Multiple sequence alignment - TraesCS4D01G226200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G226200 chr4D 100.000 3052 0 0 1 3052 385516926 385519977 0.000000e+00 5637.0
1 TraesCS4D01G226200 chr4D 91.880 1133 82 7 1077 2204 385632817 385633944 0.000000e+00 1574.0
2 TraesCS4D01G226200 chr4D 84.522 827 110 14 1070 1884 385587420 385588240 0.000000e+00 802.0
3 TraesCS4D01G226200 chr4D 84.634 820 108 14 1077 1884 385700623 385701436 0.000000e+00 800.0
4 TraesCS4D01G226200 chr4D 84.039 827 112 15 1070 1884 385649851 385650669 0.000000e+00 778.0
5 TraesCS4D01G226200 chr4D 85.430 302 35 9 2274 2572 421558679 421558974 3.820000e-79 305.0
6 TraesCS4D01G226200 chr4D 81.176 85 7 2 421 505 305500943 305500868 3.290000e-05 60.2
7 TraesCS4D01G226200 chr4A 92.770 1563 76 15 676 2228 66928059 66929594 0.000000e+00 2226.0
8 TraesCS4D01G226200 chr4A 84.307 822 108 16 1075 1884 66931244 66932056 0.000000e+00 784.0
9 TraesCS4D01G226200 chr4A 79.187 418 72 13 2231 2642 616713378 616713786 3.000000e-70 276.0
10 TraesCS4D01G226200 chr4A 79.401 267 22 11 120 356 66927705 66927968 1.130000e-34 158.0
11 TraesCS4D01G226200 chr4A 90.000 120 10 1 1 118 66920426 66920545 1.470000e-33 154.0
12 TraesCS4D01G226200 chr4B 93.171 1435 72 14 739 2159 472206887 472208309 0.000000e+00 2084.0
13 TraesCS4D01G226200 chr4B 85.244 820 106 12 1070 1880 472210848 472211661 0.000000e+00 830.0
14 TraesCS4D01G226200 chr4B 77.791 824 143 29 2231 3036 560048943 560049744 3.560000e-129 472.0
15 TraesCS4D01G226200 chr4B 91.111 90 6 2 2140 2228 472208374 472208462 1.490000e-23 121.0
16 TraesCS4D01G226200 chr4B 93.220 59 4 0 683 741 472205314 472205372 1.510000e-13 87.9
17 TraesCS4D01G226200 chr2D 82.979 846 115 16 2230 3052 33361418 33362257 0.000000e+00 737.0
18 TraesCS4D01G226200 chr2D 87.671 219 25 2 453 670 54873710 54873493 1.400000e-63 254.0
19 TraesCS4D01G226200 chr2D 86.667 225 27 2 453 674 121054941 121055165 2.350000e-61 246.0
20 TraesCS4D01G226200 chr7B 83.842 786 103 12 2273 3052 203220624 203221391 0.000000e+00 726.0
21 TraesCS4D01G226200 chr3A 81.401 828 117 29 2230 3052 414828466 414829261 2.570000e-180 641.0
22 TraesCS4D01G226200 chr3A 81.401 828 117 29 2230 3052 414867381 414868176 2.570000e-180 641.0
23 TraesCS4D01G226200 chr3A 77.751 845 139 35 2230 3052 632881160 632881977 9.900000e-130 473.0
24 TraesCS4D01G226200 chr5B 81.545 764 117 10 2303 3046 656035061 656035820 2.600000e-170 608.0
25 TraesCS4D01G226200 chr5B 83.077 260 30 6 420 676 295174455 295174703 1.100000e-54 224.0
26 TraesCS4D01G226200 chr7D 81.830 754 101 22 2326 3052 551940876 551941620 4.350000e-168 601.0
27 TraesCS4D01G226200 chr7D 82.326 662 81 21 2418 3052 233065840 233066492 2.680000e-150 542.0
28 TraesCS4D01G226200 chr5D 82.810 669 89 16 2395 3052 84183086 84182433 2.640000e-160 575.0
29 TraesCS4D01G226200 chr5D 75.891 842 145 42 2235 3052 276267187 276266380 7.990000e-101 377.0
30 TraesCS4D01G226200 chr5D 78.889 450 68 18 2230 2668 514928140 514927707 2.320000e-71 279.0
31 TraesCS4D01G226200 chr5D 80.805 323 54 7 2230 2551 48851171 48851486 2.350000e-61 246.0
32 TraesCS4D01G226200 chr5D 85.776 232 27 5 453 682 436518096 436518323 1.090000e-59 241.0
33 TraesCS4D01G226200 chr6A 79.518 415 74 10 2231 2637 113518471 113518882 4.980000e-73 285.0
34 TraesCS4D01G226200 chr6A 100.000 32 0 0 421 452 498116540 498116509 3.290000e-05 60.2
35 TraesCS4D01G226200 chr7A 82.051 312 46 7 2235 2541 77416176 77416482 1.090000e-64 257.0
36 TraesCS4D01G226200 chr1D 86.134 238 28 4 453 688 222778829 222778595 5.050000e-63 252.0
37 TraesCS4D01G226200 chr1D 85.714 238 29 4 453 688 428310527 428310293 2.350000e-61 246.0
38 TraesCS4D01G226200 chr1D 85.294 238 30 4 453 688 339995263 339995029 1.090000e-59 241.0
39 TraesCS4D01G226200 chr3D 85.356 239 29 5 453 688 328910432 328910197 3.040000e-60 243.0
40 TraesCS4D01G226200 chr3D 85.294 238 29 5 454 688 161887223 161886989 1.090000e-59 241.0
41 TraesCS4D01G226200 chr3D 85.294 238 30 4 453 688 307623313 307623079 1.090000e-59 241.0
42 TraesCS4D01G226200 chr2B 80.934 257 39 2 421 677 216461037 216460791 8.630000e-46 195.0
43 TraesCS4D01G226200 chr6D 80.417 240 35 4 420 658 277745878 277746106 4.050000e-39 172.0
44 TraesCS4D01G226200 chr6D 100.000 31 0 0 422 452 261484841 261484811 1.180000e-04 58.4
45 TraesCS4D01G226200 chr6B 92.857 42 3 0 411 452 298063191 298063150 9.140000e-06 62.1
46 TraesCS4D01G226200 chrUn 100.000 31 0 0 422 452 78893102 78893072 1.180000e-04 58.4
47 TraesCS4D01G226200 chrUn 100.000 31 0 0 422 452 233271690 233271660 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G226200 chr4D 385516926 385519977 3051 False 5637.000 5637 100.000000 1 3052 1 chr4D.!!$F1 3051
1 TraesCS4D01G226200 chr4D 385632817 385633944 1127 False 1574.000 1574 91.880000 1077 2204 1 chr4D.!!$F3 1127
2 TraesCS4D01G226200 chr4D 385587420 385588240 820 False 802.000 802 84.522000 1070 1884 1 chr4D.!!$F2 814
3 TraesCS4D01G226200 chr4D 385700623 385701436 813 False 800.000 800 84.634000 1077 1884 1 chr4D.!!$F5 807
4 TraesCS4D01G226200 chr4D 385649851 385650669 818 False 778.000 778 84.039000 1070 1884 1 chr4D.!!$F4 814
5 TraesCS4D01G226200 chr4A 66927705 66932056 4351 False 1056.000 2226 85.492667 120 2228 3 chr4A.!!$F3 2108
6 TraesCS4D01G226200 chr4B 472205314 472211661 6347 False 780.725 2084 90.686500 683 2228 4 chr4B.!!$F2 1545
7 TraesCS4D01G226200 chr4B 560048943 560049744 801 False 472.000 472 77.791000 2231 3036 1 chr4B.!!$F1 805
8 TraesCS4D01G226200 chr2D 33361418 33362257 839 False 737.000 737 82.979000 2230 3052 1 chr2D.!!$F1 822
9 TraesCS4D01G226200 chr7B 203220624 203221391 767 False 726.000 726 83.842000 2273 3052 1 chr7B.!!$F1 779
10 TraesCS4D01G226200 chr3A 414828466 414829261 795 False 641.000 641 81.401000 2230 3052 1 chr3A.!!$F1 822
11 TraesCS4D01G226200 chr3A 414867381 414868176 795 False 641.000 641 81.401000 2230 3052 1 chr3A.!!$F2 822
12 TraesCS4D01G226200 chr3A 632881160 632881977 817 False 473.000 473 77.751000 2230 3052 1 chr3A.!!$F3 822
13 TraesCS4D01G226200 chr5B 656035061 656035820 759 False 608.000 608 81.545000 2303 3046 1 chr5B.!!$F2 743
