Multiple sequence alignment - TraesCS4D01G227100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G227100 chr4D 100.000 3947 0 0 1 3947 386368459 386372405 0.000000e+00 7289.0
1 TraesCS4D01G227100 chr4D 94.419 430 17 3 3192 3618 92197127 92196702 0.000000e+00 654.0
2 TraesCS4D01G227100 chr4B 96.596 2703 69 9 497 3188 473104511 473107201 0.000000e+00 4460.0
3 TraesCS4D01G227100 chr4B 92.165 485 30 6 24 506 473103780 473104258 0.000000e+00 678.0
4 TraesCS4D01G227100 chr4B 91.020 245 4 5 3618 3860 473107189 473107417 8.230000e-82 315.0
5 TraesCS4D01G227100 chr4A 95.626 2332 71 11 873 3188 67414756 67417072 0.000000e+00 3712.0
6 TraesCS4D01G227100 chr4A 91.779 815 43 10 24 835 67413967 67414760 0.000000e+00 1112.0
7 TraesCS4D01G227100 chr4A 93.878 147 9 0 3624 3770 67417105 67417251 5.130000e-54 222.0
8 TraesCS4D01G227100 chr4A 97.872 94 2 0 3767 3860 67417510 67417603 3.160000e-36 163.0
9 TraesCS4D01G227100 chrUn 94.582 443 10 8 3181 3618 325241735 325242168 0.000000e+00 673.0
10 TraesCS4D01G227100 chr1A 94.907 432 14 5 3192 3618 236296398 236296826 0.000000e+00 669.0
11 TraesCS4D01G227100 chr2B 94.521 438 15 5 3188 3618 216957828 216957393 0.000000e+00 667.0
12 TraesCS4D01G227100 chr2B 94.432 431 17 4 3193 3618 214324635 214325063 0.000000e+00 656.0
13 TraesCS4D01G227100 chr5A 94.292 438 19 4 3185 3618 656861203 656860768 0.000000e+00 665.0
14 TraesCS4D01G227100 chr5D 94.213 432 19 3 3192 3618 494697852 494697422 0.000000e+00 654.0
15 TraesCS4D01G227100 chr5D 94.266 436 12 5 3192 3618 533240889 533240458 0.000000e+00 654.0
16 TraesCS4D01G227100 chr7A 94.037 436 14 5 3193 3618 589834431 589834864 0.000000e+00 651.0
17 TraesCS4D01G227100 chr7A 75.904 166 38 2 1432 1596 285057153 285057317 2.530000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G227100 chr4D 386368459 386372405 3946 False 7289.000000 7289 100.000000 1 3947 1 chr4D.!!$F1 3946
1 TraesCS4D01G227100 chr4B 473103780 473107417 3637 False 1817.666667 4460 93.260333 24 3860 3 chr4B.!!$F1 3836
2 TraesCS4D01G227100 chr4A 67413967 67417603 3636 False 1302.250000 3712 94.788750 24 3860 4 chr4A.!!$F1 3836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1230 0.039617 TTTGTCCTGCGCGATTTTGG 60.040 50.000 12.1 3.38 0.00 3.28 F
955 1235 0.171007 CCTGCGCGATTTTGGTGAAT 59.829 50.000 12.1 0.00 0.00 2.57 F
968 1248 1.271543 TGGTGAATCTTCTGCTGGTGG 60.272 52.381 0.0 0.00 0.00 4.61 F
1110 1390 3.123620 GAGTGCAAGGAGCTGCGG 61.124 66.667 0.0 0.00 45.74 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2334 0.518636 CATCTGGTTGTTGCGTCCAG 59.481 55.000 4.30 4.3 46.94 3.86 R
2412 2698 2.796651 GAGCTGGGCTTGAATGCG 59.203 61.111 0.00 0.0 39.88 4.73 R
2911 3197 3.230134 CCCTGGACTGGAAGAGATCTAG 58.770 54.545 0.00 0.0 42.10 2.43 R
2964 3256 7.467623 CAAATATACTTCAGTGCAGGAAGAAC 58.532 38.462 26.49 0.0 43.46 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.820284 GAGTTGCTGTTATATCCCAAGC 57.180 45.455 0.00 0.00 0.00 4.01
22 23 3.206150 AGTTGCTGTTATATCCCAAGCG 58.794 45.455 0.00 0.00 0.00 4.68
49 50 2.564504 GGGGAAAGAAGATGCTGCTTTT 59.435 45.455 0.00 0.00 39.25 2.27
50 51 3.367806 GGGGAAAGAAGATGCTGCTTTTC 60.368 47.826 0.00 0.26 39.25 2.29
56 57 3.442977 AGAAGATGCTGCTTTTCATGGTC 59.557 43.478 0.00 0.00 0.00 4.02
59 60 0.890542 TGCTGCTTTTCATGGTCGCT 60.891 50.000 0.00 0.00 0.00 4.93
62 63 1.741706 CTGCTTTTCATGGTCGCTCAT 59.258 47.619 0.00 0.00 0.00 2.90
75 76 1.066152 TCGCTCATGAATGTCTCTCCG 59.934 52.381 0.00 0.00 0.00 4.63
162 164 2.369394 GGTGGGGAGAATAACTTGCTG 58.631 52.381 0.00 0.00 0.00 4.41
180 184 2.344950 CTGCTCCATAGATCGCAATCC 58.655 52.381 0.00 0.00 31.78 3.01
196 200 3.507233 GCAATCCATCACAGAACCAAAGA 59.493 43.478 0.00 0.00 0.00 2.52
199 203 3.476552 TCCATCACAGAACCAAAGACAC 58.523 45.455 0.00 0.00 0.00 3.67
232 237 6.035217 CCATCATTGCACACAATTCGATTTA 58.965 36.000 0.00 0.00 44.21 1.40
407 413 5.617528 TGCCCGAGTTATTTTATGACCTA 57.382 39.130 0.00 0.00 0.00 3.08
409 415 5.129815 TGCCCGAGTTATTTTATGACCTAGT 59.870 40.000 0.00 0.00 0.00 2.57
413 419 7.551617 CCCGAGTTATTTTATGACCTAGTGTTT 59.448 37.037 0.00 0.00 0.00 2.83
414 420 8.943002 CCGAGTTATTTTATGACCTAGTGTTTT 58.057 33.333 0.00 0.00 0.00 2.43
419 425 5.586155 TTTATGACCTAGTGTTTTGGGGA 57.414 39.130 0.00 0.00 0.00 4.81
483 489 4.811557 GGATGGAATCGGTAGAGAAAACTG 59.188 45.833 0.00 0.00 46.86 3.16
544 812 3.598019 AGTTCGACGGCCATAAACTAA 57.402 42.857 2.24 0.00 0.00 2.24
545 813 3.929094 AGTTCGACGGCCATAAACTAAA 58.071 40.909 2.24 0.00 0.00 1.85
742 1010 3.553828 TTCAAACAGACGGAAGAAGGT 57.446 42.857 0.00 0.00 0.00 3.50
933 1213 2.668144 TCCGGGGATTCAAACAGTTT 57.332 45.000 0.00 0.00 0.00 2.66
940 1220 3.552890 GGGATTCAAACAGTTTGTCCTGC 60.553 47.826 24.63 16.28 41.36 4.85
943 1223 0.929824 CAAACAGTTTGTCCTGCGCG 60.930 55.000 16.77 0.00 35.83 6.86
950 1230 0.039617 TTTGTCCTGCGCGATTTTGG 60.040 50.000 12.10 3.38 0.00 3.28
952 1232 1.154225 GTCCTGCGCGATTTTGGTG 60.154 57.895 12.10 0.00 0.00 4.17
954 1234 0.886938 TCCTGCGCGATTTTGGTGAA 60.887 50.000 12.10 0.00 0.00 3.18
955 1235 0.171007 CCTGCGCGATTTTGGTGAAT 59.829 50.000 12.10 0.00 0.00 2.57
956 1236 1.538276 CTGCGCGATTTTGGTGAATC 58.462 50.000 12.10 0.00 33.64 2.52
958 1238 1.539388 TGCGCGATTTTGGTGAATCTT 59.461 42.857 12.10 0.00 34.58 2.40
959 1239 2.177173 GCGCGATTTTGGTGAATCTTC 58.823 47.619 12.10 0.00 34.58 2.87
960 1240 2.159517 GCGCGATTTTGGTGAATCTTCT 60.160 45.455 12.10 0.00 34.58 2.85
961 1241 3.419915 CGCGATTTTGGTGAATCTTCTG 58.580 45.455 0.00 0.00 34.58 3.02
963 1243 3.119708 GCGATTTTGGTGAATCTTCTGCT 60.120 43.478 0.00 0.00 34.58 4.24
964 1244 4.409570 CGATTTTGGTGAATCTTCTGCTG 58.590 43.478 0.00 0.00 34.58 4.41
965 1245 4.673580 CGATTTTGGTGAATCTTCTGCTGG 60.674 45.833 0.00 0.00 34.58 4.85
966 1246 2.957402 TTGGTGAATCTTCTGCTGGT 57.043 45.000 0.00 0.00 0.00 4.00
967 1247 2.189594 TGGTGAATCTTCTGCTGGTG 57.810 50.000 0.00 0.00 0.00 4.17
968 1248 1.271543 TGGTGAATCTTCTGCTGGTGG 60.272 52.381 0.00 0.00 0.00 4.61
1110 1390 3.123620 GAGTGCAAGGAGCTGCGG 61.124 66.667 0.00 0.00 45.74 5.69
2547 2833 3.414700 CTGTCGCGCACCTTCACC 61.415 66.667 8.75 0.00 0.00 4.02
2559 2845 4.415332 TTCACCGCGAGCGAGACC 62.415 66.667 19.72 0.00 42.83 3.85
2964 3256 2.775911 AGGTGACACTGTGATGATGG 57.224 50.000 15.86 0.00 0.00 3.51
2991 3283 5.102953 TCCTGCACTGAAGTATATTTGCT 57.897 39.130 0.00 0.00 0.00 3.91
3111 3405 3.861840 ACATGTACATGCAGTGTAGACC 58.138 45.455 31.19 1.07 43.70 3.85
3181 3475 1.194781 TGGAGAAGGGAGTGCCTGTC 61.195 60.000 2.92 4.24 0.00 3.51
3188 3482 0.251341 GGGAGTGCCTGTCCAAATGT 60.251 55.000 0.00 0.00 35.57 2.71
3189 3483 1.620822 GGAGTGCCTGTCCAAATGTT 58.379 50.000 0.00 0.00 33.84 2.71
3192 3486 3.763897 GGAGTGCCTGTCCAAATGTTATT 59.236 43.478 0.00 0.00 33.84 1.40
3193 3487 4.220602 GGAGTGCCTGTCCAAATGTTATTT 59.779 41.667 0.00 0.00 33.84 1.40
3195 3489 6.173427 AGTGCCTGTCCAAATGTTATTTTT 57.827 33.333 0.00 0.00 0.00 1.94
3237 3531 7.930513 TTTATTGACTCATACAGTAGCATCG 57.069 36.000 0.00 0.00 34.41 3.84
3238 3532 5.774498 ATTGACTCATACAGTAGCATCGA 57.226 39.130 0.00 0.00 34.41 3.59
3239 3533 4.820284 TGACTCATACAGTAGCATCGAG 57.180 45.455 0.00 0.00 34.41 4.04
3240 3534 3.565902 TGACTCATACAGTAGCATCGAGG 59.434 47.826 0.00 0.00 34.41 4.63
3241 3535 2.887783 ACTCATACAGTAGCATCGAGGG 59.112 50.000 0.00 0.00 31.37 4.30
3242 3536 3.149981 CTCATACAGTAGCATCGAGGGA 58.850 50.000 0.00 0.00 0.00 4.20
3243 3537 3.761218 CTCATACAGTAGCATCGAGGGAT 59.239 47.826 0.00 0.00 0.00 3.85
3244 3538 4.918588 TCATACAGTAGCATCGAGGGATA 58.081 43.478 0.00 0.00 0.00 2.59
3245 3539 4.700692 TCATACAGTAGCATCGAGGGATAC 59.299 45.833 0.00 3.14 0.00 2.24
3246 3540 2.945456 ACAGTAGCATCGAGGGATACA 58.055 47.619 15.02 0.00 39.74 2.29
3247 3541 3.296854 ACAGTAGCATCGAGGGATACAA 58.703 45.455 15.02 0.00 39.74 2.41
3248 3542 3.898123 ACAGTAGCATCGAGGGATACAAT 59.102 43.478 15.02 2.98 39.74 2.71
3249 3543 4.021894 ACAGTAGCATCGAGGGATACAATC 60.022 45.833 15.02 0.00 39.74 2.67
3250 3544 4.021981 CAGTAGCATCGAGGGATACAATCA 60.022 45.833 15.02 0.00 39.74 2.57
3251 3545 4.774726 AGTAGCATCGAGGGATACAATCAT 59.225 41.667 15.02 0.00 39.74 2.45
3252 3546 3.935315 AGCATCGAGGGATACAATCATG 58.065 45.455 0.00 0.00 39.74 3.07
3253 3547 3.580022 AGCATCGAGGGATACAATCATGA 59.420 43.478 0.00 0.00 39.74 3.07
3254 3548 3.931468 GCATCGAGGGATACAATCATGAG 59.069 47.826 0.09 0.00 39.74 2.90
3255 3549 4.562347 GCATCGAGGGATACAATCATGAGT 60.562 45.833 0.09 0.00 39.74 3.41
3256 3550 5.336770 GCATCGAGGGATACAATCATGAGTA 60.337 44.000 0.09 0.00 39.74 2.59
3257 3551 5.707242 TCGAGGGATACAATCATGAGTAC 57.293 43.478 0.09 0.00 39.74 2.73
