGGG 60.837 68.421 0.00 0.00 0.00 4.79
330 331 1.075450 GGACGGACAGGATAGGGGT 60.075 63.158 0.00 0.00 0.00 4.95
331 332 1.114119 GGACGGACAGGATAGGGGTC 61.114 65.000 0.00 0.00 0.00 4.46
332 333 1.453762 GACGGACAGGATAGGGGTCG 61.454 65.000 0.00 0.00 32.39 4.79
333 334 2.857744 CGGACAGGATAGGGGTCGC 61.858 68.421 0.00 0.00 32.39 5.19
334 335 2.728817 GACAGGATAGGGGTCGCG 59.271 66.667 0.00 0.00 0.00 5.87
335 336 3.501458 GACAGGATAGGGGTCGCGC 62.501 68.421 0.00 0.00 0.00 6.86
336 337 4.647615 CAGGATAGGGGTCGCGCG 62.648 72.222 26.76 26.76 0.00 6.86
339 340 4.944372 GATAGGGGTCGCGCGGTG 62.944 72.222 31.69 1.17 0.00 4.94
350 351 4.077184 CGCGGTGGAGTTGGCCTA 62.077 66.667 3.32 0.00 0.00 3.93
351 352 2.349755 GCGGTGGAGTTGGCCTAA 59.650 61.111 3.32 0.00 0.00 2.69
352 353 2.038837 GCGGTGGAGTTGGCCTAAC 61.039 63.158 3.32 7.14 39.65 2.34
353 354 1.373435 CGGTGGAGTTGGCCTAACA 59.627 57.895 16.93 2.83 41.88 2.41
513 523 1.810030 GTAGCCGGACGCAAGGAAG 60.810 63.158 5.05 0.00 46.39 3.46
1169 1197 3.855853 GGCGGAAGAGGAGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
1501 1532 2.028567 GTGGAGTTGGAGGAAGAGACAG 60.029 54.545 0.00 0.00 0.00 3.51
1510 1544 1.744741 GAAGAGACAGCCCAGCAGC 60.745 63.158 0.00 0.00 0.00 5.25
1529 1563 1.147824 ATGATCTGGGCGCTGAAGG 59.852 57.895 14.18 0.00 0.00 3.46
1747 1781 2.984471 GCAGATGTTCTTGACGTCGTAA 59.016 45.455 11.62 1.92 46.73 3.18
1748 1782 3.612860 GCAGATGTTCTTGACGTCGTAAT 59.387 43.478 11.62 0.00 46.73 1.89
1799 1833 0.674895 AGTCAGCACGAATTGGCTCC 60.675 55.000 0.00 0.00 38.56 4.70
1827 1861 1.139853 GCTCCAAGAGTGATTCCCGAT 59.860 52.381 0.00 0.00 31.39 4.18
1879 1913 5.757850 ACAATCTGTGGAAGAAGTTGTTC 57.242 39.130 4.18 4.18 35.50 3.18
1966 2012 1.945354 TAAGGACGAGCCGGCTCTTG 61.945 60.000 44.11 34.35 43.43 3.02
2310 2356 4.378459 CCTTCTTCTCGTGCAAAATGGTAC 60.378 45.833 0.00 0.00 0.00 3.34
2317 2363 2.717011 CGTGCAAAATGGTACGTGTTTC 59.283 45.455 0.00 0.00 41.12 2.78
2322 2368 5.470437 TGCAAAATGGTACGTGTTTCATCTA 59.530 36.000 0.00 0.00 0.00 1.98
2358 2406 8.873215 TCGTTCCACTTATCTTTCTTATGATC 57.127 34.615 0.00 0.00 0.00 2.92
2566 2696 8.157476 TCTTCTAATGGGGACTATGATAAAAGC 58.843 37.037 0.00 0.00 0.00 3.51
2740 2870 6.988622 ACACCATAATGGCAATCAAATTTG 57.011 33.333 12.15 12.15 42.67 2.32
2790 2920 3.260632 GGGGAAACATGGTGCACTTAAAT 59.739 43.478 17.98 3.00 0.00 1.40
2798 2928 6.913170 ACATGGTGCACTTAAATCAAGTAAG 58.087 36.000 17.98 0.00 46.04 2.34
2925 3057 6.957631 ACTATACATGAACAGATGAACCCAA 58.042 36.000 0.00 0.00 0.00 4.12
2936 3069 9.956720 GAACAGATGAACCCAATATTATTTGAG 57.043 33.333 0.00 0.00 0.00 3.02
2944 3077 5.760253 ACCCAATATTATTTGAGAGAGTGCG 59.240 40.000 0.00 0.00 0.00 5.34
2985 3120 4.449068 AGCAGACGAAACACTTTCTGTATG 59.551 41.667 0.00 8.58 38.21 2.39
2986 3121 4.211374 GCAGACGAAACACTTTCTGTATGT 59.789 41.667 0.00 0.00 37.53 2.29
2987 3122 5.670097 CAGACGAAACACTTTCTGTATGTG 58.330 41.667 0.00 0.00 37.52 3.21
3203 3344 4.014569 TGCAGCTAGGTTGACATTGTTA 57.985 40.909 0.00 0.00 0.00 2.41
3243 3384 8.649810 AATTGCTAAAACTTTAACATCGTACG 57.350 30.769 9.53 9.53 0.00 3.67
3392 3533 5.728741 ACCCATCTATCTTCTTCACCTTTCT 59.271 40.000 0.00 0.00 0.00 2.52
3463 3604 8.169977 ACAATTGAAATCATAGTGTTCTGTGT 57.830 30.769 13.59 0.00 34.96 3.72
3601 3756 2.092212 CCACTGGAGATACCCATTGCTT 60.092 50.000 0.00 0.00 36.06 3.91
3713 3869 5.873146 TTTTACCACCTTTTAGTTTGGGG 57.127 39.130 0.00 0.00 33.00 4.96
3716 3872 0.601057 CACCTTTTAGTTTGGGGCCG 59.399 55.000 0.00 0.00 0.00 6.13
3769 3925 3.594532 ACAAGTACTGTTGGGCTTTGCC 61.595 50.000 0.00 0.00 41.42 4.52
3807 3963 1.686052 GTTGGTCTGGTGCAATTTCCA 59.314 47.619 0.00 0.00 0.00 3.53
3830 3986 6.863126 CCACTGTAAACTGAATTGACAATTCC 59.137 38.462 29.34 17.48 45.23 3.01
3929 4085 1.528586 CACTGAACAACCTCTCTTGCG 59.471 52.381 0.00 0.00 0.00 4.85
3937 4093 1.230324 ACCTCTCTTGCGCAAGTTTC 58.770 50.000 40.37 0.00 39.38 2.78
4046 4202 9.499479 GTCATATCTTCAGAATGGTGTCATAAT 57.501 33.333 0.00 0.00 36.16 1.28
4081 4237 5.994668 TGTCCGCAAACATGCATATCTTATA 59.005 36.000 0.00 0.00 34.41 0.98
4209 4365 5.366186 ACTGCCTGAGATCATAAGTTCTGAT 59.634 40.000 3.55 3.55 36.07 2.90
