Multiple sequence alignment - TraesCS4D01G227200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G227200 chr4D 100.000 7689 0 0 1 7689 386439565 386431877 0.000000e+00 14200.0
1 TraesCS4D01G227200 chr4D 98.286 700 10 2 4214 4911 51301639 51300940 0.000000e+00 1225.0
2 TraesCS4D01G227200 chr4D 96.146 519 12 6 4907 5420 51300916 51300401 0.000000e+00 841.0
3 TraesCS4D01G227200 chr4D 90.517 116 11 0 1610 1725 88122203 88122318 3.720000e-33 154.0
4 TraesCS4D01G227200 chr4D 90.805 87 8 0 2282 2368 88122518 88122604 4.880000e-22 117.0
5 TraesCS4D01G227200 chr4D 86.250 80 10 1 5530 5608 31438517 31438438 1.370000e-12 86.1
6 TraesCS4D01G227200 chr6D 99.255 1208 7 2 4214 5419 436639876 436641083 0.000000e+00 2180.0
7 TraesCS4D01G227200 chr6D 96.423 699 22 3 4214 4911 278628797 278629493 0.000000e+00 1149.0
8 TraesCS4D01G227200 chr6D 94.412 519 22 5 4907 5420 278629517 278630033 0.000000e+00 791.0
9 TraesCS4D01G227200 chr6D 88.950 543 38 10 1 537 108818433 108817907 0.000000e+00 651.0
10 TraesCS4D01G227200 chr6D 88.368 533 51 8 1 525 80339770 80340299 1.410000e-176 630.0
11 TraesCS4D01G227200 chr7D 99.090 1209 11 0 4213 5421 394235026 394233818 0.000000e+00 2172.0
12 TraesCS4D01G227200 chr7D 98.706 773 9 1 6917 7689 605574911 605574140 0.000000e+00 1371.0
13 TraesCS4D01G227200 chr7D 98.458 778 9 3 6913 7689 89273738 89272963 0.000000e+00 1367.0
14 TraesCS4D01G227200 chr7D 96.137 699 25 2 4214 4911 604990680 604991377 0.000000e+00 1140.0
15 TraesCS4D01G227200 chr7D 94.275 524 20 7 4907 5422 604991401 604991922 0.000000e+00 793.0
16 TraesCS4D01G227200 chr7D 88.555 533 51 10 1 525 168504105 168503575 8.410000e-179 638.0
17 TraesCS4D01G227200 chr7D 87.640 534 50 13 1 523 16790805 16791333 2.370000e-169 606.0
18 TraesCS4D01G227200 chr4B 89.665 1761 81 45 660 2370 473572611 473570902 0.000000e+00 2150.0
19 TraesCS4D01G227200 chr4B 92.932 1330 52 24 2901 4214 473570508 473569205 0.000000e+00 1897.0
20 TraesCS4D01G227200 chr4B 90.423 710 27 15 6227 6918 473569120 473568434 0.000000e+00 896.0
21 TraesCS4D01G227200 chr4B 86.512 215 18 6 2616 2829 473570706 473570502 7.760000e-55 226.0
22 TraesCS4D01G227200 chr4B 96.154 130 5 0 538 667 473580659 473580530 6.040000e-51 213.0
23 TraesCS4D01G227200 chr4B 98.039 102 2 0 2468 2569 473570807 473570706 2.200000e-40 178.0
24 TraesCS4D01G227200 chr4B 90.244 123 10 2 1603 1725 124741906 124742026 7.990000e-35 159.0
25 TraesCS4D01G227200 chr4B 88.288 111 10 3 2390 2498 473570916 473570807 6.260000e-26 130.0
26 TraesCS4D01G227200 chr4B 90.909 88 6 2 2282 2368 124742226 124742312 4.880000e-22 117.0
27 TraesCS4D01G227200 chr4B 95.082 61 3 0 5480 5540 473569178 473569118 6.350000e-16 97.1
28 TraesCS4D01G227200 chr4B 91.489 47 3 1 6184 6229 494676296 494676342 6.440000e-06 63.9
29 TraesCS4D01G227200 chr2D 97.690 1212 21 7 4210 5419 638455757 638454551 0.000000e+00 2076.0
30 TraesCS4D01G227200 chr2D 98.711 776 8 2 6915 7689 250191790 250191016 0.000000e+00 1376.0
31 TraesCS4D01G227200 chr2D 98.708 774 8 2 6917 7689 547223938 547223166 0.000000e+00 1373.0
32 TraesCS4D01G227200 chr1D 97.362 1213 28 4 4214 5426 61443331 61444539 0.000000e+00 2060.0
33 TraesCS4D01G227200 chr1D 92.017 476 34 4 3429 3902 62599376 62598903 0.000000e+00 665.0
34 TraesCS4D01G227200 chr1D 92.073 164 13 0 1885 2048 374473270 374473107 1.670000e-56 231.0
35 TraesCS4D01G227200 chr1D 90.083 121 11 1 1605 1725 62600895 62600776 1.030000e-33 156.0
36 TraesCS4D01G227200 chr1D 77.500 160 30 3 2167 2320 45263307 45263148 2.950000e-14 91.6
37 TraesCS4D01G227200 chr4A 88.107 1690 104 47 746 2370 67895176 67893519 0.000000e+00 1917.0
38 TraesCS4D01G227200 chr4A 95.843 842 32 3 3375 4214 67892579 67891739 0.000000e+00 1358.0
39 TraesCS4D01G227200 chr4A 93.027 588 22 4 6332 6918 67891490 67890921 0.000000e+00 841.0
40 TraesCS4D01G227200 chr4A 89.765 469 21 14 2880 3345 67893018 67892574 6.690000e-160 575.0
41 TraesCS4D01G227200 chr4A 88.263 426 23 8 2445 2852 67893435 67893019 1.160000e-132 484.0
42 TraesCS4D01G227200 chr4A 84.494 445 60 8 3432 3870 500901712 500902153 1.530000e-116 431.0
43 TraesCS4D01G227200 chr4A 89.474 209 12 7 539 739 67895591 67895385 9.900000e-64 255.0
44 TraesCS4D01G227200 chr4A 89.655 116 12 0 1610 1725 500901218 500901333 1.730000e-31 148.0
45 TraesCS4D01G227200 chr4A 89.720 107 5 3 6227 6330 67891654 67891551 1.740000e-26 132.0
46 TraesCS4D01G227200 chr4A 89.655 87 9 0 2282 2368 500901533 500901619 2.270000e-20 111.0
47 TraesCS4D01G227200 chr4A 96.721 61 2 0 5480 5540 67891712 67891652 1.370000e-17 102.0
48 TraesCS4D01G227200 chr4A 87.805 82 10 0 5538 5619 361656214 361656133 6.350000e-16 97.1
49 TraesCS4D01G227200 chr4A 100.000 28 0 0 5420 5447 67891748 67891721 1.400000e-02 52.8
50 TraesCS4D01G227200 chr3D 98.837 774 7 2 6917 7689 491627753 491628525 0.000000e+00 1378.0
51 TraesCS4D01G227200 chr3D 98.834 772 8 1 6918 7689 297461381 297460611 0.000000e+00 1375.0
52 TraesCS4D01G227200 chr3D 98.708 774 8 2 6917 7689 46546748 46547520 0.000000e+00 1373.0
53 TraesCS4D01G227200 chr3D 98.333 780 11 2 6911 7689 288041811 288042589 0.000000e+00 1367.0
54 TraesCS4D01G227200 chr3D 96.154 702 24 3 4211 4911 395522915 395522216 0.000000e+00 1144.0
55 TraesCS4D01G227200 chr3D 94.253 522 22 6 4907 5422 395522192 395521673 0.000000e+00 791.0
56 TraesCS4D01G227200 chr3D 91.713 543 36 6 1 537 351244311 351244850 0.000000e+00 745.0
57 TraesCS4D01G227200 chr3D 85.106 470 70 0 3429 3898 476553620 476554089 1.500000e-131 481.0
58 TraesCS4D01G227200 chr3D 92.169 166 13 0 1883 2048 476551511 476551676 1.290000e-57 235.0
59 TraesCS4D01G227200 chr3D 88.983 118 13 0 1610 1727 476551269 476551386 6.220000e-31 147.0
60 TraesCS4D01G227200 chr5D 98.710 775 8 2 6916 7689 533563169 533562396 0.000000e+00 1375.0
61 TraesCS4D01G227200 chr5D 87.782 532 54 9 1 525 202832225 202831698 5.100000e-171 612.0
62 TraesCS4D01G227200 chr7A 96.449 704 22 2 4209 4911 722766233 722766934 0.000000e+00 1158.0
63 TraesCS4D01G227200 chr7A 94.197 517 24 4 4907 5419 722766958 722767472 0.000000e+00 784.0