3258 3552 5.137551 TCGAGGGATACAATCATGAGTACA 58.862 41.667 0.09 0.00 39.74 2.90
3259 3553 5.009710 TCGAGGGATACAATCATGAGTACAC 59.990 44.000 0.09 0.00 39.74 2.90
3260 3554 5.542779 GAGGGATACAATCATGAGTACACC 58.457 45.833 0.09 5.39 39.74 4.16
3261 3555 4.348168 AGGGATACAATCATGAGTACACCC 59.652 45.833 20.04 20.04 38.92 4.61
3262 3556 4.307432 GGATACAATCATGAGTACACCCG 58.693 47.826 0.09 0.00 0.00 5.28
3263 3557 2.691409 ACAATCATGAGTACACCCGG 57.309 50.000 0.09 0.00 0.00 5.73
3264 3558 1.299541 CAATCATGAGTACACCCGGC 58.700 55.000 0.09 0.00 0.00 6.13
3265 3559 0.180406 AATCATGAGTACACCCGGCC 59.820 55.000 0.09 0.00 0.00 6.13
3266 3560 0.691078 ATCATGAGTACACCCGGCCT 60.691 55.000 0.00 0.00 0.00 5.19
3267 3561 1.144057 CATGAGTACACCCGGCCTC 59.856 63.158 0.00 0.00 0.00 4.70
3268 3562 1.001760 ATGAGTACACCCGGCCTCT 59.998 57.895 0.00 0.00 0.00 3.69
3269 3563 1.330655 ATGAGTACACCCGGCCTCTG 61.331 60.000 0.00 0.00 0.00 3.35
3270 3564 3.372554 GAGTACACCCGGCCTCTGC 62.373 68.421 0.00 0.00 0.00 4.26
3271 3565 3.702048 GTACACCCGGCCTCTGCA 61.702 66.667 0.00 0.00 40.13 4.41
3272 3566 2.687200 TACACCCGGCCTCTGCAT 60.687 61.111 0.00 0.00 40.13 3.96
3273 3567 1.382009 TACACCCGGCCTCTGCATA 60.382 57.895 0.00 0.00 40.13 3.14
3274 3568 0.978667 TACACCCGGCCTCTGCATAA 60.979 55.000 0.00 0.00 40.13 1.90
3275 3569 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
3276 3570 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
3277 3571 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
3278 3572 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
3279 3573 1.134220 CCCGGCCTCTGCATAACTAAA 60.134 52.381 0.00 0.00 40.13 1.85
3280 3574 2.639065 CCGGCCTCTGCATAACTAAAA 58.361 47.619 0.00 0.00 40.13 1.52
3281 3575 3.214328 CCGGCCTCTGCATAACTAAAAT 58.786 45.455 0.00 0.00 40.13 1.82
3282 3576 3.003689 CCGGCCTCTGCATAACTAAAATG 59.996 47.826 0.00 0.00 40.13 2.32
3292 3586 5.058149 CATAACTAAAATGCACACAGCCA 57.942 39.130 0.00 0.00 44.83 4.75
3293 3587 3.648339 AACTAAAATGCACACAGCCAG 57.352 42.857 0.00 0.00 44.83 4.85
3294 3588 1.270550 ACTAAAATGCACACAGCCAGC 59.729 47.619 0.00 0.00 44.83 4.85
3295 3589 1.270274 CTAAAATGCACACAGCCAGCA 59.730 47.619 0.00 0.00 44.83 4.41
3296 3590 0.249573 AAAATGCACACAGCCAGCAC 60.250 50.000 0.00 0.00 44.83 4.40
3297 3591 1.393487 AAATGCACACAGCCAGCACA 61.393 50.000 0.00 0.00 44.83 4.57
3298 3592 1.393487 AATGCACACAGCCAGCACAA 61.393 50.000 0.00 0.00 44.83 3.33
3299 3593 2.026590 GCACACAGCCAGCACAAC 59.973 61.111 0.00 0.00 37.23 3.32
3300 3594 2.773745 GCACACAGCCAGCACAACA 61.774 57.895 0.00 0.00 37.23 3.33
3301 3595 1.064621 CACACAGCCAGCACAACAC 59.935 57.895 0.00 0.00 0.00 3.32
3302 3596 1.378382 ACACAGCCAGCACAACACA 60.378 52.632 0.00 0.00 0.00 3.72
3303 3597 1.064621 CACAGCCAGCACAACACAC 59.935 57.895 0.00 0.00 0.00 3.82
3304 3598 1.378382 ACAGCCAGCACAACACACA 60.378 52.632 0.00 0.00 0.00 3.72
3305 3599 1.064621 CAGCCAGCACAACACACAC 59.935 57.895 0.00 0.00 0.00 3.82
3306 3600 1.378382 AGCCAGCACAACACACACA 60.378 52.632 0.00 0.00 0.00 3.72
3307 3601 1.226660 GCCAGCACAACACACACAC 60.227 57.895 0.00 0.00 0.00 3.82
3308 3602 1.932011 GCCAGCACAACACACACACA 61.932 55.000 0.00 0.00 0.00 3.72
3309 3603 0.179166 CCAGCACAACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
3310 3604 0.520847 CAGCACAACACACACACACA 59.479 50.000 0.00 0.00 0.00 3.72
3311 3605 1.068679 CAGCACAACACACACACACAA 60.069 47.619 0.00 0.00 0.00 3.33
3312 3606 1.611006 AGCACAACACACACACACAAA 59.389 42.857 0.00 0.00 0.00 2.83
3313 3607 2.230992 AGCACAACACACACACACAAAT 59.769 40.909 0.00 0.00 0.00 2.32
3314 3608 2.345041 GCACAACACACACACACAAATG 59.655 45.455 0.00 0.00 0.00 2.32
3315 3609 3.831112 CACAACACACACACACAAATGA 58.169 40.909 0.00 0.00 0.00 2.57
3316 3610 4.422840 CACAACACACACACACAAATGAT 58.577 39.130 0.00 0.00 0.00 2.45
3317 3611 4.500117 CACAACACACACACACAAATGATC 59.500 41.667 0.00 0.00 0.00 2.92
3318 3612 4.157472 ACAACACACACACACAAATGATCA 59.843 37.500 0.00 0.00 0.00 2.92
3319 3613 4.291540 ACACACACACACAAATGATCAC 57.708 40.909 0.00 0.00 0.00 3.06
3320 3614 3.242706 ACACACACACACAAATGATCACG 60.243 43.478 0.00 0.00 0.00 4.35
3321 3615 2.286950 ACACACACACAAATGATCACGC 60.287 45.455 0.00 0.00 0.00 5.34
3322 3616 1.266718 ACACACACAAATGATCACGCC 59.733 47.619 0.00 0.00 0.00 5.68
3323 3617 0.516877 ACACACAAATGATCACGCCG 59.483 50.000 0.00 0.00 0.00 6.46
3324 3618 0.179192 CACACAAATGATCACGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
3325 3619 1.226379 CACAAATGATCACGCCGGC 60.226 57.895 19.07 19.07 0.00 6.13
3326 3620 1.673993 ACAAATGATCACGCCGGCA 60.674 52.632 28.98 7.49 0.00 5.69
3327 3621 1.240641 ACAAATGATCACGCCGGCAA 61.241 50.000 28.98 11.85 0.00 4.52
3328 3622 0.109365 CAAATGATCACGCCGGCAAA 60.109 50.000 28.98 11.43 0.00 3.68
3329 3623 0.171007 AAATGATCACGCCGGCAAAG 59.829 50.000 28.98 15.51 0.00 2.77
3330 3624 1.656818 AATGATCACGCCGGCAAAGG 61.657 55.000 28.98 12.87 0.00 3.11
3338 3632 3.442441 CCGGCAAAGGCAAAGTCA 58.558 55.556 0.00 0.00 43.71 3.41
3339 3633 1.966762 CCGGCAAAGGCAAAGTCAT 59.033 52.632 0.00 0.00 43.71 3.06
3340 3634 0.388907 CCGGCAAAGGCAAAGTCATG 60.389 55.000 0.00 0.00 43.71 3.07
3341 3635 1.010419 CGGCAAAGGCAAAGTCATGC 61.010 55.000 0.00 0.00 45.67 4.06
3349 3643 2.798976 GCAAAGTCATGCAAAGACCA 57.201 45.000 16.35 0.00 45.70 4.02
3350 3644 3.096489 GCAAAGTCATGCAAAGACCAA 57.904 42.857 16.35 0.00 45.70 3.67
3351 3645 3.456280 GCAAAGTCATGCAAAGACCAAA 58.544 40.909 16.35 0.00 45.70 3.28
3352 3646 3.492011 GCAAAGTCATGCAAAGACCAAAG 59.508 43.478 16.35 7.84 45.70 2.77
3353 3647 3.375782 AAGTCATGCAAAGACCAAAGC 57.624 42.857 16.35 0.00 36.68 3.51
3354 3648 2.590821 AGTCATGCAAAGACCAAAGCT 58.409 42.857 16.35 0.00 36.68 3.74
3355 3649 3.754965 AGTCATGCAAAGACCAAAGCTA 58.245 40.909 16.35 0.00 36.68 3.32
3356 3650 4.338879 AGTCATGCAAAGACCAAAGCTAT 58.661 39.130 16.35 0.00 36.68 2.97
3357 3651 4.157289 AGTCATGCAAAGACCAAAGCTATG 59.843 41.667 16.35 0.00 36.68 2.23
3358 3652 3.119388 TCATGCAAAGACCAAAGCTATGC 60.119 43.478 0.00 0.00 0.00 3.14
3359 3653 1.545582 TGCAAAGACCAAAGCTATGCC 59.454 47.619 0.00 0.00 0.00 4.40
3360 3654 1.821136 GCAAAGACCAAAGCTATGCCT 59.179 47.619 0.00 0.00 0.00 4.75
3361 3655 3.016736 GCAAAGACCAAAGCTATGCCTA 58.983 45.455 0.00 0.00 0.00 3.93
3362 3656 3.065925 GCAAAGACCAAAGCTATGCCTAG 59.934 47.826 0.00 0.00 0.00 3.02
3363 3657 3.567478 AAGACCAAAGCTATGCCTAGG 57.433 47.619 3.67 3.67 0.00 3.02
3364 3658 1.141858 AGACCAAAGCTATGCCTAGGC 59.858 52.381 27.71 27.71 42.35 3.93
3365 3659 0.179045 ACCAAAGCTATGCCTAGGCG 60.179 55.000 28.28 15.59 45.51 5.52
3366 3660 0.886490 CCAAAGCTATGCCTAGGCGG 60.886 60.000 28.28 20.54 45.51 6.13
3367 3661 0.106708 CAAAGCTATGCCTAGGCGGA 59.893 55.000 28.28 17.40 45.51 5.54
3368 3662 0.106894 AAAGCTATGCCTAGGCGGAC 59.893 55.000 28.28 17.21 45.51 4.79
3369 3663 2.049063 GCTATGCCTAGGCGGACG 60.049 66.667 28.28 16.93 45.51 4.79
3370 3664 2.561956 GCTATGCCTAGGCGGACGA 61.562 63.158 28.28 11.40 45.51 4.20
3371 3665 2.038690 CTATGCCTAGGCGGACGAA 58.961 57.895 28.28 10.60 45.51 3.85
3372 3666 0.039074 CTATGCCTAGGCGGACGAAG 60.039 60.000 28.28 14.41 45.51 3.79
3373 3667 0.466739 TATGCCTAGGCGGACGAAGA 60.467 55.000 28.28 9.01 45.51 2.87
3374 3668 1.327690 ATGCCTAGGCGGACGAAGAA 61.328 55.000 28.28 8.23 45.51 2.52
3375 3669 1.217244 GCCTAGGCGGACGAAGAAA 59.783 57.895 20.16 0.00 33.16 2.52
3376 3670 0.390735 GCCTAGGCGGACGAAGAAAA 60.391 55.000 20.16 0.00 33.16 2.29
3377 3671 1.641577 CCTAGGCGGACGAAGAAAAG 58.358 55.000 0.00 0.00 33.16 2.27
3378 3672 1.203994 CCTAGGCGGACGAAGAAAAGA 59.796 52.381 0.00 0.00 33.16 2.52
3379 3673 2.353406 CCTAGGCGGACGAAGAAAAGAA 60.353 50.000 0.00 0.00 33.16 2.52
3380 3674 2.249844 AGGCGGACGAAGAAAAGAAA 57.750 45.000 0.00 0.00 0.00 2.52
3381 3675 2.567985 AGGCGGACGAAGAAAAGAAAA 58.432 42.857 0.00 0.00 0.00 2.29
3382 3676 2.946990 AGGCGGACGAAGAAAAGAAAAA 59.053 40.909 0.00 0.00 0.00 1.94
3405 3699 6.582437 AAAACCTAAGCAATGAAAACAACG 57.418 33.333 0.00 0.00 0.00 4.10
3406 3700 5.508200 AACCTAAGCAATGAAAACAACGA 57.492 34.783 0.00 0.00 0.00 3.85
3407 3701 5.705609 ACCTAAGCAATGAAAACAACGAT 57.294 34.783 0.00 0.00 0.00 3.73
3408 3702 6.084326 ACCTAAGCAATGAAAACAACGATT 57.916 33.333 0.00 0.00 0.00 3.34
3409 3703 5.920273 ACCTAAGCAATGAAAACAACGATTG 59.080 36.000 0.00 0.00 0.00 2.67
3410 3704 6.148948 CCTAAGCAATGAAAACAACGATTGA 58.851 36.000 0.00 0.00 0.00 2.57
3411 3705 5.888412 AAGCAATGAAAACAACGATTGAC 57.112 34.783 0.00 0.00 0.00 3.18
3412 3706 4.930963 AGCAATGAAAACAACGATTGACA 58.069 34.783 0.00 0.00 0.00 3.58
3413 3707 5.347342 AGCAATGAAAACAACGATTGACAA 58.653 33.333 0.00 0.00 0.00 3.18