4619 4901 8.892723 TGGAGTTGTACTTGCAATAATTATGAG 58.107 33.333 0.00 0.00 0.00 2.90
4636 4918 8.737168 AATTATGAGTGTGCTACATACATGTT 57.263 30.769 2.30 0.00 41.97 2.71
4732 5014 1.134753 ACGCACACGATATCCGGTAAA 59.865 47.619 0.00 0.00 43.93 2.01
4921 5204 6.901300 TCTGTATTCTTAGGGGTTCTGTGTAT 59.099 38.462 0.00 0.00 0.00 2.29
5077 8989 0.683412 GAGACACAACCCCGGTAAGT 59.317 55.000 0.00 0.00 0.00 2.24
5116 9028 7.781548 AATGTATAACTTAGGTTTACCGCAG 57.218 36.000 0.00 0.00 42.08 5.18
5117 9029 5.111293 TGTATAACTTAGGTTTACCGCAGC 58.889 41.667 0.00 0.00 42.08 5.25
5153 9085 6.128090 TGCTTGAGAACAGAGCTAATGATTTG 60.128 38.462 5.45 0.00 37.32 2.32
5213 9145 0.322456 TGTTGATTCTGAAGGGGCCG 60.322 55.000 0.00 0.00 0.00 6.13
5253 9185 0.036952 ACAAGCGACCCACAGATCAG 60.037 55.000 0.00 0.00 0.00 2.90
5345 9277 4.592485 TCGGTGTTGTATTTGCCATTTT 57.408 36.364 0.00 0.00 0.00 1.82
5383 9316 4.873827 GTGCTGGTACAAGAATATTTCGGA 59.126 41.667 0.00 0.00 38.70 4.55
5435 9371 5.951747 AGTTTCCAATGGCAGTATGTACAAT 59.048 36.000 0.00 0.00 39.31 2.71
5498 9434 0.253044 TATGACCCTGACTTGCTGGC 59.747 55.000 0.00 0.00 34.47 4.85
5610 9546 6.876155 TGCTTCACATATATTTTGCATTGGT 58.124 32.000 0.00 0.00 0.00 3.67
5612 9548 7.492020 TGCTTCACATATATTTTGCATTGGTTC 59.508 33.333 0.00 0.00 0.00 3.62
5616 9552 8.530311 TCACATATATTTTGCATTGGTTCACTT 58.470 29.630 0.00 0.00 0.00 3.16
5617 9553 8.597227 CACATATATTTTGCATTGGTTCACTTG 58.403 33.333 0.00 0.00 0.00 3.16
5643 9579 7.040132 GCTCCTAGGAAATAAAATAAGCTGCAT 60.040 37.037 13.77 0.00 0.00 3.96
5644 9580 8.766994 TCCTAGGAAATAAAATAAGCTGCATT 57.233 30.769 9.71 0.00 0.00 3.56
5645 9581 9.200817 TCCTAGGAAATAAAATAAGCTGCATTT 57.799 29.630 9.71 0.00 0.00 2.32
5646 9582 9.822185 CCTAGGAAATAAAATAAGCTGCATTTT 57.178 29.630 18.25 18.25 38.69 1.82
5649 9585 9.506018 AGGAAATAAAATAAGCTGCATTTTGTT 57.494 25.926 21.23 18.80 37.92 2.83
5650 9586 9.759259 GGAAATAAAATAAGCTGCATTTTGTTC 57.241 29.630 21.23 20.87 36.37 3.18
5651 9587 9.464248 GAAATAAAATAAGCTGCATTTTGTTCG 57.536 29.630 21.23 0.00 36.37 3.95
5652 9588 8.755696 AATAAAATAAGCTGCATTTTGTTCGA 57.244 26.923 21.23 8.28 33.88 3.71
5653 9589 8.755696 ATAAAATAAGCTGCATTTTGTTCGAA 57.244 26.923 21.23 0.00 36.51 3.71
5657 9593 4.241590 AGCTGCATTTTGTTCGAATGAA 57.758 36.364 0.00 0.00 36.78 2.57
5694 9630 6.811665 TGACAGCTGTTTGTAGTGATATGTAC 59.188 38.462 22.65 1.92 0.00 2.90
5695 9631 6.936279 ACAGCTGTTTGTAGTGATATGTACT 58.064 36.000 15.25 0.00 0.00 2.73
5696 9632 6.813649 ACAGCTGTTTGTAGTGATATGTACTG 59.186 38.462 15.25 0.00 0.00 2.74
5723 9659 9.558396 TTTCTGGCTGTTGATTTTAAATTCATT 57.442 25.926 12.29 0.00 0.00 2.57
5724 9660 8.537049 TCTGGCTGTTGATTTTAAATTCATTG 57.463 30.769 12.29 7.82 0.00 2.82
5743 9680 3.226682 TGTAACCCTAACCAACCCAAC 57.773 47.619 0.00 0.00 0.00 3.77
5746 9683 4.414846 TGTAACCCTAACCAACCCAACTAA 59.585 41.667 0.00 0.00 0.00 2.24
5763 9700 6.492087 CCCAACTAACTGAATTTGGACCTTTA 59.508 38.462 0.67 0.00 40.97 1.85
5764 9701 7.309194 CCCAACTAACTGAATTTGGACCTTTAG 60.309 40.741 0.67 0.00 40.97 1.85
5768 9705 8.847196 ACTAACTGAATTTGGACCTTTAGTTTC 58.153 33.333 7.24 0.00 34.34 2.78
5769 9706 7.898014 AACTGAATTTGGACCTTTAGTTTCT 57.102 32.000 0.00 0.00 29.86 2.52
5780 9717 8.215050 TGGACCTTTAGTTTCTCAATCAGTTTA 58.785 33.333 0.00 0.00 0.00 2.01
5781 9718 8.504815 GGACCTTTAGTTTCTCAATCAGTTTAC 58.495 37.037 0.00 0.00 0.00 2.01
5792 9729 6.990349 TCTCAATCAGTTTACTTTTCCGTCTT 59.010 34.615 0.00 0.00 0.00 3.01
5793 9730 6.954944 TCAATCAGTTTACTTTTCCGTCTTG 58.045 36.000 0.00 0.00 0.00 3.02
5794 9731 4.806342 TCAGTTTACTTTTCCGTCTTGC 57.194 40.909 0.00 0.00 0.00 4.01
5799 9736 1.594331 ACTTTTCCGTCTTGCCACTC 58.406 50.000 0.00 0.00 0.00 3.51
5800 9737 1.134220 ACTTTTCCGTCTTGCCACTCA 60.134 47.619 0.00 0.00 0.00 3.41
5805 9742 2.695359 TCCGTCTTGCCACTCAATTAC 58.305 47.619 0.00 0.00 33.57 1.89
5818 9755 7.753132 TGCCACTCAATTACGTTTTATCAATTC 59.247 33.333 0.00 0.00 0.00 2.17
5823 9760 9.199184 CTCAATTACGTTTTATCAATTCAGTCG 57.801 33.333 0.00 0.00 0.00 4.18
5848 9785 4.082125 CCTGTAAATTTTCAGGGCAGAGT 58.918 43.478 27.66 0.00 45.11 3.24
