Multiple sequence alignment - TraesCS4D01G226500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G226500 chr4D 100.000 1893 0 0 902 2794 385727333 385729225 0.000000e+00 3496.0
1 TraesCS4D01G226500 chr4D 100.000 705 0 0 1 705 385726432 385727136 0.000000e+00 1303.0
2 TraesCS4D01G226500 chr4A 94.104 1272 51 11 904 2166 66934990 66936246 0.000000e+00 1912.0
3 TraesCS4D01G226500 chr4A 96.494 656 21 2 1 656 66934340 66934993 0.000000e+00 1083.0
4 TraesCS4D01G226500 chr4A 80.319 188 22 6 2173 2353 66975436 66975615 8.120000e-26 128.0
5 TraesCS4D01G226500 chr4B 94.541 1154 38 9 904 2042 472237359 472238502 0.000000e+00 1759.0
6 TraesCS4D01G226500 chr4B 88.889 666 42 17 1 650 472236707 472237356 0.000000e+00 791.0
7 TraesCS4D01G226500 chr4B 92.647 68 3 1 2112 2177 472265839 472265906 2.290000e-16 97.1
8 TraesCS4D01G226500 chr4B 83.810 105 9 4 2345 2449 472269755 472269851 2.960000e-15 93.5
9 TraesCS4D01G226500 chr4B 93.333 60 3 1 2666 2724 472270020 472270079 1.380000e-13 87.9
10 TraesCS4D01G226500 chr1D 84.559 136 13 5 2598 2726 12059594 12059728 8.120000e-26 128.0
11 TraesCS4D01G226500 chr2A 82.734 139 17 7 2593 2726 714631679 714631543 1.760000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G226500 chr4D 385726432 385729225 2793 False 2399.5 3496 100.000 1 2794 2 chr4D.!!$F1 2793
1 TraesCS4D01G226500 chr4A 66934340 66936246 1906 False 1497.5 1912 95.299 1 2166 2 chr4A.!!$F2 2165
2 TraesCS4D01G226500 chr4B 472236707 472238502 1795 False 1275.0 1759 91.715 1 2042 2 chr4B.!!$F1 2041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 688 0.03496 GCCCAGTCCTCCTCCTTTTC 60.035 60.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 2420 0.033601 TCCAGCCGTGGCCAATATTT 60.034 50.0 7.24 0.0 44.6 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 2.827604 ACATCAGTGAAGAACCGCG 58.172 52.632 0.00 0.00 0.00 6.46
199 200 0.377203 GAACCGCGAATGATCCAACC 59.623 55.000 8.23 0.00 0.00 3.77
268 269 4.358851 TCATTTCAAAAACGGAAGCACAG 58.641 39.130 0.00 0.00 0.00 3.66
326 327 0.612744 CCCGGGCATCCAAACAATTT 59.387 50.000 8.08 0.00 0.00 1.82
386 387 0.975544 GATATCGCGTTCATCGGACG 59.024 55.000 5.77 0.00 43.04 4.79
573 590 3.997064 CTCTTCCCGCCGAGCTGTG 62.997 68.421 0.00 0.00 0.00 3.66
594 611 1.974875 CATGAGCACCAGCCAGCAA 60.975 57.895 0.00 0.00 43.56 3.91
651 668 2.203001 CGGCCACACTGTCACACA 60.203 61.111 2.24 0.00 0.00 3.72
659 676 4.368391 CTGTCACACAGCCCAGTC 57.632 61.111 0.00 0.00 39.62 3.51
660 677 1.302033 CTGTCACACAGCCCAGTCC 60.302 63.158 0.00 0.00 39.62 3.85
661 678 1.762522 CTGTCACACAGCCCAGTCCT 61.763 60.000 0.00 0.00 39.62 3.85
662 679 1.004440 GTCACACAGCCCAGTCCTC 60.004 63.158 0.00 0.00 0.00 3.71
663 680 2.217038 TCACACAGCCCAGTCCTCC 61.217 63.158 0.00 0.00 0.00 4.30
664 681 2.205462 ACACAGCCCAGTCCTCCT 59.795 61.111 0.00 0.00 0.00 3.69
665 682 1.915769 ACACAGCCCAGTCCTCCTC 60.916 63.158 0.00 0.00 0.00 3.71
666 683 2.284995 ACAGCCCAGTCCTCCTCC 60.285 66.667 0.00 0.00 0.00 4.30
667 684 2.040278 CAGCCCAGTCCTCCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
668 685 1.614824 CAGCCCAGTCCTCCTCCTT 60.615 63.158 0.00 0.00 0.00 3.36
669 686 1.162085 AGCCCAGTCCTCCTCCTTT 59.838 57.895 0.00 0.00 0.00 3.11
670 687 0.476611 AGCCCAGTCCTCCTCCTTTT 60.477 55.000 0.00 0.00 0.00 2.27
671 688 0.034960 GCCCAGTCCTCCTCCTTTTC 60.035 60.000 0.00 0.00 0.00 2.29
672 689 1.662686 CCCAGTCCTCCTCCTTTTCT 58.337 55.000 0.00 0.00 0.00 2.52
673 690 2.834113 CCCAGTCCTCCTCCTTTTCTA 58.166 52.381 0.00 0.00 0.00 2.10
674 691 3.182152 CCCAGTCCTCCTCCTTTTCTAA 58.818 50.000 0.00 0.00 0.00 2.10
675 692 3.587506 CCCAGTCCTCCTCCTTTTCTAAA 59.412 47.826 0.00 0.00 0.00 1.85
676 693 4.042934 CCCAGTCCTCCTCCTTTTCTAAAA 59.957 45.833 0.00 0.00 0.00 1.52
677 694 5.457633 CCCAGTCCTCCTCCTTTTCTAAAAA 60.458 44.000 0.00 0.00 0.00 1.94
937 954 0.322277 ATGCACACCAGCCTCTTCAG 60.322 55.000 0.00 0.00 0.00 3.02
973 994 3.134804 ACCAGTGTTTCTTCTACTGCAGT 59.865 43.478 25.12 25.12 40.26 4.40
1111 1132 1.374758 CTCCGTCAAGTGCCTGGAC 60.375 63.158 0.00 0.83 31.48 4.02
1126 1147 2.122167 GGACTGCTCTCCCGACGAT 61.122 63.158 0.00 0.00 0.00 3.73
1147 1168 0.035725 TCAGTGCTGAAGATGCCCTG 60.036 55.000 0.00 0.00 37.28 4.45
1177 1198 2.030540 GTGGCATCGCTCCTATACGTTA 60.031 50.000 0.00 0.00 0.00 3.18
1178 1199 2.823747 TGGCATCGCTCCTATACGTTAT 59.176 45.455 0.00 0.00 0.00 1.89
1179 1200 3.179830 GGCATCGCTCCTATACGTTATG 58.820 50.000 0.00 0.00 0.00 1.90
1180 1201 3.179830 GCATCGCTCCTATACGTTATGG 58.820 50.000 0.00 0.00 0.00 2.74
1181 1202 3.119602 GCATCGCTCCTATACGTTATGGA 60.120 47.826 0.00 0.00 0.00 3.41
1182 1203 4.663166 CATCGCTCCTATACGTTATGGAG 58.337 47.826 19.52 19.52 46.38 3.86
1183 1204 3.748083 TCGCTCCTATACGTTATGGAGT 58.252 45.455 22.49 0.00 45.64 3.85
1184 1205 4.898320 TCGCTCCTATACGTTATGGAGTA 58.102 43.478 22.49 13.58 45.64 2.59
1185 1206 5.494724 TCGCTCCTATACGTTATGGAGTAT 58.505 41.667 22.49 1.38 45.64 2.12
1817 1849 4.450122 CTGCCGCGACACATGCAC 62.450 66.667 8.23 0.00 0.00 4.57
1886 1918 1.472276 CGTCAGGCGCTACGACATTC 61.472 60.000 20.43 0.00 41.55 2.67
1928 1960 5.861251 TGTTGTTTGTTGATTCAGTTGTCAC 59.139 36.000 0.00 0.00 0.00 3.67
2088 2127 3.613910 GCATTTGCGAACTGGTGGTTATT 60.614 43.478 0.00 0.00 38.41 1.40
2104 2143 4.531732 TGGTTATTGGACGGGTAGTACTTT 59.468 41.667 0.00 0.00 33.83 2.66
2105 2144 5.012975 TGGTTATTGGACGGGTAGTACTTTT 59.987 40.000 0.00 0.00 33.83 2.27
2134 2177 6.852420 AACTATCTTGTTGGCAGTAGAGTA 57.148 37.500 0.00 0.00 0.00 2.59
2160 2203 7.503902 AGAGCATCCAGAAAAGAAAAGTAAACT 59.496 33.333 0.00 0.00 33.66 2.66
2166 2209 7.998964 TCCAGAAAAGAAAAGTAAACTGAGGAT 59.001 33.333 0.00 0.00 0.00 3.24
2167 2210 8.293157 CCAGAAAAGAAAAGTAAACTGAGGATC 58.707 37.037 0.00 0.00 0.00 3.36
2168 2211 9.061435 CAGAAAAGAAAAGTAAACTGAGGATCT 57.939 33.333 0.00 0.00 34.92 2.75
2169 2212 9.278978 AGAAAAGAAAAGTAAACTGAGGATCTC 57.721 33.333 0.00 0.00 34.92 2.75
2170 2213 9.278978 GAAAAGAAAAGTAAACTGAGGATCTCT 57.721 33.333 0.00 0.00 34.92 3.10
2171 2214 8.840833 AAAGAAAAGTAAACTGAGGATCTCTC 57.159 34.615 0.00 0.00 42.74 3.20
2180 2223 3.319031 TGAGGATCTCTCATACAGGCA 57.681 47.619 9.14 0.00 46.71 4.75
2181 2224 3.229293 TGAGGATCTCTCATACAGGCAG 58.771 50.000 9.14 0.00 46.71 4.85
2182 2225 1.969923 AGGATCTCTCATACAGGCAGC 59.030 52.381 0.00 0.00 0.00 5.25
2183 2226 1.336702 GGATCTCTCATACAGGCAGCG 60.337 57.143 0.00 0.00 0.00 5.18
2184 2227 1.339610 GATCTCTCATACAGGCAGCGT 59.660 52.381 0.00 0.00 0.00 5.07
2185 2228 0.457443 TCTCTCATACAGGCAGCGTG 59.543 55.000 13.64 13.64 0.00 5.34
2186 2229 0.529337 CTCTCATACAGGCAGCGTGG 60.529 60.000 19.03 2.02 0.00 4.94
2187 2230 1.219124 CTCATACAGGCAGCGTGGT 59.781 57.895 19.03 7.57 0.00 4.16
2188 2231 0.391661 CTCATACAGGCAGCGTGGTT 60.392 55.000 19.03 3.33 0.00 3.67
2189 2232 0.036164 TCATACAGGCAGCGTGGTTT 59.964 50.000 19.03 1.17 0.00 3.27
2190 2233 0.881118 CATACAGGCAGCGTGGTTTT 59.119 50.000 19.03 0.81 0.00 2.43
2191 2234 0.881118 ATACAGGCAGCGTGGTTTTG 59.119 50.000 19.03 0.00 0.00 2.44
2192 2235 0.179043 TACAGGCAGCGTGGTTTTGA 60.179 50.000 19.03 0.00 0.00 2.69
2193 2236 1.008538 CAGGCAGCGTGGTTTTGAC 60.009 57.895 7.24 0.00 0.00 3.18
2194 2237 2.193536 AGGCAGCGTGGTTTTGACC 61.194 57.895 0.00 0.00 0.00 4.02
2195 2238 2.485795 GGCAGCGTGGTTTTGACCA 61.486 57.895 0.00 0.00 37.46 4.02
2196 2239 1.008538 GCAGCGTGGTTTTGACCAG 60.009 57.895 0.00 0.00 41.00 4.00
2197 2240 1.724582 GCAGCGTGGTTTTGACCAGT 61.725 55.000 0.00 0.00 41.00 4.00
2198 2241 0.029300 CAGCGTGGTTTTGACCAGTG 59.971 55.000 0.00 0.00 41.00 3.66
2199 2242 1.299089 GCGTGGTTTTGACCAGTGC 60.299 57.895 0.00 3.04 41.00 4.40
2200 2243 1.358759 CGTGGTTTTGACCAGTGCC 59.641 57.895 0.00 0.00 41.00 5.01
2201 2244 1.380403 CGTGGTTTTGACCAGTGCCA 61.380 55.000 0.00 0.00 41.00 4.92
2202 2245 0.385390 GTGGTTTTGACCAGTGCCAG 59.615 55.000 0.00 0.00 41.00 4.85
2203 2246 1.363807 GGTTTTGACCAGTGCCAGC 59.636 57.895 0.00 0.00 0.00 4.85
2204 2247 1.363807 GTTTTGACCAGTGCCAGCC 59.636 57.895 0.00 0.00 0.00 4.85
2205 2248 1.109323 GTTTTGACCAGTGCCAGCCT 61.109 55.000 0.00 0.00 0.00 4.58
2206 2249 1.108727 TTTTGACCAGTGCCAGCCTG 61.109 55.000 0.00 0.00 0.00 4.85
2207 2250 1.993701 TTTGACCAGTGCCAGCCTGA 61.994 55.000 0.00 0.00 31.38 3.86
2208 2251 1.782201 TTGACCAGTGCCAGCCTGAT 61.782 55.000 0.00 0.00 31.38 2.90