3414 3708 5.984926 AGCAATGAAAACAACGATTGACAAT 59.015 32.000 0.00 0.00 0.00 2.71
3415 3709 6.066410 GCAATGAAAACAACGATTGACAATG 58.934 36.000 5.14 1.03 0.00 2.82
3416 3710 6.292274 GCAATGAAAACAACGATTGACAATGT 60.292 34.615 5.14 1.66 0.00 2.71
3417 3711 7.096271 GCAATGAAAACAACGATTGACAATGTA 60.096 33.333 5.14 0.00 0.00 2.29
3418 3712 7.851822 ATGAAAACAACGATTGACAATGTAC 57.148 32.000 5.14 0.00 0.00 2.90
3419 3713 6.786207 TGAAAACAACGATTGACAATGTACA 58.214 32.000 5.14 0.00 0.00 2.90
3420 3714 7.251281 TGAAAACAACGATTGACAATGTACAA 58.749 30.769 5.14 0.00 0.00 2.41
3421 3715 7.219154 TGAAAACAACGATTGACAATGTACAAC 59.781 33.333 5.14 0.00 0.00 3.32
3422 3716 4.768145 ACAACGATTGACAATGTACAACG 58.232 39.130 5.14 4.36 0.00 4.10
3423 3717 4.148166 CAACGATTGACAATGTACAACGG 58.852 43.478 5.14 0.00 0.00 4.44
3424 3718 3.395639 ACGATTGACAATGTACAACGGT 58.604 40.909 5.14 0.00 0.00 4.83
3425 3719 3.185594 ACGATTGACAATGTACAACGGTG 59.814 43.478 5.14 0.00 0.00 4.94
3426 3720 3.430556 CGATTGACAATGTACAACGGTGA 59.569 43.478 7.88 0.00 0.00 4.02
3427 3721 4.665645 CGATTGACAATGTACAACGGTGAC 60.666 45.833 7.88 1.17 0.00 3.67
3428 3722 2.485903 TGACAATGTACAACGGTGACC 58.514 47.619 7.88 0.00 0.00 4.02
3429 3723 2.158943 TGACAATGTACAACGGTGACCA 60.159 45.455 7.88 2.85 0.00 4.02
3430 3724 3.071479 GACAATGTACAACGGTGACCAT 58.929 45.455 7.88 5.54 0.00 3.55
3431 3725 3.071479 ACAATGTACAACGGTGACCATC 58.929 45.455 7.88 0.00 0.00 3.51
3432 3726 2.004583 ATGTACAACGGTGACCATCG 57.995 50.000 7.88 0.60 41.46 3.84
3433 3727 0.038067 TGTACAACGGTGACCATCGG 60.038 55.000 7.88 0.00 39.68 4.18
3434 3728 1.079681 TACAACGGTGACCATCGGC 60.080 57.895 7.88 0.00 39.68 5.54
3435 3729 2.510064 TACAACGGTGACCATCGGCC 62.510 60.000 7.88 0.00 39.68 6.13
3436 3730 4.404098 AACGGTGACCATCGGCCC 62.404 66.667 1.11 0.00 39.68 5.80
3439 3733 4.489771 GGTGACCATCGGCCCCAG 62.490 72.222 0.00 0.00 0.00 4.45
3440 3734 3.717294 GTGACCATCGGCCCCAGT 61.717 66.667 0.00 0.00 0.00 4.00
3441 3735 3.399181 TGACCATCGGCCCCAGTC 61.399 66.667 0.00 0.00 0.00 3.51
3442 3736 3.399181 GACCATCGGCCCCAGTCA 61.399 66.667 0.00 0.00 0.00 3.41
3443 3737 2.692368 ACCATCGGCCCCAGTCAT 60.692 61.111 0.00 0.00 0.00 3.06
3444 3738 2.111878 CCATCGGCCCCAGTCATC 59.888 66.667 0.00 0.00 0.00 2.92
3445 3739 2.446848 CCATCGGCCCCAGTCATCT 61.447 63.158 0.00 0.00 0.00 2.90
3446 3740 1.070445 CATCGGCCCCAGTCATCTC 59.930 63.158 0.00 0.00 0.00 2.75
3447 3741 1.074926 ATCGGCCCCAGTCATCTCT 60.075 57.895 0.00 0.00 0.00 3.10
3448 3742 0.692419 ATCGGCCCCAGTCATCTCTT 60.692 55.000 0.00 0.00 0.00 2.85
3449 3743 1.153289 CGGCCCCAGTCATCTCTTG 60.153 63.158 0.00 0.00 0.00 3.02
3450 3744 1.617018 CGGCCCCAGTCATCTCTTGA 61.617 60.000 0.00 0.00 0.00 3.02
3465 3759 7.495901 TCATCTCTTGACATCATTAAGACTCC 58.504 38.462 0.00 0.00 0.00 3.85
3466 3760 5.895928 TCTCTTGACATCATTAAGACTCCG 58.104 41.667 0.00 0.00 0.00 4.63
3467 3761 5.652452 TCTCTTGACATCATTAAGACTCCGA 59.348 40.000 0.00 0.00 0.00 4.55
3468 3762 5.895928 TCTTGACATCATTAAGACTCCGAG 58.104 41.667 0.00 0.00 0.00 4.63
3469 3763 5.652452 TCTTGACATCATTAAGACTCCGAGA 59.348 40.000 1.33 0.00 0.00 4.04
3470 3764 5.914898 TGACATCATTAAGACTCCGAGAA 57.085 39.130 1.33 0.00 0.00 2.87
3471 3765 5.895928 TGACATCATTAAGACTCCGAGAAG 58.104 41.667 1.33 0.00 0.00 2.85
3472 3766 5.163509 TGACATCATTAAGACTCCGAGAAGG 60.164 44.000 1.33 0.00 42.97 3.46
3473 3767 4.100189 ACATCATTAAGACTCCGAGAAGGG 59.900 45.833 1.33 0.00 41.52 3.95
3474 3768 3.709587 TCATTAAGACTCCGAGAAGGGT 58.290 45.455 1.33 0.00 41.52 4.34
3475 3769 4.094476 TCATTAAGACTCCGAGAAGGGTT 58.906 43.478 1.33 0.00 41.52 4.11
3476 3770 4.159879 TCATTAAGACTCCGAGAAGGGTTC 59.840 45.833 1.33 0.00 41.52 3.62
3477 3771 2.312424 AAGACTCCGAGAAGGGTTCT 57.688 50.000 1.33 0.00 44.21 3.01
3486 3780 1.897560 AGAAGGGTTCTCCAAAAGCG 58.102 50.000 0.00 0.00 34.07 4.68
3487 3781 1.420138 AGAAGGGTTCTCCAAAAGCGA 59.580 47.619 0.00 0.00 34.07 4.93
3488 3782 1.535896 GAAGGGTTCTCCAAAAGCGAC 59.464 52.381 0.00 0.00 38.24 5.19
3489 3783 0.602905 AGGGTTCTCCAAAAGCGACG 60.603 55.000 0.00 0.00 38.24 5.12
3490 3784 1.206831 GGTTCTCCAAAAGCGACGC 59.793 57.895 13.03 13.03 0.00 5.19
3491 3785 1.206831 GTTCTCCAAAAGCGACGCC 59.793 57.895 17.79 0.00 0.00 5.68
3492 3786 1.070786 TTCTCCAAAAGCGACGCCT 59.929 52.632 17.79 0.00 0.00 5.52
3493 3787 0.949105 TTCTCCAAAAGCGACGCCTC 60.949 55.000 17.79 0.00 0.00 4.70
3494 3788 2.358247 TCCAAAAGCGACGCCTCC 60.358 61.111 17.79 0.00 0.00 4.30
3495 3789 2.668212 CCAAAAGCGACGCCTCCA 60.668 61.111 17.79 0.00 0.00 3.86
3496 3790 2.258013 CCAAAAGCGACGCCTCCAA 61.258 57.895 17.79 0.00 0.00 3.53
3497 3791 1.082104 CAAAAGCGACGCCTCCAAC 60.082 57.895 17.79 0.00 0.00 3.77
3498 3792 1.525077 AAAAGCGACGCCTCCAACA 60.525 52.632 17.79 0.00 0.00 3.33
3499 3793 1.098712 AAAAGCGACGCCTCCAACAA 61.099 50.000 17.79 0.00 0.00 2.83
3500 3794 1.507141 AAAGCGACGCCTCCAACAAG 61.507 55.000 17.79 0.00 0.00 3.16
3501 3795 3.423154 GCGACGCCTCCAACAAGG 61.423 66.667 9.14 0.00 39.62 3.61
3502 3796 2.342279 CGACGCCTCCAACAAGGA 59.658 61.111 0.00 0.00 46.75 3.36
3511 3805 1.464734 TCCAACAAGGAAACAACGCA 58.535 45.000 0.00 0.00 45.65 5.24
3512 3806 1.133407 TCCAACAAGGAAACAACGCAC 59.867 47.619 0.00 0.00 45.65 5.34
3513 3807 1.135257 CCAACAAGGAAACAACGCACA 60.135 47.619 0.00 0.00 41.22 4.57
3514 3808 2.600731 CAACAAGGAAACAACGCACAA 58.399 42.857 0.00 0.00 0.00 3.33
3515 3809 2.559998 ACAAGGAAACAACGCACAAG 57.440 45.000 0.00 0.00 0.00 3.16
3516 3810 1.199624 CAAGGAAACAACGCACAAGC 58.800 50.000 0.00 0.00 37.42 4.01
3536 3830 3.427425 CGCCGTCGCCAAATCCAA 61.427 61.111 0.00 0.00 0.00 3.53
3537 3831 2.178273 GCCGTCGCCAAATCCAAC 59.822 61.111 0.00 0.00 0.00 3.77
3538 3832 2.874751 CCGTCGCCAAATCCAACC 59.125 61.111 0.00 0.00 0.00 3.77
3539 3833 1.969064 CCGTCGCCAAATCCAACCA 60.969 57.895 0.00 0.00 0.00 3.67
3540 3834 1.209127 CGTCGCCAAATCCAACCAC 59.791 57.895 0.00 0.00 0.00 4.16
3541 3835 1.584495 GTCGCCAAATCCAACCACC 59.416 57.895 0.00 0.00 0.00 4.61
3542 3836 1.151679 TCGCCAAATCCAACCACCA 59.848 52.632 0.00 0.00 0.00 4.17
3543 3837 0.468214 TCGCCAAATCCAACCACCAA 60.468 50.000 0.00 0.00 0.00 3.67
3544 3838 0.038343 CGCCAAATCCAACCACCAAG 60.038 55.000 0.00 0.00 0.00 3.61
3545 3839 0.321346 GCCAAATCCAACCACCAAGG 59.679 55.000 0.00 0.00 45.67 3.61
3546 3840 0.975887 CCAAATCCAACCACCAAGGG 59.024 55.000 0.00 0.00 43.89 3.95
3547 3841 1.715785 CAAATCCAACCACCAAGGGT 58.284 50.000 0.00 0.00 45.04 4.34
3548 3842 1.618343 CAAATCCAACCACCAAGGGTC 59.382 52.381 0.00 0.00 41.32 4.46
3549 3843 0.251165 AATCCAACCACCAAGGGTCG 60.251 55.000 0.00 0.00 41.32 4.79
3550 3844 2.137177 ATCCAACCACCAAGGGTCGG 62.137 60.000 0.00 0.00 41.32 4.79
3551 3845 2.983592 CAACCACCAAGGGTCGGC 60.984 66.667 0.00 0.00 41.32 5.54
3552 3846 3.175710 AACCACCAAGGGTCGGCT 61.176 61.111 0.00 0.00 41.32 5.52
3553 3847 3.192103 AACCACCAAGGGTCGGCTC 62.192 63.158 0.00 0.00 41.32 4.70
3554 3848 3.636231 CCACCAAGGGTCGGCTCA 61.636 66.667 0.00 0.00 31.02 4.26
3555 3849 2.358737 CACCAAGGGTCGGCTCAC 60.359 66.667 0.00 0.00 31.02 3.51
3556 3850 4.003788 ACCAAGGGTCGGCTCACG 62.004 66.667 0.00 0.00 46.11 4.35
3557 3851 4.760047 CCAAGGGTCGGCTCACGG 62.760 72.222 0.00 0.00 44.45 4.94
3558 3852 4.760047 CAAGGGTCGGCTCACGGG 62.760 72.222 0.00 0.00 44.45 5.28
3561 3855 4.324991 GGGTCGGCTCACGGGTTT 62.325 66.667 0.00 0.00 44.45 3.27
3562 3856 2.281276 GGTCGGCTCACGGGTTTT 60.281 61.111 0.00 0.00 44.45 2.43
3563 3857 2.322830 GGTCGGCTCACGGGTTTTC 61.323 63.158 0.00 0.00 44.45 2.29
3564 3858 1.595929 GTCGGCTCACGGGTTTTCA 60.596 57.895 0.00 0.00 44.45 2.69
3565 3859 1.595929 TCGGCTCACGGGTTTTCAC 60.596 57.895 0.00 0.00 44.45 3.18
3566 3860 2.613506 CGGCTCACGGGTTTTCACC 61.614 63.158 0.00 0.00 43.37 4.02
3576 3870 1.981256 GGTTTTCACCCTGAAGAGCA 58.019 50.000 1.11 0.00 38.40 4.26
3577 3871 2.306847 GGTTTTCACCCTGAAGAGCAA 58.693 47.619 1.11 0.00 38.40 3.91
3578 3872 2.693074 GGTTTTCACCCTGAAGAGCAAA 59.307 45.455 1.11 0.00 38.40 3.68
3579 3873 3.321968 GGTTTTCACCCTGAAGAGCAAAT 59.678 43.478 1.11 0.00 38.40 2.32
3580 3874 4.550422 GTTTTCACCCTGAAGAGCAAATC 58.450 43.478 0.00 0.00 37.70 2.17
3581 3875 3.795688 TTCACCCTGAAGAGCAAATCT 57.204 42.857 0.00 0.00 41.27 2.40
3582 3876 3.063510 TCACCCTGAAGAGCAAATCTG 57.936 47.619 0.00 0.00 38.67 2.90
3583 3877 2.639347 TCACCCTGAAGAGCAAATCTGA 59.361 45.455 0.00 0.00 38.67 3.27
3584 3878 3.008330 CACCCTGAAGAGCAAATCTGAG 58.992 50.000 0.00 0.00 38.67 3.35
3585 3879 2.015587 CCCTGAAGAGCAAATCTGAGC 58.984 52.381 0.00 0.00 38.67 4.26
3586 3880 2.617276 CCCTGAAGAGCAAATCTGAGCA 60.617 50.000 0.00 0.00 38.67 4.26