5863 9800 0.540830 AGAGTTCTGACGTCCCTGCT 60.541 55.000 14.12 6.31 0.00 4.24
5927 9867 3.403277 GCGCATTGCTGAGATCGT 58.597 55.556 0.30 0.00 41.73 3.73
5966 9906 7.011482 CCTCATAAGATTAGGTTTGTACAGTGC 59.989 40.741 0.00 0.00 0.00 4.40
5979 9919 0.964860 ACAGTGCTTGTGGTTGTGCA 60.965 50.000 0.00 0.00 38.99 4.57
6173 10114 5.358298 ACGAGAAATTAAGTGGTTGAAGC 57.642 39.130 0.00 0.00 0.00 3.86
6250 10327 6.016777 GCTTTTCTCCATGACTTTCAGAGAAA 60.017 38.462 13.64 13.64 41.64 2.52
6260 10337 3.066760 ACTTTCAGAGAAAGGCGTTTTGG 59.933 43.478 19.97 0.00 0.00 3.28
6261 10338 0.951558 TCAGAGAAAGGCGTTTTGGC 59.048 50.000 5.76 0.00 45.27 4.52
6268 10345 4.050934 GGCGTTTTGGCTTCCGGG 62.051 66.667 0.00 0.00 40.72 5.73
6269 10346 2.981350 GCGTTTTGGCTTCCGGGA 60.981 61.111 0.00 0.00 0.00 5.14
6270 10347 2.978018 GCGTTTTGGCTTCCGGGAG 61.978 63.158 4.95 4.95 0.00 4.30
6271 10348 2.962569 GTTTTGGCTTCCGGGAGC 59.037 61.111 27.88 27.88 41.96 4.70
6272 10349 2.671619 TTTTGGCTTCCGGGAGCG 60.672 61.111 28.46 0.00 43.62 5.03
6358 10435 7.821595 TGTTTATAGATGTTCGTGTTAGTGG 57.178 36.000 0.00 0.00 0.00 4.00
6404 10481 0.591170 CGAAACGGAGCAATGGTGTT 59.409 50.000 0.00 0.00 0.00 3.32
6414 10491 2.070783 GCAATGGTGTTTTGCTGATGG 58.929 47.619 1.36 0.00 44.71 3.51
6458 10535 4.408182 TTTTGGGGTAACATTTGGTGTG 57.592 40.909 0.00 0.00 41.14 3.82
6487 10567 3.383620 TGCACAGGCCAAAATGTTTAG 57.616 42.857 5.01 0.00 40.13 1.85
6518 10598 9.964303 TTTGCCTATAAATTTGTATGTAGCATG 57.036 29.630 0.00 0.00 0.00 4.06
6534 10614 4.494350 AGCATGTGAATGTGACAAAGAC 57.506 40.909 0.00 0.00 0.00 3.01
6541 10621 5.295787 TGTGAATGTGACAAAGACAACCTAC 59.704 40.000 0.00 0.00 0.00 3.18
6617 10700 2.746277 GCTCCGGCGAACACCAAT 60.746 61.111 9.30 0.00 0.00 3.16
6621 10704 2.398554 CCGGCGAACACCAATGGAG 61.399 63.158 9.30 0.00 0.00 3.86
6646 10729 4.827284 TCCAATGACTTTCACCCTTTCTTC 59.173 41.667 0.00 0.00 0.00 2.87
6689 10774 6.043243 ACTTTCACCCTATCTTCTTCAGTTGA 59.957 38.462 0.00 0.00 0.00 3.18
6852 10952 1.059942 GTTGGATTTTTGCGCCTTCG 58.940 50.000 4.18 0.00 39.07 3.79
6853 10953 0.671251 TTGGATTTTTGCGCCTTCGT 59.329 45.000 4.18 0.00 38.14 3.85
6854 10954 0.239879 TGGATTTTTGCGCCTTCGTC 59.760 50.000 4.18 0.00 38.14 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.140814 GAATTCCGGTGGCCTGGC 61.141 66.667 11.05 11.05 0.00 4.85
2 3 2.824041 CGAATTCCGGTGGCCTGG 60.824 66.667 3.32 3.21 33.91 4.45
11 12 1.521681 GACTCCCAGCCGAATTCCG 60.522 63.158 0.00 0.00 38.18 4.30
12 13 1.521681 CGACTCCCAGCCGAATTCC 60.522 63.158 0.00 0.00 0.00 3.01
13 14 1.521681 CCGACTCCCAGCCGAATTC 60.522 63.158 0.00 0.00 0.00 2.17
14 15 2.584608 CCGACTCCCAGCCGAATT 59.415 61.111 0.00 0.00 0.00 2.17
15 16 4.162690 GCCGACTCCCAGCCGAAT 62.163 66.667 0.00 0.00 0.00 3.34
20 21 3.329542 TTCATGGCCGACTCCCAGC 62.330 63.158 0.00 0.00 35.48 4.85
21 22 1.450312 GTTCATGGCCGACTCCCAG 60.450 63.158 0.00 0.00 35.48 4.45
22 23 2.668632 GTTCATGGCCGACTCCCA 59.331 61.111 0.00 0.00 36.66 4.37
23 24 2.511600 CGTTCATGGCCGACTCCC 60.512 66.667 0.00 0.00 0.00 4.30
24 25 2.511600 CCGTTCATGGCCGACTCC 60.512 66.667 0.00 0.00 0.00 3.85
25 26 2.511600 CCCGTTCATGGCCGACTC 60.512 66.667 0.00 0.00 0.00 3.36
26 27 4.096003 CCCCGTTCATGGCCGACT 62.096 66.667 0.00 0.00 0.00 4.18
29 30 4.856801 CTCCCCCGTTCATGGCCG 62.857 72.222 0.00 0.00 0.00 6.13
30 31 3.406595 CTCTCCCCCGTTCATGGCC 62.407 68.421 0.00 0.00 0.00 5.36
31 32 2.190578 CTCTCCCCCGTTCATGGC 59.809 66.667 0.00 0.00 0.00 4.40
32 33 1.690219 CCTCTCTCCCCCGTTCATGG 61.690 65.000 0.00 0.00 0.00 3.66
33 34 1.690219 CCCTCTCTCCCCCGTTCATG 61.690 65.000 0.00 0.00 0.00 3.07
34 35 1.383248 CCCTCTCTCCCCCGTTCAT 60.383 63.158 0.00 0.00 0.00 2.57
35 36 2.038975 CCCTCTCTCCCCCGTTCA 59.961 66.667 0.00 0.00 0.00 3.18
36 37 2.764547 CCCCTCTCTCCCCCGTTC 60.765 72.222 0.00 0.00 0.00 3.95
37 38 4.416601 CCCCCTCTCTCCCCCGTT 62.417 72.222 0.00 0.00 0.00 4.44
60 61 4.716977 ACCCTCCCACGTCCCTCC 62.717 72.222 0.00 0.00 0.00 4.30
61 62 2.222013 AAACCCTCCCACGTCCCTC 61.222 63.158 0.00 0.00 0.00 4.30
62 63 2.122099 AAACCCTCCCACGTCCCT 60.122 61.111 0.00 0.00 0.00 4.20