2209 2252 0.909133 TGACCAGTGCCAGCCTGATA 60.909 55.000 0.00 0.00 31.38 2.15
2210 2253 0.462759 GACCAGTGCCAGCCTGATAC 60.463 60.000 0.00 0.00 31.38 2.24
2211 2254 1.522355 CCAGTGCCAGCCTGATACG 60.522 63.158 0.00 0.00 31.38 3.06
2212 2255 2.176273 CAGTGCCAGCCTGATACGC 61.176 63.158 0.00 0.00 31.38 4.42
2213 2256 2.187946 GTGCCAGCCTGATACGCT 59.812 61.111 0.00 0.00 36.91 5.07
2214 2257 1.884926 GTGCCAGCCTGATACGCTC 60.885 63.158 0.00 0.00 33.17 5.03
2215 2258 2.060383 TGCCAGCCTGATACGCTCT 61.060 57.895 0.00 0.00 33.17 4.09
2216 2259 1.593750 GCCAGCCTGATACGCTCTG 60.594 63.158 0.00 0.00 33.17 3.35
2217 2260 1.819229 CCAGCCTGATACGCTCTGT 59.181 57.895 0.00 0.00 33.17 3.41
2218 2261 0.529337 CCAGCCTGATACGCTCTGTG 60.529 60.000 0.00 0.00 33.17 3.66
2219 2262 1.142748 AGCCTGATACGCTCTGTGC 59.857 57.895 0.00 0.00 38.57 4.57
2220 2263 1.142748 GCCTGATACGCTCTGTGCT 59.857 57.895 0.00 0.00 40.11 4.40
2221 2264 0.460987 GCCTGATACGCTCTGTGCTT 60.461 55.000 0.00 0.00 40.11 3.91
2222 2265 1.565305 CCTGATACGCTCTGTGCTTC 58.435 55.000 0.00 0.00 40.11 3.86
2223 2266 1.134995 CCTGATACGCTCTGTGCTTCA 60.135 52.381 0.00 0.64 40.11 3.02
2224 2267 2.610433 CTGATACGCTCTGTGCTTCAA 58.390 47.619 0.00 0.00 40.11 2.69
2225 2268 2.995939 CTGATACGCTCTGTGCTTCAAA 59.004 45.455 0.00 0.00 40.11 2.69
2226 2269 3.398406 TGATACGCTCTGTGCTTCAAAA 58.602 40.909 0.00 0.00 40.11 2.44
2227 2270 4.002982 TGATACGCTCTGTGCTTCAAAAT 58.997 39.130 0.00 0.00 40.11 1.82
2228 2271 5.175127 TGATACGCTCTGTGCTTCAAAATA 58.825 37.500 0.00 0.00 40.11 1.40
2229 2272 3.813529 ACGCTCTGTGCTTCAAAATAC 57.186 42.857 0.00 0.00 40.11 1.89
2230 2273 3.138304 ACGCTCTGTGCTTCAAAATACA 58.862 40.909 0.00 0.00 40.11 2.29
2231 2274 3.563808 ACGCTCTGTGCTTCAAAATACAA 59.436 39.130 0.00 0.00 40.11 2.41
2232 2275 4.153986 CGCTCTGTGCTTCAAAATACAAG 58.846 43.478 0.00 0.00 40.11 3.16
2233 2276 4.083855 CGCTCTGTGCTTCAAAATACAAGA 60.084 41.667 0.00 0.00 40.11 3.02
2234 2277 5.149977 GCTCTGTGCTTCAAAATACAAGAC 58.850 41.667 0.00 0.00 38.95 3.01
2235 2278 5.342806 TCTGTGCTTCAAAATACAAGACG 57.657 39.130 0.00 0.00 0.00 4.18
2236 2279 4.814234 TCTGTGCTTCAAAATACAAGACGT 59.186 37.500 0.00 0.00 0.00 4.34
2237 2280 5.050363 TCTGTGCTTCAAAATACAAGACGTC 60.050 40.000 7.70 7.70 0.00 4.34
2238 2281 4.814234 TGTGCTTCAAAATACAAGACGTCT 59.186 37.500 13.58 13.58 0.00 4.18
2239 2282 5.295787 TGTGCTTCAAAATACAAGACGTCTT 59.704 36.000 24.93 24.93 36.45 3.01
2240 2283 6.480651 TGTGCTTCAAAATACAAGACGTCTTA 59.519 34.615 29.28 16.42 34.28 2.10
2241 2284 6.790825 GTGCTTCAAAATACAAGACGTCTTAC 59.209 38.462 29.28 15.45 34.28 2.34
2242 2285 6.480651 TGCTTCAAAATACAAGACGTCTTACA 59.519 34.615 29.28 19.83 34.28 2.41
2243 2286 7.172532 TGCTTCAAAATACAAGACGTCTTACAT 59.827 33.333 29.28 21.07 34.28 2.29
2244 2287 8.015658 GCTTCAAAATACAAGACGTCTTACATT 58.984 33.333 29.28 24.84 34.28 2.71
2245 2288 9.878599 CTTCAAAATACAAGACGTCTTACATTT 57.121 29.630 29.28 28.09 33.57 2.32
2247 2290 9.658475 TCAAAATACAAGACGTCTTACATTTTG 57.342 29.630 39.67 39.67 44.77 2.44
2248 2291 9.658475 CAAAATACAAGACGTCTTACATTTTGA 57.342 29.630 40.76 23.41 45.30 2.69
2249 2292 9.878599 AAAATACAAGACGTCTTACATTTTGAG 57.121 29.630 33.95 22.83 37.26 3.02
2250 2293 8.827177 AATACAAGACGTCTTACATTTTGAGA 57.173 30.769 29.28 10.80 34.28 3.27
2251 2294 6.526566 ACAAGACGTCTTACATTTTGAGAC 57.473 37.500 29.28 0.00 37.13 3.36
2252 2295 6.046593 ACAAGACGTCTTACATTTTGAGACA 58.953 36.000 29.28 0.00 39.74 3.41
2253 2296 6.201044 ACAAGACGTCTTACATTTTGAGACAG 59.799 38.462 29.28 14.42 39.74 3.51
2254 2297 6.085555 AGACGTCTTACATTTTGAGACAGA 57.914 37.500 13.58 0.00 39.74 3.41
2255 2298 6.153067 AGACGTCTTACATTTTGAGACAGAG 58.847 40.000 13.58 0.00 39.74 3.35
2256 2299 5.844004 ACGTCTTACATTTTGAGACAGAGT 58.156 37.500 0.00 0.00 39.74 3.24
2257 2300 5.692204 ACGTCTTACATTTTGAGACAGAGTG 59.308 40.000 0.00 0.00 39.74 3.51
2258 2301 5.119279 CGTCTTACATTTTGAGACAGAGTGG 59.881 44.000 0.00 0.00 39.74 4.00
2259 2302 5.409826 GTCTTACATTTTGAGACAGAGTGGG 59.590 44.000 0.00 0.00 39.59 4.61
2260 2303 3.864789 ACATTTTGAGACAGAGTGGGT 57.135 42.857 0.00 0.00 0.00 4.51
2261 2304 4.974645 ACATTTTGAGACAGAGTGGGTA 57.025 40.909 0.00 0.00 0.00 3.69
2262 2305 5.505181 ACATTTTGAGACAGAGTGGGTAT 57.495 39.130 0.00 0.00 0.00 2.73
2263 2306 5.880901 ACATTTTGAGACAGAGTGGGTATT 58.119 37.500 0.00 0.00 0.00 1.89
2264 2307 6.306987 ACATTTTGAGACAGAGTGGGTATTT 58.693 36.000 0.00 0.00 0.00 1.40
2265 2308 7.458397 ACATTTTGAGACAGAGTGGGTATTTA 58.542 34.615 0.00 0.00 0.00 1.40
2266 2309 7.390718 ACATTTTGAGACAGAGTGGGTATTTAC 59.609 37.037 0.00 0.00 0.00 2.01
2267 2310 6.681729 TTTGAGACAGAGTGGGTATTTACT 57.318 37.500 0.00 0.00 0.00 2.24
2268 2311 5.661056 TGAGACAGAGTGGGTATTTACTG 57.339 43.478 0.00 0.00 0.00 2.74
2269 2312 5.084519 TGAGACAGAGTGGGTATTTACTGT 58.915 41.667 0.00 0.00 40.49 3.55
2270 2313 5.047306 TGAGACAGAGTGGGTATTTACTGTG 60.047 44.000 0.00 0.00 42.12 3.66
2273 2316 6.034161 ACAGAGTGGGTATTTACTGTGTAC 57.966 41.667 5.51 0.00 45.85 2.90
2274 2317 5.541101 ACAGAGTGGGTATTTACTGTGTACA 59.459 40.000 5.51 0.00 45.85 2.90
2275 2318 6.042322 ACAGAGTGGGTATTTACTGTGTACAA 59.958 38.462 0.00 0.00 45.85 2.41
2276 2319 6.367969 CAGAGTGGGTATTTACTGTGTACAAC 59.632 42.308 0.00 0.00 34.55 3.32
2277 2320 6.269307 AGAGTGGGTATTTACTGTGTACAACT 59.731 38.462 0.00 0.00 0.00 3.16
2278 2321 6.228258 AGTGGGTATTTACTGTGTACAACTG 58.772 40.000 0.00 0.00 0.00 3.16
2279 2322 4.998672 TGGGTATTTACTGTGTACAACTGC 59.001 41.667 0.00 0.00 0.00 4.40
2280 2323 4.998672 GGGTATTTACTGTGTACAACTGCA 59.001 41.667 0.00 0.00 0.00 4.41
2281 2324 5.106830 GGGTATTTACTGTGTACAACTGCAC 60.107 44.000 0.00 0.00 36.26 4.57
2282 2325 5.106830 GGTATTTACTGTGTACAACTGCACC 60.107 44.000 0.00 0.00 34.94 5.01
2283 2326 2.143008 TACTGTGTACAACTGCACCG 57.857 50.000 0.00 0.00 34.94 4.94
2284 2327 1.157870 ACTGTGTACAACTGCACCGC 61.158 55.000 0.00 0.00 34.94 5.68
2285 2328 1.153349 TGTGTACAACTGCACCGCA 60.153 52.632 0.00 0.00 36.92 5.69
2286 2329 1.278637 GTGTACAACTGCACCGCAC 59.721 57.895 0.00 0.00 33.79 5.34
2287 2330 2.241190 TGTACAACTGCACCGCACG 61.241 57.895 0.00 0.00 33.79 5.34
2288 2331 2.663520 TACAACTGCACCGCACGG 60.664 61.111 7.71 7.71 42.03 4.94
2293 2336 4.041917 CTGCACCGCACGGCATTT 62.042 61.111 9.43 0.00 39.65 2.32
2294 2337 3.556543 CTGCACCGCACGGCATTTT 62.557 57.895 9.43 0.00 39.65 1.82
2295 2338 3.105157 GCACCGCACGGCATTTTG 61.105 61.111 9.43 0.31 39.32 2.44
2296 2339 2.642129 CACCGCACGGCATTTTGA 59.358 55.556 9.43 0.00 39.32 2.69
2297 2340 1.212490 CACCGCACGGCATTTTGAT 59.788 52.632 9.43 0.00 39.32 2.57
2298 2341 1.072116 CACCGCACGGCATTTTGATG 61.072 55.000 9.43 0.00 39.32 3.07
2299 2342 1.516821 CCGCACGGCATTTTGATGG 60.517 57.895 0.00 0.00 0.00 3.51
2300 2343 2.160221 CGCACGGCATTTTGATGGC 61.160 57.895 3.15 3.15 42.85 4.40
2301 2344 1.079956 GCACGGCATTTTGATGGCA 60.080 52.632 12.47 0.00 46.09 4.92
2302 2345 1.353609 GCACGGCATTTTGATGGCAC 61.354 55.000 12.47 0.00 46.09 5.01
2303 2346 1.072116 CACGGCATTTTGATGGCACG 61.072 55.000 12.47 2.64 46.09 5.34
2304 2347 2.160221 CGGCATTTTGATGGCACGC 61.160 57.895 12.47 0.00 46.09 5.34
2305 2348 1.216178 GGCATTTTGATGGCACGCT 59.784 52.632 7.92 0.00 45.24 5.07
2306 2349 1.079875 GGCATTTTGATGGCACGCTG 61.080 55.000 7.92 0.00 45.24 5.18
2307 2350 1.689352 GCATTTTGATGGCACGCTGC 61.689 55.000 0.00 1.92 44.08 5.25
2316 2359 4.374702 GCACGCTGCCTTGACACG 62.375 66.667 0.00 0.00 37.42 4.49
2317 2360 3.716006 CACGCTGCCTTGACACGG 61.716 66.667 0.00 0.00 0.00 4.94
2318 2361 4.235762 ACGCTGCCTTGACACGGT 62.236 61.111 0.00 0.00 0.00 4.83
2319 2362 3.716006 CGCTGCCTTGACACGGTG 61.716 66.667 6.58 6.58 0.00 4.94
2320 2363 3.357079 GCTGCCTTGACACGGTGG 61.357 66.667 13.48 0.00 0.00 4.61
2321 2364 2.111043 CTGCCTTGACACGGTGGT 59.889 61.111 13.48 0.00 0.00 4.16
2322 2365 1.525995 CTGCCTTGACACGGTGGTT 60.526 57.895 13.48 0.00 0.00 3.67
2323 2366 1.507141 CTGCCTTGACACGGTGGTTC 61.507 60.000 13.48 2.41 0.00 3.62
2324 2367 1.227853 GCCTTGACACGGTGGTTCT 60.228 57.895 13.48 0.00 0.00 3.01
2325 2368 0.034337 GCCTTGACACGGTGGTTCTA 59.966 55.000 13.48 0.00 0.00 2.10
2326 2369 1.939838 GCCTTGACACGGTGGTTCTAG 60.940 57.143 13.48 7.95 0.00 2.43
2327 2370 1.616865 CCTTGACACGGTGGTTCTAGA 59.383 52.381 13.48 0.00 0.00 2.43
2328 2371 2.609737 CCTTGACACGGTGGTTCTAGAC 60.610 54.545 13.48 0.00 0.00 2.59