3587 3881 3.079578 CCTGAAGAGCAAATCTGAGCAA 58.920 45.455 0.00 0.00 38.67 3.91
3588 3882 3.504906 CCTGAAGAGCAAATCTGAGCAAA 59.495 43.478 0.00 0.00 38.67 3.68
3589 3883 4.474113 CTGAAGAGCAAATCTGAGCAAAC 58.526 43.478 0.00 0.00 38.67 2.93
3590 3884 4.139786 TGAAGAGCAAATCTGAGCAAACT 58.860 39.130 0.00 0.00 38.67 2.66
3591 3885 4.214971 TGAAGAGCAAATCTGAGCAAACTC 59.785 41.667 0.00 0.00 43.76 3.01
3592 3886 3.080319 AGAGCAAATCTGAGCAAACTCC 58.920 45.455 0.00 0.00 42.74 3.85
3593 3887 1.808945 AGCAAATCTGAGCAAACTCCG 59.191 47.619 0.00 0.00 42.74 4.63
3594 3888 1.806542 GCAAATCTGAGCAAACTCCGA 59.193 47.619 0.00 0.00 42.74 4.55
3595 3889 2.159599 GCAAATCTGAGCAAACTCCGAG 60.160 50.000 0.00 0.00 42.74 4.63
3596 3890 1.731720 AATCTGAGCAAACTCCGAGC 58.268 50.000 0.00 0.00 42.74 5.03
3597 3891 0.610174 ATCTGAGCAAACTCCGAGCA 59.390 50.000 0.00 0.00 42.74 4.26
3598 3892 0.392706 TCTGAGCAAACTCCGAGCAA 59.607 50.000 0.00 0.00 42.74 3.91
3599 3893 1.002430 TCTGAGCAAACTCCGAGCAAT 59.998 47.619 0.00 0.00 42.74 3.56
3600 3894 1.129998 CTGAGCAAACTCCGAGCAATG 59.870 52.381 0.00 0.00 42.74 2.82
3601 3895 0.179179 GAGCAAACTCCGAGCAATGC 60.179 55.000 0.00 0.00 36.90 3.56
3602 3896 1.153958 GCAAACTCCGAGCAATGCC 60.154 57.895 0.00 0.00 0.00 4.40
3603 3897 1.135315 CAAACTCCGAGCAATGCCG 59.865 57.895 0.00 5.32 0.00 5.69
3604 3898 1.302511 AAACTCCGAGCAATGCCGT 60.303 52.632 0.00 0.00 0.00 5.68
3605 3899 1.298859 AAACTCCGAGCAATGCCGTC 61.299 55.000 0.00 0.00 0.00 4.79
3606 3900 2.125552 CTCCGAGCAATGCCGTCA 60.126 61.111 0.00 0.00 0.00 4.35
3607 3901 1.522355 CTCCGAGCAATGCCGTCAT 60.522 57.895 0.00 0.00 33.53 3.06
3608 3902 1.493950 CTCCGAGCAATGCCGTCATC 61.494 60.000 0.00 0.00 31.27 2.92
3609 3903 1.815003 CCGAGCAATGCCGTCATCA 60.815 57.895 0.00 0.00 31.27 3.07
3610 3904 1.640069 CGAGCAATGCCGTCATCAG 59.360 57.895 0.00 0.00 31.27 2.90
3611 3905 0.807275 CGAGCAATGCCGTCATCAGA 60.807 55.000 0.00 0.00 31.27 3.27
3612 3906 0.935898 GAGCAATGCCGTCATCAGAG 59.064 55.000 0.00 0.00 31.27 3.35
3613 3907 0.251354 AGCAATGCCGTCATCAGAGT 59.749 50.000 0.00 0.00 31.27 3.24
3614 3908 1.482182 AGCAATGCCGTCATCAGAGTA 59.518 47.619 0.00 0.00 31.27 2.59
3615 3909 2.093500 AGCAATGCCGTCATCAGAGTAA 60.093 45.455 0.00 0.00 31.27 2.24
3616 3910 2.030946 GCAATGCCGTCATCAGAGTAAC 59.969 50.000 0.00 0.00 31.27 2.50
3617 3911 2.209838 ATGCCGTCATCAGAGTAACG 57.790 50.000 0.00 0.00 35.01 3.18
3618 3912 0.457853 TGCCGTCATCAGAGTAACGC 60.458 55.000 0.00 0.00 33.95 4.84
3619 3913 1.146358 GCCGTCATCAGAGTAACGCC 61.146 60.000 0.00 0.00 33.95 5.68
3620 3914 0.456221 CCGTCATCAGAGTAACGCCT 59.544 55.000 0.00 0.00 33.95 5.52
3621 3915 1.550065 CGTCATCAGAGTAACGCCTG 58.450 55.000 0.00 0.00 0.00 4.85
3622 3916 1.135373 CGTCATCAGAGTAACGCCTGT 60.135 52.381 0.00 0.00 0.00 4.00
3630 3924 3.498397 CAGAGTAACGCCTGTTCAAATGT 59.502 43.478 0.00 0.00 39.54 2.71
3631 3925 4.024048 CAGAGTAACGCCTGTTCAAATGTT 60.024 41.667 0.00 0.00 39.54 2.71
3867 4423 2.837291 CCGAGGCAGAGGGGAGAG 60.837 72.222 0.00 0.00 0.00 3.20
3868 4424 2.837291 CGAGGCAGAGGGGAGAGG 60.837 72.222 0.00 0.00 0.00 3.69
3869 4425 3.160748 GAGGCAGAGGGGAGAGGC 61.161 72.222 0.00 0.00 0.00 4.70
3873 4429 2.123077 CAGAGGGGAGAGGCGGAT 60.123 66.667 0.00 0.00 0.00 4.18
3874 4430 1.153989 CAGAGGGGAGAGGCGGATA 59.846 63.158 0.00 0.00 0.00 2.59
3875 4431 0.470080 CAGAGGGGAGAGGCGGATAA 60.470 60.000 0.00 0.00 0.00 1.75
3876 4432 0.470268 AGAGGGGAGAGGCGGATAAC 60.470 60.000 0.00 0.00 0.00 1.89
3891 4447 4.946784 GGATAACGAATGACTTTGTGCT 57.053 40.909 0.00 0.00 0.00 4.40
3892 4448 4.898370 GGATAACGAATGACTTTGTGCTC 58.102 43.478 0.00 0.00 0.00 4.26
3893 4449 4.631813 GGATAACGAATGACTTTGTGCTCT 59.368 41.667 0.00 0.00 0.00 4.09
3894 4450 5.220491 GGATAACGAATGACTTTGTGCTCTC 60.220 44.000 0.00 0.00 0.00 3.20
3895 4451 3.393089 ACGAATGACTTTGTGCTCTCT 57.607 42.857 0.00 0.00 0.00 3.10
3896 4452 4.521130 ACGAATGACTTTGTGCTCTCTA 57.479 40.909 0.00 0.00 0.00 2.43
3897 4453 4.883083 ACGAATGACTTTGTGCTCTCTAA 58.117 39.130 0.00 0.00 0.00 2.10
3898 4454 4.926238 ACGAATGACTTTGTGCTCTCTAAG 59.074 41.667 0.00 0.00 0.00 2.18
3899 4455 5.164233 CGAATGACTTTGTGCTCTCTAAGA 58.836 41.667 0.00 0.00 0.00 2.10
3900 4456 5.635280 CGAATGACTTTGTGCTCTCTAAGAA 59.365 40.000 0.00 0.00 0.00 2.52
3901 4457 6.183360 CGAATGACTTTGTGCTCTCTAAGAAG 60.183 42.308 0.00 0.00 0.00 2.85
3902 4458 4.887748 TGACTTTGTGCTCTCTAAGAAGG 58.112 43.478 0.00 0.00 0.00 3.46
3903 4459 3.669536 ACTTTGTGCTCTCTAAGAAGGC 58.330 45.455 0.00 0.00 0.00 4.35
3904 4460 3.326297 ACTTTGTGCTCTCTAAGAAGGCT 59.674 43.478 0.00 0.00 0.00 4.58
3905 4461 3.325293 TTGTGCTCTCTAAGAAGGCTG 57.675 47.619 0.00 0.00 0.00 4.85
3906 4462 2.251818 TGTGCTCTCTAAGAAGGCTGT 58.748 47.619 0.00 0.00 0.00 4.40
3907 4463 2.232452 TGTGCTCTCTAAGAAGGCTGTC 59.768 50.000 0.00 0.00 0.00 3.51
3908 4464 1.827969 TGCTCTCTAAGAAGGCTGTCC 59.172 52.381 0.00 0.00 0.00 4.02
3909 4465 1.138069 GCTCTCTAAGAAGGCTGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
3910 4466 1.407258 CTCTCTAAGAAGGCTGTCCCG 59.593 57.143 0.00 0.00 39.21 5.14
3911 4467 0.461961 CTCTAAGAAGGCTGTCCCGG 59.538 60.000 0.00 0.00 39.21 5.73
3912 4468 0.040646 TCTAAGAAGGCTGTCCCGGA 59.959 55.000 0.73 0.00 39.21 5.14
3913 4469 1.123928 CTAAGAAGGCTGTCCCGGAT 58.876 55.000 0.73 0.00 39.21 4.18
3914 4470 1.069358 CTAAGAAGGCTGTCCCGGATC 59.931 57.143 0.73 0.00 39.21 3.36
3915 4471 0.618968 AAGAAGGCTGTCCCGGATCT 60.619 55.000 0.73 0.00 39.21 2.75
3916 4472 0.618968 AGAAGGCTGTCCCGGATCTT 60.619 55.000 0.73 0.00 39.21 2.40
3917 4473 1.120530 GAAGGCTGTCCCGGATCTTA 58.879 55.000 0.73 0.00 39.21 2.10
3918 4474 1.694696 GAAGGCTGTCCCGGATCTTAT 59.305 52.381 0.73 0.00 39.21 1.73
3919 4475 1.807814 AGGCTGTCCCGGATCTTATT 58.192 50.000 0.73 0.00 39.21 1.40
3920 4476 1.417890 AGGCTGTCCCGGATCTTATTG 59.582 52.381 0.73 0.00 39.21 1.90
3921 4477 1.141053 GGCTGTCCCGGATCTTATTGT 59.859 52.381 0.73 0.00 0.00 2.71
3922 4478 2.367567 GGCTGTCCCGGATCTTATTGTA 59.632 50.000 0.73 0.00 0.00 2.41
3923 4479 3.181458 GGCTGTCCCGGATCTTATTGTAA 60.181 47.826 0.73 0.00 0.00 2.41
3924 4480 4.505039 GGCTGTCCCGGATCTTATTGTAAT 60.505 45.833 0.73 0.00 0.00 1.89
3925 4481 5.279809 GGCTGTCCCGGATCTTATTGTAATA 60.280 44.000 0.73 0.00 0.00 0.98
3926 4482 6.407202 GCTGTCCCGGATCTTATTGTAATAT 58.593 40.000 0.73 0.00 0.00 1.28
3927 4483 6.535508 GCTGTCCCGGATCTTATTGTAATATC 59.464 42.308 0.73 0.00 0.00 1.63
3928 4484 6.627243 TGTCCCGGATCTTATTGTAATATCG 58.373 40.000 0.73 0.00 0.00 2.92
3929 4485 6.209986 TGTCCCGGATCTTATTGTAATATCGT 59.790 38.462 0.73 0.00 0.00 3.73
3930 4486 6.750963 GTCCCGGATCTTATTGTAATATCGTC 59.249 42.308 0.73 0.00 0.00 4.20
3931 4487 6.434965 TCCCGGATCTTATTGTAATATCGTCA 59.565 38.462 0.73 0.00 0.00 4.35
3932 4488 6.752351 CCCGGATCTTATTGTAATATCGTCAG 59.248 42.308 0.73 0.00 0.00 3.51
3933 4489 7.313646 CCGGATCTTATTGTAATATCGTCAGT 58.686 38.462 0.00 0.00 0.00 3.41
3934 4490 7.273598 CCGGATCTTATTGTAATATCGTCAGTG 59.726 40.741 0.00 0.00 0.00 3.66
3935 4491 7.201359 CGGATCTTATTGTAATATCGTCAGTGC 60.201 40.741 0.00 0.00 0.00 4.40
3936 4492 7.063544 GGATCTTATTGTAATATCGTCAGTGCC 59.936 40.741 0.00 0.00 0.00 5.01
3937 4493 7.050970 TCTTATTGTAATATCGTCAGTGCCT 57.949 36.000 0.00 0.00 0.00 4.75
3938 4494 7.497595 TCTTATTGTAATATCGTCAGTGCCTT 58.502 34.615 0.00 0.00 0.00 4.35
3939 4495 7.985184 TCTTATTGTAATATCGTCAGTGCCTTT 59.015 33.333 0.00 0.00 0.00 3.11
3940 4496 6.604735 ATTGTAATATCGTCAGTGCCTTTC 57.395 37.500 0.00 0.00 0.00 2.62
3941 4497 4.109766 TGTAATATCGTCAGTGCCTTTCG 58.890 43.478 0.00 0.00 0.00 3.46
3942 4498 1.571919 ATATCGTCAGTGCCTTTCGC 58.428 50.000 0.00 0.00 38.31 4.70
3943 4499 0.459585 TATCGTCAGTGCCTTTCGCC 60.460 55.000 0.00 0.00 36.24 5.54
3944 4500 3.777925 CGTCAGTGCCTTTCGCCG 61.778 66.667 0.00 0.00 36.24 6.46
3945 4501 2.357034 GTCAGTGCCTTTCGCCGA 60.357 61.111 0.00 0.00 36.24 5.54
3946 4502 2.357034 TCAGTGCCTTTCGCCGAC 60.357 61.111 0.00 0.00 36.24 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.248602 CGCTTGGGATATAACAGCAACTC 59.751 47.826 0.00 0.00 0.00 3.01
1 2 3.206150 CGCTTGGGATATAACAGCAACT 58.794 45.455 0.00 0.00 0.00 3.16
2 3 2.287009 GCGCTTGGGATATAACAGCAAC 60.287 50.000 0.00 0.00 0.00 4.17
3 4 1.946768 GCGCTTGGGATATAACAGCAA 59.053 47.619 0.00 0.00 0.00 3.91
4 5 1.134250 TGCGCTTGGGATATAACAGCA 60.134 47.619 9.73 0.00 0.00 4.41
5 6 1.593196 TGCGCTTGGGATATAACAGC 58.407 50.000 9.73 0.00 0.00 4.40
6 7 2.031682 GCTTGCGCTTGGGATATAACAG 60.032 50.000 9.73 0.00 0.00 3.16
7 8 1.946768 GCTTGCGCTTGGGATATAACA 59.053 47.619 9.73 0.00 0.00 2.41
8 9 1.069906 CGCTTGCGCTTGGGATATAAC 60.070 52.381 9.73 0.00 0.00 1.89