63 64 2.033602 CAAACCCTCCCACGTCCC 59.966 66.667 0.00 0.00 0.00 4.46
64 65 2.033602 CCAAACCCTCCCACGTCC 59.966 66.667 0.00 0.00 0.00 4.79
65 66 2.033602 CCCAAACCCTCCCACGTC 59.966 66.667 0.00 0.00 0.00 4.34
66 67 3.576259 CCCCAAACCCTCCCACGT 61.576 66.667 0.00 0.00 0.00 4.49
67 68 2.360439 TTTCCCCAAACCCTCCCACG 62.360 60.000 0.00 0.00 0.00 4.94
68 69 0.105401 TTTTCCCCAAACCCTCCCAC 60.105 55.000 0.00 0.00 0.00 4.61
69 70 0.871024 ATTTTCCCCAAACCCTCCCA 59.129 50.000 0.00 0.00 0.00 4.37
70 71 1.275666 CATTTTCCCCAAACCCTCCC 58.724 55.000 0.00 0.00 0.00 4.30
71 72 1.275666 CCATTTTCCCCAAACCCTCC 58.724 55.000 0.00 0.00 0.00 4.30
72 73 0.613260 GCCATTTTCCCCAAACCCTC 59.387 55.000 0.00 0.00 0.00 4.30
73 74 1.191489 CGCCATTTTCCCCAAACCCT 61.191 55.000 0.00 0.00 0.00 4.34
74 75 1.295101 CGCCATTTTCCCCAAACCC 59.705 57.895 0.00 0.00 0.00 4.11
75 76 1.375396 GCGCCATTTTCCCCAAACC 60.375 57.895 0.00 0.00 0.00 3.27
76 77 1.375396 GGCGCCATTTTCCCCAAAC 60.375 57.895 24.80 0.00 0.00 2.93
77 78 1.410850 TTGGCGCCATTTTCCCCAAA 61.411 50.000 33.25 8.24 32.99 3.28
78 79 1.410850 TTTGGCGCCATTTTCCCCAA 61.411 50.000 33.25 16.45 34.02 4.12
79 80 1.197430 ATTTGGCGCCATTTTCCCCA 61.197 50.000 33.25 10.05 0.00 4.96
80 81 0.744057 CATTTGGCGCCATTTTCCCC 60.744 55.000 33.25 0.00 0.00 4.81
81 82 0.744057 CCATTTGGCGCCATTTTCCC 60.744 55.000 33.25 0.00 0.00 3.97
82 83 0.744057 CCCATTTGGCGCCATTTTCC 60.744 55.000 33.25 0.00 0.00 3.13
83 84 0.744057 CCCCATTTGGCGCCATTTTC 60.744 55.000 33.25 0.00 0.00 2.29
84 85 1.299321 CCCCATTTGGCGCCATTTT 59.701 52.632 33.25 15.52 0.00 1.82
85 86 2.988800 CCCCATTTGGCGCCATTT 59.011 55.556 33.25 18.40 0.00 2.32
86 87 3.784719 GCCCCATTTGGCGCCATT 61.785 61.111 33.25 18.82 42.54 3.16
107 108 0.105401 TGGGAGAAACCAAAACCCCC 60.105 55.000 0.00 0.00 39.78 5.40
108 109 1.045407 GTGGGAGAAACCAAAACCCC 58.955 55.000 0.00 0.00 43.34 4.95
109 110 1.045407 GGTGGGAGAAACCAAAACCC 58.955 55.000 0.00 0.00 43.34 4.11
110 111 0.671796 CGGTGGGAGAAACCAAAACC 59.328 55.000 0.00 0.00 43.34 3.27
111 112 1.335810 GTCGGTGGGAGAAACCAAAAC 59.664 52.381 0.00 0.00 43.34 2.43
112 113 1.064611 TGTCGGTGGGAGAAACCAAAA 60.065 47.619 0.00 0.00 43.34 2.44
113 114 0.547075 TGTCGGTGGGAGAAACCAAA 59.453 50.000 0.00 0.00 43.34 3.28
114 115 0.107831 CTGTCGGTGGGAGAAACCAA 59.892 55.000 0.00 0.00 43.34 3.67
115 116 0.761323 TCTGTCGGTGGGAGAAACCA 60.761 55.000 0.00 0.00 41.20 3.67
116 117 0.320508 GTCTGTCGGTGGGAGAAACC 60.321 60.000 0.00 0.00 38.08 3.27
117 118 0.666577 CGTCTGTCGGTGGGAGAAAC 60.667 60.000 0.00 0.00 35.71 2.78
118 119 1.663739 CGTCTGTCGGTGGGAGAAA 59.336 57.895 0.00 0.00 35.71 2.52
119 120 3.362262 CGTCTGTCGGTGGGAGAA 58.638 61.111 0.00 0.00 35.71 2.87
136 137 3.732849 CTTGTCCTCCCCTGGCCC 61.733 72.222 0.00 0.00 0.00 5.80
137 138 4.432741 GCTTGTCCTCCCCTGGCC 62.433 72.222 0.00 0.00 0.00 5.36
138 139 4.785453 CGCTTGTCCTCCCCTGGC 62.785 72.222 0.00 0.00 0.00 4.85
139 140 4.785453 GCGCTTGTCCTCCCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
174 175 4.719616 GTGAAACGGACAGCGCGC 62.720 66.667 26.66 26.66 0.00 6.86
175 176 4.072088 GGTGAAACGGACAGCGCG 62.072 66.667 0.00 0.00 38.12 6.86
176 177 3.723348 GGGTGAAACGGACAGCGC 61.723 66.667 0.00 0.00 38.12 5.92
177 178 3.047877 GGGGTGAAACGGACAGCG 61.048 66.667 0.00 0.00 38.12 5.18
178 179 1.104577 TTTGGGGTGAAACGGACAGC 61.105 55.000 0.00 0.00 38.12 4.40
179 180 1.066454 GTTTTGGGGTGAAACGGACAG 59.934 52.381 0.00 0.00 38.12 3.51
180 181 1.104630 GTTTTGGGGTGAAACGGACA 58.895 50.000 0.00 0.00 38.12 4.02
181 182 0.386476 GGTTTTGGGGTGAAACGGAC 59.614 55.000 0.00 0.00 37.76 4.79
182 183 1.102222 CGGTTTTGGGGTGAAACGGA 61.102 55.000 0.00 0.00 38.71 4.69
183 184 1.360911 CGGTTTTGGGGTGAAACGG 59.639 57.895 0.00 0.00 37.76 4.44
184 185 1.360911 CCGGTTTTGGGGTGAAACG 59.639 57.895 0.00 0.00 37.76 3.60
185 186 1.068417 GCCGGTTTTGGGGTGAAAC 59.932 57.895 1.90 0.00 36.51 2.78
186 187 2.491022 CGCCGGTTTTGGGGTGAAA 61.491 57.895 1.90 0.00 37.20 2.69
187 188 2.907917 CGCCGGTTTTGGGGTGAA 60.908 61.111 1.90 0.00 37.20 3.18
191 192 2.723586 AATTTGCGCCGGTTTTGGGG 62.724 55.000 4.18 0.00 44.36 4.96