14 TraesCS4D01G226200 chr7D 551940876 551941620 744 False 601.000 601 81.830000 2326 3052 1 chr7D.!!$F2 726
15 TraesCS4D01G226200 chr7D 233065840 233066492 652 False 542.000 542 82.326000 2418 3052 1 chr7D.!!$F1 634
16 TraesCS4D01G226200 chr5D 84182433 84183086 653 True 575.000 575 82.810000 2395 3052 1 chr5D.!!$R1 657
17 TraesCS4D01G226200 chr5D 276266380 276267187 807 True 377.000 377 75.891000 2235 3052 1 chr5D.!!$R2 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.030092 TGGCCCTGGCTAGGTATTCT 60.030 55.0 15.86 0.0 42.96 2.40 F
466 520 0.165944 GGAACGCACGGAACATCAAG 59.834 55.0 0.00 0.0 0.00 3.02 F
470 524 0.247814 CGCACGGAACATCAAGATGC 60.248 55.0 9.85 0.0 42.39 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 3523 0.033796 ATGGCAATGGCAGCACTACT 60.034 50.0 16.10 0.0 42.43 2.57 R
1926 3524 0.101759 CATGGCAATGGCAGCACTAC 59.898 55.0 16.10 0.0 42.43 2.73 R
2457 4164 0.801067 ATGAGGTAGACGAAACGCGC 60.801 55.0 5.73 0.0 46.04 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.132863 CCAGTTTACGACGGGGAAG 57.867 57.895 0.00 0.00 39.63 3.46
21 22 0.390735 CCAGTTTACGACGGGGAAGG 60.391 60.000 0.00 0.00 39.63 3.46
22 23 0.319405 CAGTTTACGACGGGGAAGGT 59.681 55.000 0.00 0.00 0.00 3.50
23 24 1.545582 CAGTTTACGACGGGGAAGGTA 59.454 52.381 0.00 0.00 0.00 3.08
24 25 2.029110 CAGTTTACGACGGGGAAGGTAA 60.029 50.000 0.00 0.00 0.00 2.85
25 26 2.833943 AGTTTACGACGGGGAAGGTAAT 59.166 45.455 0.00 0.00 0.00 1.89
26 27 2.931969 GTTTACGACGGGGAAGGTAATG 59.068 50.000 0.00 0.00 0.00 1.90
27 28 0.461135 TACGACGGGGAAGGTAATGC 59.539 55.000 0.00 0.00 0.00 3.56
28 29 1.262640 ACGACGGGGAAGGTAATGCT 61.263 55.000 0.00 0.00 0.00 3.79
29 30 0.107848 CGACGGGGAAGGTAATGCTT 60.108 55.000 0.00 0.00 0.00 3.91
30 31 1.379527 GACGGGGAAGGTAATGCTTG 58.620 55.000 0.00 0.00 0.00 4.01
31 32 0.988832 ACGGGGAAGGTAATGCTTGA 59.011 50.000 0.00 0.00 0.00 3.02
32 33 1.065418 ACGGGGAAGGTAATGCTTGAG 60.065 52.381 0.00 0.00 0.00 3.02
33 34 1.393603 GGGGAAGGTAATGCTTGAGC 58.606 55.000 0.00 0.00 42.50 4.26
34 35 1.017387 GGGAAGGTAATGCTTGAGCG 58.983 55.000 0.00 0.00 45.83 5.03
35 36 1.406887 GGGAAGGTAATGCTTGAGCGA 60.407 52.381 0.00 0.00 45.83 4.93
36 37 1.936547 GGAAGGTAATGCTTGAGCGAG 59.063 52.381 0.00 0.00 45.83 5.03
37 38 2.418746 GGAAGGTAATGCTTGAGCGAGA 60.419 50.000 0.00 0.00 45.83 4.04
38 39 2.301577 AGGTAATGCTTGAGCGAGAC 57.698 50.000 0.00 0.00 45.83 3.36
39 40 1.550524 AGGTAATGCTTGAGCGAGACA 59.449 47.619 0.00 0.00 45.83 3.41
40 41 1.929836 GGTAATGCTTGAGCGAGACAG 59.070 52.381 0.00 0.00 45.83 3.51
41 42 2.417379 GGTAATGCTTGAGCGAGACAGA 60.417 50.000 0.00 0.00 45.83 3.41
42 43 2.462456 AATGCTTGAGCGAGACAGAA 57.538 45.000 0.00 0.00 45.83 3.02
43 44 2.007360 ATGCTTGAGCGAGACAGAAG 57.993 50.000 0.00 0.00 45.83 2.85
44 45 0.668706 TGCTTGAGCGAGACAGAAGC 60.669 55.000 0.00 0.00 45.83 3.86
45 46 0.389687 GCTTGAGCGAGACAGAAGCT 60.390 55.000 0.00 0.00 44.80 3.74
46 47 1.135257 GCTTGAGCGAGACAGAAGCTA 60.135 52.381 0.00 0.00 41.84 3.32
47 48 2.481104 GCTTGAGCGAGACAGAAGCTAT 60.481 50.000 0.00 0.00 41.84 2.97
48 49 3.243234 GCTTGAGCGAGACAGAAGCTATA 60.243 47.826 0.00 0.00 41.84 1.31
49 50 3.972950 TGAGCGAGACAGAAGCTATAC 57.027 47.619 0.00 0.00 41.84 1.47
50 51 3.279434 TGAGCGAGACAGAAGCTATACA 58.721 45.455 0.00 0.00 41.84 2.29
51 52 3.065510 TGAGCGAGACAGAAGCTATACAC 59.934 47.826 0.00 0.00 41.84 2.90
52 53 3.017442 AGCGAGACAGAAGCTATACACA 58.983 45.455 0.00 0.00 39.74 3.72
53 54 3.109619 GCGAGACAGAAGCTATACACAC 58.890 50.000 0.00 0.00 0.00 3.82
54 55 3.181495 GCGAGACAGAAGCTATACACACT 60.181 47.826 0.00 0.00 0.00 3.55
55 56 4.035324 GCGAGACAGAAGCTATACACACTA 59.965 45.833 0.00 0.00 0.00 2.74
56 57 5.278071 GCGAGACAGAAGCTATACACACTAT 60.278 44.000 0.00 0.00 0.00 2.12
57 58 6.073167 GCGAGACAGAAGCTATACACACTATA 60.073 42.308 0.00 0.00 0.00 1.31
58 59 7.520131 GCGAGACAGAAGCTATACACACTATAA 60.520 40.741 0.00 0.00 0.00 0.98
59 60 8.012809 CGAGACAGAAGCTATACACACTATAAG 58.987 40.741 0.00 0.00 0.00 1.73
60 61 7.653647 AGACAGAAGCTATACACACTATAAGC 58.346 38.462 0.00 0.00 0.00 3.09
61 62 6.439599 ACAGAAGCTATACACACTATAAGCG 58.560 40.000 0.00 0.00 0.00 4.68
62 63 6.262496 ACAGAAGCTATACACACTATAAGCGA 59.738 38.462 0.00 0.00 0.00 4.93
63 64 6.799441 CAGAAGCTATACACACTATAAGCGAG 59.201 42.308 0.00 0.00 0.00 5.03
64 65 6.711194 AGAAGCTATACACACTATAAGCGAGA 59.289 38.462 0.00 0.00 0.00 4.04
65 66 7.392113 AGAAGCTATACACACTATAAGCGAGAT 59.608 37.037 0.00 0.00 0.00 2.75
66 67 8.563123 AAGCTATACACACTATAAGCGAGATA 57.437 34.615 0.00 0.00 0.00 1.98
67 68 8.740123 AGCTATACACACTATAAGCGAGATAT 57.260 34.615 0.00 0.00 0.00 1.63
68 69 9.833917 AGCTATACACACTATAAGCGAGATATA 57.166 33.333 0.00 0.00 0.00 0.86
72 73 9.893634 ATACACACTATAAGCGAGATATAGTCT 57.106 33.333 10.47 0.81 42.07 3.24
73 74 8.624367 ACACACTATAAGCGAGATATAGTCTT 57.376 34.615 10.47 0.00 42.07 3.01
74 75 8.723311 ACACACTATAAGCGAGATATAGTCTTC 58.277 37.037 10.47 0.00 42.07 2.87
75 76 7.900864 CACACTATAAGCGAGATATAGTCTTCG 59.099 40.741 10.47 0.00 42.07 3.79
76 77 6.902948 CACTATAAGCGAGATATAGTCTTCGC 59.097 42.308 9.44 9.44 42.07 4.70
77 78 5.881777 ATAAGCGAGATATAGTCTTCGCA 57.118 39.130 18.17 0.95 46.44 5.10
78 79 3.546002 AGCGAGATATAGTCTTCGCAC 57.454 47.619 18.17 0.00 46.44 5.34
79 80 2.096169 AGCGAGATATAGTCTTCGCACG 60.096 50.000 18.17 0.00 46.44 5.34
80 81 2.235020 CGAGATATAGTCTTCGCACGC 58.765 52.381 0.00 0.00 37.29 5.34
81 82 2.235020 GAGATATAGTCTTCGCACGCG 58.765 52.381 3.53 3.53 37.29 6.01
82 83 1.602851 AGATATAGTCTTCGCACGCGT 59.397 47.619 5.58 5.58 40.74 6.01
83 84 2.804527 AGATATAGTCTTCGCACGCGTA 59.195 45.455 13.44 0.32 40.74 4.42
84 85 3.436015 AGATATAGTCTTCGCACGCGTAT 59.564 43.478 13.44 0.07 40.74 3.06
85 86 2.033793 ATAGTCTTCGCACGCGTATC 57.966 50.000 13.44 5.95 40.74 2.24
86 87 0.315625 TAGTCTTCGCACGCGTATCG 60.316 55.000 21.99 21.99 45.38 2.92
100 101 2.315901 CGTATCGCTCGCAATGATACA 58.684 47.619 10.97 0.00 42.83 2.29
101 102 2.089121 CGTATCGCTCGCAATGATACAC 59.911 50.000 10.97 0.00 42.83 2.90
102 103 2.223537 ATCGCTCGCAATGATACACA 57.776 45.000 0.00 0.00 0.00 3.72
103 104 2.223537 TCGCTCGCAATGATACACAT 57.776 45.000 0.00 0.00 41.45 3.21
104 105 2.127251 TCGCTCGCAATGATACACATC 58.873 47.619 0.00 0.00 38.38 3.06
105 106 1.860326 CGCTCGCAATGATACACATCA 59.140 47.619 0.00 0.00 45.15 3.07