64 TraesCS4D01G227200 chr3B 87.374 697 60 15 5540 6227 66369903 66370580 0.000000e+00 774.0
65 TraesCS4D01G227200 chr3B 85.381 472 68 1 3427 3898 635220432 635220902 8.970000e-134 488.0
66 TraesCS4D01G227200 chr3B 90.964 166 15 0 1883 2048 635218369 635218534 2.790000e-54 224.0
67 TraesCS4D01G227200 chr5B 88.658 626 47 10 5626 6235 491350001 491349384 0.000000e+00 741.0
68 TraesCS4D01G227200 chr5B 87.266 534 55 11 1 526 285621715 285622243 1.430000e-166 597.0
69 TraesCS4D01G227200 chr5B 94.792 96 5 0 5537 5632 491358652 491358557 4.810000e-32 150.0
70 TraesCS4D01G227200 chr5B 97.674 43 0 1 6189 6230 704094621 704094579 1.070000e-08 73.1
71 TraesCS4D01G227200 chr1B 89.925 536 44 7 4 533 165772720 165772189 0.000000e+00 682.0
72 TraesCS4D01G227200 chr1B 91.807 476 35 4 3429 3902 99753567 99753094 0.000000e+00 660.0
73 TraesCS4D01G227200 chr1B 84.631 488 54 14 3734 4214 98393784 98393311 4.200000e-127 466.0
74 TraesCS4D01G227200 chr1B 84.631 488 54 14 3734 4214 98441132 98440659 4.200000e-127 466.0
75 TraesCS4D01G227200 chr1B 80.506 395 44 20 1939 2320 65271435 65271061 9.830000e-69 272.0
76 TraesCS4D01G227200 chr1B 90.909 121 10 1 1605 1725 99755113 99754994 2.220000e-35 161.0
77 TraesCS4D01G227200 chr1B 97.368 38 1 0 5420 5457 98393320 98393283 1.790000e-06 65.8
78 TraesCS4D01G227200 chr1B 97.368 38 1 0 5420 5457 98440668 98440631 1.790000e-06 65.8
79 TraesCS4D01G227200 chr1B 91.667 48 3 1 6184 6230 615389770 615389817 1.790000e-06 65.8
80 TraesCS4D01G227200 chr1A 91.909 482 34 5 3424 3902 60737104 60737583 0.000000e+00 669.0
81 TraesCS4D01G227200 chr1A 93.176 381 20 3 3375 3751 459321821 459322199 8.720000e-154 555.0
82 TraesCS4D01G227200 chr1A 90.854 164 15 0 1885 2048 474227994 474227831 3.610000e-53 220.0
83 TraesCS4D01G227200 chr1A 86.275 204 9 5 2757 2958 459319687 459319873 3.640000e-48 204.0
84 TraesCS4D01G227200 chr1A 90.000 140 11 1 735 874 459318880 459319016 2.200000e-40 178.0
85 TraesCS4D01G227200 chr1A 82.791 215 18 9 1946 2160 45118806 45118611 2.850000e-39 174.0
86 TraesCS4D01G227200 chr1A 98.913 92 1 0 3251 3342 459321732 459321823 1.720000e-36 165.0
87 TraesCS4D01G227200 chr1A 87.500 136 6 5 2490 2619 459319523 459319653 6.220000e-31 147.0
88 TraesCS4D01G227200 chr1A 91.525 59 5 0 2262 2320 45114438 45114380 1.780000e-11 82.4
89 TraesCS4D01G227200 chr5A 86.232 552 61 12 1 541 39813541 39814088 1.110000e-162 584.0
90 TraesCS4D01G227200 chr5A 91.250 80 7 0 5538 5617 291737744 291737665 8.160000e-20 110.0
91 TraesCS4D01G227200 chr3A 84.937 478 71 1 3427 3904 620218453 620217977 4.170000e-132 483.0
92 TraesCS4D01G227200 chr3A 92.638 163 12 0 1886 2048 620220605 620220443 1.290000e-57 235.0
93 TraesCS4D01G227200 chr3A 87.218 133 16 1 1608 1739 620220797 620220665 4.810000e-32 150.0
94 TraesCS4D01G227200 chr3A 92.958 71 5 0 5538 5608 745529436 745529506 3.800000e-18 104.0
95 TraesCS4D01G227200 chr3A 95.122 41 1 1 6190 6229 746208909 746208869 6.440000e-06 63.9
96 TraesCS4D01G227200 chr2A 94.366 71 4 0 5538 5608 516887056 516886986 8.160000e-20 110.0
97 TraesCS4D01G227200 chr6A 97.619 42 0 1 6189 6229 53494685 53494644 3.850000e-08 71.3
98 TraesCS4D01G227200 chr2B 97.561 41 0 1 6190 6229 245692219 245692259 1.380000e-07 69.4
99 TraesCS4D01G227200 chr2B 97.561 41 0 1 6190 6229 699279785 699279825 1.380000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G227200 chr4D 386431877 386439565 7688 True 14200.000000 14200 100.000000 1 7689 1 chr4D.!!$R2 7688
1 TraesCS4D01G227200 chr4D 51300401 51301639 1238 True 1033.000000 1225 97.216000 4214 5420 2 chr4D.!!$R3 1206
2 TraesCS4D01G227200 chr6D 436639876 436641083 1207 False 2180.000000 2180 99.255000 4214 5419 1 chr6D.!!$F2 1205
3 TraesCS4D01G227200 chr6D 278628797 278630033 1236 False 970.000000 1149 95.417500 4214 5420 2 chr6D.!!$F3 1206
4 TraesCS4D01G227200 chr6D 108817907 108818433 526 True 651.000000 651 88.950000 1 537 1 chr6D.!!$R1 536
5 TraesCS4D01G227200 chr6D 80339770 80340299 529 False 630.000000 630 88.368000 1 525 1 chr6D.!!$F1 524
6 TraesCS4D01G227200 chr7D 394233818 394235026 1208 True 2172.000000 2172 99.090000 4213 5421 1 chr7D.!!$R3 1208
7 TraesCS4D01G227200 chr7D 605574140 605574911 771 True 1371.000000 1371 98.706000 6917 7689 1 chr7D.!!$R4 772
8 TraesCS4D01G227200 chr7D 89272963 89273738 775 True 1367.000000 1367 98.458000 6913 7689 1 chr7D.!!$R1 776
9 TraesCS4D01G227200 chr7D 604990680 604991922 1242 False 966.500000 1140 95.206000 4214 5422 2 chr7D.!!$F2 1208
10 TraesCS4D01G227200 chr7D 168503575 168504105 530 True 638.000000 638 88.555000 1 525 1 chr7D.!!$R2 524
11 TraesCS4D01G227200 chr7D 16790805 16791333 528 False 606.000000 606 87.640000 1 523 1 chr7D.!!$F1 522
12 TraesCS4D01G227200 chr4B 473568434 473572611 4177 True 796.300000 2150 91.563000 660 6918 7 chr4B.!!$R2 6258
13 TraesCS4D01G227200 chr2D 638454551 638455757 1206 True 2076.000000 2076 97.690000 4210 5419 1 chr2D.!!$R3 1209
14 TraesCS4D01G227200 chr2D 250191016 250191790 774 True 1376.000000 1376 98.711000 6915 7689 1 chr2D.!!$R1 774
15 TraesCS4D01G227200 chr2D 547223166 547223938 772 True 1373.000000 1373 98.708000 6917 7689 1 chr2D.!!$R2 772
16 TraesCS4D01G227200 chr1D 61443331 61444539 1208 False 2060.000000 2060 97.362000 4214 5426 1 chr1D.!!$F1 1212
17 TraesCS4D01G227200 chr1D 62598903 62600895 1992 True 410.500000 665 91.050000 1605 3902 2 chr1D.!!$R3 2297
18 TraesCS4D01G227200 chr4A 67890921 67895591 4670 True 635.200000 1917 92.324444 539 6918 9 chr4A.!!$R2 6379
19 TraesCS4D01G227200 chr4A 500901218 500902153 935 False 230.000000 431 87.934667 1610 3870 3 chr4A.!!$F1 2260
20 TraesCS4D01G227200 chr3D 491627753 491628525 772 False 1378.000000 1378 98.837000 6917 7689 1 chr3D.!!$F4 772
21 TraesCS4D01G227200 chr3D 297460611 297461381 770 True 1375.000000 1375 98.834000 6918 7689 1 chr3D.!!$R1 771
22 TraesCS4D01G227200 chr3D 46546748 46547520 772 False 1373.000000 1373 98.708000 6917 7689 1 chr3D.!!$F1 772
23 TraesCS4D01G227200 chr3D 288041811 288042589 778 False 1367.000000 1367 98.333000 6911 7689 1 chr3D.!!$F2 778