192 193 0.882484 AAATTTGCGCCGGTTTTGGG 60.882 50.000 4.18 0.00 0.00 4.12
193 194 0.234365 CAAATTTGCGCCGGTTTTGG 59.766 50.000 4.18 0.00 0.00 3.28
194 195 0.234365 CCAAATTTGCGCCGGTTTTG 59.766 50.000 12.92 9.84 0.00 2.44
195 196 0.882484 CCCAAATTTGCGCCGGTTTT 60.882 50.000 12.92 0.00 0.00 2.43
196 197 1.301322 CCCAAATTTGCGCCGGTTT 60.301 52.632 12.92 0.00 0.00 3.27
197 198 2.341911 CCCAAATTTGCGCCGGTT 59.658 55.556 12.92 0.00 0.00 4.44
198 199 4.371590 GCCCAAATTTGCGCCGGT 62.372 61.111 15.50 0.00 0.00 5.28
203 204 4.449568 CCCCGGCCCAAATTTGCG 62.450 66.667 12.92 10.68 0.00 4.85
204 205 2.366393 ATCCCCGGCCCAAATTTGC 61.366 57.895 12.92 2.19 0.00 3.68
205 206 1.521616 CATCCCCGGCCCAAATTTG 59.478 57.895 11.40 11.40 0.00 2.32
206 207 1.688884 CCATCCCCGGCCCAAATTT 60.689 57.895 0.00 0.00 0.00 1.82
207 208 2.042025 CCATCCCCGGCCCAAATT 60.042 61.111 0.00 0.00 0.00 1.82
208 209 4.156215 CCCATCCCCGGCCCAAAT 62.156 66.667 0.00 0.00 0.00 2.32
214 215 4.104183 TTTCGACCCATCCCCGGC 62.104 66.667 0.00 0.00 0.00 6.13
215 216 2.189521 CTTTCGACCCATCCCCGG 59.810 66.667 0.00 0.00 0.00 5.73
216 217 2.513897 GCTTTCGACCCATCCCCG 60.514 66.667 0.00 0.00 0.00 5.73
217 218 2.513897 CGCTTTCGACCCATCCCC 60.514 66.667 0.00 0.00 38.10 4.81
218 219 2.513897 CCGCTTTCGACCCATCCC 60.514 66.667 0.00 0.00 38.10 3.85
219 220 1.814169 GTCCGCTTTCGACCCATCC 60.814 63.158 0.00 0.00 38.10 3.51
220 221 1.079405 TGTCCGCTTTCGACCCATC 60.079 57.895 0.00 0.00 38.10 3.51
221 222 1.375523 GTGTCCGCTTTCGACCCAT 60.376 57.895 0.00 0.00 38.10 4.00
222 223 2.029964 GTGTCCGCTTTCGACCCA 59.970 61.111 0.00 0.00 38.10 4.51
223 224 3.110178 CGTGTCCGCTTTCGACCC 61.110 66.667 0.00 0.00 38.10 4.46
224 225 1.216941 TTTCGTGTCCGCTTTCGACC 61.217 55.000 0.00 0.00 38.10 4.79
225 226 0.111398 GTTTCGTGTCCGCTTTCGAC 60.111 55.000 0.00 0.00 38.10 4.20
226 227 1.542272 CGTTTCGTGTCCGCTTTCGA 61.542 55.000 0.00 0.00 38.10 3.71
227 228 1.154908 CGTTTCGTGTCCGCTTTCG 60.155 57.895 0.00 0.00 0.00 3.46
228 229 1.203313 CCGTTTCGTGTCCGCTTTC 59.797 57.895 0.00 0.00 0.00 2.62
229 230 1.227321 TCCGTTTCGTGTCCGCTTT 60.227 52.632 0.00 0.00 0.00 3.51
230 231 1.952635 GTCCGTTTCGTGTCCGCTT 60.953 57.895 0.00 0.00 0.00 4.68
231 232 2.355481 GTCCGTTTCGTGTCCGCT 60.355 61.111 0.00 0.00 0.00 5.52
232 233 1.764180 TTTGTCCGTTTCGTGTCCGC 61.764 55.000 0.00 0.00 0.00 5.54
233 234 0.651551 TTTTGTCCGTTTCGTGTCCG 59.348 50.000 0.00 0.00 0.00 4.79
234 235 1.667212 ACTTTTGTCCGTTTCGTGTCC 59.333 47.619 0.00 0.00 0.00 4.02
235 236 2.965239 GACTTTTGTCCGTTTCGTGTC 58.035 47.619 0.00 0.00 43.37 3.67
247 248 1.029681 GGGAGCAAACGGACTTTTGT 58.970 50.000 3.71 0.00 38.51 2.83
248 249 0.040425 CGGGAGCAAACGGACTTTTG 60.040 55.000 0.00 0.00 39.15 2.44
249 250 2.327228 CGGGAGCAAACGGACTTTT 58.673 52.632 0.00 0.00 0.00 2.27
250 251 4.058797 CGGGAGCAAACGGACTTT 57.941 55.556 0.00 0.00 0.00 2.66
277 278 4.653888 AAGGGACAAACCGGGCGG 62.654 66.667 6.32 0.00 40.11 6.13
278 279 0.890090 TAAAAGGGACAAACCGGGCG 60.890 55.000 6.32 0.00 40.11 6.13
279 280 0.599558 GTAAAAGGGACAAACCGGGC 59.400 55.000 6.32 0.00 40.11 6.13
280 281 1.250328 GGTAAAAGGGACAAACCGGG 58.750 55.000 6.32 0.00 40.11 5.73
281 282 1.250328 GGGTAAAAGGGACAAACCGG 58.750 55.000 0.00 0.00 40.11 5.28
282 283 1.250328 GGGGTAAAAGGGACAAACCG 58.750 55.000 0.00 0.00 40.11 4.44
283 284 2.385135 TGGGGTAAAAGGGACAAACC 57.615 50.000 0.00 0.00 38.08 3.27
284 285 4.345547 TCATTTGGGGTAAAAGGGACAAAC 59.654 41.667 0.00 0.00 31.61 2.93
285 286 4.557705 TCATTTGGGGTAAAAGGGACAAA 58.442 39.130 0.00 0.00 33.11 2.83
286 287 4.200447 TCATTTGGGGTAAAAGGGACAA 57.800 40.909 0.00 0.00 0.00 3.18
287 288 3.898741 GTTCATTTGGGGTAAAAGGGACA 59.101 43.478 0.00 0.00 31.19 4.02
288 289 3.057104 CGTTCATTTGGGGTAAAAGGGAC 60.057 47.826 0.00 0.00 0.00 4.46
289 290 3.158676 CGTTCATTTGGGGTAAAAGGGA 58.841 45.455 0.00 0.00 0.00 4.20
290 291 2.232696 CCGTTCATTTGGGGTAAAAGGG 59.767 50.000 0.00 0.00 0.00 3.95
291 292 2.232696 CCCGTTCATTTGGGGTAAAAGG 59.767 50.000 0.00 0.00 42.05 3.11
292 293 3.586100 CCCGTTCATTTGGGGTAAAAG 57.414 47.619 0.00 0.00 42.05 2.27
299 300 2.043980 CCGTCCCCGTTCATTTGGG 61.044 63.158 0.00 0.00 45.58 4.12