106 107 2.097056 CGCTCGCAATGATACACATCAG 60.097 50.000 0.00 0.00 44.30 2.90
107 108 2.349249 GCTCGCAATGATACACATCAGC 60.349 50.000 0.00 0.00 44.30 4.26
109 110 1.658373 CGCAATGATACACATCAGCGC 60.658 52.381 0.00 0.00 46.98 5.92
110 111 1.334419 GCAATGATACACATCAGCGCC 60.334 52.381 2.29 0.00 44.30 6.53
111 112 1.265095 CAATGATACACATCAGCGCCC 59.735 52.381 2.29 0.00 44.30 6.13
112 113 0.601046 ATGATACACATCAGCGCCCG 60.601 55.000 2.29 0.00 44.30 6.13
113 114 1.956170 GATACACATCAGCGCCCGG 60.956 63.158 2.29 0.00 0.00 5.73
114 115 2.644555 GATACACATCAGCGCCCGGT 62.645 60.000 2.29 0.00 0.00 5.28
115 116 2.252072 ATACACATCAGCGCCCGGTT 62.252 55.000 2.29 0.00 0.00 4.44
116 117 2.457743 TACACATCAGCGCCCGGTTT 62.458 55.000 2.29 0.00 0.00 3.27
117 118 1.743623 CACATCAGCGCCCGGTTTA 60.744 57.895 2.29 0.00 0.00 2.01
118 119 1.095228 CACATCAGCGCCCGGTTTAT 61.095 55.000 2.29 0.00 0.00 1.40
119 120 0.466543 ACATCAGCGCCCGGTTTATA 59.533 50.000 2.29 0.00 0.00 0.98
120 121 1.148310 CATCAGCGCCCGGTTTATAG 58.852 55.000 2.29 0.00 0.00 1.31
121 122 0.034896 ATCAGCGCCCGGTTTATAGG 59.965 55.000 2.29 0.00 0.00 2.57
128 129 1.725803 CCCGGTTTATAGGGTAGCCT 58.274 55.000 19.22 19.22 42.67 4.58
132 133 4.262765 CCCGGTTTATAGGGTAGCCTAAAG 60.263 50.000 23.92 11.42 42.67 1.85
179 180 4.792804 GCTGGGCTCTGGGCTGTC 62.793 72.222 0.00 0.00 41.46 3.51
182 183 4.767255 GGGCTCTGGGCTGTCACG 62.767 72.222 0.00 0.00 41.46 4.35
188 189 1.302033 CTGGGCTGTCACGCTTCTT 60.302 57.895 0.00 0.00 0.00 2.52
204 205 3.185203 TTGGCTTGGTCCAGGGCT 61.185 61.111 25.25 0.00 36.97 5.19
222 223 0.398318 CTGGCCCTGGCTAGGTATTC 59.602 60.000 15.86 2.14 44.42 1.75
223 224 0.030092 TGGCCCTGGCTAGGTATTCT 60.030 55.000 15.86 0.00 42.96 2.40
224 225 0.398318 GGCCCTGGCTAGGTATTCTG 59.602 60.000 15.86 0.00 42.96 3.02
249 268 5.878332 AAAAAGGTGCTCCAAAACAAAAG 57.122 34.783 7.70 0.00 35.89 2.27
250 269 4.817318 AAAGGTGCTCCAAAACAAAAGA 57.183 36.364 7.70 0.00 35.89 2.52
252 271 2.695147 AGGTGCTCCAAAACAAAAGAGG 59.305 45.455 7.70 0.00 35.89 3.69
253 272 2.693074 GGTGCTCCAAAACAAAAGAGGA 59.307 45.455 0.00 0.00 0.00 3.71
254 273 3.243535 GGTGCTCCAAAACAAAAGAGGAG 60.244 47.826 0.00 0.00 46.71 3.69
263 282 3.196207 AAAAGAGGAGCTGCGGCCA 62.196 57.895 15.55 0.00 39.73 5.36
265 284 2.697147 AAAGAGGAGCTGCGGCCAAA 62.697 55.000 15.55 0.00 39.73 3.28
269 288 2.256461 GAGCTGCGGCCAAACTTG 59.744 61.111 15.55 0.00 39.73 3.16
278 297 3.869481 CCAAACTTGGTGGGTGGG 58.131 61.111 0.00 0.00 43.43 4.61
283 302 4.994756 CTTGGTGGGTGGGGTGGC 62.995 72.222 0.00 0.00 0.00 5.01
305 337 1.606531 GGAGGAAGCCTGCTGTGAT 59.393 57.895 0.00 0.00 38.98 3.06
324 356 1.817357 TTTCTCTAGTCGCGTGAGGA 58.183 50.000 5.77 2.00 0.00 3.71
328 360 0.535797 TCTAGTCGCGTGAGGAGAGA 59.464 55.000 5.77 0.00 0.00 3.10
330 362 1.944024 CTAGTCGCGTGAGGAGAGAAT 59.056 52.381 5.77 0.00 0.00 2.40
356 388 3.073503 GGATGGATGGATGTTGATGGAGA 59.926 47.826 0.00 0.00 0.00 3.71
401 455 6.318648 TGCCTCTAGTTCATATTTTCGCAAAT 59.681 34.615 0.00 0.00 36.52 2.32
437 491 4.439968 GCTAAAACTAGCAAGATACCCGT 58.560 43.478 0.00 0.00 42.39 5.28
438 492 4.270325 GCTAAAACTAGCAAGATACCCGTG 59.730 45.833 0.00 0.00 42.39 4.94
442 496 3.884900 GCAAGATACCCGTGCGTT 58.115 55.556 0.00 0.00 40.20 4.84
443 497 1.423845 GCAAGATACCCGTGCGTTG 59.576 57.895 0.00 0.00 40.20 4.10
444 498 1.423845 CAAGATACCCGTGCGTTGC 59.576 57.895 0.00 0.00 0.00 4.17
445 499 1.004320 AAGATACCCGTGCGTTGCA 60.004 52.632 0.00 0.00 35.60 4.08
464 518 3.960237 GGAACGCACGGAACATCA 58.040 55.556 0.00 0.00 0.00 3.07
465 519 2.240230 GGAACGCACGGAACATCAA 58.760 52.632 0.00 0.00 0.00 2.57
466 520 0.165944 GGAACGCACGGAACATCAAG 59.834 55.000 0.00 0.00 0.00 3.02
467 521 1.144969 GAACGCACGGAACATCAAGA 58.855 50.000 0.00 0.00 0.00 3.02
468 522 1.732259 GAACGCACGGAACATCAAGAT 59.268 47.619 0.00 0.00 0.00 2.40
469 523 1.078709 ACGCACGGAACATCAAGATG 58.921 50.000 8.45 8.45 44.15 2.90
470 524 0.247814 CGCACGGAACATCAAGATGC 60.248 55.000 9.85 0.00 42.39 3.91
471 525 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
472 526 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
473 527 2.159338 GCACGGAACATCAAGATGCATT 60.159 45.455 9.85 0.00 42.39 3.56
474 528 3.674138 GCACGGAACATCAAGATGCATTT 60.674 43.478 9.85 0.00 42.39 2.32
475 529 4.438608 GCACGGAACATCAAGATGCATTTA 60.439 41.667 9.85 0.00 42.39 1.40
476 530 5.734220 GCACGGAACATCAAGATGCATTTAT 60.734 40.000 9.85 0.00 42.39 1.40
477 531 6.513230 GCACGGAACATCAAGATGCATTTATA 60.513 38.462 9.85 0.00 42.39 0.98
478 532 7.587629 CACGGAACATCAAGATGCATTTATAT 58.412 34.615 9.85 0.00 42.39 0.86
479 533 7.536281 CACGGAACATCAAGATGCATTTATATG 59.464 37.037 9.85 5.48 42.39 1.78
480 534 7.445096 ACGGAACATCAAGATGCATTTATATGA 59.555 33.333 14.86 9.71 42.39 2.15
481 535 7.961283 CGGAACATCAAGATGCATTTATATGAG 59.039 37.037 14.86 7.08 42.39 2.90
482 536 9.006839 GGAACATCAAGATGCATTTATATGAGA 57.993 33.333 14.86 1.95 42.39 3.27
484 538 8.563123 ACATCAAGATGCATTTATATGAGAGG 57.437 34.615 14.86 5.02 42.39 3.69
485 539 8.162085 ACATCAAGATGCATTTATATGAGAGGT 58.838 33.333 14.86 5.49 42.39 3.85
486 540 9.011095 CATCAAGATGCATTTATATGAGAGGTT 57.989 33.333 0.00 0.00 33.37 3.50
487 541 8.985315 TCAAGATGCATTTATATGAGAGGTTT 57.015 30.769 0.00 0.00 33.37 3.27
501 555 9.927081 ATATGAGAGGTTTATTTTGTGGAAGAT 57.073 29.630 0.00 0.00 0.00 2.40
503 557 9.753674 ATGAGAGGTTTATTTTGTGGAAGATAA 57.246 29.630 0.00 0.00 0.00 1.75
504 558 9.231297 TGAGAGGTTTATTTTGTGGAAGATAAG 57.769 33.333 0.00 0.00 0.00 1.73
505 559 8.581253 AGAGGTTTATTTTGTGGAAGATAAGG 57.419 34.615 0.00 0.00 0.00 2.69
506 560 8.390921 AGAGGTTTATTTTGTGGAAGATAAGGA 58.609 33.333 0.00 0.00 0.00 3.36
507 561 9.190317 GAGGTTTATTTTGTGGAAGATAAGGAT 57.810 33.333 0.00 0.00 0.00 3.24
508 562 8.971073 AGGTTTATTTTGTGGAAGATAAGGATG 58.029 33.333 0.00 0.00 0.00 3.51
509 563 8.966868 GGTTTATTTTGTGGAAGATAAGGATGA 58.033 33.333 0.00 0.00 0.00 2.92
512 566 9.973661 TTATTTTGTGGAAGATAAGGATGAAGA 57.026 29.630 0.00 0.00 0.00 2.87
513 567 8.884124 ATTTTGTGGAAGATAAGGATGAAGAA 57.116 30.769 0.00 0.00 0.00 2.52
514 568 7.928307 TTTGTGGAAGATAAGGATGAAGAAG 57.072 36.000 0.00 0.00 0.00 2.85
515 569 5.994250 TGTGGAAGATAAGGATGAAGAAGG 58.006 41.667 0.00 0.00 0.00 3.46