24 TraesCS4D01G227200 chr3D 395521673 395522915 1242 True 967.500000 1144 95.203500 4211 5422 2 chr3D.!!$R2 1211
25 TraesCS4D01G227200 chr3D 351244311 351244850 539 False 745.000000 745 91.713000 1 537 1 chr3D.!!$F3 536
26 TraesCS4D01G227200 chr3D 476551269 476554089 2820 False 287.666667 481 88.752667 1610 3898 3 chr3D.!!$F5 2288
27 TraesCS4D01G227200 chr5D 533562396 533563169 773 True 1375.000000 1375 98.710000 6916 7689 1 chr5D.!!$R2 773
28 TraesCS4D01G227200 chr5D 202831698 202832225 527 True 612.000000 612 87.782000 1 525 1 chr5D.!!$R1 524
29 TraesCS4D01G227200 chr7A 722766233 722767472 1239 False 971.000000 1158 95.323000 4209 5419 2 chr7A.!!$F1 1210
30 TraesCS4D01G227200 chr3B 66369903 66370580 677 False 774.000000 774 87.374000 5540 6227 1 chr3B.!!$F1 687
31 TraesCS4D01G227200 chr3B 635218369 635220902 2533 False 356.000000 488 88.172500 1883 3898 2 chr3B.!!$F2 2015
32 TraesCS4D01G227200 chr5B 491349384 491350001 617 True 741.000000 741 88.658000 5626 6235 1 chr5B.!!$R1 609
33 TraesCS4D01G227200 chr5B 285621715 285622243 528 False 597.000000 597 87.266000 1 526 1 chr5B.!!$F1 525
34 TraesCS4D01G227200 chr1B 165772189 165772720 531 True 682.000000 682 89.925000 4 533 1 chr1B.!!$R2 529
35 TraesCS4D01G227200 chr1B 99753094 99755113 2019 True 410.500000 660 91.358000 1605 3902 2 chr1B.!!$R5 2297
36 TraesCS4D01G227200 chr1B 98393283 98393784 501 True 265.900000 466 90.999500 3734 5457 2 chr1B.!!$R3 1723
37 TraesCS4D01G227200 chr1B 98440631 98441132 501 True 265.900000 466 90.999500 3734 5457 2 chr1B.!!$R4 1723
38 TraesCS4D01G227200 chr1A 459318880 459322199 3319 False 249.800000 555 91.172800 735 3751 5 chr1A.!!$F2 3016
39 TraesCS4D01G227200 chr5A 39813541 39814088 547 False 584.000000 584 86.232000 1 541 1 chr5A.!!$F1 540
40 TraesCS4D01G227200 chr3A 620217977 620220797 2820 True 289.333333 483 88.264333 1608 3904 3 chr3A.!!$R2 2296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 556 0.030235 GCCAAACCGTTCTCCAACAC 59.970 55.0 0.00 0.00 32.14 3.32 F
1200 1745 0.036483 TGAGCTTCATTACGCAGCCA 60.036 50.0 0.00 0.00 33.73 4.75 F
1878 2491 0.034896 CTAAAGAGGGTGTGCCGTGT 59.965 55.0 0.00 0.00 34.97 4.49 F
2436 3084 0.170339 CCCGCCCTTTCGTCAATTTC 59.830 55.0 0.00 0.00 0.00 2.17 F
2612 3338 0.317020 GCTCCGCCAATATTTCGTGC 60.317 55.0 6.24 6.35 0.00 5.34 F
3401 7996 0.320683 TCAGCTGTGTATGCAAGCGT 60.321 50.0 14.67 0.00 0.00 5.07 F
4064 8731 1.065031 CGTTTGCATTGCACGCCTAC 61.065 55.0 11.66 4.21 38.71 3.18 F
5477 10187 0.118346 TCCAGAGGTTAGCCCCAGAA 59.882 55.0 0.00 0.00 34.57 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 2171 0.302890 CATCAGCGGCGATTTCAGTC 59.697 55.000 12.98 0.00 0.00 3.51 R
2869 4032 0.108898 CAGCTCGCTCACTAGTTGCT 60.109 55.000 13.64 5.58 0.00 3.91 R
2870 4033 0.109086 TCAGCTCGCTCACTAGTTGC 60.109 55.000 0.00 0.00 0.00 4.17 R
4182 8852 0.896226 ACTCAAACTAGCCGGTCTCC 59.104 55.000 1.90 0.00 0.00 3.71 R
4206 8876 4.634443 ACCGGTGTAATTGACTCTTTATGC 59.366 41.667 6.12 0.00 0.00 3.14 R
5319 10029 0.679640 TGCAATAACTTGGCTCGGGG 60.680 55.000 0.00 0.00 32.72 5.73 R
5895 10621 0.107945 CCAGAGCAGTTCTAGGCCAC 60.108 60.000 5.01 0.00 33.83 5.01 R
6780 11592 0.323908 AAGCTCGCTCCCTACTCACT 60.324 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 3.755628 GCGACAGCCCACGGTCTA 61.756 66.667 0.00 0.00 38.67 2.59
53 55 4.869440 CAGCGCCGAGGCAGAGAG 62.869 72.222 15.03 0.00 42.06 3.20
278 282 0.178533 TGTTCGGGTTCTCCACGTTT 59.821 50.000 0.00 0.00 34.36 3.60
284 288 1.280206 GGTTCTCCACGTTTCGACGG 61.280 60.000 3.90 0.00 37.45 4.79
342 349 0.889306 CCCGTCTTCGAGGAGTTTCT 59.111 55.000 0.00 0.00 39.71 2.52
345 352 2.288273 CCGTCTTCGAGGAGTTTCTGTT 60.288 50.000 0.00 0.00 39.71 3.16
479 498 9.483489 TGAGACCCACTTGTACTCTTTATATAA 57.517 33.333 0.00 0.00 0.00 0.98
487 506 7.985752 ACTTGTACTCTTTATATAAGTGCACCC 59.014 37.037 14.63 0.00 35.75 4.61
537 556 0.030235 GCCAAACCGTTCTCCAACAC 59.970 55.000 0.00 0.00 32.14 3.32
549 568 2.031120 CTCCAACACCTCCAAAAGCAA 58.969 47.619 0.00 0.00 0.00 3.91
563 582 9.796120 CCTCCAAAAGCAATTTTCGTTAATATA 57.204 29.630 0.00 0.00 0.00 0.86
569 588 7.875327 AGCAATTTTCGTTAATATACCCACT 57.125 32.000 0.00 0.00 0.00 4.00
600 619 3.015327 CTCCAATTTGAAGAGAGCTGGG 58.985 50.000 0.00 0.00 0.00 4.45
611 630 2.604686 AGCTGGGTCTTCTCGGCA 60.605 61.111 1.78 0.00 37.71 5.69
630 649 0.323178 ATGCTGTTCTGCTTCCCCTG 60.323 55.000 3.65 0.00 0.00 4.45
702 729 0.390492 CACTGAGTCACTGCCTCACA 59.610 55.000 0.00 0.00 35.23 3.58
716 743 3.569701 TGCCTCACATTTTCTTTGTCCTC 59.430 43.478 0.00 0.00 0.00 3.71
717 744 3.823304 GCCTCACATTTTCTTTGTCCTCT 59.177 43.478 0.00 0.00 0.00 3.69
720 747 5.411053 CCTCACATTTTCTTTGTCCTCTCTC 59.589 44.000 0.00 0.00 0.00 3.20
721 748 6.179906 TCACATTTTCTTTGTCCTCTCTCT 57.820 37.500 0.00 0.00 0.00 3.10
722 749 6.226787 TCACATTTTCTTTGTCCTCTCTCTC 58.773 40.000 0.00 0.00 0.00 3.20
744 971 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
748 975 7.069344 TCTCTCTCTCTCTCTCTCTCTTATCA 58.931 42.308 0.00 0.00 0.00 2.15
813 1045 6.152379 AGAAAGCCATTTTTCTTTAAGCTCG 58.848 36.000 0.00 0.00 43.08 5.03
913 1445 1.751351 CTTCTCAGCATACCGACCTCA 59.249 52.381 0.00 0.00 0.00 3.86
920 1452 1.457831 ATACCGACCTCAGGGGCTC 60.458 63.158 0.00 0.00 38.87 4.70
921 1453 1.950748 ATACCGACCTCAGGGGCTCT 61.951 60.000 0.00 0.00 38.87 4.09
923 1455 2.128507 CCGACCTCAGGGGCTCTAC 61.129 68.421 0.00 0.00 38.87 2.59
924 1456 1.076632 CGACCTCAGGGGCTCTACT 60.077 63.158 0.00 0.00 38.87 2.57
925 1457 0.183014 CGACCTCAGGGGCTCTACTA 59.817 60.000 0.00 0.00 38.87 1.82
952 1487 1.070843 CGATCAACGAAACACAACGCT 60.071 47.619 0.00 0.00 45.77 5.07
1024 1569 2.108514 GCAGCAGCCAACGATAGCA 61.109 57.895 0.00 0.00 34.75 3.49
1025 1570 1.717937 CAGCAGCCAACGATAGCAC 59.282 57.895 0.00 0.00 42.67 4.40
1086 1631 1.786937 ACGAGGAGATGGAGCAAGAT 58.213 50.000 0.00 0.00 0.00 2.40
1167 1712 2.031163 GACGCCTGGTTCAGCTGT 59.969 61.111 14.67 0.00 0.00 4.40
1186 1731 1.073897 GCTTCCAACCAGGTGAGCT 59.926 57.895 0.00 0.00 41.35 4.09
1187 1732 0.538287 GCTTCCAACCAGGTGAGCTT 60.538 55.000 0.00 0.00 41.35 3.74
1200 1745 0.036483 TGAGCTTCATTACGCAGCCA 60.036 50.000 0.00 0.00 33.73 4.75