300 301 1.003112 TCCGTCCCCGTTCATTTGG 60.003 57.895 0.00 0.00 0.00 3.28
301 302 0.604243 TGTCCGTCCCCGTTCATTTG 60.604 55.000 0.00 0.00 0.00 2.32
302 303 0.321298 CTGTCCGTCCCCGTTCATTT 60.321 55.000 0.00 0.00 0.00 2.32
303 304 1.295423 CTGTCCGTCCCCGTTCATT 59.705 57.895 0.00 0.00 0.00 2.57
304 305 2.656069 CCTGTCCGTCCCCGTTCAT 61.656 63.158 0.00 0.00 0.00 2.57
305 306 3.307906 CCTGTCCGTCCCCGTTCA 61.308 66.667 0.00 0.00 0.00 3.18
306 307 1.039233 TATCCTGTCCGTCCCCGTTC 61.039 60.000 0.00 0.00 0.00 3.95
307 308 1.000739 TATCCTGTCCGTCCCCGTT 59.999 57.895 0.00 0.00 0.00 4.44
308 309 1.455217 CTATCCTGTCCGTCCCCGT 60.455 63.158 0.00 0.00 0.00 5.28
309 310 2.201022 CCTATCCTGTCCGTCCCCG 61.201 68.421 0.00 0.00 0.00 5.73
310 311 1.837499 CCCTATCCTGTCCGTCCCC 60.837 68.421 0.00 0.00 0.00 4.81
311 312 1.837499 CCCCTATCCTGTCCGTCCC 60.837 68.421 0.00 0.00 0.00 4.46
312 313 1.075450 ACCCCTATCCTGTCCGTCC 60.075 63.158 0.00 0.00 0.00 4.79
313 314 1.453762 CGACCCCTATCCTGTCCGTC 61.454 65.000 0.00 0.00 0.00 4.79
314 315 1.455217 CGACCCCTATCCTGTCCGT 60.455 63.158 0.00 0.00 0.00 4.69
315 316 2.857744 GCGACCCCTATCCTGTCCG 61.858 68.421 0.00 0.00 0.00 4.79
316 317 2.857744 CGCGACCCCTATCCTGTCC 61.858 68.421 0.00 0.00 0.00 4.02
317 318 2.728817 CGCGACCCCTATCCTGTC 59.271 66.667 0.00 0.00 0.00 3.51
318 319 3.537874 GCGCGACCCCTATCCTGT 61.538 66.667 12.10 0.00 0.00 4.00
319 320 4.647615 CGCGCGACCCCTATCCTG 62.648 72.222 28.94 0.00 0.00 3.86
322 323 4.944372 CACCGCGCGACCCCTATC 62.944 72.222 34.63 0.00 0.00 2.08
333 334 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
334 335 2.038837 GTTAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 34.06 5.68
335 336 0.953960 GTGTTAGGCCAACTCCACCG 60.954 60.000 5.01 0.00 38.05 4.94
336 337 0.953960 CGTGTTAGGCCAACTCCACC 60.954 60.000 5.01 0.00 38.05 4.61
337 338 0.953960 CCGTGTTAGGCCAACTCCAC 60.954 60.000 5.01 3.15 38.05 4.02
338 339 1.122632 TCCGTGTTAGGCCAACTCCA 61.123 55.000 5.01 0.00 38.05 3.86
339 340 0.391263 CTCCGTGTTAGGCCAACTCC 60.391 60.000 5.01 2.40 38.05 3.85
340 341 0.606604 TCTCCGTGTTAGGCCAACTC 59.393 55.000 5.01 7.70 38.05 3.01
341 342 1.053424 TTCTCCGTGTTAGGCCAACT 58.947 50.000 5.01 0.00 38.05 3.16
342 343 1.886886 TTTCTCCGTGTTAGGCCAAC 58.113 50.000 5.01 8.36 37.67 3.77
343 344 2.871096 ATTTCTCCGTGTTAGGCCAA 57.129 45.000 5.01 0.00 0.00 4.52
344 345 2.871096 AATTTCTCCGTGTTAGGCCA 57.129 45.000 5.01 0.00 0.00 5.36
345 346 2.422479 GGAAATTTCTCCGTGTTAGGCC 59.578 50.000 17.42 0.00 0.00 5.19
346 347 2.422479 GGGAAATTTCTCCGTGTTAGGC 59.578 50.000 17.42 0.00 36.21 3.93
347 348 3.439129 GTGGGAAATTTCTCCGTGTTAGG 59.561 47.826 15.49 0.00 36.21 2.69
348 349 3.439129 GGTGGGAAATTTCTCCGTGTTAG 59.561 47.826 15.49 0.00 36.21 2.34
349 350 3.414269 GGTGGGAAATTTCTCCGTGTTA 58.586 45.455 15.49 0.00 36.21 2.41
350 351 2.235891 GGTGGGAAATTTCTCCGTGTT 58.764 47.619 15.49 0.00 36.21 3.32
351 352 1.880646 CGGTGGGAAATTTCTCCGTGT 60.881 52.381 25.89 0.00 36.21 4.49
352 353 0.802494 CGGTGGGAAATTTCTCCGTG 59.198 55.000 25.89 11.64 36.21 4.94
353 354 0.688487 TCGGTGGGAAATTTCTCCGT 59.312 50.000 29.15 0.00 36.21 4.69
513 523 3.053896 CCGTCAGGGGGTTTTCGC 61.054 66.667 0.00 0.00 0.00 4.70
554 564 1.740664 GGCGGAAAAGGTCTCGTCC 60.741 63.158 0.00 0.00 0.00 4.79
1440 1471 1.097232 CAGCTTCATCGCCCAAATCA 58.903 50.000 0.00 0.00 0.00 2.57
1445 1476 2.124983 GAGCAGCTTCATCGCCCA 60.125 61.111 0.00 0.00 0.00 5.36
1467 1498 0.314302 ACTCCACGTCAAGAACCTCG 59.686 55.000 0.87 0.00 0.00 4.63
1501 1532 2.194212 CCAGATCATGCTGCTGGGC 61.194 63.158 16.16 0.00 44.24 5.36
1510 1544 1.164662 CCTTCAGCGCCCAGATCATG 61.165 60.000 2.29 0.00 0.00 3.07
1529 1563 2.047179 GGACTTCACTCGGGGCAC 60.047 66.667 0.00 0.00 0.00 5.01
1667 1701 2.435586 CAGCTTGCACTCCCTCCG 60.436 66.667 0.00 0.00 0.00 4.63
1747 1781 1.210204 TGCTCCTCCTGCTTCCCAAT 61.210 55.000 0.00 0.00 0.00 3.16
1748 1782 1.426251 TTGCTCCTCCTGCTTCCCAA 61.426 55.000 0.00 0.00 0.00 4.12
1799 1833 1.071471 ACTCTTGGAGCCACAACGG 59.929 57.895 0.00 0.00 32.04 4.44
1879 1913 5.006386 AGCTTCCTCCTTATTGTGAACTTG 58.994 41.667 0.00 0.00 0.00 3.16