516 570 5.726308 TGTGGAAGATAAGGATGAAGAAGGA 59.274 40.000 0.00 0.00 0.00 3.36
517 571 6.215431 TGTGGAAGATAAGGATGAAGAAGGAA 59.785 38.462 0.00 0.00 0.00 3.36
518 572 7.112779 GTGGAAGATAAGGATGAAGAAGGAAA 58.887 38.462 0.00 0.00 0.00 3.13
519 573 7.281999 GTGGAAGATAAGGATGAAGAAGGAAAG 59.718 40.741 0.00 0.00 0.00 2.62
520 574 7.182749 TGGAAGATAAGGATGAAGAAGGAAAGA 59.817 37.037 0.00 0.00 0.00 2.52
521 575 7.497579 GGAAGATAAGGATGAAGAAGGAAAGAC 59.502 40.741 0.00 0.00 0.00 3.01
522 576 7.747809 AGATAAGGATGAAGAAGGAAAGACT 57.252 36.000 0.00 0.00 0.00 3.24
523 577 8.156822 AGATAAGGATGAAGAAGGAAAGACTT 57.843 34.615 0.00 0.00 0.00 3.01
524 578 8.610369 AGATAAGGATGAAGAAGGAAAGACTTT 58.390 33.333 0.00 0.00 0.00 2.66
525 579 9.892130 GATAAGGATGAAGAAGGAAAGACTTTA 57.108 33.333 0.00 0.00 0.00 1.85
527 581 8.800370 AAGGATGAAGAAGGAAAGACTTTATC 57.200 34.615 0.00 0.00 36.55 1.75
528 582 8.156822 AGGATGAAGAAGGAAAGACTTTATCT 57.843 34.615 0.00 2.86 40.46 1.98
529 583 8.046107 AGGATGAAGAAGGAAAGACTTTATCTG 58.954 37.037 0.00 0.00 37.88 2.90
530 584 7.201688 GGATGAAGAAGGAAAGACTTTATCTGC 60.202 40.741 0.00 4.93 37.88 4.26
531 585 6.533730 TGAAGAAGGAAAGACTTTATCTGCA 58.466 36.000 11.73 11.73 37.88 4.41
532 586 6.998074 TGAAGAAGGAAAGACTTTATCTGCAA 59.002 34.615 12.76 2.44 37.88 4.08
533 587 7.502226 TGAAGAAGGAAAGACTTTATCTGCAAA 59.498 33.333 12.76 0.00 37.88 3.68
534 588 8.414629 AAGAAGGAAAGACTTTATCTGCAAAT 57.585 30.769 0.00 0.00 37.88 2.32
535 589 7.824672 AGAAGGAAAGACTTTATCTGCAAATG 58.175 34.615 0.00 0.00 37.88 2.32
536 590 7.449704 AGAAGGAAAGACTTTATCTGCAAATGT 59.550 33.333 0.00 0.00 37.88 2.71
537 591 6.917533 AGGAAAGACTTTATCTGCAAATGTG 58.082 36.000 0.00 0.00 37.88 3.21
538 592 6.716628 AGGAAAGACTTTATCTGCAAATGTGA 59.283 34.615 0.00 0.00 37.88 3.58
539 593 7.231317 AGGAAAGACTTTATCTGCAAATGTGAA 59.769 33.333 0.00 0.00 37.88 3.18
540 594 7.540055 GGAAAGACTTTATCTGCAAATGTGAAG 59.460 37.037 0.00 0.00 37.88 3.02
541 595 7.750229 AAGACTTTATCTGCAAATGTGAAGA 57.250 32.000 0.00 0.00 44.02 2.87
542 596 7.375106 AGACTTTATCTGCAAATGTGAAGAG 57.625 36.000 0.00 0.00 43.08 2.85
543 597 6.939163 AGACTTTATCTGCAAATGTGAAGAGT 59.061 34.615 0.00 0.00 43.08 3.24
544 598 6.906659 ACTTTATCTGCAAATGTGAAGAGTG 58.093 36.000 0.00 0.00 43.08 3.51
545 599 6.488006 ACTTTATCTGCAAATGTGAAGAGTGT 59.512 34.615 0.00 0.00 43.08 3.55
546 600 6.882610 TTATCTGCAAATGTGAAGAGTGTT 57.117 33.333 0.00 0.00 43.08 3.32
547 601 4.556942 TCTGCAAATGTGAAGAGTGTTG 57.443 40.909 0.00 0.00 34.14 3.33
548 602 3.947196 TCTGCAAATGTGAAGAGTGTTGT 59.053 39.130 0.00 0.00 34.14 3.32
549 603 4.031418 TGCAAATGTGAAGAGTGTTGTG 57.969 40.909 0.00 0.00 0.00 3.33
550 604 3.181488 TGCAAATGTGAAGAGTGTTGTGG 60.181 43.478 0.00 0.00 0.00 4.17
551 605 3.796504 GCAAATGTGAAGAGTGTTGTGGG 60.797 47.826 0.00 0.00 0.00 4.61
552 606 3.297134 AATGTGAAGAGTGTTGTGGGT 57.703 42.857 0.00 0.00 0.00 4.51
553 607 4.431416 AATGTGAAGAGTGTTGTGGGTA 57.569 40.909 0.00 0.00 0.00 3.69
554 608 4.640771 ATGTGAAGAGTGTTGTGGGTAT 57.359 40.909 0.00 0.00 0.00 2.73
555 609 5.755409 ATGTGAAGAGTGTTGTGGGTATA 57.245 39.130 0.00 0.00 0.00 1.47
556 610 5.755409 TGTGAAGAGTGTTGTGGGTATAT 57.245 39.130 0.00 0.00 0.00 0.86
557 611 6.121776 TGTGAAGAGTGTTGTGGGTATATT 57.878 37.500 0.00 0.00 0.00 1.28
558 612 6.539173 TGTGAAGAGTGTTGTGGGTATATTT 58.461 36.000 0.00 0.00 0.00 1.40
559 613 7.001674 TGTGAAGAGTGTTGTGGGTATATTTT 58.998 34.615 0.00 0.00 0.00 1.82
560 614 7.504238 TGTGAAGAGTGTTGTGGGTATATTTTT 59.496 33.333 0.00 0.00 0.00 1.94
561 615 7.807907 GTGAAGAGTGTTGTGGGTATATTTTTG 59.192 37.037 0.00 0.00 0.00 2.44
562 616 6.267496 AGAGTGTTGTGGGTATATTTTTGC 57.733 37.500 0.00 0.00 0.00 3.68
563 617 5.772672 AGAGTGTTGTGGGTATATTTTTGCA 59.227 36.000 0.00 0.00 0.00 4.08
564 618 6.266558 AGAGTGTTGTGGGTATATTTTTGCAA 59.733 34.615 0.00 0.00 0.00 4.08
565 619 6.821388 AGTGTTGTGGGTATATTTTTGCAAA 58.179 32.000 8.05 8.05 0.00 3.68
566 620 7.275920 AGTGTTGTGGGTATATTTTTGCAAAA 58.724 30.769 20.46 20.46 0.00 2.44
567 621 7.936301 AGTGTTGTGGGTATATTTTTGCAAAAT 59.064 29.630 24.39 16.25 0.00 1.82
568 622 8.563732 GTGTTGTGGGTATATTTTTGCAAAATT 58.436 29.630 24.39 21.79 0.00 1.82
569 623 9.778741 TGTTGTGGGTATATTTTTGCAAAATTA 57.221 25.926 24.39 23.07 0.00 1.40
604 658 9.841880 TTCTTTTTATCCGTCAGATATAGATCG 57.158 33.333 0.00 0.00 37.31 3.69
605 659 8.459635 TCTTTTTATCCGTCAGATATAGATCGG 58.540 37.037 0.00 0.00 37.31 4.18
610 664 3.408288 GTCAGATATAGATCGGACGGC 57.592 52.381 13.57 0.00 44.04 5.68
611 665 2.097791 GTCAGATATAGATCGGACGGCC 59.902 54.545 13.57 0.00 44.04 6.13
612 666 2.026169 TCAGATATAGATCGGACGGCCT 60.026 50.000 5.33 0.00 37.15 5.19
613 667 3.199289 TCAGATATAGATCGGACGGCCTA 59.801 47.826 5.33 0.00 37.15 3.93
614 668 4.138290 CAGATATAGATCGGACGGCCTAT 58.862 47.826 5.33 0.00 37.15 2.57
615 669 5.071384 TCAGATATAGATCGGACGGCCTATA 59.929 44.000 5.33 0.25 37.15 1.31
616 670 5.941058 CAGATATAGATCGGACGGCCTATAT 59.059 44.000 5.33 6.08 37.45 0.86
617 671 6.431543 CAGATATAGATCGGACGGCCTATATT 59.568 42.308 5.33 0.00 35.87 1.28
618 672 4.920640 ATAGATCGGACGGCCTATATTG 57.079 45.455 5.33 0.00 0.00 1.90
619 673 1.204941 AGATCGGACGGCCTATATTGC 59.795 52.381 5.33 0.00 0.00 3.56
620 674 0.973632 ATCGGACGGCCTATATTGCA 59.026 50.000 5.33 0.00 0.00 4.08
621 675 0.317160 TCGGACGGCCTATATTGCAG 59.683 55.000 5.33 0.00 0.00 4.41
622 676 0.317160 CGGACGGCCTATATTGCAGA 59.683 55.000 5.33 0.00 0.00 4.26
623 677 1.270094 CGGACGGCCTATATTGCAGAA 60.270 52.381 5.33 0.00 0.00 3.02
624 678 2.612972 CGGACGGCCTATATTGCAGAAT 60.613 50.000 5.33 0.00 0.00 2.40
625 679 2.744202 GGACGGCCTATATTGCAGAATG 59.256 50.000 0.00 0.00 40.87 2.67
626 680 3.557054 GGACGGCCTATATTGCAGAATGA 60.557 47.826 0.00 0.00 39.69 2.57
627 681 3.403038 ACGGCCTATATTGCAGAATGAC 58.597 45.455 0.00 0.00 39.69 3.06
628 682 3.181455 ACGGCCTATATTGCAGAATGACA 60.181 43.478 0.00 0.00 39.69 3.58
629 683 3.434641 CGGCCTATATTGCAGAATGACAG 59.565 47.826 0.00 0.00 39.69 3.51
630 684 3.755378 GGCCTATATTGCAGAATGACAGG 59.245 47.826 0.00 0.00 39.69 4.00
631 685 4.392940 GCCTATATTGCAGAATGACAGGT 58.607 43.478 0.00 0.00 39.69 4.00
632 686 5.513094 GGCCTATATTGCAGAATGACAGGTA 60.513 44.000 0.00 0.00 39.69 3.08
633 687 5.409826 GCCTATATTGCAGAATGACAGGTAC 59.590 44.000 0.00 0.00 39.69 3.34