1201 1746 1.303309 GAGCTTCATTACGCAGCCAT 58.697 50.000 0.00 0.00 33.73 4.40
1202 1747 1.003116 GAGCTTCATTACGCAGCCATG 60.003 52.381 0.00 0.00 33.73 3.66
1231 1807 5.670485 TCTTGACATCTAACGCCATTGTAT 58.330 37.500 0.00 0.00 0.00 2.29
1232 1808 5.523552 TCTTGACATCTAACGCCATTGTATG 59.476 40.000 0.00 0.00 0.00 2.39
1237 1813 3.457234 TCTAACGCCATTGTATGAGCTG 58.543 45.455 0.00 0.00 0.00 4.24
1281 1857 1.657556 CGGTGCGAATGGTTTGGTT 59.342 52.632 0.00 0.00 0.00 3.67
1282 1858 0.386731 CGGTGCGAATGGTTTGGTTC 60.387 55.000 0.00 0.00 0.00 3.62
1283 1859 0.958822 GGTGCGAATGGTTTGGTTCT 59.041 50.000 0.00 0.00 0.00 3.01
1412 1988 1.871408 GCGTACCTCATCAGCATCCTG 60.871 57.143 0.00 0.00 40.54 3.86
1480 2056 2.290896 GGAACCATGTCATCCAGGTGAA 60.291 50.000 4.31 0.00 33.93 3.18
1489 2065 1.115467 ATCCAGGTGAACTAGCGAGG 58.885 55.000 0.00 0.00 0.00 4.63
1509 2085 1.006102 GAGAGACCACCACACCACG 60.006 63.158 0.00 0.00 0.00 4.94
1515 2091 0.106918 ACCACCACACCACGTTCATT 60.107 50.000 0.00 0.00 0.00 2.57
1525 2101 4.201910 ACACCACGTTCATTTCAGTTCTTG 60.202 41.667 0.00 0.00 0.00 3.02
1526 2102 3.243068 ACCACGTTCATTTCAGTTCTTGC 60.243 43.478 0.00 0.00 0.00 4.01
1528 2104 4.498009 CCACGTTCATTTCAGTTCTTGCTT 60.498 41.667 0.00 0.00 0.00 3.91
1530 2106 3.902465 CGTTCATTTCAGTTCTTGCTTCG 59.098 43.478 0.00 0.00 0.00 3.79
1531 2107 3.542712 TCATTTCAGTTCTTGCTTCGC 57.457 42.857 0.00 0.00 0.00 4.70
1534 2110 0.531974 TTCAGTTCTTGCTTCGCCGT 60.532 50.000 0.00 0.00 0.00 5.68
1535 2111 0.944311 TCAGTTCTTGCTTCGCCGTC 60.944 55.000 0.00 0.00 0.00 4.79
1536 2112 1.668151 AGTTCTTGCTTCGCCGTCC 60.668 57.895 0.00 0.00 0.00 4.79
1537 2113 2.736995 TTCTTGCTTCGCCGTCCG 60.737 61.111 0.00 0.00 38.61 4.79
1538 2114 3.509137 TTCTTGCTTCGCCGTCCGT 62.509 57.895 0.00 0.00 38.35 4.69
1587 2171 0.606401 GTGTGGTGTGGTGGATCTGG 60.606 60.000 0.00 0.00 0.00 3.86
1791 2379 4.948608 TGTTTGCTTAAAGACGAACACA 57.051 36.364 0.00 0.00 35.69 3.72
1794 2382 4.481930 TTGCTTAAAGACGAACACATGG 57.518 40.909 0.00 0.00 0.00 3.66
1842 2436 3.618698 GTCTCCAAGCTCGTTTTGTTTC 58.381 45.455 0.00 0.00 0.00 2.78
1846 2440 3.115554 CCAAGCTCGTTTTGTTTCTTGG 58.884 45.455 4.68 4.68 42.82 3.61
1848 2442 3.420839 AGCTCGTTTTGTTTCTTGGTG 57.579 42.857 0.00 0.00 0.00 4.17
1861 2474 0.976641 CTTGGTGTGGAGAGTGGCTA 59.023 55.000 0.00 0.00 0.00 3.93
1867 2480 1.902508 TGTGGAGAGTGGCTAAAGAGG 59.097 52.381 0.00 0.00 0.00 3.69
1873 2486 0.036875 AGTGGCTAAAGAGGGTGTGC 59.963 55.000 0.00 0.00 0.00 4.57
1874 2487 0.960861 GTGGCTAAAGAGGGTGTGCC 60.961 60.000 0.00 0.00 40.62 5.01
1875 2488 1.745489 GGCTAAAGAGGGTGTGCCG 60.745 63.158 0.00 0.00 34.97 5.69
1876 2489 1.003718 GCTAAAGAGGGTGTGCCGT 60.004 57.895 0.00 0.00 34.97 5.68
1877 2490 1.298859 GCTAAAGAGGGTGTGCCGTG 61.299 60.000 0.00 0.00 34.97 4.94
1878 2491 0.034896 CTAAAGAGGGTGTGCCGTGT 59.965 55.000 0.00 0.00 34.97 4.49
1879 2492 0.470766 TAAAGAGGGTGTGCCGTGTT 59.529 50.000 0.00 0.00 37.68 3.32
1880 2493 0.818040 AAAGAGGGTGTGCCGTGTTC 60.818 55.000 0.00 0.00 35.47 3.18
2151 2770 5.234329 CGAAAGTGACAACTCAATACAGTGT 59.766 40.000 0.00 0.00 34.77 3.55
2154 2773 5.918608 AGTGACAACTCAATACAGTGTCTT 58.081 37.500 0.00 0.00 31.26 3.01
2167 2786 8.615211 CAATACAGTGTCTTACATGCATGTATT 58.385 33.333 33.93 21.35 42.32 1.89
2188 2807 1.639534 GCGTACACTGCAACGTGTT 59.360 52.632 15.93 2.60 45.27 3.32
2191 2810 2.098120 CGTACACTGCAACGTGTTTTG 58.902 47.619 15.93 4.39 45.27 2.44
2193 2812 1.975837 ACACTGCAACGTGTTTTGTG 58.024 45.000 5.94 0.98 45.27 3.33
2206 2827 6.255215 ACGTGTTTTGTGTACTGAAAGAATG 58.745 36.000 0.00 0.00 37.43 2.67
2286 2911 1.195448 GTTGATGGTGTGAAGCACTCG 59.805 52.381 0.00 0.00 46.86 4.18
2369 2994 3.074412 GCCATGCAGTTACTGTGTAAGT 58.926 45.455 14.23 0.00 43.40 2.24
2370 2995 3.502211 GCCATGCAGTTACTGTGTAAGTT 59.498 43.478 14.23 0.00 40.56 2.66
2371 2996 4.023193 GCCATGCAGTTACTGTGTAAGTTT 60.023 41.667 14.23 0.00 40.56 2.66
2372 2997 5.507315 GCCATGCAGTTACTGTGTAAGTTTT 60.507 40.000 14.23 0.00 40.56 2.43
2375 3000 6.995511 TGCAGTTACTGTGTAAGTTTTCTT 57.004 33.333 14.23 0.00 40.56 2.52
2376 3001 7.385778 TGCAGTTACTGTGTAAGTTTTCTTT 57.614 32.000 14.23 0.00 40.56 2.52
2377 3002 7.822658 TGCAGTTACTGTGTAAGTTTTCTTTT 58.177 30.769 14.23 0.00 40.56 2.27
2378 3003 8.301002 TGCAGTTACTGTGTAAGTTTTCTTTTT 58.699 29.630 14.23 0.00 40.56 1.94
2431 3079 2.627839 AAAACCCCGCCCTTTCGTCA 62.628 55.000 0.00 0.00 0.00 4.35
2436 3084 0.170339 CCCGCCCTTTCGTCAATTTC 59.830 55.000 0.00 0.00 0.00 2.17
2437 3085 0.878416 CCGCCCTTTCGTCAATTTCA 59.122 50.000 0.00 0.00 0.00 2.69
2438 3086 1.268352 CCGCCCTTTCGTCAATTTCAA 59.732 47.619 0.00 0.00 0.00 2.69
2440 3088 3.574614 CGCCCTTTCGTCAATTTCAATT 58.425 40.909 0.00 0.00 0.00 2.32
2443 3132 5.060446 CGCCCTTTCGTCAATTTCAATTTAC 59.940 40.000 0.00 0.00 0.00 2.01
2612 3338 0.317020 GCTCCGCCAATATTTCGTGC 60.317 55.000 6.24 6.35 0.00 5.34
2654 3387 4.154347 CGAGCCCACTCTCTGCCC 62.154 72.222 0.00 0.00 41.09 5.36
2712 3450 0.323302 TGGCCGTTGCTGAATAGACA 59.677 50.000 0.00 0.00 37.74 3.41
2855 4018 2.172483 GAAGGCACCCTGAAGCTCGA 62.172 60.000 0.00 0.00 32.13 4.04
2856 4019 1.557269 AAGGCACCCTGAAGCTCGAT 61.557 55.000 0.00 0.00 32.13 3.59
2857 4020 1.522580 GGCACCCTGAAGCTCGATC 60.523 63.158 0.00 0.00 0.00 3.69
2858 4021 1.880340 GCACCCTGAAGCTCGATCG 60.880 63.158 9.36 9.36 0.00 3.69
2859 4022 1.513158 CACCCTGAAGCTCGATCGT 59.487 57.895 15.94 0.00 0.00 3.73
2864 4027 1.268794 CCTGAAGCTCGATCGTGTAGG 60.269 57.143 15.94 14.24 0.00 3.18
2865 4028 1.402259 CTGAAGCTCGATCGTGTAGGT 59.598 52.381 15.94 8.11 0.00 3.08
2866 4029 2.612672 CTGAAGCTCGATCGTGTAGGTA 59.387 50.000 15.94 0.00 0.00 3.08
2867 4030 2.353889 TGAAGCTCGATCGTGTAGGTAC 59.646 50.000 15.94 0.00 0.00 3.34
2869 4032 2.362736 AGCTCGATCGTGTAGGTACAA 58.637 47.619 15.94 0.00 38.04 2.41
2870 4033 2.355132 AGCTCGATCGTGTAGGTACAAG 59.645 50.000 15.94 1.80 38.04 3.16
2871 4034 2.717530 CTCGATCGTGTAGGTACAAGC 58.282 52.381 15.94 0.00 38.04 4.01
2936 4103 1.136690 CTTCGCAGCAAACTCGTACA 58.863 50.000 0.00 0.00 0.00 2.90
3091 6094 2.959465 ACAGTCAAAGGGAAAGGAGG 57.041 50.000 0.00 0.00 0.00 4.30
3230 6233 1.121407 ACTCTGTAGCCTGCACCACA 61.121 55.000 0.00 0.00 0.00 4.17