1966 2012 8.497554 GCTGACATTTAGATCATCAGATTTCTC 58.502 37.037 3.80 0.00 39.33 2.87
2310 2356 7.432545 ACGAGTATCAAAGATAGATGAAACACG 59.567 37.037 0.00 0.00 33.17 4.49
2317 2363 7.429633 AGTGGAACGAGTATCAAAGATAGATG 58.570 38.462 0.00 0.00 45.86 2.90
2322 2368 8.012957 AGATAAGTGGAACGAGTATCAAAGAT 57.987 34.615 0.00 0.00 45.86 2.40
2358 2406 7.741027 ATCATTGACTAATATGACTTGCTGG 57.259 36.000 0.00 0.00 33.90 4.85
2391 2444 2.288729 GGTTGGGTACTCAAACGTGTTC 59.711 50.000 10.42 0.00 0.00 3.18
2566 2696 4.134563 AGTTACCTGGTTTAAGTGCACAG 58.865 43.478 21.04 5.39 0.00 3.66
2740 2870 5.356470 AGAAGTAATAGACACGGTACCAGAC 59.644 44.000 13.54 4.23 0.00 3.51
2798 2928 7.817962 AGACATCCTTACACACTACACATTTAC 59.182 37.037 0.00 0.00 0.00 2.01
2829 2961 6.402550 CCTTATCCATTGACGAAAGAACAGTG 60.403 42.308 0.00 0.00 0.00 3.66
2831 2963 5.447818 GCCTTATCCATTGACGAAAGAACAG 60.448 44.000 0.00 0.00 0.00 3.16
2897 3029 9.561069 GGGTTCATCTGTTCATGTATAGTTTAT 57.439 33.333 0.00 0.00 0.00 1.40
2898 3030 8.544622 TGGGTTCATCTGTTCATGTATAGTTTA 58.455 33.333 0.00 0.00 0.00 2.01
2986 3121 4.217983 TGCTTGATTCATGTTGTGCATACA 59.782 37.500 7.02 7.02 35.74 2.29
2987 3122 4.735985 TGCTTGATTCATGTTGTGCATAC 58.264 39.130 0.00 0.00 35.74 2.39
3392 3533 1.240256 GTCCCACGTGCCAATTACAA 58.760 50.000 10.91 0.00 0.00 2.41
3480 3621 7.120923 TGTCTGGGAGGATAAAATACTGTAC 57.879 40.000 0.00 0.00 0.00 2.90
3485 3626 6.043243 TGAGGATGTCTGGGAGGATAAAATAC 59.957 42.308 0.00 0.00 0.00 1.89
3498 3639 0.749049 TGCGATCTGAGGATGTCTGG 59.251 55.000 0.00 0.00 31.46 3.86
3601 3756 9.615660 ATTTTGGAGTACAGGTGGATATCTATA 57.384 33.333 2.05 0.00 0.00 1.31
3686 3841 8.085909 CCCAAACTAAAAGGTGGTAAAATAGTG 58.914 37.037 0.00 0.00 0.00 2.74
3713 3869 5.212589 AGATTTACAATTTCGTACACGGC 57.787 39.130 1.39 0.00 40.29 5.68
3716 3872 6.304683 GGCACAAGATTTACAATTTCGTACAC 59.695 38.462 0.00 0.00 0.00 2.90
3769 3925 8.883731 CAGACCAACCTATAACATTGAGTTTAG 58.116 37.037 0.00 0.00 41.64 1.85
3846 4002 1.480137 AGAAGGCAGATCGACAGAAGG 59.520 52.381 0.00 0.00 0.00 3.46
3847 4003 2.094286 ACAGAAGGCAGATCGACAGAAG 60.094 50.000 0.00 0.00 0.00 2.85
3929 4085 2.963101 ACCTTACCCCAAAGAAACTTGC 59.037 45.455 0.00 0.00 0.00 4.01
3937 4093 2.039879 ACTGCTGTACCTTACCCCAAAG 59.960 50.000 0.00 0.00 0.00 2.77
4046 4202 0.901827 TTGCGGACAGGCTTCTCATA 59.098 50.000 0.00 0.00 0.00 2.15
4081 4237 6.874134 CACAGCAGTACACTCTAGGTTTAAAT 59.126 38.462 0.00 0.00 0.00 1.40
4128 4284 5.346522 GTTAACAGGTAAGGACAGGTATCG 58.653 45.833 0.00 0.00 0.00 2.92
4211 4367 6.151691 ACAGTTTATTGCTCGTAACTCGTAA 58.848 36.000 0.00 0.00 40.80 3.18
4212 4368 5.702865 ACAGTTTATTGCTCGTAACTCGTA 58.297 37.500 0.00 0.00 40.80 3.43
4214 4370 6.807708 ATACAGTTTATTGCTCGTAACTCG 57.192 37.500 0.00 0.00 41.41 4.18
4220 4497 5.416083 TGCAGTATACAGTTTATTGCTCGT 58.584 37.500 16.02 0.00 34.47 4.18
4284 4561 9.847224 AAGACAAATCTACCAGTTTCTTTTCTA 57.153 29.630 0.00 0.00 33.57 2.10
4897 5180 5.422214 ACACAGAACCCCTAAGAATACAG 57.578 43.478 0.00 0.00 0.00 2.74
5213 9145 9.543018 GCTTGTATGAGTAGTCATTGTTAAAAC 57.457 33.333 18.02 8.99 40.84 2.43
5345 9277 2.170397 CCAGCACCATACATACCAGTCA 59.830 50.000 0.00 0.00 0.00 3.41
5383 9316 5.536161 ACAACTACAGTGCTGGAAATTTCAT 59.464 36.000 19.49 0.00 34.19 2.57
5435 9371 3.731431 ACAGGGTTACCATACCAGATCA 58.269 45.455 2.98 0.00 40.09 2.92
5498 9434 3.926527 TCCTGTCAAGAAATTCATCGACG 59.073 43.478 0.00 0.00 0.00 5.12
5603 9539 1.251251 AGGAGCAAGTGAACCAATGC 58.749 50.000 0.00 0.00 39.06 3.56
5610 9546 9.747898 TTATTTTATTTCCTAGGAGCAAGTGAA 57.252 29.630 12.26 1.65 0.00 3.18
5612 9548 8.131731 GCTTATTTTATTTCCTAGGAGCAAGTG 58.868 37.037 12.26 0.00 0.00 3.16
5616 9552 6.263168 GCAGCTTATTTTATTTCCTAGGAGCA 59.737 38.462 12.26 3.20 0.00 4.26
5617 9553 6.263168 TGCAGCTTATTTTATTTCCTAGGAGC 59.737 38.462 12.26 7.85 0.00 4.70
5649 9585 9.554724 GCTGTCATAAAATTTAACTTCATTCGA 57.445 29.630 0.00 0.00 0.00 3.71
5650 9586 9.559958 AGCTGTCATAAAATTTAACTTCATTCG 57.440 29.630 0.00 0.00 0.00 3.34
5668 9604 6.409704 ACATATCACTACAAACAGCTGTCAT 58.590 36.000 21.95 9.73 0.00 3.06