634 688 6.524734 CCTATATTGCAGAATGACAGGTACA 58.475 40.000 0.00 0.00 39.69 2.90
635 689 7.164122 CCTATATTGCAGAATGACAGGTACAT 58.836 38.462 0.00 0.00 39.69 2.29
636 690 7.332926 CCTATATTGCAGAATGACAGGTACATC 59.667 40.741 0.00 0.00 39.69 3.06
637 691 3.979101 TGCAGAATGACAGGTACATCA 57.021 42.857 0.00 0.00 39.69 3.07
638 692 4.492494 TGCAGAATGACAGGTACATCAT 57.508 40.909 0.00 0.00 39.69 2.45
639 693 4.445453 TGCAGAATGACAGGTACATCATC 58.555 43.478 6.89 0.00 39.69 2.92
640 694 4.080975 TGCAGAATGACAGGTACATCATCA 60.081 41.667 6.89 1.11 39.69 3.07
641 695 5.061853 GCAGAATGACAGGTACATCATCAT 58.938 41.667 6.89 3.22 39.69 2.45
642 696 5.178996 GCAGAATGACAGGTACATCATCATC 59.821 44.000 4.69 2.46 39.69 2.92
643 697 6.285990 CAGAATGACAGGTACATCATCATCA 58.714 40.000 4.69 0.00 39.69 3.07
644 698 6.935208 CAGAATGACAGGTACATCATCATCAT 59.065 38.462 4.69 0.00 39.69 2.45
645 699 7.117956 CAGAATGACAGGTACATCATCATCATC 59.882 40.741 4.69 1.39 39.69 2.92
646 700 5.874897 TGACAGGTACATCATCATCATCA 57.125 39.130 0.00 0.00 0.00 3.07
647 701 6.237887 TGACAGGTACATCATCATCATCAA 57.762 37.500 0.00 0.00 0.00 2.57
648 702 6.051074 TGACAGGTACATCATCATCATCAAC 58.949 40.000 0.00 0.00 0.00 3.18
649 703 6.126968 TGACAGGTACATCATCATCATCAACT 60.127 38.462 0.00 0.00 0.00 3.16
650 704 6.286758 ACAGGTACATCATCATCATCAACTC 58.713 40.000 0.00 0.00 0.00 3.01
651 705 6.099413 ACAGGTACATCATCATCATCAACTCT 59.901 38.462 0.00 0.00 0.00 3.24
652 706 6.424207 CAGGTACATCATCATCATCAACTCTG 59.576 42.308 0.00 0.00 0.00 3.35
653 707 6.099413 AGGTACATCATCATCATCAACTCTGT 59.901 38.462 0.00 0.00 0.00 3.41
654 708 6.423302 GGTACATCATCATCATCAACTCTGTC 59.577 42.308 0.00 0.00 0.00 3.51
655 709 6.236558 ACATCATCATCATCAACTCTGTCT 57.763 37.500 0.00 0.00 0.00 3.41
656 710 6.651086 ACATCATCATCATCAACTCTGTCTT 58.349 36.000 0.00 0.00 0.00 3.01
657 711 7.110810 ACATCATCATCATCAACTCTGTCTTT 58.889 34.615 0.00 0.00 0.00 2.52
658 712 7.610692 ACATCATCATCATCAACTCTGTCTTTT 59.389 33.333 0.00 0.00 0.00 2.27
659 713 9.106070 CATCATCATCATCAACTCTGTCTTTTA 57.894 33.333 0.00 0.00 0.00 1.52
660 714 9.848710 ATCATCATCATCAACTCTGTCTTTTAT 57.151 29.630 0.00 0.00 0.00 1.40
666 720 8.709386 TCATCAACTCTGTCTTTTATAAGAGC 57.291 34.615 0.00 0.00 40.95 4.09
667 721 8.314021 TCATCAACTCTGTCTTTTATAAGAGCA 58.686 33.333 0.00 0.39 40.95 4.26
668 722 8.602328 CATCAACTCTGTCTTTTATAAGAGCAG 58.398 37.037 15.30 15.30 40.95 4.24
669 723 7.896811 TCAACTCTGTCTTTTATAAGAGCAGA 58.103 34.615 19.44 19.44 40.95 4.26
670 724 8.367911 TCAACTCTGTCTTTTATAAGAGCAGAA 58.632 33.333 20.26 10.55 41.92 3.02
671 725 9.160496 CAACTCTGTCTTTTATAAGAGCAGAAT 57.840 33.333 20.26 13.69 41.92 2.40
708 762 1.446272 CCTCGAACTTCGGTGGAGC 60.446 63.158 11.21 0.00 40.88 4.70
776 2347 5.652744 GAAGTTGACTTCTTGCGTAAAGA 57.347 39.130 14.92 0.00 46.59 2.52
874 2447 3.369147 CGAGAATTCGTGCTCTTTGTGAT 59.631 43.478 0.00 0.00 41.84 3.06
910 2483 6.560003 TGATACTACATTGGAACAGGTGAT 57.440 37.500 0.00 0.00 42.39 3.06
925 2498 3.631686 CAGGTGATTTCAACCACTCAACA 59.368 43.478 0.00 0.00 32.98 3.33
929 2502 5.451798 GGTGATTTCAACCACTCAACATTGT 60.452 40.000 0.00 0.00 33.99 2.71
1021 2601 0.823460 ACAAACACAACAAGCCCTGG 59.177 50.000 0.00 0.00 0.00 4.45
1024 2604 2.203538 CACAACAAGCCCTGGCCT 60.204 61.111 3.32 0.00 43.17 5.19
1025 2605 1.833934 CACAACAAGCCCTGGCCTT 60.834 57.895 3.32 0.00 43.17 4.35
1026 2606 1.833934 ACAACAAGCCCTGGCCTTG 60.834 57.895 15.31 15.31 43.17 3.61
1063 2643 3.948735 GGAGACCACGAAATCCCAA 57.051 52.632 0.00 0.00 0.00 4.12
1067 2647 1.144093 AGACCACGAAATCCCAAACCA 59.856 47.619 0.00 0.00 0.00 3.67
1068 2648 2.167662 GACCACGAAATCCCAAACCAT 58.832 47.619 0.00 0.00 0.00 3.55
1132 2712 1.227999 CGCTGGCGTTTCTTCTCCAA 61.228 55.000 6.83 0.00 34.35 3.53
1330 2910 0.523757 GAGCCGACTTCTGCTACGTC 60.524 60.000 0.00 0.00 36.55 4.34
1354 2934 3.827898 CTCGACTCCACGGAGCCC 61.828 72.222 13.16 4.69 45.54 5.19
1419 2999 2.808958 GCACAGTCAACACGTGCGT 61.809 57.895 17.22 0.00 40.58 5.24
1719 3299 0.606673 GGACAGGAACCAGAAGGCAC 60.607 60.000 0.00 0.00 39.06 5.01
1747 3345 2.750350 GGTGTAGCACAGCCCACT 59.250 61.111 7.09 0.00 40.47 4.00
1925 3523 1.148273 GGAGTTGCACTGGGTGTCA 59.852 57.895 0.00 0.00 35.75 3.58
1982 3586 3.740397 TGTGCATGCGCTCTTGCC 61.740 61.111 29.79 15.44 41.20 4.52
2050 3655 1.678101 GCAATAAGCCAGGGATGTGTC 59.322 52.381 0.00 0.00 37.23 3.67
2126 3733 5.357878 GGATTGCATTGTATCTTGAGACCAA 59.642 40.000 0.00 0.00 0.00 3.67
2219 3911 5.046231 CCCTCTTAGGCCCTAACTGAATATC 60.046 48.000 0.00 0.00 32.73 1.63
2221 3913 6.271159 CCTCTTAGGCCCTAACTGAATATCTT 59.729 42.308 0.00 0.00 0.00 2.40
2222 3914 7.067496 TCTTAGGCCCTAACTGAATATCTTG 57.933 40.000 0.00 0.00 0.00 3.02
2224 3916 3.395941 AGGCCCTAACTGAATATCTTGGG 59.604 47.826 0.00 0.00 36.63 4.12
2225 3917 3.394606 GGCCCTAACTGAATATCTTGGGA 59.605 47.826 0.00 0.00 35.64 4.37
2226 3918 4.390264 GCCCTAACTGAATATCTTGGGAC 58.610 47.826 0.00 0.00 35.64 4.46
2227 3919 4.141482 GCCCTAACTGAATATCTTGGGACA 60.141 45.833 0.00 0.00 35.64 4.02
2228 3920 5.368989 CCCTAACTGAATATCTTGGGACAC 58.631 45.833 0.00 0.00 39.29 3.67
2246 3938 1.134580 CACAAGATCATCTCCAGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
2260 3952 4.974721 CCGTGCCCCCAACAAGCT 62.975 66.667 0.00 0.00 0.00 3.74
2264 3956 2.118294 GCCCCCAACAAGCTCCTT 59.882 61.111 0.00 0.00 0.00 3.36
2333 4039 0.602562 CAGAAGCCCATTTTTCGCCA 59.397 50.000 0.00 0.00 0.00 5.69
2427 4134 3.799963 GGGAAAAGTTTTTGACGCGAAAT 59.200 39.130 15.93 0.00 0.00 2.17
2457 4164 4.867599 GCCGAGTTAGCGACCGGG 62.868 72.222 6.32 0.00 40.35 5.73
2488 4195 0.899720 TACCTCATCGCCTCGGTTTT 59.100 50.000 0.00 0.00 0.00 2.43
2511 4218 1.409661 GCGGGGAATCAATACCAAGGT 60.410 52.381 0.00 0.00 0.00 3.50
2543 4250 4.643784 GTCAGCCTTTCATTGATTCCTCAT 59.356 41.667 0.00 0.00 0.00 2.90
2595 4775 2.049433 GTACACACGTCTGCCGCT 60.049 61.111 0.00 0.00 41.42 5.52
2596 4776 1.663702 GTACACACGTCTGCCGCTT 60.664 57.895 0.00 0.00 41.42 4.68
2609 4789 2.558286 CCGCTTCCCCGTCGCTATA 61.558 63.158 0.00 0.00 0.00 1.31
2652 4832 2.049063 GACGCACACTCCTTCGCT 60.049 61.111 0.00 0.00 0.00 4.93
2751 4944 0.179073 CACCGATGGGAGAGCGATTT 60.179 55.000 0.00 0.00 34.57 2.17