3232 6235 1.672356 CTGTAGCCTGCACCACACC 60.672 63.158 0.00 0.00 0.00 4.16
3343 6413 0.892755 TCGGCCGTCTGTCTAATGTT 59.107 50.000 27.15 0.00 0.00 2.71
3347 6417 3.737047 CGGCCGTCTGTCTAATGTTATGT 60.737 47.826 19.50 0.00 0.00 2.29
3348 6418 4.189231 GGCCGTCTGTCTAATGTTATGTT 58.811 43.478 0.00 0.00 0.00 2.71
3350 6420 5.123344 GGCCGTCTGTCTAATGTTATGTTTT 59.877 40.000 0.00 0.00 0.00 2.43
3351 6421 6.349033 GGCCGTCTGTCTAATGTTATGTTTTT 60.349 38.462 0.00 0.00 0.00 1.94
3375 6445 5.968528 TTTTTGCGGGTGTCTAATGTTAT 57.031 34.783 0.00 0.00 0.00 1.89
3377 6447 3.620427 TGCGGGTGTCTAATGTTATGT 57.380 42.857 0.00 0.00 0.00 2.29
3401 7996 0.320683 TCAGCTGTGTATGCAAGCGT 60.321 50.000 14.67 0.00 0.00 5.07
3963 8629 7.255451 CCCATTTTACTGTCTTTTCAAGTGCTA 60.255 37.037 0.00 0.00 0.00 3.49
3964 8630 7.805071 CCATTTTACTGTCTTTTCAAGTGCTAG 59.195 37.037 0.00 0.00 0.00 3.42
3980 8646 2.352651 TGCTAGTAGTACGCACTAACCG 59.647 50.000 0.00 2.97 38.98 4.44
4064 8731 1.065031 CGTTTGCATTGCACGCCTAC 61.065 55.000 11.66 4.21 38.71 3.18
4143 8813 3.905678 CGCCCAGCTAGGTCCTCG 61.906 72.222 0.00 0.00 34.66 4.63
4158 8828 3.315749 GGTCCTCGTTAGATGTCACCTAG 59.684 52.174 0.00 0.00 0.00 3.02
4182 8852 1.205064 CAGCAGCACGACTTTTCCG 59.795 57.895 0.00 0.00 0.00 4.30
4204 8874 1.692519 AGACCGGCTAGTTTGAGTGTT 59.307 47.619 0.00 0.00 0.00 3.32
4205 8875 2.895404 AGACCGGCTAGTTTGAGTGTTA 59.105 45.455 0.00 0.00 0.00 2.41
4206 8876 3.056749 AGACCGGCTAGTTTGAGTGTTAG 60.057 47.826 0.00 0.00 0.00 2.34
4207 8877 2.000447 CCGGCTAGTTTGAGTGTTAGC 59.000 52.381 0.00 0.00 38.19 3.09
5319 10029 2.159572 CGGTTAGCACTGTATTTGCACC 60.160 50.000 0.00 0.00 42.83 5.01
5452 10162 6.041182 AGCTATGGCAATGATTAAGCATGAAA 59.959 34.615 7.03 0.00 41.70 2.69
5457 10167 6.979817 TGGCAATGATTAAGCATGAAACATAC 59.020 34.615 7.03 0.00 0.00 2.39
5458 10168 7.147863 TGGCAATGATTAAGCATGAAACATACT 60.148 33.333 7.03 0.00 0.00 2.12
5459 10169 7.380602 GGCAATGATTAAGCATGAAACATACTC 59.619 37.037 7.03 0.00 0.00 2.59
5460 10170 7.380602 GCAATGATTAAGCATGAAACATACTCC 59.619 37.037 7.03 0.00 0.00 3.85
5461 10171 8.407832 CAATGATTAAGCATGAAACATACTCCA 58.592 33.333 7.03 0.00 0.00 3.86
5462 10172 7.558161 TGATTAAGCATGAAACATACTCCAG 57.442 36.000 0.00 0.00 0.00 3.86
5463 10173 7.337938 TGATTAAGCATGAAACATACTCCAGA 58.662 34.615 0.00 0.00 0.00 3.86
5464 10174 7.496920 TGATTAAGCATGAAACATACTCCAGAG 59.503 37.037 0.00 0.00 0.00 3.35
5465 10175 4.148128 AGCATGAAACATACTCCAGAGG 57.852 45.455 0.00 0.00 0.00 3.69
5466 10176 3.521126 AGCATGAAACATACTCCAGAGGT 59.479 43.478 0.00 0.00 0.00 3.85
5467 10177 4.018960 AGCATGAAACATACTCCAGAGGTT 60.019 41.667 0.00 0.00 0.00 3.50
5468 10178 5.189736 AGCATGAAACATACTCCAGAGGTTA 59.810 40.000 0.00 0.00 0.00 2.85
5469 10179 5.525378 GCATGAAACATACTCCAGAGGTTAG 59.475 44.000 0.00 0.00 0.00 2.34
5470 10180 5.086104 TGAAACATACTCCAGAGGTTAGC 57.914 43.478 0.00 0.00 0.00 3.09
5471 10181 4.081087 TGAAACATACTCCAGAGGTTAGCC 60.081 45.833 0.00 0.00 0.00 3.93
5472 10182 2.399580 ACATACTCCAGAGGTTAGCCC 58.600 52.381 0.00 0.00 34.57 5.19
5473 10183 1.694696 CATACTCCAGAGGTTAGCCCC 59.305 57.143 0.00 0.00 34.57 5.80
5474 10184 0.714180 TACTCCAGAGGTTAGCCCCA 59.286 55.000 0.00 0.00 34.57 4.96
5475 10185 0.618968 ACTCCAGAGGTTAGCCCCAG 60.619 60.000 0.00 0.00 34.57 4.45
5476 10186 0.325671 CTCCAGAGGTTAGCCCCAGA 60.326 60.000 0.00 0.00 34.57 3.86
5477 10187 0.118346 TCCAGAGGTTAGCCCCAGAA 59.882 55.000 0.00 0.00 34.57 3.02
5478 10188 0.543749 CCAGAGGTTAGCCCCAGAAG 59.456 60.000 0.00 0.00 34.57 2.85
5537 10247 3.937814 TGAGTTGTCAGTGTCAAAGTGT 58.062 40.909 4.32 0.00 0.00 3.55
5538 10248 4.323417 TGAGTTGTCAGTGTCAAAGTGTT 58.677 39.130 4.32 0.00 0.00 3.32
5564 10274 2.750237 GCCAACGGTTAGCCCCAG 60.750 66.667 0.00 0.00 0.00 4.45
5567 10277 1.078426 CAACGGTTAGCCCCAGAGG 60.078 63.158 0.00 0.00 39.47 3.69
5577 10287 2.503061 CCCAGAGGTGATGCTCCG 59.497 66.667 0.00 0.00 0.00 4.63
5624 10334 2.223572 CGTGGATCAAAAGCTAATGCCC 60.224 50.000 0.00 0.00 40.80 5.36
5650 10360 0.605083 TGTCAGTGTAGCCTGCAGAG 59.395 55.000 17.39 6.56 32.32 3.35
5703 10426 0.892063 AGAGAGAAAGAGTGGTCCGC 59.108 55.000 0.00 0.00 0.00 5.54
5704 10427 0.456995 GAGAGAAAGAGTGGTCCGCG 60.457 60.000 0.00 0.00 0.00 6.46
5706 10429 0.319641 GAGAAAGAGTGGTCCGCGTT 60.320 55.000 4.92 0.00 0.00 4.84
5709 10432 0.600255 AAAGAGTGGTCCGCGTTCAG 60.600 55.000 4.92 0.00 0.00 3.02
5731 10454 3.909662 AGCGTGAATGCCATGGTC 58.090 55.556 14.67 6.41 37.99 4.02
5843 10569 3.057526 CCCACCGGATTCTTGAGAAAAAC 60.058 47.826 9.46 0.00 37.61 2.43
5949 10675 2.224646 GGCTATGGATCTGGGAAGGAAC 60.225 54.545 0.00 0.00 0.00 3.62
5963 10689 1.173043 AGGAACGAGAGAGTCAGCAG 58.827 55.000 0.00 0.00 0.00 4.24
5982 10708 1.734388 GCGTGGTGGCCTGAAAACTT 61.734 55.000 3.32 0.00 0.00 2.66
6002 10728 2.060383 CCCAGGAGCACATCTCGGA 61.060 63.158 0.00 0.00 42.82 4.55
6012 10747 3.139810 CATCTCGGAGGAGGTGGAT 57.860 57.895 4.96 0.00 45.82 3.41
6106 10841 0.970937 TGAGTGGGTCCCATCGAGAC 60.971 60.000 15.49 0.00 35.28 3.36
6123 10858 3.991773 CGAGACGGTGGTTTCAGATTTAA 59.008 43.478 0.00 0.00 0.00 1.52
6180 10915 4.100498 GTCCCTTTGATTCCTACGTGGATA 59.900 45.833 0.00 0.00 45.68 2.59
6183 10918 4.442893 CCTTTGATTCCTACGTGGATAGCA 60.443 45.833 0.00 2.52 45.68 3.49
6184 10919 4.955811 TTGATTCCTACGTGGATAGCAT 57.044 40.909 0.00 0.00 45.68 3.79
6185 10920 4.257267 TGATTCCTACGTGGATAGCATG 57.743 45.455 0.00 0.00 45.68 4.06
6186 10921 2.526304 TTCCTACGTGGATAGCATGC 57.474 50.000 10.51 10.51 45.68 4.06
6229 10964 2.358721 CCCCCATTGTACATGCCCTTAA 60.359 50.000 0.00 0.00 0.00 1.85
6326 11064 2.289133 TGCGTGTCAGTGGTGCTATAAA 60.289 45.455 0.00 0.00 0.00 1.40
6327 11065 2.936498 GCGTGTCAGTGGTGCTATAAAT 59.064 45.455 0.00 0.00 0.00 1.40
6328 11066 3.242413 GCGTGTCAGTGGTGCTATAAATG 60.242 47.826 0.00 0.00 0.00 2.32
6329 11067 3.932710 CGTGTCAGTGGTGCTATAAATGT 59.067 43.478 0.00 0.00 0.00 2.71
6350 11146 4.574828 TGTGGTAAGAACTCTGTTTTGCTC 59.425 41.667 0.00 0.00 0.00 4.26
6378 11186 6.726230 CCTAATGAATTCTTGACATGCAGAG 58.274 40.000 7.05 0.00 0.00 3.35
6388 11196 4.393155 ATGCAGAGCGCCGTGGAA 62.393 61.111 2.29 0.00 41.33 3.53