2329 2372 1.694844 TGACACGGTGGTTCTAGACA 58.305 50.000 13.48 0.00 0.00 3.41
2330 2373 2.244695 TGACACGGTGGTTCTAGACAT 58.755 47.619 13.48 0.00 0.00 3.06
2331 2374 2.230508 TGACACGGTGGTTCTAGACATC 59.769 50.000 13.48 0.00 0.00 3.06
2332 2375 2.230508 GACACGGTGGTTCTAGACATCA 59.769 50.000 13.48 0.00 0.00 3.07
2333 2376 2.631062 ACACGGTGGTTCTAGACATCAA 59.369 45.455 13.48 0.00 0.00 2.57
2334 2377 3.254060 CACGGTGGTTCTAGACATCAAG 58.746 50.000 0.00 0.00 0.00 3.02
2335 2378 2.233922 ACGGTGGTTCTAGACATCAAGG 59.766 50.000 0.00 0.00 0.00 3.61
2336 2379 2.233922 CGGTGGTTCTAGACATCAAGGT 59.766 50.000 0.00 0.00 0.00 3.50
2337 2380 3.306780 CGGTGGTTCTAGACATCAAGGTT 60.307 47.826 0.00 0.00 0.00 3.50
2338 2381 4.652822 GGTGGTTCTAGACATCAAGGTTT 58.347 43.478 0.00 0.00 0.00 3.27
2339 2382 5.070685 GGTGGTTCTAGACATCAAGGTTTT 58.929 41.667 0.00 0.00 0.00 2.43
2340 2383 6.235664 GGTGGTTCTAGACATCAAGGTTTTA 58.764 40.000 0.00 0.00 0.00 1.52
2341 2384 6.884836 GGTGGTTCTAGACATCAAGGTTTTAT 59.115 38.462 0.00 0.00 0.00 1.40
2342 2385 7.393515 GGTGGTTCTAGACATCAAGGTTTTATT 59.606 37.037 0.00 0.00 0.00 1.40
2343 2386 9.444600 GTGGTTCTAGACATCAAGGTTTTATTA 57.555 33.333 0.00 0.00 0.00 0.98
2349 2392 9.774742 CTAGACATCAAGGTTTTATTAAACAGC 57.225 33.333 9.35 0.00 44.37 4.40
2350 2393 8.409358 AGACATCAAGGTTTTATTAAACAGCT 57.591 30.769 9.35 0.00 44.37 4.24
2351 2394 9.515226 AGACATCAAGGTTTTATTAAACAGCTA 57.485 29.630 9.35 0.00 44.37 3.32
2357 2400 9.076596 CAAGGTTTTATTAAACAGCTAATCAGC 57.923 33.333 9.35 0.00 44.37 4.26
2366 2409 2.977700 GCTAATCAGCTGCGCTACA 58.022 52.632 9.47 0.00 44.93 2.74
2367 2410 1.290203 GCTAATCAGCTGCGCTACAA 58.710 50.000 9.47 0.00 44.93 2.41
2368 2411 1.260033 GCTAATCAGCTGCGCTACAAG 59.740 52.381 9.47 0.00 44.93 3.16
2369 2412 1.260033 CTAATCAGCTGCGCTACAAGC 59.740 52.381 9.47 9.47 36.40 4.01
2370 2413 1.372087 AATCAGCTGCGCTACAAGCC 61.372 55.000 9.47 0.00 38.18 4.35
2371 2414 2.249413 ATCAGCTGCGCTACAAGCCT 62.249 55.000 9.47 0.00 38.18 4.58
2372 2415 1.153568 CAGCTGCGCTACAAGCCTA 60.154 57.895 9.73 0.00 38.18 3.93
2373 2416 0.740868 CAGCTGCGCTACAAGCCTAA 60.741 55.000 9.73 0.00 38.18 2.69
2374 2417 0.036388 AGCTGCGCTACAAGCCTAAA 60.036 50.000 9.73 0.00 38.18 1.85
2375 2418 0.097150 GCTGCGCTACAAGCCTAAAC 59.903 55.000 9.73 0.00 38.18 2.01
2376 2419 0.727398 CTGCGCTACAAGCCTAAACC 59.273 55.000 9.73 0.00 38.18 3.27
2377 2420 0.035598 TGCGCTACAAGCCTAAACCA 59.964 50.000 9.73 0.00 38.18 3.67
2378 2421 1.161843 GCGCTACAAGCCTAAACCAA 58.838 50.000 0.00 0.00 38.18 3.67
2379 2422 1.538075 GCGCTACAAGCCTAAACCAAA 59.462 47.619 0.00 0.00 38.18 3.28
2380 2423 2.163613 GCGCTACAAGCCTAAACCAAAT 59.836 45.455 0.00 0.00 38.18 2.32
2381 2424 3.375922 GCGCTACAAGCCTAAACCAAATA 59.624 43.478 0.00 0.00 38.18 1.40
2382 2425 4.036380 GCGCTACAAGCCTAAACCAAATAT 59.964 41.667 0.00 0.00 38.18 1.28
2383 2426 5.449999 GCGCTACAAGCCTAAACCAAATATT 60.450 40.000 0.00 0.00 38.18 1.28
2384 2427 5.971202 CGCTACAAGCCTAAACCAAATATTG 59.029 40.000 0.00 0.00 38.18 1.90
2385 2428 6.273071 GCTACAAGCCTAAACCAAATATTGG 58.727 40.000 7.56 7.56 45.61 3.16
2386 2429 7.174932 GCTACAAGCCTAAACCAAATATTGGC 61.175 42.308 9.00 3.17 44.68 4.52
2387 2430 9.972038 GCTACAAGCCTAAACCAAATATTGGCC 62.972 44.444 9.00 0.00 44.68 5.36
2393 2436 2.503775 CCAAATATTGGCCACGGCT 58.496 52.632 3.88 0.00 45.17 5.52
2394 2437 0.102844 CCAAATATTGGCCACGGCTG 59.897 55.000 3.88 0.00 45.17 4.85
2395 2438 0.102844 CAAATATTGGCCACGGCTGG 59.897 55.000 3.88 0.00 41.60 4.85
2396 2439 0.033601 AAATATTGGCCACGGCTGGA 60.034 50.000 3.88 0.00 40.55 3.86
2397 2440 0.033601 AATATTGGCCACGGCTGGAA 60.034 50.000 3.88 0.00 40.55 3.53
2398 2441 0.185901 ATATTGGCCACGGCTGGAAT 59.814 50.000 3.88 0.00 40.55 3.01
2399 2442 0.751277 TATTGGCCACGGCTGGAATG 60.751 55.000 3.88 0.00 40.55 2.67
2400 2443 2.497792 ATTGGCCACGGCTGGAATGA 62.498 55.000 3.88 0.00 40.55 2.57
2401 2444 3.134127 GGCCACGGCTGGAATGAC 61.134 66.667 8.20 0.00 40.55 3.06
2402 2445 2.359850 GCCACGGCTGGAATGACA 60.360 61.111 0.00 0.00 40.55 3.58
2403 2446 2.401766 GCCACGGCTGGAATGACAG 61.402 63.158 0.00 0.00 40.55 3.51
2404 2447 1.746615 CCACGGCTGGAATGACAGG 60.747 63.158 0.00 0.00 40.55 4.00
2408 2451 3.512516 GCTGGAATGACAGGCCGC 61.513 66.667 0.00 0.00 38.90 6.53
2409 2452 2.046023 CTGGAATGACAGGCCGCA 60.046 61.111 0.00 0.00 34.84 5.69
2410 2453 1.675310 CTGGAATGACAGGCCGCAA 60.675 57.895 0.00 0.00 34.84 4.85
2411 2454 1.651240 CTGGAATGACAGGCCGCAAG 61.651 60.000 0.00 0.00 34.84 4.01
2425 2468 2.634982 CGCAAGGCAATTAAAGAGCA 57.365 45.000 0.00 0.00 0.00 4.26
2426 2469 2.253603 CGCAAGGCAATTAAAGAGCAC 58.746 47.619 0.00 0.00 0.00 4.40
2427 2470 2.095059 CGCAAGGCAATTAAAGAGCACT 60.095 45.455 0.00 0.00 0.00 4.40
2428 2471 3.612479 CGCAAGGCAATTAAAGAGCACTT 60.612 43.478 0.00 0.00 38.05 3.16
2429 2472 4.309933 GCAAGGCAATTAAAGAGCACTTT 58.690 39.130 13.73 13.73 46.36 2.66
2430 2473 4.751600 GCAAGGCAATTAAAGAGCACTTTT 59.248 37.500 14.43 0.12 42.79 2.27
2431 2474 5.925969 GCAAGGCAATTAAAGAGCACTTTTA 59.074 36.000 14.43 6.12 42.79 1.52
2432 2475 6.591448 GCAAGGCAATTAAAGAGCACTTTTAT 59.409 34.615 14.43 8.27 42.79 1.40
2433 2476 7.201470 GCAAGGCAATTAAAGAGCACTTTTATC 60.201 37.037 14.43 0.98 42.79 1.75
2434 2477 7.466746 AGGCAATTAAAGAGCACTTTTATCA 57.533 32.000 14.43 0.00 42.79 2.15
2435 2478 7.895759 AGGCAATTAAAGAGCACTTTTATCAA 58.104 30.769 14.43 3.48 42.79 2.57
2436 2479 8.367156 AGGCAATTAAAGAGCACTTTTATCAAA 58.633 29.630 14.43 3.12 42.79 2.69
2437 2480 8.650714 GGCAATTAAAGAGCACTTTTATCAAAG 58.349 33.333 14.43 0.00 42.79 2.77
2438 2481 8.164790 GCAATTAAAGAGCACTTTTATCAAAGC 58.835 33.333 14.43 9.50 42.79 3.51
2439 2482 8.650714 CAATTAAAGAGCACTTTTATCAAAGCC 58.349 33.333 14.43 0.00 42.79 4.35
2440 2483 7.524717 TTAAAGAGCACTTTTATCAAAGCCT 57.475 32.000 14.43 0.00 42.79 4.58
2441 2484 8.630054 TTAAAGAGCACTTTTATCAAAGCCTA 57.370 30.769 14.43 0.00 42.79 3.93
2442 2485 7.709149 AAAGAGCACTTTTATCAAAGCCTAT 57.291 32.000 3.03 0.00 42.79 2.57
2443 2486 6.690194 AGAGCACTTTTATCAAAGCCTATG 57.310 37.500 0.00 0.00 43.03 2.23
2444 2487 6.183347 AGAGCACTTTTATCAAAGCCTATGT 58.817 36.000 0.00 0.00 43.03 2.29
2445 2488 6.660949 AGAGCACTTTTATCAAAGCCTATGTT 59.339 34.615 0.00 0.00 43.03 2.71
2446 2489 7.829211 AGAGCACTTTTATCAAAGCCTATGTTA 59.171 33.333 0.00 0.00 43.03 2.41
2447 2490 7.762382 AGCACTTTTATCAAAGCCTATGTTAC 58.238 34.615 0.00 0.00 43.03 2.50
2448 2491 7.611855 AGCACTTTTATCAAAGCCTATGTTACT 59.388 33.333 0.00 0.00 43.03 2.24
2449 2492 7.910683 GCACTTTTATCAAAGCCTATGTTACTC 59.089 37.037 0.00 0.00 43.03 2.59
2450 2493 9.167311 CACTTTTATCAAAGCCTATGTTACTCT 57.833 33.333 0.00 0.00 43.03 3.24
2451 2494 9.167311 ACTTTTATCAAAGCCTATGTTACTCTG 57.833 33.333 0.00 0.00 43.03 3.35
2452 2495 8.506168 TTTTATCAAAGCCTATGTTACTCTGG 57.494 34.615 0.00 0.00 0.00 3.86
2453 2496 5.957771 ATCAAAGCCTATGTTACTCTGGA 57.042 39.130 0.00 0.00 0.00 3.86
2454 2497 5.957771 TCAAAGCCTATGTTACTCTGGAT 57.042 39.130 0.00 0.00 0.00 3.41
2455 2498 6.313519 TCAAAGCCTATGTTACTCTGGATT 57.686 37.500 0.00 0.00 0.00 3.01
2456 2499 6.721318 TCAAAGCCTATGTTACTCTGGATTT 58.279 36.000 0.00 0.00 36.94 2.17
2457 2500 7.175104 TCAAAGCCTATGTTACTCTGGATTTT 58.825 34.615 0.00 0.00 34.70 1.82
2458 2501 7.121168 TCAAAGCCTATGTTACTCTGGATTTTG 59.879 37.037 0.00 0.00 34.70 2.44
2459 2502 6.067217 AGCCTATGTTACTCTGGATTTTGT 57.933 37.500 0.00 0.00 0.00 2.83
2460 2503 5.882557 AGCCTATGTTACTCTGGATTTTGTG 59.117 40.000 0.00 0.00 0.00 3.33
2461 2504 5.449177 GCCTATGTTACTCTGGATTTTGTGC 60.449 44.000 0.00 0.00 0.00 4.57
2462 2505 5.647658 CCTATGTTACTCTGGATTTTGTGCA 59.352 40.000 0.00 0.00 0.00 4.57
2463 2506 6.150976 CCTATGTTACTCTGGATTTTGTGCAA 59.849 38.462 0.00 0.00 0.00 4.08
2464 2507 5.181690 TGTTACTCTGGATTTTGTGCAAC 57.818 39.130 0.00 0.00 37.35 4.17
2465 2508 4.887071 TGTTACTCTGGATTTTGTGCAACT 59.113 37.500 0.00 0.00 38.04 3.16
2466 2509 6.058833 TGTTACTCTGGATTTTGTGCAACTA 58.941 36.000 0.00 0.00 38.04 2.24
2467 2510 6.204688 TGTTACTCTGGATTTTGTGCAACTAG 59.795 38.462 0.00 0.00 38.04 2.57
2468 2511 4.718961 ACTCTGGATTTTGTGCAACTAGT 58.281 39.130 0.00 0.00 38.04 2.57
2469 2512 5.133221 ACTCTGGATTTTGTGCAACTAGTT 58.867 37.500 1.12 1.12 38.04 2.24
2470 2513 5.009010 ACTCTGGATTTTGTGCAACTAGTTG 59.991 40.000 27.85 27.85 43.14 3.16
2471 2514 4.887071 TCTGGATTTTGTGCAACTAGTTGT 59.113 37.500 30.90 13.78 42.31 3.32