2853 7249 1.153369 CCCGACATCGCCTGACATT 60.153 57.895 0.00 0.00 38.18 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.435410 CCCCGTCGTAAACTGGGC 60.435 66.667 0.00 0.00 44.44 5.36
2 3 0.390735 CCTTCCCCGTCGTAAACTGG 60.391 60.000 0.00 0.00 32.28 4.00
4 5 1.923356 TACCTTCCCCGTCGTAAACT 58.077 50.000 0.00 0.00 0.00 2.66
5 6 2.741759 TTACCTTCCCCGTCGTAAAC 57.258 50.000 0.00 0.00 0.00 2.01
6 7 2.677613 GCATTACCTTCCCCGTCGTAAA 60.678 50.000 0.00 0.00 0.00 2.01
7 8 1.134729 GCATTACCTTCCCCGTCGTAA 60.135 52.381 0.00 0.00 0.00 3.18
8 9 0.461135 GCATTACCTTCCCCGTCGTA 59.539 55.000 0.00 0.00 0.00 3.43
9 10 1.219935 GCATTACCTTCCCCGTCGT 59.780 57.895 0.00 0.00 0.00 4.34
10 11 0.107848 AAGCATTACCTTCCCCGTCG 60.108 55.000 0.00 0.00 0.00 5.12
11 12 1.065709 TCAAGCATTACCTTCCCCGTC 60.066 52.381 0.00 0.00 0.00 4.79
12 13 0.988832 TCAAGCATTACCTTCCCCGT 59.011 50.000 0.00 0.00 0.00 5.28
13 14 1.668419 CTCAAGCATTACCTTCCCCG 58.332 55.000 0.00 0.00 0.00 5.73
14 15 1.393603 GCTCAAGCATTACCTTCCCC 58.606 55.000 0.00 0.00 41.59 4.81
15 16 1.017387 CGCTCAAGCATTACCTTCCC 58.983 55.000 2.50 0.00 42.21 3.97
16 17 1.936547 CTCGCTCAAGCATTACCTTCC 59.063 52.381 2.50 0.00 42.21 3.46
17 18 2.605366 GTCTCGCTCAAGCATTACCTTC 59.395 50.000 2.50 0.00 42.21 3.46
18 19 2.028112 TGTCTCGCTCAAGCATTACCTT 60.028 45.455 2.50 0.00 42.21 3.50
19 20 1.550524 TGTCTCGCTCAAGCATTACCT 59.449 47.619 2.50 0.00 42.21 3.08
20 21 1.929836 CTGTCTCGCTCAAGCATTACC 59.070 52.381 2.50 0.00 42.21 2.85
21 22 2.881074 TCTGTCTCGCTCAAGCATTAC 58.119 47.619 2.50 0.00 42.21 1.89
22 23 3.515630 CTTCTGTCTCGCTCAAGCATTA 58.484 45.455 2.50 0.00 42.21 1.90
23 24 2.344950 CTTCTGTCTCGCTCAAGCATT 58.655 47.619 2.50 0.00 42.21 3.56
24 25 2.006056 GCTTCTGTCTCGCTCAAGCAT 61.006 52.381 2.50 0.00 42.21 3.79
25 26 0.668706 GCTTCTGTCTCGCTCAAGCA 60.669 55.000 2.50 0.00 42.21 3.91
26 27 0.389687 AGCTTCTGTCTCGCTCAAGC 60.390 55.000 0.00 0.00 39.87 4.01
27 28 2.929531 TAGCTTCTGTCTCGCTCAAG 57.070 50.000 0.00 0.00 35.33 3.02
28 29 3.694566 TGTATAGCTTCTGTCTCGCTCAA 59.305 43.478 0.00 0.00 35.33 3.02
29 30 3.065510 GTGTATAGCTTCTGTCTCGCTCA 59.934 47.826 0.00 0.00 35.33 4.26
30 31 3.065510 TGTGTATAGCTTCTGTCTCGCTC 59.934 47.826 0.00 0.00 35.33 5.03
31 32 3.017442 TGTGTATAGCTTCTGTCTCGCT 58.983 45.455 0.00 0.00 37.77 4.93
32 33 3.109619 GTGTGTATAGCTTCTGTCTCGC 58.890 50.000 0.00 0.00 0.00 5.03
33 34 4.624336 AGTGTGTATAGCTTCTGTCTCG 57.376 45.455 0.00 0.00 0.00 4.04
34 35 7.806014 GCTTATAGTGTGTATAGCTTCTGTCTC 59.194 40.741 0.00 0.00 0.00 3.36
35 36 7.520776 CGCTTATAGTGTGTATAGCTTCTGTCT 60.521 40.741 0.00 0.00 0.00 3.41
36 37 6.579292 CGCTTATAGTGTGTATAGCTTCTGTC 59.421 42.308 0.00 0.00 0.00 3.51
37 38 6.262496 TCGCTTATAGTGTGTATAGCTTCTGT 59.738 38.462 0.00 0.00 0.00 3.41
38 39 6.669278 TCGCTTATAGTGTGTATAGCTTCTG 58.331 40.000 0.00 0.00 0.00 3.02
39 40 6.711194 TCTCGCTTATAGTGTGTATAGCTTCT 59.289 38.462 0.00 0.00 0.00 2.85
40 41 6.900189 TCTCGCTTATAGTGTGTATAGCTTC 58.100 40.000 0.00 0.00 0.00 3.86
41 42 6.879276 TCTCGCTTATAGTGTGTATAGCTT 57.121 37.500 0.00 0.00 0.00 3.74
42 43 8.740123 ATATCTCGCTTATAGTGTGTATAGCT 57.260 34.615 0.00 0.00 0.00 3.32
46 47 9.893634 AGACTATATCTCGCTTATAGTGTGTAT 57.106 33.333 13.18 0.00 40.99 2.29
47 48 9.722184 AAGACTATATCTCGCTTATAGTGTGTA 57.278 33.333 13.18 0.00 40.99 2.90
48 49 8.624367 AAGACTATATCTCGCTTATAGTGTGT 57.376 34.615 13.18 0.00 40.99 3.72
49 50 7.900864 CGAAGACTATATCTCGCTTATAGTGTG 59.099 40.741 13.18 0.00 40.99 3.82
50 51 7.413219 GCGAAGACTATATCTCGCTTATAGTGT 60.413 40.741 10.47 8.72 44.08 3.55
51 52 6.902948 GCGAAGACTATATCTCGCTTATAGTG 59.097 42.308 10.47 0.00 44.08 2.74
52 53 6.594547 TGCGAAGACTATATCTCGCTTATAGT 59.405 38.462 16.84 9.91 45.89 2.12
53 54 6.902948 GTGCGAAGACTATATCTCGCTTATAG 59.097 42.308 16.84 4.51 45.89 1.31
54 55 6.455246 CGTGCGAAGACTATATCTCGCTTATA 60.455 42.308 16.84 0.00 45.89 0.98
55 56 5.632959 GTGCGAAGACTATATCTCGCTTAT 58.367 41.667 16.84 0.00 45.89 1.73
56 57 4.377124 CGTGCGAAGACTATATCTCGCTTA 60.377 45.833 16.84 0.00 45.89 3.09
57 58 3.607310 CGTGCGAAGACTATATCTCGCTT 60.607 47.826 16.84 0.00 45.89 4.68
58 59 2.096169 CGTGCGAAGACTATATCTCGCT 60.096 50.000 16.84 0.00 45.89 4.93
59 60 2.235020 CGTGCGAAGACTATATCTCGC 58.765 52.381 10.76 10.76 45.89 5.03
60 61 2.235020 GCGTGCGAAGACTATATCTCG 58.765 52.381 0.00 0.00 36.27 4.04
61 62 2.235020 CGCGTGCGAAGACTATATCTC 58.765 52.381 8.89 0.00 42.83 2.75
62 63 1.602851 ACGCGTGCGAAGACTATATCT 59.397 47.619 22.32 0.00 42.83 1.98
63 64 2.033793 ACGCGTGCGAAGACTATATC 57.966 50.000 22.32 0.00 42.83 1.63
64 65 3.724128 CGATACGCGTGCGAAGACTATAT 60.724 47.826 24.59 1.50 42.83 0.86
65 66 2.410646 CGATACGCGTGCGAAGACTATA 60.411 50.000 24.59 0.00 42.83 1.31
66 67 1.659491 CGATACGCGTGCGAAGACTAT 60.659 52.381 24.59 3.01 42.83 2.12
67 68 0.315625 CGATACGCGTGCGAAGACTA 60.316 55.000 24.59 0.00 42.83 2.59
68 69 1.582937 CGATACGCGTGCGAAGACT 60.583 57.895 24.59 0.00 42.83 3.24
69 70 2.904016 CGATACGCGTGCGAAGAC 59.096 61.111 24.59 8.10 42.83 3.01
70 71 2.947621 GCGATACGCGTGCGAAGA 60.948 61.111 31.06 9.91 44.55 2.87
80 81 2.089121 GTGTATCATTGCGAGCGATACG 59.911 50.000 16.16 0.00 42.83 3.06
81 82 3.049912 TGTGTATCATTGCGAGCGATAC 58.950 45.455 15.08 15.08 41.14 2.24
82 83 3.363341 TGTGTATCATTGCGAGCGATA 57.637 42.857 0.00 0.00 0.00 2.92
83 84 2.223537 TGTGTATCATTGCGAGCGAT 57.776 45.000 0.00 0.00 0.00 4.58
84 85 2.127251 GATGTGTATCATTGCGAGCGA 58.873 47.619 0.00 0.00 36.83 4.93
85 86 1.860326 TGATGTGTATCATTGCGAGCG 59.140 47.619 0.00 0.00 38.37 5.03
86 87 2.349249 GCTGATGTGTATCATTGCGAGC 60.349 50.000 0.00 0.00 42.19 5.03
87 88 3.516681 GCTGATGTGTATCATTGCGAG 57.483 47.619 0.00 0.00 42.19 5.03
89 90 2.289890 CGCTGATGTGTATCATTGCG 57.710 50.000 8.72 8.72 45.07 4.85
90 91 1.334419 GGCGCTGATGTGTATCATTGC 60.334 52.381 7.64 0.00 42.19 3.56
91 92 1.265095 GGGCGCTGATGTGTATCATTG 59.735 52.381 7.64 0.00 42.19 2.82
92 93 1.597742 GGGCGCTGATGTGTATCATT 58.402 50.000 7.64 0.00 42.19 2.57
93 94 0.601046 CGGGCGCTGATGTGTATCAT 60.601 55.000 7.64 0.00 42.19 2.45
94 95 1.227234 CGGGCGCTGATGTGTATCA 60.227 57.895 7.64 0.00 40.92 2.15
95 96 1.956170 CCGGGCGCTGATGTGTATC 60.956 63.158 7.64 0.00 0.00 2.24
96 97 2.108976 CCGGGCGCTGATGTGTAT 59.891 61.111 7.64 0.00 0.00 2.29