6614 11422 3.050275 GCCTCCACAACCTGACGC 61.050 66.667 0.00 0.00 0.00 5.19
6715 11526 2.456287 GAAGCCTCCGAGGTTGCTGT 62.456 60.000 16.09 0.00 37.80 4.40
6731 11542 3.165875 TGCTGTTCTGGTTAGCTCTAGT 58.834 45.455 0.00 0.00 38.25 2.57
6732 11543 3.578716 TGCTGTTCTGGTTAGCTCTAGTT 59.421 43.478 0.00 0.00 38.25 2.24
6733 11544 4.770531 TGCTGTTCTGGTTAGCTCTAGTTA 59.229 41.667 0.00 0.00 38.25 2.24
6757 11569 2.498807 TTAGCGCTGCTACTGATCAG 57.501 50.000 22.90 21.37 41.12 2.90
6758 11570 1.393603 TAGCGCTGCTACTGATCAGT 58.606 50.000 30.11 30.11 45.02 3.41
6759 11571 0.102120 AGCGCTGCTACTGATCAGTC 59.898 55.000 31.09 18.42 42.54 3.51
6760 11572 0.102120 GCGCTGCTACTGATCAGTCT 59.898 55.000 31.09 11.35 42.54 3.24
6761 11573 1.335182 GCGCTGCTACTGATCAGTCTA 59.665 52.381 31.09 14.58 42.54 2.59
6780 11592 9.578576 TCAGTCTAGTAGTAAGAAAAACTACCA 57.421 33.333 9.21 0.00 46.91 3.25
6826 11638 7.433719 GCTGTTTCTTTTCTTCTTTTCTTCTCC 59.566 37.037 0.00 0.00 0.00 3.71
6841 11653 4.277476 TCTTCTCCTGGATTCAGAGAGAC 58.723 47.826 17.23 0.00 41.99 3.36
6867 11679 5.468072 GTGATGACTGATGTTTGTCTCTTGT 59.532 40.000 0.00 0.00 34.57 3.16
6868 11680 6.017605 GTGATGACTGATGTTTGTCTCTTGTT 60.018 38.462 0.00 0.00 34.57 2.83
6869 11681 5.991328 TGACTGATGTTTGTCTCTTGTTC 57.009 39.130 0.00 0.00 34.57 3.18
6870 11682 5.674525 TGACTGATGTTTGTCTCTTGTTCT 58.325 37.500 0.00 0.00 34.57 3.01
6871 11683 5.525012 TGACTGATGTTTGTCTCTTGTTCTG 59.475 40.000 0.00 0.00 34.57 3.02
6872 11684 5.431765 ACTGATGTTTGTCTCTTGTTCTGT 58.568 37.500 0.00 0.00 0.00 3.41
6873 11685 5.295292 ACTGATGTTTGTCTCTTGTTCTGTG 59.705 40.000 0.00 0.00 0.00 3.66
6883 11695 2.365293 TCTTGTTCTGTGCTCTGTGCTA 59.635 45.455 3.20 0.00 43.37 3.49
7186 11999 0.804989 GGAACATGAAGCACCCGAAG 59.195 55.000 0.00 0.00 0.00 3.79
7281 12094 3.118629 TGGATTGCTGGTCATGTAGACTC 60.119 47.826 0.00 0.00 46.72 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 0.743097 GTTAGCCACGACCCGATACT 59.257 55.000 0.00 0.00 0.00 2.12
53 55 3.263053 GTTAGCCACGACCCGATAC 57.737 57.895 0.00 0.00 0.00 2.24
79 81 0.530650 GCGGATCCAAGAGCATTCGA 60.531 55.000 13.41 0.00 0.00 3.71
189 193 2.098871 TCGTACGACGATGGTGCG 59.901 61.111 15.28 8.70 46.73 5.34
215 219 4.034858 ACGAACGAAGTGAATATCGAGCTA 59.965 41.667 0.14 0.00 45.00 3.32
278 282 2.586635 AAACTGTTGCGCCGTCGA 60.587 55.556 4.18 0.00 38.10 4.20
342 349 1.609072 CGGAGACACAGAGACTGAACA 59.391 52.381 5.76 0.00 35.18 3.18
345 352 1.244697 GCCGGAGACACAGAGACTGA 61.245 60.000 5.05 0.00 35.18 3.41
421 437 2.257207 CAAGACTAGGAGGTGGACCAA 58.743 52.381 0.00 0.00 38.89 3.67
487 506 0.784178 CGATGTATTGATCGGGTGCG 59.216 55.000 0.00 0.00 41.29 5.34
537 556 8.702163 ATATTAACGAAAATTGCTTTTGGAGG 57.298 30.769 0.00 0.00 34.73 4.30
549 568 8.911918 TGCATAGTGGGTATATTAACGAAAAT 57.088 30.769 0.00 0.00 0.00 1.82
563 582 3.737559 TGGAGAATTTGCATAGTGGGT 57.262 42.857 0.00 0.00 0.00 4.51
600 619 0.723981 GAACAGCATGCCGAGAAGAC 59.276 55.000 15.66 0.00 42.53 3.01
611 630 0.323178 CAGGGGAAGCAGAACAGCAT 60.323 55.000 0.00 0.00 36.85 3.79
630 649 3.740115 TGTGCTTCTAGGGAAAAGTGTC 58.260 45.455 0.00 0.00 0.00 3.67
673 692 2.230992 AGTGACTCAGTGAAGCAGCTAG 59.769 50.000 0.00 0.00 0.00 3.42
702 729 6.725834 AGAGAGAGAGAGAGGACAAAGAAAAT 59.274 38.462 0.00 0.00 0.00 1.82
716 743 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
717 744 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
720 747 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
721 748 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
722 749 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
744 971 4.983671 TGAGCTCTTTTCGCTACTGATA 57.016 40.909 16.19 0.00 37.96 2.15
748 975 2.497675 TCCATGAGCTCTTTTCGCTACT 59.502 45.455 16.19 0.00 37.96 2.57
813 1045 2.945668 AGGATGAATAAAGCACGAAGGC 59.054 45.455 0.00 0.00 0.00 4.35
913 1445 0.752376 GAGCGTGTAGTAGAGCCCCT 60.752 60.000 0.00 0.00 0.00 4.79
920 1452 2.030091 TCGTTGATCGAGCGTGTAGTAG 59.970 50.000 0.00 0.00 44.01 2.57
921 1453 2.001872 TCGTTGATCGAGCGTGTAGTA 58.998 47.619 0.00 0.00 44.01 1.82
923 1455 3.598678 TCGTTGATCGAGCGTGTAG 57.401 52.632 0.00 0.00 44.01 2.74
952 1487 5.881443 GTCTGCTAGTTCTTGAGGTAGACTA 59.119 44.000 0.00 0.00 36.94 2.59
1167 1712 1.228245 GCTCACCTGGTTGGAAGCA 60.228 57.895 0.00 0.00 42.99 3.91
1200 1745 5.335127 GCGTTAGATGTCAAGAAAATGCAT 58.665 37.500 0.00 0.00 0.00 3.96
1201 1746 4.379394 GGCGTTAGATGTCAAGAAAATGCA 60.379 41.667 0.00 0.00 31.97 3.96
1202 1747 4.098416 GGCGTTAGATGTCAAGAAAATGC 58.902 43.478 0.00 0.00 0.00 3.56
1203 1748 5.295431 TGGCGTTAGATGTCAAGAAAATG 57.705 39.130 0.00 0.00 0.00 2.32
1237 1813 5.623673 CGACAACACAAAGTAATTAAGCACC 59.376 40.000 0.00 0.00 0.00 5.01
1242 1818 4.319622 CCGGCGACAACACAAAGTAATTAA 60.320 41.667 9.30 0.00 0.00 1.40
1243 1819 3.186817 CCGGCGACAACACAAAGTAATTA 59.813 43.478 9.30 0.00 0.00 1.40
1244 1820 2.031508 CCGGCGACAACACAAAGTAATT 60.032 45.455 9.30 0.00 0.00 1.40
1245 1821 1.533731 CCGGCGACAACACAAAGTAAT 59.466 47.619 9.30 0.00 0.00 1.89
1281 1857 2.284921 CTGGGCCACCTGAGGAGA 60.285 66.667 4.99 0.00 37.89 3.71
1282 1858 3.406200 CCTGGGCCACCTGAGGAG 61.406 72.222 4.99 0.00 37.89 3.69
1283 1859 4.270153 ACCTGGGCCACCTGAGGA 62.270 66.667 15.11 0.00 37.89 3.71
1412 1988 0.960364 TGGTCCGGTACTCCACGTAC 60.960 60.000 0.00 0.00 46.22 3.67
1480 2056 1.227946 GGTCTCTCCCCTCGCTAGT 59.772 63.158 0.00 0.00 0.00 2.57
1489 2065 1.841556 TGGTGTGGTGGTCTCTCCC 60.842 63.158 0.00 0.00 34.77 4.30
1536 2112 4.332637 AACACGGACGGACGGACG 62.333 66.667 6.00 8.35 38.39 4.79
1537 2113 2.429739 GAACACGGACGGACGGAC 60.430 66.667 6.00 0.00 38.39 4.79
1538 2114 3.673484 GGAACACGGACGGACGGA 61.673 66.667 6.00 0.00 38.39 4.69
1587 2171 0.302890 CATCAGCGGCGATTTCAGTC 59.697 55.000 12.98 0.00 0.00 3.51
1737 2325 4.753610 ACTGATAATGATGAACGCTCATGG 59.246 41.667 5.94 0.00 42.60 3.66
1809 2403 3.192844 AGCTTGGAGACGATCGACTTTTA 59.807 43.478 24.34 8.54 0.00 1.52
1842 2436 0.976641 TAGCCACTCTCCACACCAAG 59.023 55.000 0.00 0.00 0.00 3.61
1846 2440 2.354203 CCTCTTTAGCCACTCTCCACAC 60.354 54.545 0.00 0.00 0.00 3.82
1848 2442 1.208293 CCCTCTTTAGCCACTCTCCAC 59.792 57.143 0.00 0.00 0.00 4.02
1861 2474 0.818040 GAACACGGCACACCCTCTTT 60.818 55.000 0.00 0.00 0.00 2.52