2472 2515 5.008613 TCTGGATTTTGTGCAACTAGTTGTC 59.991 40.000 30.90 23.82 42.31 3.18
2473 2516 4.037446 TGGATTTTGTGCAACTAGTTGTCC 59.963 41.667 30.90 26.46 42.31 4.02
2474 2517 3.684103 TTTTGTGCAACTAGTTGTCCG 57.316 42.857 30.90 11.27 42.31 4.79
2475 2518 2.319136 TTGTGCAACTAGTTGTCCGT 57.681 45.000 30.90 0.00 42.31 4.69
2476 2519 3.455990 TTGTGCAACTAGTTGTCCGTA 57.544 42.857 30.90 14.34 42.31 4.02
2477 2520 2.746269 TGTGCAACTAGTTGTCCGTAC 58.254 47.619 30.90 22.03 42.31 3.67
2478 2521 1.717645 GTGCAACTAGTTGTCCGTACG 59.282 52.381 30.90 8.69 42.31 3.67
2479 2522 1.337703 TGCAACTAGTTGTCCGTACGT 59.662 47.619 30.90 0.00 42.31 3.57
2480 2523 1.717645 GCAACTAGTTGTCCGTACGTG 59.282 52.381 30.90 8.29 42.31 4.49
2481 2524 1.717645 CAACTAGTTGTCCGTACGTGC 59.282 52.381 24.70 6.93 35.92 5.34
2482 2525 0.110056 ACTAGTTGTCCGTACGTGCG 60.110 55.000 19.61 19.61 0.00 5.34
2489 2532 2.883730 CCGTACGTGCGGTCCATG 60.884 66.667 33.28 9.98 46.11 3.66
2490 2533 2.126228 CGTACGTGCGGTCCATGT 60.126 61.111 18.81 0.00 45.39 3.21
2491 2534 1.735198 CGTACGTGCGGTCCATGTT 60.735 57.895 18.81 0.00 40.77 2.71
2492 2535 1.680105 CGTACGTGCGGTCCATGTTC 61.680 60.000 18.81 0.00 40.77 3.18
2493 2536 0.389426 GTACGTGCGGTCCATGTTCT 60.389 55.000 0.00 0.00 40.77 3.01
2494 2537 1.135315 GTACGTGCGGTCCATGTTCTA 60.135 52.381 0.00 0.00 40.77 2.10
2495 2538 0.535335 ACGTGCGGTCCATGTTCTAT 59.465 50.000 0.00 0.00 40.77 1.98
2496 2539 1.209128 CGTGCGGTCCATGTTCTATC 58.791 55.000 0.00 0.00 0.00 2.08
2497 2540 1.202417 CGTGCGGTCCATGTTCTATCT 60.202 52.381 0.00 0.00 0.00 1.98
2498 2541 2.738643 CGTGCGGTCCATGTTCTATCTT 60.739 50.000 0.00 0.00 0.00 2.40
2499 2542 3.270877 GTGCGGTCCATGTTCTATCTTT 58.729 45.455 0.00 0.00 0.00 2.52
2500 2543 3.689649 GTGCGGTCCATGTTCTATCTTTT 59.310 43.478 0.00 0.00 0.00 2.27
2501 2544 4.156008 GTGCGGTCCATGTTCTATCTTTTT 59.844 41.667 0.00 0.00 0.00 1.94
2502 2545 5.353123 GTGCGGTCCATGTTCTATCTTTTTA 59.647 40.000 0.00 0.00 0.00 1.52
2503 2546 6.038271 GTGCGGTCCATGTTCTATCTTTTTAT 59.962 38.462 0.00 0.00 0.00 1.40
2504 2547 6.601613 TGCGGTCCATGTTCTATCTTTTTATT 59.398 34.615 0.00 0.00 0.00 1.40
2505 2548 7.122055 TGCGGTCCATGTTCTATCTTTTTATTT 59.878 33.333 0.00 0.00 0.00 1.40
2506 2549 7.973944 GCGGTCCATGTTCTATCTTTTTATTTT 59.026 33.333 0.00 0.00 0.00 1.82
2507 2550 9.855021 CGGTCCATGTTCTATCTTTTTATTTTT 57.145 29.630 0.00 0.00 0.00 1.94
2577 2620 9.846248 GGAATAATTCATGGATGTTAATAGTGC 57.154 33.333 0.00 0.00 0.00 4.40
2582 2625 9.578576 AATTCATGGATGTTAATAGTGCTATGT 57.421 29.630 0.00 0.00 0.00 2.29
2583 2626 8.607441 TTCATGGATGTTAATAGTGCTATGTC 57.393 34.615 0.00 0.00 0.00 3.06
2584 2627 7.734942 TCATGGATGTTAATAGTGCTATGTCA 58.265 34.615 0.00 0.00 0.00 3.58
2585 2628 8.377799 TCATGGATGTTAATAGTGCTATGTCAT 58.622 33.333 0.00 0.00 0.00 3.06
2586 2629 7.967890 TGGATGTTAATAGTGCTATGTCATG 57.032 36.000 0.00 0.00 0.00 3.07
2587 2630 7.508687 TGGATGTTAATAGTGCTATGTCATGT 58.491 34.615 0.00 0.00 0.00 3.21
2588 2631 7.442062 TGGATGTTAATAGTGCTATGTCATGTG 59.558 37.037 0.00 0.00 0.00 3.21
2589 2632 6.603237 TGTTAATAGTGCTATGTCATGTGC 57.397 37.500 0.00 0.81 0.00 4.57
2590 2633 6.112058 TGTTAATAGTGCTATGTCATGTGCA 58.888 36.000 10.13 10.13 0.00 4.57
2595 2638 2.781923 TGCTATGTCATGTGCACTTGT 58.218 42.857 26.47 14.02 0.00 3.16
2596 2639 3.936564 TGCTATGTCATGTGCACTTGTA 58.063 40.909 26.47 18.90 0.00 2.41
2597 2640 4.322567 TGCTATGTCATGTGCACTTGTAA 58.677 39.130 26.47 18.22 0.00 2.41
2598 2641 4.759183 TGCTATGTCATGTGCACTTGTAAA 59.241 37.500 26.47 16.21 0.00 2.01
2599 2642 5.240403 TGCTATGTCATGTGCACTTGTAAAA 59.760 36.000 26.47 14.23 0.00 1.52
2600 2643 5.569059 GCTATGTCATGTGCACTTGTAAAAC 59.431 40.000 26.47 19.19 0.00 2.43
2601 2644 5.772825 ATGTCATGTGCACTTGTAAAACT 57.227 34.783 26.47 9.33 0.00 2.66
2602 2645 6.875948 ATGTCATGTGCACTTGTAAAACTA 57.124 33.333 26.47 8.00 0.00 2.24
2603 2646 6.299023 TGTCATGTGCACTTGTAAAACTAG 57.701 37.500 26.47 4.07 0.00 2.57
2604 2647 6.052360 TGTCATGTGCACTTGTAAAACTAGA 58.948 36.000 26.47 6.80 0.00 2.43
2605 2648 6.540551 TGTCATGTGCACTTGTAAAACTAGAA 59.459 34.615 26.47 6.09 0.00 2.10
2606 2649 7.066404 TGTCATGTGCACTTGTAAAACTAGAAA 59.934 33.333 26.47 5.64 0.00 2.52
2607 2650 7.913297 GTCATGTGCACTTGTAAAACTAGAAAA 59.087 33.333 26.47 5.46 0.00 2.29
2608 2651 8.629158 TCATGTGCACTTGTAAAACTAGAAAAT 58.371 29.630 26.47 1.10 0.00 1.82
2609 2652 8.693504 CATGTGCACTTGTAAAACTAGAAAATG 58.306 33.333 21.36 6.10 0.00 2.32
2610 2653 6.695278 TGTGCACTTGTAAAACTAGAAAATGC 59.305 34.615 19.41 0.00 0.00 3.56
2611 2654 6.143919 GTGCACTTGTAAAACTAGAAAATGCC 59.856 38.462 10.32 0.00 0.00 4.40
2612 2655 5.633601 GCACTTGTAAAACTAGAAAATGCCC 59.366 40.000 0.00 0.00 0.00 5.36
2613 2656 6.156519 CACTTGTAAAACTAGAAAATGCCCC 58.843 40.000 0.00 0.00 0.00 5.80
2614 2657 5.048294 ACTTGTAAAACTAGAAAATGCCCCG 60.048 40.000 0.00 0.00 0.00 5.73
2615 2658 3.191791 TGTAAAACTAGAAAATGCCCCGC 59.808 43.478 0.00 0.00 0.00 6.13
2616 2659 0.808755 AAACTAGAAAATGCCCCGCG 59.191 50.000 0.00 0.00 0.00 6.46
2617 2660 0.322187 AACTAGAAAATGCCCCGCGT 60.322 50.000 4.92 0.00 0.00 6.01
2618 2661 1.024579 ACTAGAAAATGCCCCGCGTG 61.025 55.000 4.92 0.00 0.00 5.34
2619 2662 1.003112 TAGAAAATGCCCCGCGTGT 60.003 52.632 4.92 0.00 0.00 4.49
2620 2663 0.606944 TAGAAAATGCCCCGCGTGTT 60.607 50.000 4.92 0.00 0.00 3.32
2621 2664 1.732683 GAAAATGCCCCGCGTGTTG 60.733 57.895 4.92 0.00 0.00 3.33
2622 2665 2.414840 GAAAATGCCCCGCGTGTTGT 62.415 55.000 4.92 0.00 0.00 3.32
2623 2666 1.173444 AAAATGCCCCGCGTGTTGTA 61.173 50.000 4.92 0.00 0.00 2.41
2624 2667 1.582610 AAATGCCCCGCGTGTTGTAG 61.583 55.000 4.92 0.00 0.00 2.74
2625 2668 2.741486 AATGCCCCGCGTGTTGTAGT 62.741 55.000 4.92 0.00 0.00 2.73
2626 2669 3.419759 GCCCCGCGTGTTGTAGTG 61.420 66.667 4.92 0.00 0.00 2.74
2627 2670 2.340809 CCCCGCGTGTTGTAGTGA 59.659 61.111 4.92 0.00 0.00 3.41
2628 2671 1.301087 CCCCGCGTGTTGTAGTGAA 60.301 57.895 4.92 0.00 0.00 3.18
2629 2672 0.881159 CCCCGCGTGTTGTAGTGAAA 60.881 55.000 4.92 0.00 0.00 2.69
2630 2673 1.153353 CCCGCGTGTTGTAGTGAAAT 58.847 50.000 4.92 0.00 0.00 2.17
2631 2674 1.533731 CCCGCGTGTTGTAGTGAAATT 59.466 47.619 4.92 0.00 0.00 1.82
2632 2675 2.031508 CCCGCGTGTTGTAGTGAAATTT 60.032 45.455 4.92 0.00 0.00 1.82
2633 2676 3.549221 CCCGCGTGTTGTAGTGAAATTTT 60.549 43.478 4.92 0.00 0.00 1.82
2634 2677 4.039032 CCGCGTGTTGTAGTGAAATTTTT 58.961 39.130 4.92 0.00 0.00 1.94
2652 2695 3.963383 TTTTGTCGGCTTCTTTGAGAC 57.037 42.857 0.00 0.00 0.00 3.36
2653 2696 2.613026 TTGTCGGCTTCTTTGAGACA 57.387 45.000 0.00 0.00 39.68 3.41
2654 2697 2.839486 TGTCGGCTTCTTTGAGACAT 57.161 45.000 0.00 0.00 36.98 3.06
2655 2698 3.953712 TGTCGGCTTCTTTGAGACATA 57.046 42.857 0.00 0.00 36.98 2.29
2656 2699 4.471904 TGTCGGCTTCTTTGAGACATAT 57.528 40.909 0.00 0.00 36.98 1.78
2657 2700 4.832248 TGTCGGCTTCTTTGAGACATATT 58.168 39.130 0.00 0.00 36.98 1.28
2658 2701 4.631377 TGTCGGCTTCTTTGAGACATATTG 59.369 41.667 0.00 0.00 36.98 1.90
2659 2702 4.631813 GTCGGCTTCTTTGAGACATATTGT 59.368 41.667 0.00 0.00 32.57 2.71
2660 2703 5.810587 GTCGGCTTCTTTGAGACATATTGTA 59.189 40.000 0.00 0.00 32.57 2.41
2661 2704 6.312918 GTCGGCTTCTTTGAGACATATTGTAA 59.687 38.462 0.00 0.00 32.57 2.41
2662 2705 7.011482 GTCGGCTTCTTTGAGACATATTGTAAT 59.989 37.037 0.00 0.00 32.57 1.89
2663 2706 7.011389 TCGGCTTCTTTGAGACATATTGTAATG 59.989 37.037 0.00 0.00 0.00 1.90
2664 2707 7.011389 CGGCTTCTTTGAGACATATTGTAATGA 59.989 37.037 0.00 0.00 0.00 2.57
2665 2708 8.844244 GGCTTCTTTGAGACATATTGTAATGAT 58.156 33.333 0.00 0.00 0.00 2.45
2712 2755 8.974408 CATAATATGCATCCAAACAACTGAATG 58.026 33.333 0.19 0.00 0.00 2.67
2713 2756 3.663995 TGCATCCAAACAACTGAATGG 57.336 42.857 0.00 0.00 0.00 3.16
2714 2757 3.229293 TGCATCCAAACAACTGAATGGA 58.771 40.909 9.54 9.54 45.42 3.41
2715 2758 3.005684 TGCATCCAAACAACTGAATGGAC 59.994 43.478 9.38 1.89 44.25 4.02
2716 2759 3.005684 GCATCCAAACAACTGAATGGACA 59.994 43.478 9.38 0.00 44.25 4.02
2717 2760 4.322198 GCATCCAAACAACTGAATGGACAT 60.322 41.667 9.38 0.00 44.25 3.06
2718 2761 5.404946 CATCCAAACAACTGAATGGACATC 58.595 41.667 9.38 0.00 44.25 3.06
2719 2762 4.468713 TCCAAACAACTGAATGGACATCA 58.531 39.130 4.75 0.00 37.05 3.07
2720 2763 5.078949 TCCAAACAACTGAATGGACATCAT 58.921 37.500 4.75 0.00 37.05 2.45
2721 2764 6.244654 TCCAAACAACTGAATGGACATCATA 58.755 36.000 4.75 0.00 37.05 2.15