9 10 1.225855 CGCTTGCGCTTGGGATATAA 58.774 50.000 9.73 0.00 0.00 0.98
10 11 0.602638 CCGCTTGCGCTTGGGATATA 60.603 55.000 9.73 0.00 0.00 0.86
11 12 1.893808 CCGCTTGCGCTTGGGATAT 60.894 57.895 9.73 0.00 0.00 1.63
12 13 2.513666 CCGCTTGCGCTTGGGATA 60.514 61.111 9.73 0.00 0.00 2.59
17 18 3.615536 CTTTCCCCGCTTGCGCTTG 62.616 63.158 9.73 1.85 0.00 4.01
18 19 3.365265 CTTTCCCCGCTTGCGCTT 61.365 61.111 9.73 0.00 0.00 4.68
19 20 3.842925 TTCTTTCCCCGCTTGCGCT 62.843 57.895 9.73 0.00 0.00 5.92
20 21 3.328288 CTTCTTTCCCCGCTTGCGC 62.328 63.158 9.71 0.00 0.00 6.09
21 22 1.026718 ATCTTCTTTCCCCGCTTGCG 61.027 55.000 8.14 8.14 0.00 4.85
22 23 0.453390 CATCTTCTTTCCCCGCTTGC 59.547 55.000 0.00 0.00 0.00 4.01
50 51 2.543012 GAGACATTCATGAGCGACCATG 59.457 50.000 10.14 10.14 43.88 3.66
56 57 1.485397 CGGAGAGACATTCATGAGCG 58.515 55.000 0.00 0.00 0.00 5.03
59 60 2.831526 TGTTCCGGAGAGACATTCATGA 59.168 45.455 3.34 0.00 0.00 3.07
62 63 2.897326 TCTTGTTCCGGAGAGACATTCA 59.103 45.455 3.34 0.00 0.00 2.57
75 76 4.440387 GGTCTCCTCGTTATCTCTTGTTCC 60.440 50.000 0.00 0.00 0.00 3.62
148 150 5.605534 TCTATGGAGCAGCAAGTTATTCTC 58.394 41.667 0.00 0.00 0.00 2.87
162 164 2.462456 TGGATTGCGATCTATGGAGC 57.538 50.000 13.72 0.00 32.66 4.70
180 184 3.213506 TGGTGTCTTTGGTTCTGTGATG 58.786 45.455 0.00 0.00 0.00 3.07
196 200 2.459644 CAATGATGGATGGGTTGGTGT 58.540 47.619 0.00 0.00 0.00 4.16
199 203 1.137479 GTGCAATGATGGATGGGTTGG 59.863 52.381 0.00 0.00 0.00 3.77
232 237 2.509964 AGCGGTCCCAAATAAATCCTCT 59.490 45.455 0.00 0.00 0.00 3.69
436 442 3.905968 ACCTTCCTTTTCTTTTTCGGGA 58.094 40.909 0.00 0.00 0.00 5.14
483 489 3.428045 CCAAATGGTGCGAGATTTCTTCC 60.428 47.826 0.00 0.00 0.00 3.46
556 824 1.172180 TTTCTGCAGCGGTTTCCTGG 61.172 55.000 9.47 0.00 0.00 4.45
742 1010 0.250727 AAAGCTGCGGTCTTGGCTAA 60.251 50.000 0.00 0.00 34.40 3.09
878 1146 3.192633 CCTTAAATTGGGAGGTTCCGTTG 59.807 47.826 0.00 0.00 37.43 4.10
933 1213 1.599518 ACCAAAATCGCGCAGGACA 60.600 52.632 8.75 0.00 0.00 4.02
940 1220 3.419915 CAGAAGATTCACCAAAATCGCG 58.580 45.455 0.00 0.00 40.00 5.87
943 1223 4.219288 ACCAGCAGAAGATTCACCAAAATC 59.781 41.667 0.00 0.00 36.16 2.17
950 1230 1.808945 CACCACCAGCAGAAGATTCAC 59.191 52.381 0.00 0.00 0.00 3.18
952 1232 1.271597 ACCACCACCAGCAGAAGATTC 60.272 52.381 0.00 0.00 0.00 2.52
954 1234 0.037303 CACCACCACCAGCAGAAGAT 59.963 55.000 0.00 0.00 0.00 2.40
955 1235 1.053835 TCACCACCACCAGCAGAAGA 61.054 55.000 0.00 0.00 0.00 2.87
956 1236 0.604780 CTCACCACCACCAGCAGAAG 60.605 60.000 0.00 0.00 0.00 2.85
958 1238 1.344953 AACTCACCACCACCAGCAGA 61.345 55.000 0.00 0.00 0.00 4.26
959 1239 0.466189 AAACTCACCACCACCAGCAG 60.466 55.000 0.00 0.00 0.00 4.24
960 1240 0.033601 AAAACTCACCACCACCAGCA 60.034 50.000 0.00 0.00 0.00 4.41
961 1241 0.385390 CAAAACTCACCACCACCAGC 59.615 55.000 0.00 0.00 0.00 4.85
963 1243 2.021723 GCTCAAAACTCACCACCACCA 61.022 52.381 0.00 0.00 0.00 4.17
964 1244 0.668535 GCTCAAAACTCACCACCACC 59.331 55.000 0.00 0.00 0.00 4.61
965 1245 1.680338 AGCTCAAAACTCACCACCAC 58.320 50.000 0.00 0.00 0.00 4.16
966 1246 2.023673 CAAGCTCAAAACTCACCACCA 58.976 47.619 0.00 0.00 0.00 4.17
967 1247 2.297701 TCAAGCTCAAAACTCACCACC 58.702 47.619 0.00 0.00 0.00 4.61
968 1248 4.574599 AATCAAGCTCAAAACTCACCAC 57.425 40.909 0.00 0.00 0.00 4.16
1091 1371 2.358003 GCAGCTCCTTGCACTCGT 60.358 61.111 0.00 0.00 45.94 4.18
1542 1828 1.671379 GAAGTGGGGGTTGTCTCGC 60.671 63.158 0.00 0.00 0.00 5.03
2048 2334 0.518636 CATCTGGTTGTTGCGTCCAG 59.481 55.000 4.30 4.30 46.94 3.86
2412 2698 2.796651 GAGCTGGGCTTGAATGCG 59.203 61.111 0.00 0.00 39.88 4.73
2911 3197 3.230134 CCCTGGACTGGAAGAGATCTAG 58.770 54.545 0.00 0.00 42.10 2.43
2964 3256 7.467623 CAAATATACTTCAGTGCAGGAAGAAC 58.532 38.462 26.49 0.00 43.46 3.01
2991 3283 7.552687 AGCAAAGAATGGTCGACATAAATCTAA 59.447 33.333 18.91 0.00 39.40 2.10
3141 3435 8.801299 TCTCCAATTTGCAGTTTTGTTCATATA 58.199 29.630 0.00 0.00 0.00 0.86
3211 3505 8.817100 CGATGCTACTGTATGAGTCAATAAAAA 58.183 33.333 0.00 0.00 35.96 1.94
3212 3506 8.194769 TCGATGCTACTGTATGAGTCAATAAAA 58.805 33.333 0.00 0.00 35.96 1.52
3213 3507 7.712797 TCGATGCTACTGTATGAGTCAATAAA 58.287 34.615 0.00 0.00 35.96 1.40
3216 3510 5.278709 CCTCGATGCTACTGTATGAGTCAAT 60.279 44.000 0.00 0.00 35.96 2.57
3217 3511 4.036852 CCTCGATGCTACTGTATGAGTCAA 59.963 45.833 0.00 0.00 35.96 3.18
3218 3512 3.565902 CCTCGATGCTACTGTATGAGTCA 59.434 47.826 0.00 0.00 35.96 3.41
3219 3513 3.057876 CCCTCGATGCTACTGTATGAGTC 60.058 52.174 0.00 0.00 35.96 3.36
3220 3514 2.887783 CCCTCGATGCTACTGTATGAGT 59.112 50.000 0.00 0.00 38.88 3.41
3221 3515 3.149981 TCCCTCGATGCTACTGTATGAG 58.850 50.000 0.00 0.00 0.00 2.90
3222 3516 3.223674 TCCCTCGATGCTACTGTATGA 57.776 47.619 0.00 0.00 0.00 2.15
3223 3517 4.459337 TGTATCCCTCGATGCTACTGTATG 59.541 45.833 0.00 0.00 32.69 2.39
3224 3518 4.663334 TGTATCCCTCGATGCTACTGTAT 58.337 43.478 0.00 0.00 32.69 2.29
3225 3519 4.094830 TGTATCCCTCGATGCTACTGTA 57.905 45.455 0.00 0.00 32.69 2.74
3226 3520 2.945456 TGTATCCCTCGATGCTACTGT 58.055 47.619 0.00 0.00 32.69 3.55
3227 3521 4.021981 TGATTGTATCCCTCGATGCTACTG 60.022 45.833 0.00 0.00 32.69 2.74
3228 3522 4.152647 TGATTGTATCCCTCGATGCTACT 58.847 43.478 0.00 0.00 32.69 2.57
3229 3523 4.521130 TGATTGTATCCCTCGATGCTAC 57.479 45.455 0.00 0.00 32.69 3.58
3230 3524 4.772100 TCATGATTGTATCCCTCGATGCTA 59.228 41.667 0.00 0.00 32.69 3.49
3231 3525 3.580022 TCATGATTGTATCCCTCGATGCT 59.420 43.478 0.00 0.00 32.69 3.79
3232 3526 3.930336 TCATGATTGTATCCCTCGATGC 58.070 45.455 0.00 0.00 0.00 3.91
3233 3527 5.144692 ACTCATGATTGTATCCCTCGATG 57.855 43.478 0.00 0.00 0.00 3.84
3234 3528 5.775195 TGTACTCATGATTGTATCCCTCGAT 59.225 40.000 0.00 0.00 0.00 3.59
3235 3529 5.009710 GTGTACTCATGATTGTATCCCTCGA 59.990 44.000 0.00 0.00 0.00 4.04
3236 3530 5.223382 GTGTACTCATGATTGTATCCCTCG 58.777 45.833 0.00 0.00 0.00 4.63
3237 3531 5.511545 GGGTGTACTCATGATTGTATCCCTC 60.512 48.000 19.48 3.60 35.22 4.30
3238 3532 4.348168 GGGTGTACTCATGATTGTATCCCT 59.652 45.833 19.48 0.00 35.22 4.20
3239 3533 4.642429 GGGTGTACTCATGATTGTATCCC 58.358 47.826 15.61 15.61 32.90 3.85
3240 3534 4.307432 CGGGTGTACTCATGATTGTATCC 58.693 47.826 0.00 3.80 0.00 2.59
3241 3535 4.307432 CCGGGTGTACTCATGATTGTATC 58.693 47.826 0.00 0.00 0.00 2.24
3242 3536 3.494398 GCCGGGTGTACTCATGATTGTAT 60.494 47.826 2.18 0.00 0.00 2.29
3243 3537 2.159014 GCCGGGTGTACTCATGATTGTA 60.159 50.000 2.18 0.00 0.00 2.41
3244 3538 1.406887 GCCGGGTGTACTCATGATTGT 60.407 52.381 2.18 0.00 0.00 2.71
3245 3539 1.299541 GCCGGGTGTACTCATGATTG 58.700 55.000 2.18 0.00 0.00 2.67
3246 3540 0.180406 GGCCGGGTGTACTCATGATT 59.820 55.000 2.18 0.00 0.00 2.57
3247 3541 0.691078 AGGCCGGGTGTACTCATGAT 60.691 55.000 2.18 0.00 0.00 2.45
3248 3542 1.305802 AGGCCGGGTGTACTCATGA 60.306 57.895 2.18 0.00 0.00 3.07
3249 3543 1.144057 GAGGCCGGGTGTACTCATG 59.856 63.158 2.18 0.00 0.00 3.07
3250 3544 1.001760 AGAGGCCGGGTGTACTCAT 59.998 57.895 2.18 0.00 32.52 2.90
3251 3545 1.982395 CAGAGGCCGGGTGTACTCA 60.982 63.158 2.18 0.00 32.52 3.41
3252 3546 2.893398 CAGAGGCCGGGTGTACTC 59.107 66.667 2.18 0.00 0.00 2.59
3253 3547 3.391382 GCAGAGGCCGGGTGTACT 61.391 66.667 2.18 0.00 0.00 2.73
3254 3548 1.682451 TATGCAGAGGCCGGGTGTAC 61.682 60.000 2.18 0.00 40.13 2.90
3255 3549 0.978667 TTATGCAGAGGCCGGGTGTA 60.979 55.000 2.18 0.00 40.13 2.90
3256 3550 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
3257 3551 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
3258 3552 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
3259 3553 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
3260 3554 2.325583 TTTAGTTATGCAGAGGCCGG 57.674 50.000 0.00 0.00 40.13 6.13
3261 3555 3.548818 GCATTTTAGTTATGCAGAGGCCG 60.549 47.826 0.00 0.00 45.93 6.13
3262 3556 3.969899 GCATTTTAGTTATGCAGAGGCC 58.030 45.455 0.00 0.00 45.93 5.19
3269 3563 3.859386 GGCTGTGTGCATTTTAGTTATGC 59.141 43.478 0.00 0.00 46.63 3.14
3270 3564 5.058149 TGGCTGTGTGCATTTTAGTTATG 57.942 39.130 0.00 0.00 45.15 1.90
3271 3565 4.380867 GCTGGCTGTGTGCATTTTAGTTAT 60.381 41.667 0.00 0.00 45.15 1.89
3272 3566 3.057596 GCTGGCTGTGTGCATTTTAGTTA 60.058 43.478 0.00 0.00 45.15 2.24
3273 3567 2.288395 GCTGGCTGTGTGCATTTTAGTT 60.288 45.455 0.00 0.00 45.15 2.24
3274 3568 1.270550 GCTGGCTGTGTGCATTTTAGT 59.729 47.619 0.00 0.00 45.15 2.24
3275 3569 1.270274 TGCTGGCTGTGTGCATTTTAG 59.730 47.619 0.00 0.00 45.15 1.85
3276 3570 1.000385 GTGCTGGCTGTGTGCATTTTA 60.000 47.619 0.00 0.00 45.15 1.52
3277 3571 0.249573 GTGCTGGCTGTGTGCATTTT 60.250 50.000 0.00 0.00 45.15 1.82
3278 3572 1.364901 GTGCTGGCTGTGTGCATTT 59.635 52.632 0.00 0.00 45.15 2.32