97 98 2.457743 AAACCGGGCGCTGATGTGTA 62.458 55.000 7.64 0.00 0.00 2.90
98 99 2.457743 TAAACCGGGCGCTGATGTGT 62.458 55.000 7.64 0.00 0.00 3.72
99 100 1.095228 ATAAACCGGGCGCTGATGTG 61.095 55.000 7.64 0.00 0.00 3.21
100 101 0.466543 TATAAACCGGGCGCTGATGT 59.533 50.000 7.64 0.00 0.00 3.06
101 102 1.148310 CTATAAACCGGGCGCTGATG 58.852 55.000 7.64 0.00 0.00 3.07
102 103 0.034896 CCTATAAACCGGGCGCTGAT 59.965 55.000 7.64 0.00 0.00 2.90
103 104 1.444250 CCTATAAACCGGGCGCTGA 59.556 57.895 7.64 0.00 0.00 4.26
104 105 1.597027 CCCTATAAACCGGGCGCTG 60.597 63.158 7.64 0.00 32.83 5.18
105 106 0.760189 TACCCTATAAACCGGGCGCT 60.760 55.000 7.64 0.00 44.63 5.92
106 107 0.320160 CTACCCTATAAACCGGGCGC 60.320 60.000 6.32 0.00 44.63 6.53
107 108 0.320160 GCTACCCTATAAACCGGGCG 60.320 60.000 6.32 0.00 44.63 6.13
108 109 0.035881 GGCTACCCTATAAACCGGGC 59.964 60.000 6.32 0.00 44.63 6.13
109 110 1.725803 AGGCTACCCTATAAACCGGG 58.274 55.000 6.32 0.00 46.26 5.73
110 111 4.590222 TCTTTAGGCTACCCTATAAACCGG 59.410 45.833 0.00 0.00 43.15 5.28
111 112 5.796424 TCTTTAGGCTACCCTATAAACCG 57.204 43.478 0.00 0.00 43.15 4.44
112 113 7.799081 TCTTTCTTTAGGCTACCCTATAAACC 58.201 38.462 0.00 0.00 43.15 3.27
113 114 9.676861 TTTCTTTCTTTAGGCTACCCTATAAAC 57.323 33.333 0.00 0.00 43.15 2.01
114 115 9.676861 GTTTCTTTCTTTAGGCTACCCTATAAA 57.323 33.333 0.00 0.00 43.15 1.40
115 116 8.270030 GGTTTCTTTCTTTAGGCTACCCTATAA 58.730 37.037 0.00 0.00 43.15 0.98
116 117 7.626487 AGGTTTCTTTCTTTAGGCTACCCTATA 59.374 37.037 0.00 0.00 43.15 1.31
117 118 6.447409 AGGTTTCTTTCTTTAGGCTACCCTAT 59.553 38.462 0.00 0.00 43.15 2.57
118 119 5.789054 AGGTTTCTTTCTTTAGGCTACCCTA 59.211 40.000 0.00 0.00 42.87 3.53
119 120 4.602294 AGGTTTCTTTCTTTAGGCTACCCT 59.398 41.667 0.00 0.00 45.61 4.34
120 121 4.919793 AGGTTTCTTTCTTTAGGCTACCC 58.080 43.478 0.00 0.00 0.00 3.69
121 122 6.598457 CCTTAGGTTTCTTTCTTTAGGCTACC 59.402 42.308 0.00 0.00 0.00 3.18
122 123 7.166851 ACCTTAGGTTTCTTTCTTTAGGCTAC 58.833 38.462 0.00 0.00 27.29 3.58
123 124 7.325725 ACCTTAGGTTTCTTTCTTTAGGCTA 57.674 36.000 0.00 0.00 27.29 3.93
124 125 6.202202 ACCTTAGGTTTCTTTCTTTAGGCT 57.798 37.500 0.00 0.00 27.29 4.58
125 126 6.896021 AACCTTAGGTTTCTTTCTTTAGGC 57.104 37.500 11.39 0.00 44.33 3.93
179 180 1.576421 GACCAAGCCAAGAAGCGTG 59.424 57.895 0.00 0.00 41.25 5.34
182 183 1.246737 CCTGGACCAAGCCAAGAAGC 61.247 60.000 0.00 0.00 37.52 3.86
183 184 0.610232 CCCTGGACCAAGCCAAGAAG 60.610 60.000 0.00 0.00 37.52 2.85
188 189 3.970410 CAGCCCTGGACCAAGCCA 61.970 66.667 11.63 0.00 36.30 4.75
230 249 3.132824 CCTCTTTTGTTTTGGAGCACCTT 59.867 43.478 0.71 0.00 37.04 3.50
232 251 2.693074 TCCTCTTTTGTTTTGGAGCACC 59.307 45.455 0.00 0.00 0.00 5.01
239 258 2.388121 CGCAGCTCCTCTTTTGTTTTG 58.612 47.619 0.00 0.00 0.00 2.44
244 263 2.694760 GGCCGCAGCTCCTCTTTTG 61.695 63.158 0.00 0.00 39.73 2.44
249 268 3.435186 GTTTGGCCGCAGCTCCTC 61.435 66.667 0.00 0.00 39.73 3.71
250 269 3.497884 AAGTTTGGCCGCAGCTCCT 62.498 57.895 0.00 0.00 39.73 3.69
252 271 2.256461 CAAGTTTGGCCGCAGCTC 59.744 61.111 0.00 0.00 39.73 4.09
253 272 3.297620 CCAAGTTTGGCCGCAGCT 61.298 61.111 0.00 0.00 42.21 4.24
263 282 1.075600 CACCCCACCCACCAAGTTT 60.076 57.895 0.00 0.00 0.00 2.66
265 284 3.507713 CCACCCCACCCACCAAGT 61.508 66.667 0.00 0.00 0.00 3.16
298 330 1.849219 CGCGACTAGAGAAATCACAGC 59.151 52.381 0.00 0.00 0.00 4.40
305 337 1.738350 CTCCTCACGCGACTAGAGAAA 59.262 52.381 15.93 5.50 0.00 2.52
324 356 4.664064 ACATCCATCCATCCAAGATTCTCT 59.336 41.667 0.00 0.00 0.00 3.10
328 360 5.133383 TCAACATCCATCCATCCAAGATT 57.867 39.130 0.00 0.00 0.00 2.40
330 362 4.466827 CATCAACATCCATCCATCCAAGA 58.533 43.478 0.00 0.00 0.00 3.02
416 470 4.270325 GCACGGGTATCTTGCTAGTTTTAG 59.730 45.833 0.00 0.00 33.26 1.85
417 471 4.186159 GCACGGGTATCTTGCTAGTTTTA 58.814 43.478 0.00 0.00 33.26 1.52
418 472 3.007635 GCACGGGTATCTTGCTAGTTTT 58.992 45.455 0.00 0.00 33.26 2.43
421 475 0.102481 CGCACGGGTATCTTGCTAGT 59.898 55.000 0.00 0.00 33.90 2.57
422 476 0.102481 ACGCACGGGTATCTTGCTAG 59.898 55.000 0.00 0.00 33.90 3.42
423 477 0.533491 AACGCACGGGTATCTTGCTA 59.467 50.000 0.00 0.00 33.90 3.49
424 478 1.019278 CAACGCACGGGTATCTTGCT 61.019 55.000 0.00 0.00 33.90 3.91
425 479 1.423845 CAACGCACGGGTATCTTGC 59.576 57.895 0.00 0.00 0.00 4.01
426 480 1.295357 TGCAACGCACGGGTATCTTG 61.295 55.000 0.00 0.00 31.71 3.02
427 481 1.004320 TGCAACGCACGGGTATCTT 60.004 52.632 0.00 0.00 31.71 2.40
428 482 2.660206 TGCAACGCACGGGTATCT 59.340 55.556 0.00 0.00 31.71 1.98
440 494 4.659874 CCGTGCGTTCCGTGCAAC 62.660 66.667 0.00 0.00 45.23 4.17
441 495 4.893601 TCCGTGCGTTCCGTGCAA 62.894 61.111 0.00 0.00 45.23 4.08
442 496 4.893601 TTCCGTGCGTTCCGTGCA 62.894 61.111 0.00 0.00 40.70 4.57
443 497 4.364409 GTTCCGTGCGTTCCGTGC 62.364 66.667 0.00 0.00 0.00 5.34
444 498 2.222953 GATGTTCCGTGCGTTCCGTG 62.223 60.000 0.00 0.00 0.00 4.94
445 499 2.025418 GATGTTCCGTGCGTTCCGT 61.025 57.895 0.00 0.00 0.00 4.69
446 500 1.561717 TTGATGTTCCGTGCGTTCCG 61.562 55.000 0.00 0.00 0.00 4.30
447 501 0.165944 CTTGATGTTCCGTGCGTTCC 59.834 55.000 0.00 0.00 0.00 3.62
448 502 1.144969 TCTTGATGTTCCGTGCGTTC 58.855 50.000 0.00 0.00 0.00 3.95
449 503 1.464608 CATCTTGATGTTCCGTGCGTT 59.535 47.619 2.66 0.00 0.00 4.84
450 504 1.078709 CATCTTGATGTTCCGTGCGT 58.921 50.000 2.66 0.00 0.00 5.24
451 505 0.247814 GCATCTTGATGTTCCGTGCG 60.248 55.000 11.61 0.00 0.00 5.34
452 506 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
453 507 3.770263 AATGCATCTTGATGTTCCGTG 57.230 42.857 0.00 0.00 0.00 4.94
454 508 7.445096 TCATATAAATGCATCTTGATGTTCCGT 59.555 33.333 0.00 0.00 32.76 4.69
455 509 7.809665 TCATATAAATGCATCTTGATGTTCCG 58.190 34.615 0.00 0.00 32.76 4.30
456 510 9.006839 TCTCATATAAATGCATCTTGATGTTCC 57.993 33.333 0.00 0.00 32.76 3.62
458 512 9.011095 CCTCTCATATAAATGCATCTTGATGTT 57.989 33.333 0.00 0.00 32.76 2.71
459 513 8.162085 ACCTCTCATATAAATGCATCTTGATGT 58.838 33.333 0.00 0.00 32.76 3.06
460 514 8.563123 ACCTCTCATATAAATGCATCTTGATG 57.437 34.615 0.00 6.27 32.76 3.07
461 515 9.584008 AAACCTCTCATATAAATGCATCTTGAT 57.416 29.630 0.00 0.00 32.76 2.57
462 516 8.985315 AAACCTCTCATATAAATGCATCTTGA 57.015 30.769 0.00 0.00 32.76 3.02
475 529 9.927081 ATCTTCCACAAAATAAACCTCTCATAT 57.073 29.630 0.00 0.00 0.00 1.78