2722 2765 6.375174 TCCAAACAACTGAATGGACATCATAG 59.625 38.462 4.75 0.00 37.05 2.23
2723 2766 6.405065 CCAAACAACTGAATGGACATCATAGG 60.405 42.308 0.00 0.00 34.44 2.57
2724 2767 4.202441 ACAACTGAATGGACATCATAGGC 58.798 43.478 0.00 0.00 34.44 3.93
2725 2768 4.201657 CAACTGAATGGACATCATAGGCA 58.798 43.478 0.00 0.00 34.44 4.75
2726 2769 4.082665 ACTGAATGGACATCATAGGCAG 57.917 45.455 0.00 0.00 36.54 4.85
2727 2770 3.181447 ACTGAATGGACATCATAGGCAGG 60.181 47.826 0.00 0.00 35.65 4.85
2728 2771 3.047857 TGAATGGACATCATAGGCAGGA 58.952 45.455 0.00 0.00 34.44 3.86
2729 2772 3.459227 TGAATGGACATCATAGGCAGGAA 59.541 43.478 0.00 0.00 34.44 3.36
2730 2773 4.079844 TGAATGGACATCATAGGCAGGAAA 60.080 41.667 0.00 0.00 34.44 3.13
2731 2774 4.524802 ATGGACATCATAGGCAGGAAAA 57.475 40.909 0.00 0.00 33.61 2.29
2732 2775 4.524802 TGGACATCATAGGCAGGAAAAT 57.475 40.909 0.00 0.00 0.00 1.82
2733 2776 4.464008 TGGACATCATAGGCAGGAAAATC 58.536 43.478 0.00 0.00 0.00 2.17
2734 2777 4.079844 TGGACATCATAGGCAGGAAAATCA 60.080 41.667 0.00 0.00 0.00 2.57
2735 2778 4.889409 GGACATCATAGGCAGGAAAATCAA 59.111 41.667 0.00 0.00 0.00 2.57
2736 2779 5.360714 GGACATCATAGGCAGGAAAATCAAA 59.639 40.000 0.00 0.00 0.00 2.69
2737 2780 6.460676 GGACATCATAGGCAGGAAAATCAAAG 60.461 42.308 0.00 0.00 0.00 2.77
2738 2781 5.954150 ACATCATAGGCAGGAAAATCAAAGT 59.046 36.000 0.00 0.00 0.00 2.66
2739 2782 6.438425 ACATCATAGGCAGGAAAATCAAAGTT 59.562 34.615 0.00 0.00 0.00 2.66
2740 2783 6.916360 TCATAGGCAGGAAAATCAAAGTTT 57.084 33.333 0.00 0.00 0.00 2.66
2741 2784 7.301868 TCATAGGCAGGAAAATCAAAGTTTT 57.698 32.000 0.00 0.00 34.19 2.43
2742 2785 7.734942 TCATAGGCAGGAAAATCAAAGTTTTT 58.265 30.769 0.00 0.00 31.80 1.94
2770 2813 4.311816 CCCATTGTGGCATCTTGATTAC 57.688 45.455 0.00 0.00 35.79 1.89
2771 2814 3.956199 CCCATTGTGGCATCTTGATTACT 59.044 43.478 0.00 0.00 35.79 2.24
2772 2815 4.202080 CCCATTGTGGCATCTTGATTACTG 60.202 45.833 0.00 0.00 35.79 2.74
2773 2816 4.641541 CCATTGTGGCATCTTGATTACTGA 59.358 41.667 0.00 0.00 0.00 3.41
2774 2817 5.125900 CCATTGTGGCATCTTGATTACTGAA 59.874 40.000 0.00 0.00 0.00 3.02
2775 2818 6.350361 CCATTGTGGCATCTTGATTACTGAAA 60.350 38.462 0.00 0.00 0.00 2.69
2776 2819 6.647334 TTGTGGCATCTTGATTACTGAAAA 57.353 33.333 0.00 0.00 0.00 2.29
2777 2820 6.012658 TGTGGCATCTTGATTACTGAAAAC 57.987 37.500 0.00 0.00 0.00 2.43
2778 2821 5.534278 TGTGGCATCTTGATTACTGAAAACA 59.466 36.000 0.00 0.00 0.00 2.83
2779 2822 6.040278 TGTGGCATCTTGATTACTGAAAACAA 59.960 34.615 0.00 0.00 0.00 2.83
2780 2823 7.092716 GTGGCATCTTGATTACTGAAAACAAT 58.907 34.615 0.00 0.00 0.00 2.71
2781 2824 7.062605 GTGGCATCTTGATTACTGAAAACAATG 59.937 37.037 0.00 0.00 0.00 2.82
2782 2825 6.532657 GGCATCTTGATTACTGAAAACAATGG 59.467 38.462 0.00 0.00 0.00 3.16
2783 2826 7.315142 GCATCTTGATTACTGAAAACAATGGA 58.685 34.615 0.00 0.00 0.00 3.41
2784 2827 7.814107 GCATCTTGATTACTGAAAACAATGGAA 59.186 33.333 0.00 0.00 0.00 3.53
2785 2828 9.350357 CATCTTGATTACTGAAAACAATGGAAG 57.650 33.333 0.00 0.00 0.00 3.46
2786 2829 8.690203 TCTTGATTACTGAAAACAATGGAAGA 57.310 30.769 0.00 0.00 0.00 2.87
2787 2830 9.130661 TCTTGATTACTGAAAACAATGGAAGAA 57.869 29.630 0.00 0.00 0.00 2.52
2788 2831 9.748708 CTTGATTACTGAAAACAATGGAAGAAA 57.251 29.630 0.00 0.00 0.00 2.52
2792 2835 9.710900 ATTACTGAAAACAATGGAAGAAAATCC 57.289 29.630 0.00 0.00 40.10 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.808847 GACCGGAATTGCGTACCTCC 60.809 60.000 18.34 0.00 0.00 4.30
102 103 5.104569 TGCATGGTTTATGTATGAGGACAGA 60.105 40.000 0.00 0.00 39.08 3.41
187 188 1.143889 GGGGAGAGGGTTGGATCATTC 59.856 57.143 0.00 0.00 0.00 2.67
199 200 3.746792 AATTTTCAGAAGGGGGAGAGG 57.253 47.619 0.00 0.00 0.00 3.69
268 269 1.071605 GACAGACCAGTCATGCGTTC 58.928 55.000 0.00 0.00 38.40 3.95
294 295 2.125106 CCGGGGTTAGACTGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
295 296 2.584608 CCCGGGGTTAGACTGCTG 59.415 66.667 14.71 0.00 0.00 4.41
386 387 0.257905 AGAGAAATTAACCCCCGCCC 59.742 55.000 0.00 0.00 0.00 6.13
573 590 2.674033 TGGCTGGTGCTCATGTGC 60.674 61.111 12.78 12.78 39.59 4.57
651 668 0.476611 AAAAGGAGGAGGACTGGGCT 60.477 55.000 0.00 0.00 0.00 5.19
901 918 4.766373 TGTGCATGGGTTTATATATGGCTG 59.234 41.667 0.00 0.00 0.00 4.85
902 919 4.766891 GTGTGCATGGGTTTATATATGGCT 59.233 41.667 0.00 0.00 0.00 4.75
903 920 4.082245 GGTGTGCATGGGTTTATATATGGC 60.082 45.833 0.00 0.00 0.00 4.40
904 921 5.076182 TGGTGTGCATGGGTTTATATATGG 58.924 41.667 0.00 0.00 0.00 2.74
905 922 5.335897 GCTGGTGTGCATGGGTTTATATATG 60.336 44.000 0.00 0.00 0.00 1.78
906 923 4.766891 GCTGGTGTGCATGGGTTTATATAT 59.233 41.667 0.00 0.00 0.00 0.86
913 930 2.601367 GGCTGGTGTGCATGGGTT 60.601 61.111 0.00 0.00 34.04 4.11
937 954 1.808945 CACTGGTGAGTTTGGATGAGC 59.191 52.381 0.00 0.00 0.00 4.26
1013 1034 0.790814 GAGAGCACCGAAAAGAACCG 59.209 55.000 0.00 0.00 0.00 4.44
1111 1132 1.064946 GACATCGTCGGGAGAGCAG 59.935 63.158 0.00 0.00 41.26 4.24
1126 1147 0.321919 GGGCATCTTCAGCACTGACA 60.322 55.000 0.00 0.00 39.66 3.58
1147 1168 0.739813 AGCGATGCCACGTACCTTTC 60.740 55.000 0.00 0.00 35.59 2.62
1177 1198 5.305386 TGTTCATAGCTACAGCATACTCCAT 59.695 40.000 3.70 0.00 45.16 3.41
1178 1199 4.649218 TGTTCATAGCTACAGCATACTCCA 59.351 41.667 3.70 0.00 45.16 3.86
1179 1200 4.985409 GTGTTCATAGCTACAGCATACTCC 59.015 45.833 3.70 0.00 45.16 3.85
1180 1201 5.689514 CAGTGTTCATAGCTACAGCATACTC 59.310 44.000 3.70 0.00 45.16 2.59
1181 1202 5.452496 CCAGTGTTCATAGCTACAGCATACT 60.452 44.000 3.70 0.00 45.16 2.12
1182 1203 4.747108 CCAGTGTTCATAGCTACAGCATAC 59.253 45.833 3.70 0.00 45.16 2.39
1183 1204 4.405680 ACCAGTGTTCATAGCTACAGCATA 59.594 41.667 3.70 0.00 45.16 3.14
1184 1205 3.198635 ACCAGTGTTCATAGCTACAGCAT 59.801 43.478 3.70 0.00 45.16 3.79
1185 1206 2.567169 ACCAGTGTTCATAGCTACAGCA 59.433 45.455 3.70 0.00 45.16 4.41
1278 1301 2.277373 CGTCTGCGTCTCGTAGGC 60.277 66.667 7.30 4.81 40.48 3.93
1448 1471 3.444818 TTGGGTGGTGGACTTGGCC 62.445 63.158 0.00 0.00 0.00 5.36
1649 1681 1.427020 CGTCGAAGGAGGACCGTAC 59.573 63.158 0.00 0.00 41.83 3.67
1886 1918 4.566759 ACAACACAAACATATCGATCTCCG 59.433 41.667 0.00 0.00 40.25 4.63
1928 1960 2.734079 ACAAAACAACCAACAAGCAACG 59.266 40.909 0.00 0.00 0.00 4.10
2056 2095 3.120060 AGTTCGCAAATGCAAAGCTCTAG 60.120 43.478 6.18 0.00 42.21 2.43
2105 2144 9.344772 TCTACTGCCAACAAGATAGTTTAAAAA 57.655 29.630 0.00 0.00 0.00 1.94
2107 2146 8.154856 ACTCTACTGCCAACAAGATAGTTTAAA 58.845 33.333 0.00 0.00 0.00 1.52
2109 2148 7.241042 ACTCTACTGCCAACAAGATAGTTTA 57.759 36.000 0.00 0.00 0.00 2.01
2110 2149 6.115448 ACTCTACTGCCAACAAGATAGTTT 57.885 37.500 0.00 0.00 0.00 2.66
2134 2177 7.503902 AGTTTACTTTTCTTTTCTGGATGCTCT 59.496 33.333 0.00 0.00 0.00 4.09
2166 2209 0.457443 CACGCTGCCTGTATGAGAGA 59.543 55.000 0.00 0.00 0.00 3.10
2167 2210 0.529337 CCACGCTGCCTGTATGAGAG 60.529 60.000 0.00 0.00 0.00 3.20
2168 2211 1.257750 ACCACGCTGCCTGTATGAGA 61.258 55.000 0.00 0.00 0.00 3.27
2169 2212 0.391661 AACCACGCTGCCTGTATGAG 60.392 55.000 0.00 0.00 0.00 2.90
2170 2213 0.036164 AAACCACGCTGCCTGTATGA 59.964 50.000 0.00 0.00 0.00 2.15
2171 2214 0.881118 AAAACCACGCTGCCTGTATG 59.119 50.000 0.00 0.00 0.00 2.39
2172 2215 0.881118 CAAAACCACGCTGCCTGTAT 59.119 50.000 0.00 0.00 0.00 2.29
2173 2216 0.179043 TCAAAACCACGCTGCCTGTA 60.179 50.000 0.00 0.00 0.00 2.74
2174 2217 1.453015 TCAAAACCACGCTGCCTGT 60.453 52.632 0.00 0.00 0.00 4.00
2175 2218 1.008538 GTCAAAACCACGCTGCCTG 60.009 57.895 0.00 0.00 0.00 4.85
2176 2219 2.193536 GGTCAAAACCACGCTGCCT 61.194 57.895 0.00 0.00 45.68 4.75
2177 2220 2.335011 GGTCAAAACCACGCTGCC 59.665 61.111 0.00 0.00 45.68 4.85
2185 2228 1.363807 GCTGGCACTGGTCAAAACC 59.636 57.895 0.00 0.00 46.66 3.27
2186 2229 1.109323 AGGCTGGCACTGGTCAAAAC 61.109 55.000 3.38 0.00 0.00 2.43
2187 2230 1.108727 CAGGCTGGCACTGGTCAAAA 61.109 55.000 6.61 0.00 32.38 2.44
2188 2231 1.529010 CAGGCTGGCACTGGTCAAA 60.529 57.895 6.61 0.00 32.38 2.69
2189 2232 1.782201 ATCAGGCTGGCACTGGTCAA 61.782 55.000 15.73 0.00 36.62 3.18
2190 2233 0.909133 TATCAGGCTGGCACTGGTCA 60.909 55.000 15.73 0.00 36.62 4.02
2191 2234 0.462759 GTATCAGGCTGGCACTGGTC 60.463 60.000 15.73 0.00 36.62 4.02
2192 2235 1.604378 GTATCAGGCTGGCACTGGT 59.396 57.895 15.73 1.04 36.62 4.00
2193 2236 1.522355 CGTATCAGGCTGGCACTGG 60.522 63.158 15.73 0.00 36.62 4.00
2194 2237 2.176273 GCGTATCAGGCTGGCACTG 61.176 63.158 15.73 9.90 37.30 3.66