3279 3573 1.393487 TTGTGCTGGCTGTGTGCATT 61.393 50.000 0.00 0.00 45.15 3.56
3280 3574 1.829096 TTGTGCTGGCTGTGTGCAT 60.829 52.632 0.00 0.00 45.15 3.96
3281 3575 2.439883 TTGTGCTGGCTGTGTGCA 60.440 55.556 0.00 0.00 45.15 4.57
3282 3576 2.026590 GTTGTGCTGGCTGTGTGC 59.973 61.111 0.00 0.00 41.94 4.57
3283 3577 1.064621 GTGTTGTGCTGGCTGTGTG 59.935 57.895 0.00 0.00 0.00 3.82
3284 3578 1.378382 TGTGTTGTGCTGGCTGTGT 60.378 52.632 0.00 0.00 0.00 3.72
3285 3579 1.064621 GTGTGTTGTGCTGGCTGTG 59.935 57.895 0.00 0.00 0.00 3.66
3286 3580 1.378382 TGTGTGTTGTGCTGGCTGT 60.378 52.632 0.00 0.00 0.00 4.40
3287 3581 1.064621 GTGTGTGTTGTGCTGGCTG 59.935 57.895 0.00 0.00 0.00 4.85
3288 3582 1.378382 TGTGTGTGTTGTGCTGGCT 60.378 52.632 0.00 0.00 0.00 4.75
3289 3583 1.226660 GTGTGTGTGTTGTGCTGGC 60.227 57.895 0.00 0.00 0.00 4.85
3290 3584 0.179166 GTGTGTGTGTGTTGTGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
3291 3585 0.520847 TGTGTGTGTGTGTTGTGCTG 59.479 50.000 0.00 0.00 0.00 4.41
3292 3586 1.242989 TTGTGTGTGTGTGTTGTGCT 58.757 45.000 0.00 0.00 0.00 4.40
3293 3587 2.057503 TTTGTGTGTGTGTGTTGTGC 57.942 45.000 0.00 0.00 0.00 4.57
3294 3588 3.831112 TCATTTGTGTGTGTGTGTTGTG 58.169 40.909 0.00 0.00 0.00 3.33
3295 3589 4.157472 TGATCATTTGTGTGTGTGTGTTGT 59.843 37.500 0.00 0.00 0.00 3.32
3296 3590 4.500117 GTGATCATTTGTGTGTGTGTGTTG 59.500 41.667 0.00 0.00 0.00 3.33
3297 3591 4.671377 GTGATCATTTGTGTGTGTGTGTT 58.329 39.130 0.00 0.00 0.00 3.32
3298 3592 3.242706 CGTGATCATTTGTGTGTGTGTGT 60.243 43.478 0.00 0.00 0.00 3.72
3299 3593 3.290748 CGTGATCATTTGTGTGTGTGTG 58.709 45.455 0.00 0.00 0.00 3.82
3300 3594 2.286950 GCGTGATCATTTGTGTGTGTGT 60.287 45.455 0.00 0.00 0.00 3.72
3301 3595 2.309693 GCGTGATCATTTGTGTGTGTG 58.690 47.619 0.00 0.00 0.00 3.82
3302 3596 1.266718 GGCGTGATCATTTGTGTGTGT 59.733 47.619 0.00 0.00 0.00 3.72
3303 3597 1.725611 CGGCGTGATCATTTGTGTGTG 60.726 52.381 0.00 0.00 0.00 3.82
3304 3598 0.516877 CGGCGTGATCATTTGTGTGT 59.483 50.000 0.00 0.00 0.00 3.72
3305 3599 0.179192 CCGGCGTGATCATTTGTGTG 60.179 55.000 6.01 0.00 0.00 3.82
3306 3600 1.922135 GCCGGCGTGATCATTTGTGT 61.922 55.000 12.58 0.00 0.00 3.72
3307 3601 1.226379 GCCGGCGTGATCATTTGTG 60.226 57.895 12.58 0.00 0.00 3.33
3308 3602 1.240641 TTGCCGGCGTGATCATTTGT 61.241 50.000 23.90 0.00 0.00 2.83
3309 3603 0.109365 TTTGCCGGCGTGATCATTTG 60.109 50.000 23.90 0.00 0.00 2.32
3310 3604 0.171007 CTTTGCCGGCGTGATCATTT 59.829 50.000 23.90 0.00 0.00 2.32
3311 3605 1.656818 CCTTTGCCGGCGTGATCATT 61.657 55.000 23.90 0.00 0.00 2.57
3312 3606 2.114670 CCTTTGCCGGCGTGATCAT 61.115 57.895 23.90 0.00 0.00 2.45
3313 3607 2.745884 CCTTTGCCGGCGTGATCA 60.746 61.111 23.90 0.00 0.00 2.92
3314 3608 4.179579 GCCTTTGCCGGCGTGATC 62.180 66.667 23.90 7.02 40.79 2.92
3321 3615 0.388907 CATGACTTTGCCTTTGCCGG 60.389 55.000 0.00 0.00 36.33 6.13
3322 3616 1.010419 GCATGACTTTGCCTTTGCCG 61.010 55.000 0.00 0.00 36.60 5.69
3323 3617 0.033781 TGCATGACTTTGCCTTTGCC 59.966 50.000 0.00 0.00 42.06 4.52
3324 3618 1.868469 TTGCATGACTTTGCCTTTGC 58.132 45.000 0.00 0.00 42.06 3.68
3325 3619 3.492011 GTCTTTGCATGACTTTGCCTTTG 59.508 43.478 11.62 0.00 42.06 2.77
3326 3620 3.493176 GGTCTTTGCATGACTTTGCCTTT 60.493 43.478 16.48 0.00 42.06 3.11
3327 3621 2.036346 GGTCTTTGCATGACTTTGCCTT 59.964 45.455 16.48 0.00 42.06 4.35
3328 3622 1.615392 GGTCTTTGCATGACTTTGCCT 59.385 47.619 16.48 0.00 42.06 4.75
3329 3623 1.340889 TGGTCTTTGCATGACTTTGCC 59.659 47.619 16.48 4.37 42.06 4.52
3330 3624 2.798976 TGGTCTTTGCATGACTTTGC 57.201 45.000 16.48 4.62 43.07 3.68
3331 3625 3.492011 GCTTTGGTCTTTGCATGACTTTG 59.508 43.478 16.48 8.51 35.04 2.77
3332 3626 3.385755 AGCTTTGGTCTTTGCATGACTTT 59.614 39.130 16.48 0.00 35.04 2.66
3333 3627 2.961062 AGCTTTGGTCTTTGCATGACTT 59.039 40.909 16.48 0.00 35.04 3.01
3334 3628 2.590821 AGCTTTGGTCTTTGCATGACT 58.409 42.857 16.48 0.00 35.04 3.41
3335 3629 4.418392 CATAGCTTTGGTCTTTGCATGAC 58.582 43.478 10.74 10.74 0.00 3.06
3336 3630 3.119388 GCATAGCTTTGGTCTTTGCATGA 60.119 43.478 6.29 0.00 38.06 3.07
3337 3631 3.184541 GCATAGCTTTGGTCTTTGCATG 58.815 45.455 6.29 0.00 38.06 4.06
3338 3632 2.167075 GGCATAGCTTTGGTCTTTGCAT 59.833 45.455 6.29 0.00 39.29 3.96
3339 3633 1.545582 GGCATAGCTTTGGTCTTTGCA 59.454 47.619 6.29 0.00 39.29 4.08
3340 3634 1.821136 AGGCATAGCTTTGGTCTTTGC 59.179 47.619 6.29 0.00 37.64 3.68
3341 3635 3.629398 CCTAGGCATAGCTTTGGTCTTTG 59.371 47.826 6.29 0.00 0.00 2.77
3342 3636 3.891049 CCTAGGCATAGCTTTGGTCTTT 58.109 45.455 6.29 0.00 0.00 2.52
3343 3637 2.422093 GCCTAGGCATAGCTTTGGTCTT 60.422 50.000 29.33 0.00 41.49 3.01
3344 3638 1.141858 GCCTAGGCATAGCTTTGGTCT 59.858 52.381 29.33 0.00 41.49 3.85
3345 3639 1.598882 GCCTAGGCATAGCTTTGGTC 58.401 55.000 29.33 0.00 41.49 4.02
3346 3640 0.179045 CGCCTAGGCATAGCTTTGGT 60.179 55.000 32.47 0.00 42.06 3.67
3347 3641 0.886490 CCGCCTAGGCATAGCTTTGG 60.886 60.000 32.47 18.84 42.06 3.28
3348 3642 0.106708 TCCGCCTAGGCATAGCTTTG 59.893 55.000 32.47 13.80 42.06 2.77
3349 3643 0.106894 GTCCGCCTAGGCATAGCTTT 59.893 55.000 32.47 0.00 42.06 3.51
3350 3644 1.749033 GTCCGCCTAGGCATAGCTT 59.251 57.895 32.47 0.00 42.06 3.74
3351 3645 2.565645 CGTCCGCCTAGGCATAGCT 61.566 63.158 32.47 0.00 42.06 3.32
3352 3646 2.049063 CGTCCGCCTAGGCATAGC 60.049 66.667 32.47 17.63 42.06 2.97
3353 3647 0.039074 CTTCGTCCGCCTAGGCATAG 60.039 60.000 32.47 20.23 42.06 2.23
3354 3648 0.466739 TCTTCGTCCGCCTAGGCATA 60.467 55.000 32.47 17.37 42.06 3.14
3355 3649 1.327690 TTCTTCGTCCGCCTAGGCAT 61.328 55.000 32.47 0.00 42.06 4.40
3356 3650 1.537814 TTTCTTCGTCCGCCTAGGCA 61.538 55.000 32.47 12.45 42.06 4.75
3357 3651 0.390735 TTTTCTTCGTCCGCCTAGGC 60.391 55.000 24.75 24.75 40.77 3.93
3358 3652 1.203994 TCTTTTCTTCGTCCGCCTAGG 59.796 52.381 3.67 3.67 42.97 3.02
3359 3653 2.649331 TCTTTTCTTCGTCCGCCTAG 57.351 50.000 0.00 0.00 0.00 3.02
3360 3654 3.389925 TTTCTTTTCTTCGTCCGCCTA 57.610 42.857 0.00 0.00 0.00 3.93
3361 3655 2.249844 TTTCTTTTCTTCGTCCGCCT 57.750 45.000 0.00 0.00 0.00 5.52
3362 3656 3.343380 TTTTTCTTTTCTTCGTCCGCC 57.657 42.857 0.00 0.00 0.00 6.13
3381 3675 6.814146 TCGTTGTTTTCATTGCTTAGGTTTTT 59.186 30.769 0.00 0.00 0.00 1.94
3382 3676 6.334202 TCGTTGTTTTCATTGCTTAGGTTTT 58.666 32.000 0.00 0.00 0.00 2.43
3383 3677 5.897050 TCGTTGTTTTCATTGCTTAGGTTT 58.103 33.333 0.00 0.00 0.00 3.27
3384 3678 5.508200 TCGTTGTTTTCATTGCTTAGGTT 57.492 34.783 0.00 0.00 0.00 3.50
3385 3679 5.705609 ATCGTTGTTTTCATTGCTTAGGT 57.294 34.783 0.00 0.00 0.00 3.08
3386 3680 6.088085 GTCAATCGTTGTTTTCATTGCTTAGG 59.912 38.462 0.00 0.00 0.00 2.69
3387 3681 6.636447 TGTCAATCGTTGTTTTCATTGCTTAG 59.364 34.615 0.00 0.00 0.00 2.18
3388 3682 6.499172 TGTCAATCGTTGTTTTCATTGCTTA 58.501 32.000 0.00 0.00 0.00 3.09
3389 3683 5.347342 TGTCAATCGTTGTTTTCATTGCTT 58.653 33.333 0.00 0.00 0.00 3.91
3390 3684 4.930963 TGTCAATCGTTGTTTTCATTGCT 58.069 34.783 0.00 0.00 0.00 3.91
3391 3685 5.633996 TTGTCAATCGTTGTTTTCATTGC 57.366 34.783 0.00 0.00 0.00 3.56
3392 3686 7.164226 ACATTGTCAATCGTTGTTTTCATTG 57.836 32.000 0.00 0.00 0.00 2.82
3393 3687 7.918033 TGTACATTGTCAATCGTTGTTTTCATT 59.082 29.630 0.00 0.00 0.00 2.57
3394 3688 7.421599 TGTACATTGTCAATCGTTGTTTTCAT 58.578 30.769 0.00 0.00 0.00 2.57
3395 3689 6.786207 TGTACATTGTCAATCGTTGTTTTCA 58.214 32.000 0.00 0.00 0.00 2.69
3396 3690 7.543756 GTTGTACATTGTCAATCGTTGTTTTC 58.456 34.615 0.00 0.00 0.00 2.29
3397 3691 6.195613 CGTTGTACATTGTCAATCGTTGTTTT 59.804 34.615 0.00 0.00 0.00 2.43
3398 3692 5.679355 CGTTGTACATTGTCAATCGTTGTTT 59.321 36.000 0.00 0.00 0.00 2.83
3399 3693 5.201910 CGTTGTACATTGTCAATCGTTGTT 58.798 37.500 0.00 0.00 0.00 2.83
3400 3694 4.319190 CCGTTGTACATTGTCAATCGTTGT 60.319 41.667 0.00 0.00 0.00 3.32
3401 3695 4.148166 CCGTTGTACATTGTCAATCGTTG 58.852 43.478 0.00 0.00 0.00 4.10
3402 3696 3.810941 ACCGTTGTACATTGTCAATCGTT 59.189 39.130 0.00 0.00 0.00 3.85
3403 3697 3.185594 CACCGTTGTACATTGTCAATCGT 59.814 43.478 0.00 1.07 0.00 3.73
3404 3698 3.430556 TCACCGTTGTACATTGTCAATCG 59.569 43.478 0.00 5.23 0.00 3.34
3405 3699 4.378046 GGTCACCGTTGTACATTGTCAATC 60.378 45.833 0.00 0.00 0.00 2.67
3406 3700 3.500680 GGTCACCGTTGTACATTGTCAAT 59.499 43.478 0.00 0.00 0.00 2.57
3407 3701 2.873472 GGTCACCGTTGTACATTGTCAA 59.127 45.455 0.00 0.00 0.00 3.18
3408 3702 2.158943 TGGTCACCGTTGTACATTGTCA 60.159 45.455 0.00 0.00 0.00 3.58
3409 3703 2.485903 TGGTCACCGTTGTACATTGTC 58.514 47.619 0.00 0.00 0.00 3.18
3410 3704 2.623878 TGGTCACCGTTGTACATTGT 57.376 45.000 0.00 0.00 0.00 2.71
3411 3705 2.093625 CGATGGTCACCGTTGTACATTG 59.906 50.000 0.00 0.00 0.00 2.82