5694 9630 7.951530 ATTTAAAATCAACAGCCAGAAACAG 57.048 32.000 0.00 0.00 0.00 3.16
5695 9631 7.984050 TGAATTTAAAATCAACAGCCAGAAACA 59.016 29.630 3.42 0.00 0.00 2.83
5696 9632 8.364129 TGAATTTAAAATCAACAGCCAGAAAC 57.636 30.769 3.42 0.00 0.00 2.78
5723 9659 2.784682 AGTTGGGTTGGTTAGGGTTACA 59.215 45.455 0.00 0.00 0.00 2.41
5724 9660 3.513909 AGTTGGGTTGGTTAGGGTTAC 57.486 47.619 0.00 0.00 0.00 2.50
5743 9680 9.067986 AGAAACTAAAGGTCCAAATTCAGTTAG 57.932 33.333 0.00 0.00 0.00 2.34
5746 9683 7.060421 TGAGAAACTAAAGGTCCAAATTCAGT 58.940 34.615 0.00 0.00 0.00 3.41
5763 9700 7.282450 ACGGAAAAGTAAACTGATTGAGAAACT 59.718 33.333 0.00 0.00 0.00 2.66
5764 9701 7.415229 ACGGAAAAGTAAACTGATTGAGAAAC 58.585 34.615 0.00 0.00 0.00 2.78
5768 9705 6.787085 AGACGGAAAAGTAAACTGATTGAG 57.213 37.500 0.00 0.00 0.00 3.02
5769 9706 6.512741 GCAAGACGGAAAAGTAAACTGATTGA 60.513 38.462 0.00 0.00 0.00 2.57
5780 9717 1.134220 TGAGTGGCAAGACGGAAAAGT 60.134 47.619 0.00 0.00 0.00 2.66
5781 9718 1.593196 TGAGTGGCAAGACGGAAAAG 58.407 50.000 0.00 0.00 0.00 2.27
5787 9724 2.066262 ACGTAATTGAGTGGCAAGACG 58.934 47.619 0.00 0.00 46.71 4.18
5792 9729 6.561737 TTGATAAAACGTAATTGAGTGGCA 57.438 33.333 0.00 0.00 0.00 4.92
5793 9730 7.753132 TGAATTGATAAAACGTAATTGAGTGGC 59.247 33.333 0.00 0.00 0.00 5.01
5794 9731 9.277565 CTGAATTGATAAAACGTAATTGAGTGG 57.722 33.333 0.00 0.00 0.00 4.00
5799 9736 8.985694 GTCGACTGAATTGATAAAACGTAATTG 58.014 33.333 8.70 0.00 0.00 2.32
5800 9737 8.173130 GGTCGACTGAATTGATAAAACGTAATT 58.827 33.333 16.46 0.00 0.00 1.40
5805 9742 4.630069 AGGGTCGACTGAATTGATAAAACG 59.370 41.667 16.46 0.00 0.00 3.60
5818 9755 4.154195 CCTGAAAATTTACAGGGTCGACTG 59.846 45.833 16.46 9.45 46.76 3.51
5848 9785 0.976641 ATTCAGCAGGGACGTCAGAA 59.023 50.000 18.91 10.85 0.00 3.02
5863 9800 3.915536 TGATGACCGTTACGTTCATTCA 58.084 40.909 18.01 13.95 0.00 2.57
5884 9824 6.992123 TGATATCACCGATGCAAGAAATACTT 59.008 34.615 0.00 0.00 39.70 2.24
5927 9867 3.200605 TCTTATGAGGAAGGCATCAGCAA 59.799 43.478 0.00 0.00 44.61 3.91
5966 9906 5.345741 GCACTAATATTTGCACAACCACAAG 59.654 40.000 7.16 0.00 38.68 3.16
5979 9919 7.147915 CCAACACCCATTACAGCACTAATATTT 60.148 37.037 0.00 0.00 0.00 1.40
6059 9999 2.972713 AGGTTGATACTGGCCGATACAT 59.027 45.455 0.00 0.00 0.00 2.29
6106 10046 9.854303 ATACAATTACCCCTTACCATAGATACT 57.146 33.333 0.00 0.00 0.00 2.12
6108 10048 8.545472 GCATACAATTACCCCTTACCATAGATA 58.455 37.037 0.00 0.00 0.00 1.98
6121 10062 2.484264 GCGAGATGGCATACAATTACCC 59.516 50.000 0.00 0.00 0.00 3.69
6179 10120 2.073252 TCAGTGCGAGATGGGTAGAT 57.927 50.000 0.00 0.00 0.00 1.98
6180 10121 1.847328 TTCAGTGCGAGATGGGTAGA 58.153 50.000 0.00 0.00 0.00 2.59
6187 10264 4.397481 TGAGATGATTTCAGTGCGAGAT 57.603 40.909 0.00 0.00 0.00 2.75
6250 10327 2.983592 CCGGAAGCCAAAACGCCT 60.984 61.111 0.00 0.00 0.00 5.52
6334 10411 6.311935 GCCACTAACACGAACATCTATAAACA 59.688 38.462 0.00 0.00 0.00 2.83
6335 10412 6.507456 CGCCACTAACACGAACATCTATAAAC 60.507 42.308 0.00 0.00 0.00 2.01
6343 10420 0.601576 TGCGCCACTAACACGAACAT 60.602 50.000 4.18 0.00 0.00 2.71
6345 10422 0.110823 CTTGCGCCACTAACACGAAC 60.111 55.000 4.18 0.00 0.00 3.95
6348 10425 1.911293 ATGCTTGCGCCACTAACACG 61.911 55.000 4.18 0.00 34.43 4.49
6358 10435 2.000429 AAATTCAAGGATGCTTGCGC 58.000 45.000 21.14 0.00 34.56 6.09
6518 10598 4.900635 AGGTTGTCTTTGTCACATTCAC 57.099 40.909 0.00 0.00 0.00 3.18
6534 10614 7.841915 AAGTTCCAACAAAAATTGTAGGTTG 57.158 32.000 6.24 6.24 44.59 3.77
6604 10684 1.234615 AACTCCATTGGTGTTCGCCG 61.235 55.000 15.64 0.00 34.86 6.46
6610 10690 3.157087 GTCATTGGAACTCCATTGGTGT 58.843 45.455 16.72 4.56 46.97 4.16
6617 10700 3.486383 GGTGAAAGTCATTGGAACTCCA 58.514 45.455 0.00 0.00 45.94 3.86
6621 10704 4.584743 AGAAAGGGTGAAAGTCATTGGAAC 59.415 41.667 0.00 0.00 0.00 3.62
6626 10709 5.449553 ACTGAAGAAAGGGTGAAAGTCATT 58.550 37.500 0.00 0.00 0.00 2.57
6646 10729 3.641434 AGTCATGGGGAGAATCAACTG 57.359 47.619 0.00 0.00 36.25 3.16
6689 10774 4.821805 CACCACACAAGGAACTGAACTATT 59.178 41.667 0.00 0.00 40.86 1.73
6852 10952 4.580835 GCCACTTCTCCGTCAGAC 57.419 61.111 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.