2195 2238 2.187946 GCGTATCAGGCTGGCACT 59.812 61.111 15.73 0.00 0.00 4.40
2196 2239 1.884926 GAGCGTATCAGGCTGGCAC 60.885 63.158 15.73 11.59 39.71 5.01
2197 2240 2.060383 AGAGCGTATCAGGCTGGCA 61.060 57.895 15.73 0.00 39.71 4.92
2198 2241 1.593750 CAGAGCGTATCAGGCTGGC 60.594 63.158 15.73 10.07 39.71 4.85
2199 2242 0.529337 CACAGAGCGTATCAGGCTGG 60.529 60.000 15.73 0.00 39.71 4.85
2200 2243 1.150567 GCACAGAGCGTATCAGGCTG 61.151 60.000 8.58 8.58 39.71 4.85
2201 2244 1.142748 GCACAGAGCGTATCAGGCT 59.857 57.895 0.00 0.00 42.66 4.58
2202 2245 3.711348 GCACAGAGCGTATCAGGC 58.289 61.111 0.00 0.00 0.00 4.85
2211 2254 5.149977 GTCTTGTATTTTGAAGCACAGAGC 58.850 41.667 0.00 0.00 46.19 4.09
2212 2255 5.050091 ACGTCTTGTATTTTGAAGCACAGAG 60.050 40.000 0.00 0.00 0.00 3.35
2213 2256 4.814234 ACGTCTTGTATTTTGAAGCACAGA 59.186 37.500 0.00 0.00 0.00 3.41
2214 2257 5.050091 AGACGTCTTGTATTTTGAAGCACAG 60.050 40.000 13.58 0.00 0.00 3.66
2215 2258 4.814234 AGACGTCTTGTATTTTGAAGCACA 59.186 37.500 13.58 0.00 0.00 4.57
2216 2259 5.344207 AGACGTCTTGTATTTTGAAGCAC 57.656 39.130 13.58 0.00 0.00 4.40
2217 2260 6.480651 TGTAAGACGTCTTGTATTTTGAAGCA 59.519 34.615 35.24 12.16 37.40 3.91
2218 2261 6.884187 TGTAAGACGTCTTGTATTTTGAAGC 58.116 36.000 35.24 13.54 37.40 3.86
2219 2262 9.878599 AAATGTAAGACGTCTTGTATTTTGAAG 57.121 29.630 35.24 0.00 37.40 3.02
2221 2264 9.658475 CAAAATGTAAGACGTCTTGTATTTTGA 57.342 29.630 41.89 26.05 46.52 2.69
2222 2265 9.658475 TCAAAATGTAAGACGTCTTGTATTTTG 57.342 29.630 40.81 40.81 45.97 2.44
2223 2266 9.878599 CTCAAAATGTAAGACGTCTTGTATTTT 57.121 29.630 33.45 33.45 39.94 1.82
2224 2267 9.268268 TCTCAAAATGTAAGACGTCTTGTATTT 57.732 29.630 35.24 31.69 35.90 1.40
2225 2268 8.709646 GTCTCAAAATGTAAGACGTCTTGTATT 58.290 33.333 35.24 28.94 37.40 1.89
2226 2269 7.870954 TGTCTCAAAATGTAAGACGTCTTGTAT 59.129 33.333 35.24 25.78 41.84 2.29
2227 2270 7.204604 TGTCTCAAAATGTAAGACGTCTTGTA 58.795 34.615 35.24 24.87 41.84 2.41
2228 2271 6.046593 TGTCTCAAAATGTAAGACGTCTTGT 58.953 36.000 35.24 20.52 41.84 3.16
2229 2272 6.420903 TCTGTCTCAAAATGTAAGACGTCTTG 59.579 38.462 35.24 20.50 41.84 3.02
2230 2273 6.513180 TCTGTCTCAAAATGTAAGACGTCTT 58.487 36.000 31.70 31.70 41.84 3.01
2231 2274 6.085555 TCTGTCTCAAAATGTAAGACGTCT 57.914 37.500 13.58 13.58 41.84 4.18
2232 2275 5.921408 ACTCTGTCTCAAAATGTAAGACGTC 59.079 40.000 7.70 7.70 41.84 4.34
2233 2276 5.692204 CACTCTGTCTCAAAATGTAAGACGT 59.308 40.000 0.00 0.00 41.84 4.34
2234 2277 5.119279 CCACTCTGTCTCAAAATGTAAGACG 59.881 44.000 0.00 0.00 41.84 4.18
2235 2278 5.409826 CCCACTCTGTCTCAAAATGTAAGAC 59.590 44.000 0.00 0.00 39.87 3.01
2236 2279 5.071788 ACCCACTCTGTCTCAAAATGTAAGA 59.928 40.000 0.00 0.00 0.00 2.10
2237 2280 5.308825 ACCCACTCTGTCTCAAAATGTAAG 58.691 41.667 0.00 0.00 0.00 2.34
2238 2281 5.304686 ACCCACTCTGTCTCAAAATGTAA 57.695 39.130 0.00 0.00 0.00 2.41
2239 2282 4.974645 ACCCACTCTGTCTCAAAATGTA 57.025 40.909 0.00 0.00 0.00 2.29
2240 2283 3.864789 ACCCACTCTGTCTCAAAATGT 57.135 42.857 0.00 0.00 0.00 2.71
2241 2284 6.824305 AAATACCCACTCTGTCTCAAAATG 57.176 37.500 0.00 0.00 0.00 2.32
2242 2285 7.607991 CAGTAAATACCCACTCTGTCTCAAAAT 59.392 37.037 0.00 0.00 0.00 1.82
2243 2286 6.934645 CAGTAAATACCCACTCTGTCTCAAAA 59.065 38.462 0.00 0.00 0.00 2.44
2244 2287 6.042781 ACAGTAAATACCCACTCTGTCTCAAA 59.957 38.462 0.00 0.00 31.81 2.69
2245 2288 5.542635 ACAGTAAATACCCACTCTGTCTCAA 59.457 40.000 0.00 0.00 31.81 3.02
2246 2289 5.047306 CACAGTAAATACCCACTCTGTCTCA 60.047 44.000 0.00 0.00 34.57 3.27
2247 2290 5.047235 ACACAGTAAATACCCACTCTGTCTC 60.047 44.000 0.00 0.00 34.57 3.36
2248 2291 4.838986 ACACAGTAAATACCCACTCTGTCT 59.161 41.667 0.00 0.00 34.57 3.41
2249 2292 5.148651 ACACAGTAAATACCCACTCTGTC 57.851 43.478 0.00 0.00 34.57 3.51
2250 2293 5.541101 TGTACACAGTAAATACCCACTCTGT 59.459 40.000 0.00 0.00 36.73 3.41
2251 2294 6.032956 TGTACACAGTAAATACCCACTCTG 57.967 41.667 0.00 0.00 0.00 3.35
2252 2295 6.269307 AGTTGTACACAGTAAATACCCACTCT 59.731 38.462 0.00 0.00 0.00 3.24
2253 2296 6.367969 CAGTTGTACACAGTAAATACCCACTC 59.632 42.308 0.00 0.00 0.00 3.51
2254 2297 6.228258 CAGTTGTACACAGTAAATACCCACT 58.772 40.000 0.00 0.00 0.00 4.00
2255 2298 5.106830 GCAGTTGTACACAGTAAATACCCAC 60.107 44.000 0.00 0.00 0.00 4.61
2256 2299 4.998672 GCAGTTGTACACAGTAAATACCCA 59.001 41.667 0.00 0.00 0.00 4.51
2257 2300 4.998672 TGCAGTTGTACACAGTAAATACCC 59.001 41.667 0.00 0.00 0.00 3.69
2258 2301 5.106830 GGTGCAGTTGTACACAGTAAATACC 60.107 44.000 0.00 0.00 38.57 2.73
2259 2302 5.389098 CGGTGCAGTTGTACACAGTAAATAC 60.389 44.000 0.00 0.00 38.57 1.89
2260 2303 4.687018 CGGTGCAGTTGTACACAGTAAATA 59.313 41.667 0.00 0.00 38.57 1.40
2261 2304 3.496884 CGGTGCAGTTGTACACAGTAAAT 59.503 43.478 0.00 0.00 38.57 1.40
2262 2305 2.867368 CGGTGCAGTTGTACACAGTAAA 59.133 45.455 0.00 0.00 38.57 2.01
2263 2306 2.475818 CGGTGCAGTTGTACACAGTAA 58.524 47.619 0.00 0.00 38.57 2.24
2264 2307 1.870580 GCGGTGCAGTTGTACACAGTA 60.871 52.381 0.00 0.00 38.57 2.74
2265 2308 1.157870 GCGGTGCAGTTGTACACAGT 61.158 55.000 0.00 0.00 38.57 3.55
2266 2309 1.157257 TGCGGTGCAGTTGTACACAG 61.157 55.000 0.00 0.00 38.57 3.66
2267 2310 1.153349 TGCGGTGCAGTTGTACACA 60.153 52.632 0.00 0.00 38.57 3.72
2268 2311 1.278637 GTGCGGTGCAGTTGTACAC 59.721 57.895 0.00 0.00 40.08 2.90
2269 2312 2.241190 CGTGCGGTGCAGTTGTACA 61.241 57.895 0.00 0.00 40.08 2.90
2270 2313 2.549282 CGTGCGGTGCAGTTGTAC 59.451 61.111 0.00 0.00 40.08 2.90
2271 2314 2.663520 CCGTGCGGTGCAGTTGTA 60.664 61.111 1.93 0.00 40.08 2.41
2276 2319 3.556543 AAAATGCCGTGCGGTGCAG 62.557 57.895 12.46 0.00 40.08 4.41
2277 2320 3.600694 AAAATGCCGTGCGGTGCA 61.601 55.556 12.46 5.31 42.52 4.57
2278 2321 2.817470 ATCAAAATGCCGTGCGGTGC 62.817 55.000 12.46 0.00 37.65 5.01
2279 2322 1.072116 CATCAAAATGCCGTGCGGTG 61.072 55.000 12.46 2.39 37.65 4.94
2280 2323 1.212490 CATCAAAATGCCGTGCGGT 59.788 52.632 12.46 0.00 37.65 5.68
2281 2324 1.516821 CCATCAAAATGCCGTGCGG 60.517 57.895 6.22 6.22 38.57 5.69
2282 2325 2.160221 GCCATCAAAATGCCGTGCG 61.160 57.895 0.00 0.00 0.00 5.34
2283 2326 1.079956 TGCCATCAAAATGCCGTGC 60.080 52.632 0.00 0.00 0.00 5.34
2284 2327 1.072116 CGTGCCATCAAAATGCCGTG 61.072 55.000 0.00 0.00 0.00 4.94
2285 2328 1.212490 CGTGCCATCAAAATGCCGT 59.788 52.632 0.00 0.00 0.00 5.68
2286 2329 2.160221 GCGTGCCATCAAAATGCCG 61.160 57.895 0.00 0.00 0.00 5.69
2287 2330 1.079875 CAGCGTGCCATCAAAATGCC 61.080 55.000 0.00 0.00 0.00 4.40
2288 2331 1.689352 GCAGCGTGCCATCAAAATGC 61.689 55.000 0.00 0.00 37.42 3.56
2289 2332 2.365823 GCAGCGTGCCATCAAAATG 58.634 52.632 0.00 0.00 37.42 2.32
2290 2333 4.895854 GCAGCGTGCCATCAAAAT 57.104 50.000 0.00 0.00 37.42 1.82
2299 2342 4.374702 CGTGTCAAGGCAGCGTGC 62.375 66.667 1.92 1.92 44.08 5.34
2300 2343 3.716006 CCGTGTCAAGGCAGCGTG 61.716 66.667 0.00 0.00 0.00 5.34
2301 2344 4.235762 ACCGTGTCAAGGCAGCGT 62.236 61.111 4.52 0.00 0.00 5.07
2302 2345 3.716006 CACCGTGTCAAGGCAGCG 61.716 66.667 4.52 0.00 0.00 5.18
2303 2346 3.357079 CCACCGTGTCAAGGCAGC 61.357 66.667 4.52 0.00 0.00 5.25
2304 2347 1.507141 GAACCACCGTGTCAAGGCAG 61.507 60.000 4.52 0.00 0.00 4.85
2305 2348 1.525077 GAACCACCGTGTCAAGGCA 60.525 57.895 4.52 0.00 0.00 4.75
2306 2349 0.034337 TAGAACCACCGTGTCAAGGC 59.966 55.000 4.52 0.00 0.00 4.35
2307 2350 1.616865 TCTAGAACCACCGTGTCAAGG 59.383 52.381 2.91 2.91 0.00 3.61
2308 2351 2.035449 TGTCTAGAACCACCGTGTCAAG 59.965 50.000 0.00 0.00 0.00 3.02
2309 2352 2.033372 TGTCTAGAACCACCGTGTCAA 58.967 47.619 0.00 0.00 0.00 3.18
2310 2353 1.694844 TGTCTAGAACCACCGTGTCA 58.305 50.000 0.00 0.00 0.00 3.58
2311 2354 2.230508 TGATGTCTAGAACCACCGTGTC 59.769 50.000 0.00 0.00 0.00 3.67
2312 2355 2.244695 TGATGTCTAGAACCACCGTGT 58.755 47.619 0.00 0.00 0.00 4.49
2313 2356 3.254060 CTTGATGTCTAGAACCACCGTG 58.746 50.000 0.00 0.00 0.00 4.94
2314 2357 2.233922 CCTTGATGTCTAGAACCACCGT 59.766 50.000 0.00 0.00 0.00 4.83
2315 2358 2.233922 ACCTTGATGTCTAGAACCACCG 59.766 50.000 0.00 0.00 0.00 4.94
2316 2359 3.983044 ACCTTGATGTCTAGAACCACC 57.017 47.619 0.00 0.00 0.00 4.61
2317 2360 7.923414 ATAAAACCTTGATGTCTAGAACCAC 57.077 36.000 0.00 0.00 0.00 4.16
2323 2366 9.774742 GCTGTTTAATAAAACCTTGATGTCTAG 57.225 33.333 0.00 0.00 43.66 2.43
2324 2367 9.515226 AGCTGTTTAATAAAACCTTGATGTCTA 57.485 29.630 0.00 0.00 43.66 2.59
2325 2368 8.409358 AGCTGTTTAATAAAACCTTGATGTCT 57.591 30.769 0.00 0.00 43.66 3.41