3412 3706 2.343101 CGATGGTCACCGTTGTACATT 58.657 47.619 0.00 0.00 0.00 2.71
3413 3707 1.404986 CCGATGGTCACCGTTGTACAT 60.405 52.381 2.34 0.00 0.00 2.29
3414 3708 0.038067 CCGATGGTCACCGTTGTACA 60.038 55.000 2.34 0.00 0.00 2.90
3415 3709 1.356527 GCCGATGGTCACCGTTGTAC 61.357 60.000 2.34 0.00 0.00 2.90
3416 3710 1.079681 GCCGATGGTCACCGTTGTA 60.080 57.895 2.34 0.00 0.00 2.41
3417 3711 2.358247 GCCGATGGTCACCGTTGT 60.358 61.111 2.34 0.00 0.00 3.32
3418 3712 3.124921 GGCCGATGGTCACCGTTG 61.125 66.667 0.00 0.00 0.00 4.10
3419 3713 4.404098 GGGCCGATGGTCACCGTT 62.404 66.667 0.00 0.00 0.00 4.44
3422 3716 4.489771 CTGGGGCCGATGGTCACC 62.490 72.222 0.00 0.00 23.22 4.02
3423 3717 3.682292 GACTGGGGCCGATGGTCAC 62.682 68.421 0.00 0.00 0.00 3.67
3424 3718 3.399181 GACTGGGGCCGATGGTCA 61.399 66.667 0.00 0.00 0.00 4.02
3425 3719 2.666596 GATGACTGGGGCCGATGGTC 62.667 65.000 0.00 3.21 0.00 4.02
3426 3720 2.692368 ATGACTGGGGCCGATGGT 60.692 61.111 0.00 0.00 0.00 3.55
3427 3721 2.111878 GATGACTGGGGCCGATGG 59.888 66.667 0.00 0.00 0.00 3.51
3428 3722 1.070445 GAGATGACTGGGGCCGATG 59.930 63.158 0.00 0.00 0.00 3.84
3429 3723 0.692419 AAGAGATGACTGGGGCCGAT 60.692 55.000 0.00 0.00 0.00 4.18
3430 3724 1.306141 AAGAGATGACTGGGGCCGA 60.306 57.895 0.00 0.00 0.00 5.54
3431 3725 1.153289 CAAGAGATGACTGGGGCCG 60.153 63.158 0.00 0.00 0.00 6.13
3432 3726 2.300996 TCAAGAGATGACTGGGGCC 58.699 57.895 0.00 0.00 31.50 5.80
3440 3734 7.495901 GGAGTCTTAATGATGTCAAGAGATGA 58.504 38.462 0.00 0.00 35.05 2.92
3441 3735 6.420306 CGGAGTCTTAATGATGTCAAGAGATG 59.580 42.308 0.00 0.00 0.00 2.90
3442 3736 6.322456 TCGGAGTCTTAATGATGTCAAGAGAT 59.678 38.462 0.00 0.00 0.00 2.75
3443 3737 5.652452 TCGGAGTCTTAATGATGTCAAGAGA 59.348 40.000 0.00 0.00 0.00 3.10
3444 3738 5.895928 TCGGAGTCTTAATGATGTCAAGAG 58.104 41.667 0.00 0.00 0.00 2.85
3445 3739 5.652452 TCTCGGAGTCTTAATGATGTCAAGA 59.348 40.000 4.69 0.00 0.00 3.02
3446 3740 5.895928 TCTCGGAGTCTTAATGATGTCAAG 58.104 41.667 4.69 0.00 0.00 3.02
3447 3741 5.914898 TCTCGGAGTCTTAATGATGTCAA 57.085 39.130 4.69 0.00 0.00 3.18
3448 3742 5.163509 CCTTCTCGGAGTCTTAATGATGTCA 60.164 44.000 4.69 0.00 33.16 3.58
3449 3743 5.285651 CCTTCTCGGAGTCTTAATGATGTC 58.714 45.833 4.69 0.00 33.16 3.06
3450 3744 4.100189 CCCTTCTCGGAGTCTTAATGATGT 59.900 45.833 4.69 0.00 33.16 3.06
3451 3745 4.100189 ACCCTTCTCGGAGTCTTAATGATG 59.900 45.833 4.69 0.00 33.16 3.07
3452 3746 4.290942 ACCCTTCTCGGAGTCTTAATGAT 58.709 43.478 4.69 0.00 33.16 2.45
3453 3747 3.709587 ACCCTTCTCGGAGTCTTAATGA 58.290 45.455 4.69 0.00 33.16 2.57
3454 3748 4.160626 AGAACCCTTCTCGGAGTCTTAATG 59.839 45.833 4.69 0.00 34.07 1.90
3455 3749 4.354662 AGAACCCTTCTCGGAGTCTTAAT 58.645 43.478 4.69 0.00 34.07 1.40
3456 3750 3.762823 GAGAACCCTTCTCGGAGTCTTAA 59.237 47.826 4.69 0.00 45.85 1.85
3457 3751 3.354467 GAGAACCCTTCTCGGAGTCTTA 58.646 50.000 4.69 0.00 45.85 2.10
3458 3752 2.172679 GAGAACCCTTCTCGGAGTCTT 58.827 52.381 4.69 0.00 45.85 3.01
3459 3753 1.842052 GAGAACCCTTCTCGGAGTCT 58.158 55.000 4.69 0.00 45.85 3.24
3467 3761 1.420138 TCGCTTTTGGAGAACCCTTCT 59.580 47.619 0.00 0.00 44.21 2.85
3468 3762 1.535896 GTCGCTTTTGGAGAACCCTTC 59.464 52.381 0.00 0.00 35.38 3.46
3469 3763 1.605753 GTCGCTTTTGGAGAACCCTT 58.394 50.000 0.00 0.00 35.38 3.95
3470 3764 0.602905 CGTCGCTTTTGGAGAACCCT 60.603 55.000 0.00 0.00 35.38 4.34
3471 3765 1.866925 CGTCGCTTTTGGAGAACCC 59.133 57.895 0.00 0.00 34.81 4.11
3472 3766 1.206831 GCGTCGCTTTTGGAGAACC 59.793 57.895 10.68 0.00 0.00 3.62
3473 3767 1.206831 GGCGTCGCTTTTGGAGAAC 59.793 57.895 18.11 0.00 0.00 3.01
3474 3768 0.949105 GAGGCGTCGCTTTTGGAGAA 60.949 55.000 18.11 0.00 0.00 2.87
3475 3769 1.374252 GAGGCGTCGCTTTTGGAGA 60.374 57.895 18.11 0.00 0.00 3.71
3476 3770 2.391389 GGAGGCGTCGCTTTTGGAG 61.391 63.158 18.11 0.00 0.00 3.86
3477 3771 2.358247 GGAGGCGTCGCTTTTGGA 60.358 61.111 18.11 0.00 0.00 3.53
3478 3772 2.258013 TTGGAGGCGTCGCTTTTGG 61.258 57.895 18.11 0.00 0.00 3.28
3479 3773 1.082104 GTTGGAGGCGTCGCTTTTG 60.082 57.895 18.11 0.00 0.00 2.44
3480 3774 1.098712 TTGTTGGAGGCGTCGCTTTT 61.099 50.000 18.11 3.03 0.00 2.27
3481 3775 1.507141 CTTGTTGGAGGCGTCGCTTT 61.507 55.000 18.11 5.80 0.00 3.51
3482 3776 1.961277 CTTGTTGGAGGCGTCGCTT 60.961 57.895 18.11 9.97 0.00 4.68
3483 3777 2.357517 CTTGTTGGAGGCGTCGCT 60.358 61.111 18.11 2.78 0.00 4.93
3484 3778 3.423154 CCTTGTTGGAGGCGTCGC 61.423 66.667 9.22 9.22 38.35 5.19
3485 3779 2.342279 TCCTTGTTGGAGGCGTCG 59.658 61.111 0.00 0.00 40.56 5.12
3492 3786 1.133407 GTGCGTTGTTTCCTTGTTGGA 59.867 47.619 0.00 0.00 44.51 3.53
3493 3787 1.135257 TGTGCGTTGTTTCCTTGTTGG 60.135 47.619 0.00 0.00 37.10 3.77
3494 3788 2.270275 TGTGCGTTGTTTCCTTGTTG 57.730 45.000 0.00 0.00 0.00 3.33
3495 3789 2.874849 CTTGTGCGTTGTTTCCTTGTT 58.125 42.857 0.00 0.00 0.00 2.83
3496 3790 1.469079 GCTTGTGCGTTGTTTCCTTGT 60.469 47.619 0.00 0.00 0.00 3.16
3497 3791 1.199624 GCTTGTGCGTTGTTTCCTTG 58.800 50.000 0.00 0.00 0.00 3.61
3498 3792 3.641031 GCTTGTGCGTTGTTTCCTT 57.359 47.368 0.00 0.00 0.00 3.36
3519 3813 3.427425 TTGGATTTGGCGACGGCG 61.427 61.111 17.16 6.12 41.24 6.46
3520 3814 2.178273 GTTGGATTTGGCGACGGC 59.822 61.111 15.43 15.43 38.90 5.68
3521 3815 1.969064 TGGTTGGATTTGGCGACGG 60.969 57.895 0.00 0.00 0.00 4.79
3522 3816 1.209127 GTGGTTGGATTTGGCGACG 59.791 57.895 0.00 0.00 0.00 5.12
3523 3817 1.175983 TGGTGGTTGGATTTGGCGAC 61.176 55.000 0.00 0.00 0.00 5.19
3524 3818 0.468214 TTGGTGGTTGGATTTGGCGA 60.468 50.000 0.00 0.00 0.00 5.54
3525 3819 0.038343 CTTGGTGGTTGGATTTGGCG 60.038 55.000 0.00 0.00 0.00 5.69
3526 3820 0.321346 CCTTGGTGGTTGGATTTGGC 59.679 55.000 0.00 0.00 0.00 4.52
3527 3821 0.975887 CCCTTGGTGGTTGGATTTGG 59.024 55.000 0.00 0.00 0.00 3.28
3528 3822 1.618343 GACCCTTGGTGGTTGGATTTG 59.382 52.381 0.00 0.00 39.24 2.32
3529 3823 1.821666 CGACCCTTGGTGGTTGGATTT 60.822 52.381 0.00 0.00 39.24 2.17
3530 3824 0.251165 CGACCCTTGGTGGTTGGATT 60.251 55.000 0.00 0.00 39.24 3.01
3531 3825 1.378762 CGACCCTTGGTGGTTGGAT 59.621 57.895 0.00 0.00 39.24 3.41
3532 3826 2.833227 CGACCCTTGGTGGTTGGA 59.167 61.111 0.00 0.00 39.24 3.53
3534 3828 2.983592 GCCGACCCTTGGTGGTTG 60.984 66.667 0.00 0.00 39.24 3.77
3535 3829 3.175710 AGCCGACCCTTGGTGGTT 61.176 61.111 0.00 0.00 39.24 3.67
3536 3830 3.637273 GAGCCGACCCTTGGTGGT 61.637 66.667 0.00 0.00 42.79 4.16
3537 3831 3.636231 TGAGCCGACCCTTGGTGG 61.636 66.667 0.00 0.00 35.25 4.61
3538 3832 2.358737 GTGAGCCGACCCTTGGTG 60.359 66.667 0.00 0.00 35.25 4.17
3539 3833 4.003788 CGTGAGCCGACCCTTGGT 62.004 66.667 0.00 0.00 39.56 3.67
3540 3834 4.760047 CCGTGAGCCGACCCTTGG 62.760 72.222 0.00 0.00 39.56 3.61
3541 3835 4.760047 CCCGTGAGCCGACCCTTG 62.760 72.222 0.00 0.00 39.56 3.61
3544 3838 3.837570 AAAACCCGTGAGCCGACCC 62.838 63.158 0.00 0.00 39.56 4.46
3545 3839 2.281276 AAAACCCGTGAGCCGACC 60.281 61.111 0.00 0.00 39.56 4.79
3546 3840 1.595929 TGAAAACCCGTGAGCCGAC 60.596 57.895 0.00 0.00 39.56 4.79
3547 3841 1.595929 GTGAAAACCCGTGAGCCGA 60.596 57.895 0.00 0.00 39.56 5.54
3548 3842 2.613506 GGTGAAAACCCGTGAGCCG 61.614 63.158 0.00 0.00 0.00 5.52
3549 3843 2.265904 GGGTGAAAACCCGTGAGCC 61.266 63.158 0.00 0.00 40.59 4.70
3550 3844 3.351450 GGGTGAAAACCCGTGAGC 58.649 61.111 0.00 0.00 40.59 4.26
3557 3851 1.981256 TGCTCTTCAGGGTGAAAACC 58.019 50.000 0.00 0.00 35.73 3.27
3558 3852 4.279420 AGATTTGCTCTTCAGGGTGAAAAC 59.721 41.667 0.00 0.00 35.73 2.43
3559 3853 4.279169 CAGATTTGCTCTTCAGGGTGAAAA 59.721 41.667 0.00 0.00 35.73 2.29
3560 3854 3.822735 CAGATTTGCTCTTCAGGGTGAAA 59.177 43.478 0.00 0.00 35.73 2.69
3561 3855 3.072915 TCAGATTTGCTCTTCAGGGTGAA 59.927 43.478 0.00 0.00 34.79 3.18
3562 3856 2.639347 TCAGATTTGCTCTTCAGGGTGA 59.361 45.455 0.00 0.00 29.16 4.02
3563 3857 3.008330 CTCAGATTTGCTCTTCAGGGTG 58.992 50.000 0.00 0.00 29.16 4.61
3564 3858 2.617532 GCTCAGATTTGCTCTTCAGGGT 60.618 50.000 0.00 0.00 29.16 4.34
3565 3859 2.015587 GCTCAGATTTGCTCTTCAGGG 58.984 52.381 0.00 0.00 29.16 4.45
3566 3860 2.708051 TGCTCAGATTTGCTCTTCAGG 58.292 47.619 0.00 0.00 29.16 3.86
3567 3861 4.215827 AGTTTGCTCAGATTTGCTCTTCAG 59.784 41.667 0.00 0.00 29.16 3.02
3568 3862 4.139786 AGTTTGCTCAGATTTGCTCTTCA 58.860 39.130 0.00 0.00 29.16 3.02
3569 3863 4.379290 GGAGTTTGCTCAGATTTGCTCTTC 60.379 45.833 0.00 0.00 43.37 2.87
3570 3864 3.505293 GGAGTTTGCTCAGATTTGCTCTT 59.495 43.478 0.00 0.00 43.37 2.85
3571 3865 3.080319 GGAGTTTGCTCAGATTTGCTCT 58.920 45.455 0.00 0.00 43.37 4.09
3572 3866 2.159599 CGGAGTTTGCTCAGATTTGCTC 60.160 50.000 0.00 0.00 43.37 4.26
3573 3867 1.808945 CGGAGTTTGCTCAGATTTGCT 59.191 47.619 0.00 0.00 43.37 3.91
3574 3868 1.806542 TCGGAGTTTGCTCAGATTTGC 59.193 47.619 0.00 0.00 43.37 3.68