1867 2480 2.326550 CAACGAACACGGCACACC 59.673 61.111 0.00 0.00 0.00 4.16
1873 2486 1.654137 GTTGCTGCAACGAACACGG 60.654 57.895 27.40 0.00 34.63 4.94
1874 2487 0.316937 ATGTTGCTGCAACGAACACG 60.317 50.000 32.71 0.00 46.13 4.49
1875 2488 1.002468 AGATGTTGCTGCAACGAACAC 60.002 47.619 32.71 22.57 46.13 3.32
1876 2489 1.308047 AGATGTTGCTGCAACGAACA 58.692 45.000 32.71 21.14 46.13 3.18
1877 2490 2.480419 AGTAGATGTTGCTGCAACGAAC 59.520 45.455 32.71 26.40 46.13 3.95
1878 2491 2.766313 AGTAGATGTTGCTGCAACGAA 58.234 42.857 32.71 21.14 46.13 3.85
1879 2492 2.455674 AGTAGATGTTGCTGCAACGA 57.544 45.000 32.71 24.06 46.13 3.85
1880 2493 2.993220 TGTAGTAGATGTTGCTGCAACG 59.007 45.455 32.71 0.00 46.13 4.10
2151 2770 2.877786 CGCCCAATACATGCATGTAAGA 59.122 45.455 36.12 21.32 45.40 2.10
2154 2773 2.340210 ACGCCCAATACATGCATGTA 57.660 45.000 35.03 35.03 46.21 2.29
2167 2786 2.663520 CGTTGCAGTGTACGCCCA 60.664 61.111 1.98 0.00 0.00 5.36
2188 2807 7.120579 ACAAGTGTCATTCTTTCAGTACACAAA 59.879 33.333 0.00 0.00 39.66 2.83
2191 2810 6.422223 CACAAGTGTCATTCTTTCAGTACAC 58.578 40.000 0.00 0.00 37.96 2.90
2193 2812 5.237344 AGCACAAGTGTCATTCTTTCAGTAC 59.763 40.000 1.79 0.00 0.00 2.73
2206 2827 2.349817 CGAAATGGACAGCACAAGTGTC 60.350 50.000 1.79 0.00 43.12 3.67
2377 3002 9.005777 ACTTACACAGTAACTTCAGTTCAAAAA 57.994 29.630 0.00 0.00 39.31 1.94
2378 3003 8.556213 ACTTACACAGTAACTTCAGTTCAAAA 57.444 30.769 0.00 0.00 39.31 2.44
2379 3004 9.309516 CTACTTACACAGTAACTTCAGTTCAAA 57.690 33.333 0.00 0.00 37.54 2.69
2380 3005 7.437267 GCTACTTACACAGTAACTTCAGTTCAA 59.563 37.037 0.00 0.00 37.54 2.69
2382 3007 7.146648 AGCTACTTACACAGTAACTTCAGTTC 58.853 38.462 0.00 0.00 37.54 3.01
2383 3008 7.052142 AGCTACTTACACAGTAACTTCAGTT 57.948 36.000 0.00 0.00 37.54 3.16
2384 3009 6.651975 AGCTACTTACACAGTAACTTCAGT 57.348 37.500 0.00 0.00 37.54 3.41
2385 3010 8.080417 TGTTAGCTACTTACACAGTAACTTCAG 58.920 37.037 0.00 0.00 37.54 3.02
2386 3011 7.944061 TGTTAGCTACTTACACAGTAACTTCA 58.056 34.615 0.00 0.00 37.54 3.02
2387 3012 8.807667 TTGTTAGCTACTTACACAGTAACTTC 57.192 34.615 0.00 0.00 37.54 3.01
2388 3013 9.603921 TTTTGTTAGCTACTTACACAGTAACTT 57.396 29.630 0.00 0.00 37.54 2.66
2389 3014 9.603921 TTTTTGTTAGCTACTTACACAGTAACT 57.396 29.630 0.00 0.00 37.54 2.24
2390 3015 9.642312 GTTTTTGTTAGCTACTTACACAGTAAC 57.358 33.333 0.00 0.36 37.54 2.50
2391 3016 8.829612 GGTTTTTGTTAGCTACTTACACAGTAA 58.170 33.333 0.00 0.00 37.54 2.24
2392 3017 7.442062 GGGTTTTTGTTAGCTACTTACACAGTA 59.558 37.037 0.00 0.00 36.88 2.74
2393 3018 6.261603 GGGTTTTTGTTAGCTACTTACACAGT 59.738 38.462 0.00 0.00 39.87 3.55
2394 3019 6.293790 GGGGTTTTTGTTAGCTACTTACACAG 60.294 42.308 0.00 0.00 0.00 3.66
2395 3020 5.532032 GGGGTTTTTGTTAGCTACTTACACA 59.468 40.000 0.00 0.00 0.00 3.72
2396 3021 5.334337 CGGGGTTTTTGTTAGCTACTTACAC 60.334 44.000 0.00 0.00 0.00 2.90
2397 3022 4.756135 CGGGGTTTTTGTTAGCTACTTACA 59.244 41.667 0.00 0.00 0.00 2.41
2398 3023 4.378770 GCGGGGTTTTTGTTAGCTACTTAC 60.379 45.833 0.00 0.00 0.00 2.34
2399 3024 3.752747 GCGGGGTTTTTGTTAGCTACTTA 59.247 43.478 0.00 0.00 0.00 2.24
2400 3025 2.555325 GCGGGGTTTTTGTTAGCTACTT 59.445 45.455 0.00 0.00 0.00 2.24
2612 3338 1.592669 CTGCGCTCTCCCGGTAATG 60.593 63.158 9.73 0.00 0.00 1.90
2654 3387 1.144969 ACCGTTGCAGAATGTACACG 58.855 50.000 0.00 0.00 39.31 4.49
2685 3423 3.443045 GCAACGGCCATGTCTGGG 61.443 66.667 2.24 0.00 43.36 4.45
2712 3450 4.202346 TGGCTGGTAAACTTAAACTACGGT 60.202 41.667 0.00 0.00 0.00 4.83
2855 4018 3.955650 AGTTGCTTGTACCTACACGAT 57.044 42.857 0.00 0.00 35.64 3.73
2856 4019 3.822735 ACTAGTTGCTTGTACCTACACGA 59.177 43.478 0.00 0.00 35.64 4.35
2857 4020 3.918591 CACTAGTTGCTTGTACCTACACG 59.081 47.826 0.00 0.00 35.64 4.49
2858 4021 5.130292 TCACTAGTTGCTTGTACCTACAC 57.870 43.478 0.00 0.00 35.64 2.90
2859 4022 4.321750 GCTCACTAGTTGCTTGTACCTACA 60.322 45.833 9.64 0.00 0.00 2.74
2864 4027 2.917971 CTCGCTCACTAGTTGCTTGTAC 59.082 50.000 13.64 0.00 0.00 2.90
2865 4028 2.671351 GCTCGCTCACTAGTTGCTTGTA 60.671 50.000 13.64 0.00 0.00 2.41
2866 4029 1.937108 GCTCGCTCACTAGTTGCTTGT 60.937 52.381 13.64 0.00 0.00 3.16
2867 4030 0.718343 GCTCGCTCACTAGTTGCTTG 59.282 55.000 13.64 8.39 0.00 4.01
2869 4032 0.108898 CAGCTCGCTCACTAGTTGCT 60.109 55.000 13.64 5.58 0.00 3.91
2870 4033 0.109086 TCAGCTCGCTCACTAGTTGC 60.109 55.000 0.00 0.00 0.00 4.17
2871 4034 1.623359 GTCAGCTCGCTCACTAGTTG 58.377 55.000 0.00 0.00 0.00 3.16
2920 4083 0.859232 AACTGTACGAGTTTGCTGCG 59.141 50.000 0.00 0.00 42.70 5.18
2936 4103 3.516492 GCCATTAGCTGCGAAGGAAACT 61.516 50.000 8.69 0.00 40.40 2.66
3354 6424 4.762765 ACATAACATTAGACACCCGCAAAA 59.237 37.500 0.00 0.00 0.00 2.44
3355 6425 4.328536 ACATAACATTAGACACCCGCAAA 58.671 39.130 0.00 0.00 0.00 3.68
3356 6426 3.945346 ACATAACATTAGACACCCGCAA 58.055 40.909 0.00 0.00 0.00 4.85
3358 6428 5.583457 AGTTAACATAACATTAGACACCCGC 59.417 40.000 8.61 0.00 0.00 6.13
3361 6431 7.549488 AGCTGAGTTAACATAACATTAGACACC 59.451 37.037 8.61 0.00 0.00 4.16
3365 6435 8.094548 ACACAGCTGAGTTAACATAACATTAGA 58.905 33.333 23.35 0.00 0.00 2.10
3366 6436 8.256611 ACACAGCTGAGTTAACATAACATTAG 57.743 34.615 23.35 0.00 0.00 1.73
3367 6437 9.884636 ATACACAGCTGAGTTAACATAACATTA 57.115 29.630 23.35 0.00 0.00 1.90
3368 6438 8.668353 CATACACAGCTGAGTTAACATAACATT 58.332 33.333 23.35 0.00 0.00 2.71
3369 6439 7.201644 GCATACACAGCTGAGTTAACATAACAT 60.202 37.037 23.35 2.55 0.00 2.71
3370 6440 6.092122 GCATACACAGCTGAGTTAACATAACA 59.908 38.462 23.35 0.00 0.00 2.41
3371 6441 6.092122 TGCATACACAGCTGAGTTAACATAAC 59.908 38.462 23.35 5.54 0.00 1.89
3372 6442 6.169800 TGCATACACAGCTGAGTTAACATAA 58.830 36.000 23.35 1.47 0.00 1.90
3373 6443 5.729510 TGCATACACAGCTGAGTTAACATA 58.270 37.500 23.35 2.29 0.00 2.29
3374 6444 4.578871 TGCATACACAGCTGAGTTAACAT 58.421 39.130 23.35 6.07 0.00 2.71
3375 6445 4.001618 TGCATACACAGCTGAGTTAACA 57.998 40.909 23.35 13.89 0.00 2.41
3377 6447 3.436704 GCTTGCATACACAGCTGAGTTAA 59.563 43.478 23.35 4.79 31.38 2.01
3963 8629 3.503748 ACTTTCGGTTAGTGCGTACTACT 59.496 43.478 13.27 1.18 39.06 2.57
3964 8630 3.826466 ACTTTCGGTTAGTGCGTACTAC 58.174 45.455 13.27 8.49 39.06 2.73