2331 2374 9.076596 GCTGATTAGCTGTTTAATAAAACCTTG 57.923 33.333 1.49 0.00 46.57 3.61
2357 2400 0.727398 GGTTTAGGCTTGTAGCGCAG 59.273 55.000 11.47 0.00 43.62 5.18
2358 2401 0.035598 TGGTTTAGGCTTGTAGCGCA 59.964 50.000 11.47 0.00 43.62 6.09
2359 2402 1.161843 TTGGTTTAGGCTTGTAGCGC 58.838 50.000 0.00 0.00 43.62 5.92
2360 2403 5.751243 ATATTTGGTTTAGGCTTGTAGCG 57.249 39.130 0.00 0.00 43.62 4.26
2361 2404 6.273071 CCAATATTTGGTTTAGGCTTGTAGC 58.727 40.000 0.00 0.00 45.93 3.58
2376 2419 0.102844 CCAGCCGTGGCCAATATTTG 59.897 55.000 7.24 2.47 43.17 2.32
2377 2420 0.033601 TCCAGCCGTGGCCAATATTT 60.034 50.000 7.24 0.00 44.60 1.40
2378 2421 0.033601 TTCCAGCCGTGGCCAATATT 60.034 50.000 7.24 0.00 44.60 1.28
2379 2422 0.185901 ATTCCAGCCGTGGCCAATAT 59.814 50.000 7.24 0.00 44.60 1.28
2380 2423 0.751277 CATTCCAGCCGTGGCCAATA 60.751 55.000 7.24 0.00 44.60 1.90
2381 2424 2.053865 CATTCCAGCCGTGGCCAAT 61.054 57.895 7.24 0.96 44.60 3.16
2382 2425 2.676121 CATTCCAGCCGTGGCCAA 60.676 61.111 7.24 0.00 44.60 4.52
2383 2426 3.645660 TCATTCCAGCCGTGGCCA 61.646 61.111 0.00 0.00 44.60 5.36
2384 2427 3.134127 GTCATTCCAGCCGTGGCC 61.134 66.667 7.39 0.00 44.60 5.36
2385 2428 2.359850 TGTCATTCCAGCCGTGGC 60.360 61.111 1.67 1.67 44.60 5.01
2386 2429 1.746615 CCTGTCATTCCAGCCGTGG 60.747 63.158 0.00 0.00 46.63 4.94
2387 2430 2.401766 GCCTGTCATTCCAGCCGTG 61.402 63.158 0.00 0.00 0.00 4.94
2388 2431 2.045926 GCCTGTCATTCCAGCCGT 60.046 61.111 0.00 0.00 0.00 5.68
2389 2432 2.825836 GGCCTGTCATTCCAGCCG 60.826 66.667 0.00 0.00 0.00 5.52
2390 2433 2.825836 CGGCCTGTCATTCCAGCC 60.826 66.667 0.00 0.00 0.00 4.85
2391 2434 3.512516 GCGGCCTGTCATTCCAGC 61.513 66.667 0.00 0.00 0.00 4.85
2392 2435 1.651240 CTTGCGGCCTGTCATTCCAG 61.651 60.000 0.00 0.00 0.00 3.86
2393 2436 1.675310 CTTGCGGCCTGTCATTCCA 60.675 57.895 0.00 0.00 0.00 3.53
2394 2437 2.409870 CCTTGCGGCCTGTCATTCC 61.410 63.158 0.00 0.00 0.00 3.01
2395 2438 3.190878 CCTTGCGGCCTGTCATTC 58.809 61.111 0.00 0.00 0.00 2.67
2405 2448 1.202114 TGCTCTTTAATTGCCTTGCGG 59.798 47.619 0.00 0.00 0.00 5.69
2406 2449 2.095059 AGTGCTCTTTAATTGCCTTGCG 60.095 45.455 0.00 0.00 0.00 4.85
2407 2450 3.582714 AGTGCTCTTTAATTGCCTTGC 57.417 42.857 0.00 0.00 0.00 4.01
2408 2451 7.814107 TGATAAAAGTGCTCTTTAATTGCCTTG 59.186 33.333 13.76 0.00 42.26 3.61
2409 2452 7.895759 TGATAAAAGTGCTCTTTAATTGCCTT 58.104 30.769 13.76 0.00 42.26 4.35
2410 2453 7.466746 TGATAAAAGTGCTCTTTAATTGCCT 57.533 32.000 13.76 0.13 42.26 4.75
2411 2454 8.532977 TTTGATAAAAGTGCTCTTTAATTGCC 57.467 30.769 13.76 2.74 42.26 4.52
2412 2455 8.164790 GCTTTGATAAAAGTGCTCTTTAATTGC 58.835 33.333 13.76 8.72 42.26 3.56
2413 2456 8.650714 GGCTTTGATAAAAGTGCTCTTTAATTG 58.349 33.333 13.76 3.58 42.26 2.32
2414 2457 8.588472 AGGCTTTGATAAAAGTGCTCTTTAATT 58.412 29.630 13.76 2.15 42.26 1.40
2415 2458 8.127150 AGGCTTTGATAAAAGTGCTCTTTAAT 57.873 30.769 13.76 2.82 42.26 1.40
2416 2459 7.524717 AGGCTTTGATAAAAGTGCTCTTTAA 57.475 32.000 13.76 2.61 42.26 1.52
2417 2460 8.677300 CATAGGCTTTGATAAAAGTGCTCTTTA 58.323 33.333 13.76 4.08 42.26 1.85
2418 2461 7.177392 ACATAGGCTTTGATAAAAGTGCTCTTT 59.823 33.333 12.05 7.93 44.59 2.52
2419 2462 6.660949 ACATAGGCTTTGATAAAAGTGCTCTT 59.339 34.615 12.05 0.00 35.14 2.85
2420 2463 6.183347 ACATAGGCTTTGATAAAAGTGCTCT 58.817 36.000 12.05 1.09 32.52 4.09
2421 2464 6.442513 ACATAGGCTTTGATAAAAGTGCTC 57.557 37.500 12.05 0.00 32.52 4.26
2422 2465 6.840780 AACATAGGCTTTGATAAAAGTGCT 57.159 33.333 12.05 0.00 32.52 4.40
2423 2466 7.762382 AGTAACATAGGCTTTGATAAAAGTGC 58.238 34.615 12.05 0.00 32.52 4.40
2424 2467 9.167311 AGAGTAACATAGGCTTTGATAAAAGTG 57.833 33.333 12.05 0.00 32.52 3.16
2425 2468 9.167311 CAGAGTAACATAGGCTTTGATAAAAGT 57.833 33.333 12.05 0.00 32.52 2.66
2426 2469 8.616076 CCAGAGTAACATAGGCTTTGATAAAAG 58.384 37.037 12.05 0.00 0.00 2.27
2427 2470 8.325787 TCCAGAGTAACATAGGCTTTGATAAAA 58.674 33.333 12.05 0.00 0.00 1.52
2428 2471 7.857456 TCCAGAGTAACATAGGCTTTGATAAA 58.143 34.615 12.05 0.00 0.00 1.40
2429 2472 7.432148 TCCAGAGTAACATAGGCTTTGATAA 57.568 36.000 12.05 0.00 0.00 1.75
2430 2473 7.618019 ATCCAGAGTAACATAGGCTTTGATA 57.382 36.000 12.05 1.37 0.00 2.15
2431 2474 5.957771 TCCAGAGTAACATAGGCTTTGAT 57.042 39.130 12.05 2.40 0.00 2.57
2432 2475 5.957771 ATCCAGAGTAACATAGGCTTTGA 57.042 39.130 12.05 0.00 0.00 2.69
2433 2476 7.094205 ACAAAATCCAGAGTAACATAGGCTTTG 60.094 37.037 3.24 3.24 32.68 2.77
2434 2477 6.948309 ACAAAATCCAGAGTAACATAGGCTTT 59.052 34.615 0.00 0.00 0.00 3.51
2435 2478 6.375455 CACAAAATCCAGAGTAACATAGGCTT 59.625 38.462 0.00 0.00 0.00 4.35
2436 2479 5.882557 CACAAAATCCAGAGTAACATAGGCT 59.117 40.000 0.00 0.00 0.00 4.58
2437 2480 5.449177 GCACAAAATCCAGAGTAACATAGGC 60.449 44.000 0.00 0.00 0.00 3.93
2438 2481 5.647658 TGCACAAAATCCAGAGTAACATAGG 59.352 40.000 0.00 0.00 0.00 2.57
2439 2482 6.741992 TGCACAAAATCCAGAGTAACATAG 57.258 37.500 0.00 0.00 0.00 2.23
2440 2483 6.714810 AGTTGCACAAAATCCAGAGTAACATA 59.285 34.615 0.00 0.00 0.00 2.29
2441 2484 5.536161 AGTTGCACAAAATCCAGAGTAACAT 59.464 36.000 0.00 0.00 0.00 2.71
2442 2485 4.887071 AGTTGCACAAAATCCAGAGTAACA 59.113 37.500 0.00 0.00 0.00 2.41
2443 2486 5.438761 AGTTGCACAAAATCCAGAGTAAC 57.561 39.130 0.00 0.00 0.00 2.50
2444 2487 6.296026 ACTAGTTGCACAAAATCCAGAGTAA 58.704 36.000 0.00 0.00 0.00 2.24
2445 2488 5.865085 ACTAGTTGCACAAAATCCAGAGTA 58.135 37.500 0.00 0.00 0.00 2.59
2446 2489 4.718961 ACTAGTTGCACAAAATCCAGAGT 58.281 39.130 0.00 0.00 0.00 3.24
2447 2490 5.009010 ACAACTAGTTGCACAAAATCCAGAG 59.991 40.000 30.97 6.25 44.03 3.35
2448 2491 4.887071 ACAACTAGTTGCACAAAATCCAGA 59.113 37.500 30.97 0.00 44.03 3.86
2449 2492 5.186996 ACAACTAGTTGCACAAAATCCAG 57.813 39.130 30.97 7.28 44.03 3.86
2450 2493 4.037446 GGACAACTAGTTGCACAAAATCCA 59.963 41.667 30.97 0.00 44.03 3.41
2451 2494 4.546570 GGACAACTAGTTGCACAAAATCC 58.453 43.478 30.97 23.90 44.03 3.01
2452 2495 4.219033 CGGACAACTAGTTGCACAAAATC 58.781 43.478 30.97 19.84 44.03 2.17
2453 2496 3.630312 ACGGACAACTAGTTGCACAAAAT 59.370 39.130 30.97 13.17 44.03 1.82
2454 2497 3.011119 ACGGACAACTAGTTGCACAAAA 58.989 40.909 30.97 0.00 44.03 2.44
2455 2498 2.634600 ACGGACAACTAGTTGCACAAA 58.365 42.857 30.97 0.00 44.03 2.83
2456 2499 2.319136 ACGGACAACTAGTTGCACAA 57.681 45.000 30.97 0.00 44.03 3.33
2457 2500 2.746269 GTACGGACAACTAGTTGCACA 58.254 47.619 30.97 12.44 44.03 4.57
2458 2501 1.717645 CGTACGGACAACTAGTTGCAC 59.282 52.381 30.97 24.25 44.03 4.57
2459 2502 1.337703 ACGTACGGACAACTAGTTGCA 59.662 47.619 30.97 11.80 44.03 4.08
2460 2503 1.717645 CACGTACGGACAACTAGTTGC 59.282 52.381 30.97 23.19 44.03 4.17
2461 2504 1.717645 GCACGTACGGACAACTAGTTG 59.282 52.381 29.76 29.76 45.58 3.16
2462 2505 1.664016 CGCACGTACGGACAACTAGTT 60.664 52.381 21.06 1.12 0.00 2.24
2463 2506 0.110056 CGCACGTACGGACAACTAGT 60.110 55.000 21.06 0.00 0.00 2.57
2464 2507 2.633639 CGCACGTACGGACAACTAG 58.366 57.895 21.06 0.00 0.00 2.57
2465 2508 4.845177 CGCACGTACGGACAACTA 57.155 55.556 21.06 0.00 0.00 2.24
2473 2516 1.680105 GAACATGGACCGCACGTACG 61.680 60.000 15.01 15.01 0.00 3.67
2474 2517 0.389426 AGAACATGGACCGCACGTAC 60.389 55.000 0.00 0.00 0.00 3.67
2475 2518 1.175654 TAGAACATGGACCGCACGTA 58.824 50.000 0.00 0.00 0.00 3.57
2476 2519 0.535335 ATAGAACATGGACCGCACGT 59.465 50.000 0.00 0.00 0.00 4.49
2477 2520 1.202417 AGATAGAACATGGACCGCACG 60.202 52.381 0.00 0.00 0.00 5.34
2478 2521 2.604046 AGATAGAACATGGACCGCAC 57.396 50.000 0.00 0.00 0.00 5.34
2479 2522 3.627395 AAAGATAGAACATGGACCGCA 57.373 42.857 0.00 0.00 0.00 5.69
2480 2523 4.965119 AAAAAGATAGAACATGGACCGC 57.035 40.909 0.00 0.00 0.00 5.68
2481 2524 9.855021 AAAAATAAAAAGATAGAACATGGACCG 57.145 29.630 0.00 0.00 0.00 4.79
2551 2594 9.846248 GCACTATTAACATCCATGAATTATTCC 57.154 33.333 2.22 0.00 0.00 3.01
2556 2599 9.578576 ACATAGCACTATTAACATCCATGAATT 57.421 29.630 0.00 0.00 0.00 2.17
2557 2600 9.224267 GACATAGCACTATTAACATCCATGAAT 57.776 33.333 0.00 0.00 0.00 2.57
2558 2601 8.210265 TGACATAGCACTATTAACATCCATGAA 58.790 33.333 0.00 0.00 0.00 2.57
2559 2602 7.734942 TGACATAGCACTATTAACATCCATGA 58.265 34.615 0.00 0.00 0.00 3.07
2560 2603 7.967890 TGACATAGCACTATTAACATCCATG 57.032 36.000 0.00 0.00 0.00 3.66
2561 2604 8.159447 ACATGACATAGCACTATTAACATCCAT 58.841 33.333 0.00 0.00 0.00 3.41
2562 2605 7.442062 CACATGACATAGCACTATTAACATCCA 59.558 37.037 0.00 0.00 0.00 3.41