3575 3869 2.159599 GCTCGGAGTTTGCTCAGATTTG 60.160 50.000 6.90 0.00 43.14 2.32
3576 3870 2.079925 GCTCGGAGTTTGCTCAGATTT 58.920 47.619 6.90 0.00 43.14 2.17
3577 3871 1.002430 TGCTCGGAGTTTGCTCAGATT 59.998 47.619 6.90 0.00 43.14 2.40
3578 3872 0.610174 TGCTCGGAGTTTGCTCAGAT 59.390 50.000 6.90 0.00 43.14 2.90
3579 3873 0.392706 TTGCTCGGAGTTTGCTCAGA 59.607 50.000 6.90 0.00 43.37 3.27
3580 3874 1.129998 CATTGCTCGGAGTTTGCTCAG 59.870 52.381 6.90 0.00 43.37 3.35
3581 3875 1.159285 CATTGCTCGGAGTTTGCTCA 58.841 50.000 6.90 0.00 43.37 4.26
3582 3876 0.179179 GCATTGCTCGGAGTTTGCTC 60.179 55.000 16.42 0.00 40.93 4.26
3583 3877 1.589716 GGCATTGCTCGGAGTTTGCT 61.590 55.000 20.28 0.00 0.00 3.91
3584 3878 1.153958 GGCATTGCTCGGAGTTTGC 60.154 57.895 8.82 15.78 0.00 3.68
3585 3879 1.135315 CGGCATTGCTCGGAGTTTG 59.865 57.895 8.82 3.60 0.00 2.93
3586 3880 1.298859 GACGGCATTGCTCGGAGTTT 61.299 55.000 19.00 3.02 0.00 2.66
3587 3881 1.741770 GACGGCATTGCTCGGAGTT 60.742 57.895 19.00 3.31 0.00 3.01
3588 3882 2.125512 GACGGCATTGCTCGGAGT 60.126 61.111 19.00 8.53 0.00 3.85
3589 3883 1.493950 GATGACGGCATTGCTCGGAG 61.494 60.000 4.56 0.00 34.11 4.63
3590 3884 1.521457 GATGACGGCATTGCTCGGA 60.521 57.895 4.56 9.13 34.11 4.55
3591 3885 1.769098 CTGATGACGGCATTGCTCGG 61.769 60.000 4.56 0.00 34.11 4.63
3592 3886 0.807275 TCTGATGACGGCATTGCTCG 60.807 55.000 4.56 12.55 34.11 5.03
3593 3887 0.935898 CTCTGATGACGGCATTGCTC 59.064 55.000 4.56 0.00 34.11 4.26
3594 3888 0.251354 ACTCTGATGACGGCATTGCT 59.749 50.000 4.56 0.00 34.11 3.91
3595 3889 1.939974 TACTCTGATGACGGCATTGC 58.060 50.000 4.56 0.00 34.11 3.56
3596 3890 2.282555 CGTTACTCTGATGACGGCATTG 59.717 50.000 4.56 1.42 34.11 2.82
3597 3891 2.540515 CGTTACTCTGATGACGGCATT 58.459 47.619 4.56 0.00 34.11 3.56
3598 3892 1.802880 GCGTTACTCTGATGACGGCAT 60.803 52.381 1.48 1.48 37.47 4.40
3599 3893 0.457853 GCGTTACTCTGATGACGGCA 60.458 55.000 0.00 0.00 36.14 5.69
3600 3894 2.288969 GCGTTACTCTGATGACGGC 58.711 57.895 8.82 0.00 36.14 5.68
3601 3895 0.456221 AGGCGTTACTCTGATGACGG 59.544 55.000 8.82 0.00 36.14 4.79
3602 3896 1.135373 ACAGGCGTTACTCTGATGACG 60.135 52.381 8.95 0.00 38.45 4.35
3603 3897 2.656560 ACAGGCGTTACTCTGATGAC 57.343 50.000 8.95 0.00 35.20 3.06
3604 3898 2.560981 TGAACAGGCGTTACTCTGATGA 59.439 45.455 8.95 0.00 34.75 2.92
3605 3899 2.959516 TGAACAGGCGTTACTCTGATG 58.040 47.619 8.95 0.00 34.75 3.07
3606 3900 3.678056 TTGAACAGGCGTTACTCTGAT 57.322 42.857 8.95 0.00 34.75 2.90
3607 3901 3.462483 TTTGAACAGGCGTTACTCTGA 57.538 42.857 8.95 0.00 34.75 3.27
3608 3902 3.498397 ACATTTGAACAGGCGTTACTCTG 59.502 43.478 2.12 2.12 34.75 3.35
3609 3903 3.740115 ACATTTGAACAGGCGTTACTCT 58.260 40.909 0.00 0.00 34.75 3.24
3610 3904 4.483476 AACATTTGAACAGGCGTTACTC 57.517 40.909 0.00 0.00 34.75 2.59
3611 3905 7.675962 TTATAACATTTGAACAGGCGTTACT 57.324 32.000 0.00 0.00 34.75 2.24
3614 3908 8.898761 TGATATTATAACATTTGAACAGGCGTT 58.101 29.630 0.00 0.00 38.33 4.84
3615 3909 8.445275 TGATATTATAACATTTGAACAGGCGT 57.555 30.769 0.00 0.00 0.00 5.68
3616 3910 8.017373 CCTGATATTATAACATTTGAACAGGCG 58.983 37.037 0.00 0.00 34.68 5.52
3617 3911 8.850156 ACCTGATATTATAACATTTGAACAGGC 58.150 33.333 0.00 0.00 42.19 4.85
3807 4363 3.070018 CAAGAACCAGAGAAGCGTCAAT 58.930 45.455 1.61 0.00 0.00 2.57
3860 4416 1.397390 TTCGTTATCCGCCTCTCCCC 61.397 60.000 0.00 0.00 36.19 4.81
3861 4417 0.680061 ATTCGTTATCCGCCTCTCCC 59.320 55.000 0.00 0.00 36.19 4.30
3862 4418 1.340248 TCATTCGTTATCCGCCTCTCC 59.660 52.381 0.00 0.00 36.19 3.71
3863 4419 2.034812 AGTCATTCGTTATCCGCCTCTC 59.965 50.000 0.00 0.00 36.19 3.20
3864 4420 2.032620 AGTCATTCGTTATCCGCCTCT 58.967 47.619 0.00 0.00 36.19 3.69
3865 4421 2.510768 AGTCATTCGTTATCCGCCTC 57.489 50.000 0.00 0.00 36.19 4.70
3866 4422 2.936498 CAAAGTCATTCGTTATCCGCCT 59.064 45.455 0.00 0.00 36.19 5.52
3867 4423 2.676342 ACAAAGTCATTCGTTATCCGCC 59.324 45.455 0.00 0.00 36.19 6.13
3868 4424 3.670203 CACAAAGTCATTCGTTATCCGC 58.330 45.455 0.00 0.00 36.19 5.54
3869 4425 3.370978 AGCACAAAGTCATTCGTTATCCG 59.629 43.478 0.00 0.00 38.13 4.18
3870 4426 4.631813 AGAGCACAAAGTCATTCGTTATCC 59.368 41.667 0.00 0.00 0.00 2.59
3871 4427 5.578727 AGAGAGCACAAAGTCATTCGTTATC 59.421 40.000 0.00 0.00 0.00 1.75
3872 4428 5.482908 AGAGAGCACAAAGTCATTCGTTAT 58.517 37.500 0.00 0.00 0.00 1.89
3873 4429 4.883083 AGAGAGCACAAAGTCATTCGTTA 58.117 39.130 0.00 0.00 0.00 3.18
3874 4430 3.733337 AGAGAGCACAAAGTCATTCGTT 58.267 40.909 0.00 0.00 0.00 3.85
3875 4431 3.393089 AGAGAGCACAAAGTCATTCGT 57.607 42.857 0.00 0.00 0.00 3.85
3876 4432 5.164233 TCTTAGAGAGCACAAAGTCATTCG 58.836 41.667 0.00 0.00 0.00 3.34
3877 4433 6.091986 CCTTCTTAGAGAGCACAAAGTCATTC 59.908 42.308 0.00 0.00 0.00 2.67
3878 4434 5.936956 CCTTCTTAGAGAGCACAAAGTCATT 59.063 40.000 0.00 0.00 0.00 2.57
3879 4435 5.486526 CCTTCTTAGAGAGCACAAAGTCAT 58.513 41.667 0.00 0.00 0.00 3.06
3880 4436 4.800914 GCCTTCTTAGAGAGCACAAAGTCA 60.801 45.833 1.46 0.00 0.00 3.41
3881 4437 3.682377 GCCTTCTTAGAGAGCACAAAGTC 59.318 47.826 1.46 0.00 0.00 3.01
3882 4438 3.326297 AGCCTTCTTAGAGAGCACAAAGT 59.674 43.478 8.01 0.00 0.00 2.66
3883 4439 3.683822 CAGCCTTCTTAGAGAGCACAAAG 59.316 47.826 8.01 0.00 0.00 2.77
3884 4440 3.071602 ACAGCCTTCTTAGAGAGCACAAA 59.928 43.478 8.01 0.00 0.00 2.83
3885 4441 2.634940 ACAGCCTTCTTAGAGAGCACAA 59.365 45.455 8.01 0.00 0.00 3.33
3886 4442 2.232452 GACAGCCTTCTTAGAGAGCACA 59.768 50.000 8.01 0.00 0.00 4.57
3887 4443 2.418060 GGACAGCCTTCTTAGAGAGCAC 60.418 54.545 8.01 0.00 0.00 4.40
3888 4444 1.827969 GGACAGCCTTCTTAGAGAGCA 59.172 52.381 8.01 0.00 0.00 4.26
3889 4445 1.138069 GGGACAGCCTTCTTAGAGAGC 59.862 57.143 0.00 0.00 0.00 4.09
3890 4446 1.407258 CGGGACAGCCTTCTTAGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
3891 4447 1.475403 CGGGACAGCCTTCTTAGAGA 58.525 55.000 0.00 0.00 0.00 3.10
3892 4448 0.461961 CCGGGACAGCCTTCTTAGAG 59.538 60.000 0.00 0.00 0.00 2.43
3893 4449 0.040646 TCCGGGACAGCCTTCTTAGA 59.959 55.000 0.00 0.00 0.00 2.10
3894 4450 1.069358 GATCCGGGACAGCCTTCTTAG 59.931 57.143 0.00 0.00 0.00 2.18
3895 4451 1.120530 GATCCGGGACAGCCTTCTTA 58.879 55.000 0.00 0.00 0.00 2.10
3896 4452 0.618968 AGATCCGGGACAGCCTTCTT 60.619 55.000 0.00 0.00 0.00 2.52
3897 4453 0.618968 AAGATCCGGGACAGCCTTCT 60.619 55.000 0.00 0.00 0.00 2.85
3898 4454 1.120530 TAAGATCCGGGACAGCCTTC 58.879 55.000 0.00 0.00 0.00 3.46
3899 4455 1.807814 ATAAGATCCGGGACAGCCTT 58.192 50.000 0.00 3.62 0.00 4.35
3900 4456 1.417890 CAATAAGATCCGGGACAGCCT 59.582 52.381 0.00 0.00 0.00 4.58
3901 4457 1.141053 ACAATAAGATCCGGGACAGCC 59.859 52.381 0.00 0.00 0.00 4.85
3902 4458 2.622064 ACAATAAGATCCGGGACAGC 57.378 50.000 0.00 0.00 0.00 4.40
3903 4459 6.752351 CGATATTACAATAAGATCCGGGACAG 59.248 42.308 0.00 0.00 0.00 3.51
3904 4460 6.209986 ACGATATTACAATAAGATCCGGGACA 59.790 38.462 0.00 0.00 0.00 4.02
3905 4461 6.628185 ACGATATTACAATAAGATCCGGGAC 58.372 40.000 0.00 0.00 0.00 4.46
3906 4462 6.434965 TGACGATATTACAATAAGATCCGGGA 59.565 38.462 0.00 0.00 0.00 5.14
3907 4463 6.627243 TGACGATATTACAATAAGATCCGGG 58.373 40.000 0.00 0.00 0.00 5.73
3908 4464 7.273598 CACTGACGATATTACAATAAGATCCGG 59.726 40.741 0.00 0.00 0.00 5.14
3909 4465 7.201359 GCACTGACGATATTACAATAAGATCCG 60.201 40.741 0.00 0.00 0.00 4.18
3910 4466 7.063544 GGCACTGACGATATTACAATAAGATCC 59.936 40.741 0.00 0.00 0.00 3.36
3911 4467 7.815068 AGGCACTGACGATATTACAATAAGATC 59.185 37.037 0.00 0.00 37.18 2.75
3912 4468 7.671302 AGGCACTGACGATATTACAATAAGAT 58.329 34.615 0.00 0.00 37.18 2.40
3913 4469 7.050970 AGGCACTGACGATATTACAATAAGA 57.949 36.000 0.00 0.00 37.18 2.10
3914 4470 7.715265 AAGGCACTGACGATATTACAATAAG 57.285 36.000 0.00 0.00 40.86 1.73
3915 4471 7.042992 CGAAAGGCACTGACGATATTACAATAA 60.043 37.037 0.00 0.00 40.86 1.40
3916 4472 6.419710 CGAAAGGCACTGACGATATTACAATA 59.580 38.462 0.00 0.00 40.86 1.90
3917 4473 5.234329 CGAAAGGCACTGACGATATTACAAT 59.766 40.000 0.00 0.00 40.86 2.71
3918 4474 4.565166 CGAAAGGCACTGACGATATTACAA 59.435 41.667 0.00 0.00 40.86 2.41
3919 4475 4.109766 CGAAAGGCACTGACGATATTACA 58.890 43.478 0.00 0.00 40.86 2.41
3920 4476 3.060473 GCGAAAGGCACTGACGATATTAC 60.060 47.826 0.00 0.00 40.86 1.89
3921 4477 3.120792 GCGAAAGGCACTGACGATATTA 58.879 45.455 0.00 0.00 40.86 0.98
3922 4478 1.933853 GCGAAAGGCACTGACGATATT 59.066 47.619 0.00 0.00 40.86 1.28
3923 4479 1.571919 GCGAAAGGCACTGACGATAT 58.428 50.000 0.00 0.00 40.86 1.63
3924 4480 3.044809 GCGAAAGGCACTGACGATA 57.955 52.632 0.00 0.00 40.86 2.92
3925 4481 3.876300 GCGAAAGGCACTGACGAT 58.124 55.556 0.00 0.00 40.86 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.