4064 8731 1.927174 CTGCGAGATACCCAAAGAACG 59.073 52.381 0.00 0.00 0.00 3.95
4143 8813 5.578005 TGTGCTACTAGGTGACATCTAAC 57.422 43.478 0.00 0.00 0.00 2.34
4158 8828 0.946221 AAGTCGTGCTGCTGTGCTAC 60.946 55.000 0.00 0.00 0.00 3.58
4182 8852 0.896226 ACTCAAACTAGCCGGTCTCC 59.104 55.000 1.90 0.00 0.00 3.71
4204 8874 6.046593 CCGGTGTAATTGACTCTTTATGCTA 58.953 40.000 0.00 0.00 0.00 3.49
4205 8875 4.876107 CCGGTGTAATTGACTCTTTATGCT 59.124 41.667 0.00 0.00 0.00 3.79
4206 8876 4.634443 ACCGGTGTAATTGACTCTTTATGC 59.366 41.667 6.12 0.00 0.00 3.14
4207 8877 5.064707 CCACCGGTGTAATTGACTCTTTATG 59.935 44.000 31.80 7.45 0.00 1.90
5154 9860 2.631160 AAAAGACCATGTCCACGTGA 57.369 45.000 19.30 0.00 34.90 4.35
5259 9969 2.265739 CTGACTTGGCCGCTAGCA 59.734 61.111 16.45 0.00 46.50 3.49
5319 10029 0.679640 TGCAATAACTTGGCTCGGGG 60.680 55.000 0.00 0.00 32.72 5.73
5452 10162 2.399580 GGGCTAACCTCTGGAGTATGT 58.600 52.381 0.00 0.00 35.85 2.29
5457 10167 0.325671 TCTGGGGCTAACCTCTGGAG 60.326 60.000 0.00 0.00 37.32 3.86
5458 10168 0.118346 TTCTGGGGCTAACCTCTGGA 59.882 55.000 0.00 0.00 37.32 3.86
5459 10169 0.543749 CTTCTGGGGCTAACCTCTGG 59.456 60.000 0.00 0.00 37.32 3.86
5460 10170 1.280457 ACTTCTGGGGCTAACCTCTG 58.720 55.000 0.00 0.00 37.32 3.35
5461 10171 2.942604 TACTTCTGGGGCTAACCTCT 57.057 50.000 0.00 0.00 37.32 3.69
5462 10172 4.505324 AATTACTTCTGGGGCTAACCTC 57.495 45.455 0.00 0.00 40.03 3.85
5463 10173 5.037598 ACTAATTACTTCTGGGGCTAACCT 58.962 41.667 0.00 0.00 40.03 3.50
5464 10174 5.123936 CACTAATTACTTCTGGGGCTAACC 58.876 45.833 0.00 0.00 39.11 2.85
5465 10175 5.742063 ACACTAATTACTTCTGGGGCTAAC 58.258 41.667 0.00 0.00 0.00 2.34
5466 10176 5.724854 AGACACTAATTACTTCTGGGGCTAA 59.275 40.000 0.00 0.00 0.00 3.09
5467 10177 5.128827 CAGACACTAATTACTTCTGGGGCTA 59.871 44.000 5.73 0.00 31.78 3.93
5468 10178 4.080863 CAGACACTAATTACTTCTGGGGCT 60.081 45.833 5.73 0.00 31.78 5.19
5469 10179 4.192317 CAGACACTAATTACTTCTGGGGC 58.808 47.826 5.73 0.00 31.78 5.80
5470 10180 5.422214 ACAGACACTAATTACTTCTGGGG 57.578 43.478 13.82 0.00 38.42 4.96
5471 10181 7.036220 CAGTACAGACACTAATTACTTCTGGG 58.964 42.308 13.82 0.00 38.42 4.45
5472 10182 7.827701 TCAGTACAGACACTAATTACTTCTGG 58.172 38.462 13.82 2.11 38.42 3.86
5473 10183 9.130312 GTTCAGTACAGACACTAATTACTTCTG 57.870 37.037 0.00 9.97 39.72 3.02
5474 10184 8.021973 CGTTCAGTACAGACACTAATTACTTCT 58.978 37.037 0.00 0.00 0.00 2.85
5475 10185 7.806960 ACGTTCAGTACAGACACTAATTACTTC 59.193 37.037 0.00 0.00 0.00 3.01
5476 10186 7.594015 CACGTTCAGTACAGACACTAATTACTT 59.406 37.037 0.00 0.00 0.00 2.24
5477 10187 7.040892 TCACGTTCAGTACAGACACTAATTACT 60.041 37.037 0.00 0.00 0.00 2.24
5478 10188 7.080099 TCACGTTCAGTACAGACACTAATTAC 58.920 38.462 0.00 0.00 0.00 1.89
5624 10334 1.070758 AGGCTACACTGACACACTTGG 59.929 52.381 0.00 0.00 0.00 3.61
5703 10426 1.585668 CATTCACGCTCTAGCTGAACG 59.414 52.381 14.70 1.85 39.27 3.95
5704 10427 1.325943 GCATTCACGCTCTAGCTGAAC 59.674 52.381 14.70 4.94 39.27 3.18
5706 10429 0.179100 GGCATTCACGCTCTAGCTGA 60.179 55.000 0.00 0.82 39.32 4.26
5709 10432 0.585357 CATGGCATTCACGCTCTAGC 59.415 55.000 0.00 0.00 37.78 3.42
5717 10440 0.729116 CTGTCGACCATGGCATTCAC 59.271 55.000 13.04 2.22 0.00 3.18
5731 10454 2.202623 GAGGTAGTGCGGCTGTCG 60.203 66.667 0.00 0.00 42.76 4.35
5876 10602 4.222847 GCGGAGGGGGATGACGAC 62.223 72.222 0.00 0.00 0.00 4.34
5895 10621 0.107945 CCAGAGCAGTTCTAGGCCAC 60.108 60.000 5.01 0.00 33.83 5.01
5949 10675 1.513800 CACGCTGCTGACTCTCTCG 60.514 63.158 0.00 0.00 0.00 4.04
5963 10689 1.734388 AAGTTTTCAGGCCACCACGC 61.734 55.000 5.01 0.00 0.00 5.34
5982 10708 2.993008 GAGATGTGCTCCTGGGCA 59.007 61.111 5.85 5.85 37.69 5.36
6002 10728 2.044793 TCTTGTTCCATCCACCTCCT 57.955 50.000 0.00 0.00 0.00 3.69
6009 10744 3.134081 TCCGTTCCTATCTTGTTCCATCC 59.866 47.826 0.00 0.00 0.00 3.51
6012 10747 2.500098 CCTCCGTTCCTATCTTGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
6025 10760 3.741249 ACTTCCTTTTCTTCCTCCGTTC 58.259 45.455 0.00 0.00 0.00 3.95
6080 10815 2.879103 TGGGACCCACTCATTTTCTC 57.121 50.000 9.95 0.00 0.00 2.87
6106 10841 2.727916 GCGCTTAAATCTGAAACCACCG 60.728 50.000 0.00 0.00 0.00 4.94
6186 10921 4.753662 ACCTGCTGCTGCCCCATG 62.754 66.667 13.47 0.00 38.71 3.66
6261 10996 6.322712 ACTCTGTTCTTCTTTCTGACAGTACT 59.677 38.462 1.59 0.00 0.00 2.73
6262 10997 6.419413 CACTCTGTTCTTCTTTCTGACAGTAC 59.581 42.308 1.59 0.00 0.00 2.73
6326 11064 5.133221 AGCAAAACAGAGTTCTTACCACAT 58.867 37.500 0.00 0.00 0.00 3.21
6327 11065 4.523083 AGCAAAACAGAGTTCTTACCACA 58.477 39.130 0.00 0.00 0.00 4.17
6328 11066 4.816925 AGAGCAAAACAGAGTTCTTACCAC 59.183 41.667 0.00 0.00 0.00 4.16
6329 11067 4.816385 CAGAGCAAAACAGAGTTCTTACCA 59.184 41.667 0.00 0.00 0.00 3.25
6350 11146 5.735354 GCATGTCAAGAATTCATTAGGCCAG 60.735 44.000 5.01 0.00 0.00 4.85
6731 11542 7.151976 TGATCAGTAGCAGCGCTAATTAATAA 58.848 34.615 10.99 0.00 43.07 1.40
6732 11543 6.687604 TGATCAGTAGCAGCGCTAATTAATA 58.312 36.000 10.99 0.00 43.07 0.98
6733 11544 5.541845 TGATCAGTAGCAGCGCTAATTAAT 58.458 37.500 10.99 0.00 43.07 1.40
6760 11572 9.359653 ACTCACTGGTAGTTTTTCTTACTACTA 57.640 33.333 11.58 6.20 44.64 1.82
6761 11573 8.247666 ACTCACTGGTAGTTTTTCTTACTACT 57.752 34.615 11.58 0.00 44.64 2.57
6780 11592 0.323908 AAGCTCGCTCCCTACTCACT 60.324 55.000 0.00 0.00 0.00 3.41
6807 11619 7.757941 ATCCAGGAGAAGAAAAGAAGAAAAG 57.242 36.000 0.00 0.00 0.00 2.27
6826 11638 2.095461 TCACCGTCTCTCTGAATCCAG 58.905 52.381 0.00 0.00 41.74 3.86
6841 11653 3.329386 AGACAAACATCAGTCATCACCG 58.671 45.455 0.00 0.00 37.23 4.94
6873 11685 1.525535 CCAGGCCATAGCACAGAGC 60.526 63.158 5.01 0.00 42.56 4.09
6883 11695 3.650298 ATGCTTCACGCCAGGCCAT 62.650 57.895 5.01 0.00 38.05 4.40
7186 11999 1.322442 AAAGGTTGCTCTTGGTCAGC 58.678 50.000 0.00 0.00 37.40 4.26
7281 12094 5.965922 TGTCTACTGTGACAACATATCAGG 58.034 41.667 9.56 0.00 43.08 3.86
7326 12139 3.378742 CAGTTACTCTCCGAGCTACACAT 59.621 47.826 0.00 0.00 32.04 3.21
7386 12199 1.523032 TCGAGGCTGAGTATCGCGA 60.523 57.895 13.09 13.09 38.61 5.87
7542 12355 7.391554 CACCTCAATAATTCTTCTCCAAACTCA 59.608 37.037 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.