2563 2606 7.571983 GCACATGACATAGCACTATTAACATCC 60.572 40.741 0.00 0.00 0.00 3.51
2564 2607 7.041848 TGCACATGACATAGCACTATTAACATC 60.042 37.037 0.00 0.00 31.05 3.06
2565 2608 6.767423 TGCACATGACATAGCACTATTAACAT 59.233 34.615 0.00 0.00 31.05 2.71
2566 2609 6.112058 TGCACATGACATAGCACTATTAACA 58.888 36.000 0.00 0.00 31.05 2.41
2567 2610 6.603237 TGCACATGACATAGCACTATTAAC 57.397 37.500 0.00 0.00 31.05 2.01
2575 2618 2.781923 ACAAGTGCACATGACATAGCA 58.218 42.857 27.42 9.88 34.10 3.49
2576 2619 4.944962 TTACAAGTGCACATGACATAGC 57.055 40.909 27.42 5.36 0.00 2.97
2577 2620 6.902341 AGTTTTACAAGTGCACATGACATAG 58.098 36.000 27.42 1.10 0.00 2.23
2578 2621 6.875948 AGTTTTACAAGTGCACATGACATA 57.124 33.333 27.42 7.84 0.00 2.29
2579 2622 5.772825 AGTTTTACAAGTGCACATGACAT 57.227 34.783 27.42 8.85 0.00 3.06
2580 2623 6.052360 TCTAGTTTTACAAGTGCACATGACA 58.948 36.000 27.42 12.30 0.00 3.58
2581 2624 6.539649 TCTAGTTTTACAAGTGCACATGAC 57.460 37.500 27.42 15.05 0.00 3.06
2582 2625 7.561021 TTTCTAGTTTTACAAGTGCACATGA 57.439 32.000 27.42 9.29 0.00 3.07
2583 2626 8.693504 CATTTTCTAGTTTTACAAGTGCACATG 58.306 33.333 21.04 20.43 0.00 3.21
2584 2627 7.382218 GCATTTTCTAGTTTTACAAGTGCACAT 59.618 33.333 21.04 3.48 0.00 3.21
2585 2628 6.695278 GCATTTTCTAGTTTTACAAGTGCACA 59.305 34.615 21.04 0.00 0.00 4.57
2586 2629 6.143919 GGCATTTTCTAGTTTTACAAGTGCAC 59.856 38.462 9.40 9.40 0.00 4.57
2587 2630 6.212955 GGCATTTTCTAGTTTTACAAGTGCA 58.787 36.000 0.00 0.00 0.00 4.57
2588 2631 5.633601 GGGCATTTTCTAGTTTTACAAGTGC 59.366 40.000 0.00 0.00 0.00 4.40
2589 2632 6.156519 GGGGCATTTTCTAGTTTTACAAGTG 58.843 40.000 0.00 0.00 0.00 3.16
2590 2633 5.048294 CGGGGCATTTTCTAGTTTTACAAGT 60.048 40.000 0.00 0.00 0.00 3.16
2591 2634 5.399013 CGGGGCATTTTCTAGTTTTACAAG 58.601 41.667 0.00 0.00 0.00 3.16
2592 2635 4.321378 GCGGGGCATTTTCTAGTTTTACAA 60.321 41.667 0.00 0.00 0.00 2.41
2593 2636 3.191791 GCGGGGCATTTTCTAGTTTTACA 59.808 43.478 0.00 0.00 0.00 2.41
2594 2637 3.729762 CGCGGGGCATTTTCTAGTTTTAC 60.730 47.826 0.00 0.00 0.00 2.01
2595 2638 2.420722 CGCGGGGCATTTTCTAGTTTTA 59.579 45.455 0.00 0.00 0.00 1.52
2596 2639 1.201414 CGCGGGGCATTTTCTAGTTTT 59.799 47.619 0.00 0.00 0.00 2.43
2597 2640 0.808755 CGCGGGGCATTTTCTAGTTT 59.191 50.000 0.00 0.00 0.00 2.66
2598 2641 0.322187 ACGCGGGGCATTTTCTAGTT 60.322 50.000 12.47 0.00 0.00 2.24
2599 2642 1.024579 CACGCGGGGCATTTTCTAGT 61.025 55.000 12.47 0.00 0.00 2.57
2600 2643 1.024579 ACACGCGGGGCATTTTCTAG 61.025 55.000 15.46 0.00 0.00 2.43
2601 2644 0.606944 AACACGCGGGGCATTTTCTA 60.607 50.000 15.46 0.00 0.00 2.10
2602 2645 1.901464 AACACGCGGGGCATTTTCT 60.901 52.632 15.46 0.00 0.00 2.52
2603 2646 1.732683 CAACACGCGGGGCATTTTC 60.733 57.895 15.46 0.00 0.00 2.29
2604 2647 1.173444 TACAACACGCGGGGCATTTT 61.173 50.000 15.46 0.00 0.00 1.82
2605 2648 1.582610 CTACAACACGCGGGGCATTT 61.583 55.000 15.46 0.00 0.00 2.32
2606 2649 2.032834 TACAACACGCGGGGCATT 59.967 55.556 15.46 0.00 0.00 3.56
2607 2650 2.435938 CTACAACACGCGGGGCAT 60.436 61.111 15.46 0.00 0.00 4.40
2608 2651 3.931247 ACTACAACACGCGGGGCA 61.931 61.111 15.46 0.00 0.00 5.36
2609 2652 3.419759 CACTACAACACGCGGGGC 61.420 66.667 15.46 0.00 0.00 5.80
2610 2653 0.881159 TTTCACTACAACACGCGGGG 60.881 55.000 15.46 5.78 0.00 5.73
2611 2654 1.153353 ATTTCACTACAACACGCGGG 58.847 50.000 6.92 6.92 0.00 6.13
2612 2655 2.961522 AATTTCACTACAACACGCGG 57.038 45.000 12.47 1.27 0.00 6.46
2631 2674 3.692101 TGTCTCAAAGAAGCCGACAAAAA 59.308 39.130 0.00 0.00 32.26 1.94
2632 2675 3.275143 TGTCTCAAAGAAGCCGACAAAA 58.725 40.909 0.00 0.00 32.26 2.44
2633 2676 2.912771 TGTCTCAAAGAAGCCGACAAA 58.087 42.857 0.00 0.00 32.26 2.83
2634 2677 2.613026 TGTCTCAAAGAAGCCGACAA 57.387 45.000 0.00 0.00 32.26 3.18
2635 2678 2.839486 ATGTCTCAAAGAAGCCGACA 57.161 45.000 0.00 0.00 38.75 4.35
2636 2679 4.631813 ACAATATGTCTCAAAGAAGCCGAC 59.368 41.667 0.00 0.00 0.00 4.79
2637 2680 4.832248 ACAATATGTCTCAAAGAAGCCGA 58.168 39.130 0.00 0.00 0.00 5.54
2638 2681 6.662414 TTACAATATGTCTCAAAGAAGCCG 57.338 37.500 0.00 0.00 0.00 5.52
2639 2682 8.213518 TCATTACAATATGTCTCAAAGAAGCC 57.786 34.615 0.00 0.00 0.00 4.35
2686 2729 8.974408 CATTCAGTTGTTTGGATGCATATTATG 58.026 33.333 0.00 0.00 27.84 1.90
2687 2730 8.145767 CCATTCAGTTGTTTGGATGCATATTAT 58.854 33.333 0.00 0.00 33.49 1.28
2688 2731 7.341512 TCCATTCAGTTGTTTGGATGCATATTA 59.658 33.333 0.00 0.00 33.49 0.98
2689 2732 6.154877 TCCATTCAGTTGTTTGGATGCATATT 59.845 34.615 0.00 0.00 33.49 1.28
2690 2733 5.657745 TCCATTCAGTTGTTTGGATGCATAT 59.342 36.000 0.00 0.00 33.49 1.78
2691 2734 5.015515 TCCATTCAGTTGTTTGGATGCATA 58.984 37.500 0.00 0.00 33.49 3.14
2692 2735 3.833650 TCCATTCAGTTGTTTGGATGCAT 59.166 39.130 0.00 0.00 33.49 3.96
2693 2736 3.005684 GTCCATTCAGTTGTTTGGATGCA 59.994 43.478 0.00 0.00 40.22 3.96
2694 2737 3.005684 TGTCCATTCAGTTGTTTGGATGC 59.994 43.478 8.34 0.00 40.22 3.91
2695 2738 4.852134 TGTCCATTCAGTTGTTTGGATG 57.148 40.909 8.34 0.00 40.22 3.51
2696 2739 5.078949 TGATGTCCATTCAGTTGTTTGGAT 58.921 37.500 8.34 0.00 40.22 3.41
2697 2740 4.468713 TGATGTCCATTCAGTTGTTTGGA 58.531 39.130 0.00 0.00 35.93 3.53
2698 2741 4.852134 TGATGTCCATTCAGTTGTTTGG 57.148 40.909 0.00 0.00 0.00 3.28
2699 2742 6.558009 CCTATGATGTCCATTCAGTTGTTTG 58.442 40.000 0.00 0.00 36.71 2.93
2700 2743 5.126061 GCCTATGATGTCCATTCAGTTGTTT 59.874 40.000 0.00 0.00 36.71 2.83
2701 2744 4.641989 GCCTATGATGTCCATTCAGTTGTT 59.358 41.667 0.00 0.00 36.71 2.83
2702 2745 4.202441 GCCTATGATGTCCATTCAGTTGT 58.798 43.478 0.00 0.00 36.71 3.32
2703 2746 4.201657 TGCCTATGATGTCCATTCAGTTG 58.798 43.478 0.00 0.00 36.71 3.16
2704 2747 4.458397 CTGCCTATGATGTCCATTCAGTT 58.542 43.478 0.00 0.00 36.71 3.16
2705 2748 3.181447 CCTGCCTATGATGTCCATTCAGT 60.181 47.826 0.00 0.00 36.71 3.41
2706 2749 3.072038 TCCTGCCTATGATGTCCATTCAG 59.928 47.826 0.00 0.00 36.71 3.02
2707 2750 3.047857 TCCTGCCTATGATGTCCATTCA 58.952 45.455 0.00 0.00 36.71 2.57
2708 2751 3.777106 TCCTGCCTATGATGTCCATTC 57.223 47.619 0.00 0.00 36.71 2.67
2709 2752 4.524802 TTTCCTGCCTATGATGTCCATT 57.475 40.909 0.00 0.00 36.71 3.16
2710 2753 4.524802 TTTTCCTGCCTATGATGTCCAT 57.475 40.909 0.00 0.00 39.25 3.41
2711 2754 4.079844 TGATTTTCCTGCCTATGATGTCCA 60.080 41.667 0.00 0.00 0.00 4.02
2712 2755 4.464008 TGATTTTCCTGCCTATGATGTCC 58.536 43.478 0.00 0.00 0.00 4.02
2713 2756 6.096001 ACTTTGATTTTCCTGCCTATGATGTC 59.904 38.462 0.00 0.00 0.00 3.06
2714 2757 5.954150 ACTTTGATTTTCCTGCCTATGATGT 59.046 36.000 0.00 0.00 0.00 3.06
2715 2758 6.461110 ACTTTGATTTTCCTGCCTATGATG 57.539 37.500 0.00 0.00 0.00 3.07
2716 2759 7.486407 AAACTTTGATTTTCCTGCCTATGAT 57.514 32.000 0.00 0.00 0.00 2.45
2717 2760 6.916360 AAACTTTGATTTTCCTGCCTATGA 57.084 33.333 0.00 0.00 0.00 2.15
2718 2761 7.967890 AAAAACTTTGATTTTCCTGCCTATG 57.032 32.000 0.00 0.00 31.35 2.23
2749 2792 3.956199 AGTAATCAAGATGCCACAATGGG 59.044 43.478 0.00 0.00 38.19 4.00
2750 2793 4.641541 TCAGTAATCAAGATGCCACAATGG 59.358 41.667 0.00 0.00 41.55 3.16
2751 2794 5.823209 TCAGTAATCAAGATGCCACAATG 57.177 39.130 0.00 0.00 0.00 2.82
2752 2795 6.839124 TTTCAGTAATCAAGATGCCACAAT 57.161 33.333 0.00 0.00 0.00 2.71
2753 2796 6.040278 TGTTTTCAGTAATCAAGATGCCACAA 59.960 34.615 0.00 0.00 0.00 3.33
2754 2797 5.534278 TGTTTTCAGTAATCAAGATGCCACA 59.466 36.000 0.00 0.00 0.00 4.17
2755 2798 6.012658 TGTTTTCAGTAATCAAGATGCCAC 57.987 37.500 0.00 0.00 0.00 5.01
2756 2799 6.647334 TTGTTTTCAGTAATCAAGATGCCA 57.353 33.333 0.00 0.00 0.00 4.92
2757 2800 6.532657 CCATTGTTTTCAGTAATCAAGATGCC 59.467 38.462 0.00 0.00 31.03 4.40
2758 2801 7.315142 TCCATTGTTTTCAGTAATCAAGATGC 58.685 34.615 0.00 0.00 31.03 3.91
2759 2802 9.350357 CTTCCATTGTTTTCAGTAATCAAGATG 57.650 33.333 0.00 0.00 31.03 2.90
2760 2803 9.300681 TCTTCCATTGTTTTCAGTAATCAAGAT 57.699 29.630 0.00 0.00 31.03 2.40
2761 2804 8.690203 TCTTCCATTGTTTTCAGTAATCAAGA 57.310 30.769 0.00 0.00 31.03 3.02
2762 2805 9.748708 TTTCTTCCATTGTTTTCAGTAATCAAG 57.251 29.630 0.00 0.00 31.03 3.02
2766 2809 9.710900 GGATTTTCTTCCATTGTTTTCAGTAAT 57.289 29.630 0.00 0.00 35.72 1.89
2767 2810 8.700051 TGGATTTTCTTCCATTGTTTTCAGTAA 58.300 29.630 0.00 0.00 40.90 2.24
2768 2811 8.243961 TGGATTTTCTTCCATTGTTTTCAGTA 57.756 30.769 0.00 0.00 40.90 2.74
2769 2812 7.123355 TGGATTTTCTTCCATTGTTTTCAGT 57.877 32.000 0.00 0.00 40.90 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.