477 531 9.753674 TTATCTTCCACAAAATAAACCTCTCAT 57.246 29.630 0.00 0.00 0.00 2.90
478 532 9.231297 CTTATCTTCCACAAAATAAACCTCTCA 57.769 33.333 0.00 0.00 0.00 3.27
479 533 8.678199 CCTTATCTTCCACAAAATAAACCTCTC 58.322 37.037 0.00 0.00 0.00 3.20
480 534 8.390921 TCCTTATCTTCCACAAAATAAACCTCT 58.609 33.333 0.00 0.00 0.00 3.69
481 535 8.575649 TCCTTATCTTCCACAAAATAAACCTC 57.424 34.615 0.00 0.00 0.00 3.85
482 536 8.971073 CATCCTTATCTTCCACAAAATAAACCT 58.029 33.333 0.00 0.00 0.00 3.50
483 537 8.966868 TCATCCTTATCTTCCACAAAATAAACC 58.033 33.333 0.00 0.00 0.00 3.27
486 540 9.973661 TCTTCATCCTTATCTTCCACAAAATAA 57.026 29.630 0.00 0.00 0.00 1.40
487 541 9.973661 TTCTTCATCCTTATCTTCCACAAAATA 57.026 29.630 0.00 0.00 0.00 1.40
488 542 8.884124 TTCTTCATCCTTATCTTCCACAAAAT 57.116 30.769 0.00 0.00 0.00 1.82
489 543 7.394359 CCTTCTTCATCCTTATCTTCCACAAAA 59.606 37.037 0.00 0.00 0.00 2.44
490 544 6.886459 CCTTCTTCATCCTTATCTTCCACAAA 59.114 38.462 0.00 0.00 0.00 2.83
491 545 6.215431 TCCTTCTTCATCCTTATCTTCCACAA 59.785 38.462 0.00 0.00 0.00 3.33
492 546 5.726308 TCCTTCTTCATCCTTATCTTCCACA 59.274 40.000 0.00 0.00 0.00 4.17
493 547 6.240549 TCCTTCTTCATCCTTATCTTCCAC 57.759 41.667 0.00 0.00 0.00 4.02
494 548 6.891306 TTCCTTCTTCATCCTTATCTTCCA 57.109 37.500 0.00 0.00 0.00 3.53
495 549 7.497579 GTCTTTCCTTCTTCATCCTTATCTTCC 59.502 40.741 0.00 0.00 0.00 3.46
496 550 8.264347 AGTCTTTCCTTCTTCATCCTTATCTTC 58.736 37.037 0.00 0.00 0.00 2.87
497 551 8.156822 AGTCTTTCCTTCTTCATCCTTATCTT 57.843 34.615 0.00 0.00 0.00 2.40
498 552 7.747809 AGTCTTTCCTTCTTCATCCTTATCT 57.252 36.000 0.00 0.00 0.00 1.98
499 553 8.800370 AAAGTCTTTCCTTCTTCATCCTTATC 57.200 34.615 0.00 0.00 0.00 1.75
501 555 9.892130 GATAAAGTCTTTCCTTCTTCATCCTTA 57.108 33.333 0.00 0.00 0.00 2.69
502 556 8.610369 AGATAAAGTCTTTCCTTCTTCATCCTT 58.390 33.333 0.00 0.00 31.47 3.36
503 557 8.046107 CAGATAAAGTCTTTCCTTCTTCATCCT 58.954 37.037 0.00 0.00 34.00 3.24
504 558 7.201688 GCAGATAAAGTCTTTCCTTCTTCATCC 60.202 40.741 0.00 0.00 34.00 3.51
505 559 7.335422 TGCAGATAAAGTCTTTCCTTCTTCATC 59.665 37.037 0.00 0.00 34.00 2.92
506 560 7.170965 TGCAGATAAAGTCTTTCCTTCTTCAT 58.829 34.615 0.00 0.00 34.00 2.57
507 561 6.533730 TGCAGATAAAGTCTTTCCTTCTTCA 58.466 36.000 0.00 1.87 34.00 3.02
508 562 7.440523 TTGCAGATAAAGTCTTTCCTTCTTC 57.559 36.000 0.00 0.00 34.00 2.87
509 563 7.823745 TTTGCAGATAAAGTCTTTCCTTCTT 57.176 32.000 0.00 0.00 34.00 2.52
510 564 7.449704 ACATTTGCAGATAAAGTCTTTCCTTCT 59.550 33.333 0.00 0.83 34.00 2.85
511 565 7.540055 CACATTTGCAGATAAAGTCTTTCCTTC 59.460 37.037 0.00 0.00 34.00 3.46
512 566 7.231317 TCACATTTGCAGATAAAGTCTTTCCTT 59.769 33.333 0.00 0.00 34.00 3.36
513 567 6.716628 TCACATTTGCAGATAAAGTCTTTCCT 59.283 34.615 0.00 0.00 34.00 3.36
514 568 6.913170 TCACATTTGCAGATAAAGTCTTTCC 58.087 36.000 0.00 0.00 34.00 3.13
515 569 8.292448 TCTTCACATTTGCAGATAAAGTCTTTC 58.708 33.333 0.00 0.00 34.00 2.62
516 570 8.169977 TCTTCACATTTGCAGATAAAGTCTTT 57.830 30.769 2.81 2.81 34.00 2.52
517 571 7.446625 ACTCTTCACATTTGCAGATAAAGTCTT 59.553 33.333 0.00 0.00 34.00 3.01
518 572 6.939163 ACTCTTCACATTTGCAGATAAAGTCT 59.061 34.615 0.00 0.00 37.80 3.24
519 573 7.020010 CACTCTTCACATTTGCAGATAAAGTC 58.980 38.462 0.00 0.00 0.00 3.01
520 574 6.488006 ACACTCTTCACATTTGCAGATAAAGT 59.512 34.615 0.00 0.00 0.00 2.66
521 575 6.906659 ACACTCTTCACATTTGCAGATAAAG 58.093 36.000 0.00 0.00 0.00 1.85
522 576 6.882610 ACACTCTTCACATTTGCAGATAAA 57.117 33.333 0.00 0.00 0.00 1.40
523 577 6.262944 ACAACACTCTTCACATTTGCAGATAA 59.737 34.615 0.00 0.00 0.00 1.75
524 578 5.764686 ACAACACTCTTCACATTTGCAGATA 59.235 36.000 0.00 0.00 0.00 1.98
525 579 4.581824 ACAACACTCTTCACATTTGCAGAT 59.418 37.500 0.00 0.00 0.00 2.90
526 580 3.947196 ACAACACTCTTCACATTTGCAGA 59.053 39.130 0.00 0.00 0.00 4.26
527 581 4.039703 CACAACACTCTTCACATTTGCAG 58.960 43.478 0.00 0.00 0.00 4.41
528 582 3.181488 CCACAACACTCTTCACATTTGCA 60.181 43.478 0.00 0.00 0.00 4.08
529 583 3.374745 CCACAACACTCTTCACATTTGC 58.625 45.455 0.00 0.00 0.00 3.68
530 584 3.381272 ACCCACAACACTCTTCACATTTG 59.619 43.478 0.00 0.00 0.00 2.32
531 585 3.631250 ACCCACAACACTCTTCACATTT 58.369 40.909 0.00 0.00 0.00 2.32
532 586 3.297134 ACCCACAACACTCTTCACATT 57.703 42.857 0.00 0.00 0.00 2.71
533 587 4.640771 ATACCCACAACACTCTTCACAT 57.359 40.909 0.00 0.00 0.00 3.21
534 588 5.755409 ATATACCCACAACACTCTTCACA 57.245 39.130 0.00 0.00 0.00 3.58
535 589 7.448748 AAAATATACCCACAACACTCTTCAC 57.551 36.000 0.00 0.00 0.00 3.18
536 590 7.523052 GCAAAAATATACCCACAACACTCTTCA 60.523 37.037 0.00 0.00 0.00 3.02
537 591 6.806739 GCAAAAATATACCCACAACACTCTTC 59.193 38.462 0.00 0.00 0.00 2.87
538 592 6.266558 TGCAAAAATATACCCACAACACTCTT 59.733 34.615 0.00 0.00 0.00 2.85
539 593 5.772672 TGCAAAAATATACCCACAACACTCT 59.227 36.000 0.00 0.00 0.00 3.24
540 594 6.019779 TGCAAAAATATACCCACAACACTC 57.980 37.500 0.00 0.00 0.00 3.51
541 595 6.412362 TTGCAAAAATATACCCACAACACT 57.588 33.333 0.00 0.00 0.00 3.55
542 596 7.484035 TTTTGCAAAAATATACCCACAACAC 57.516 32.000 21.94 0.00 0.00 3.32
543 597 8.682936 AATTTTGCAAAAATATACCCACAACA 57.317 26.923 27.10 0.02 0.00 3.33
578 632 9.841880 CGATCTATATCTGACGGATAAAAAGAA 57.158 33.333 8.06 0.00 39.94 2.52
579 633 8.459635 CCGATCTATATCTGACGGATAAAAAGA 58.540 37.037 8.06 11.06 42.40 2.52
580 634 8.459635 TCCGATCTATATCTGACGGATAAAAAG 58.540 37.037 8.06 6.68 43.30 2.27
581 635 8.344446 TCCGATCTATATCTGACGGATAAAAA 57.656 34.615 8.06 0.00 43.30 1.94
582 636 7.933215 TCCGATCTATATCTGACGGATAAAA 57.067 36.000 8.06 0.00 43.30 1.52
590 644 2.097791 GGCCGTCCGATCTATATCTGAC 59.902 54.545 0.00 3.47 40.83 3.51
591 645 2.026169 AGGCCGTCCGATCTATATCTGA 60.026 50.000 0.00 0.00 37.47 3.27
592 646 2.370349 AGGCCGTCCGATCTATATCTG 58.630 52.381 0.00 0.00 37.47 2.90
593 647 2.810870 AGGCCGTCCGATCTATATCT 57.189 50.000 0.00 0.00 37.47 1.98
594 648 6.613233 CAATATAGGCCGTCCGATCTATATC 58.387 44.000 15.29 0.00 35.53 1.63
595 649 5.047943 GCAATATAGGCCGTCCGATCTATAT 60.048 44.000 0.00 11.98 37.13 0.86
596 650 4.277672 GCAATATAGGCCGTCCGATCTATA 59.722 45.833 0.00 9.58 37.47 1.31
597 651 3.068307 GCAATATAGGCCGTCCGATCTAT 59.932 47.826 0.00 0.00 37.47 1.98
598 652 2.426024 GCAATATAGGCCGTCCGATCTA 59.574 50.000 0.00 0.00 37.47 1.98
599 653 1.204941 GCAATATAGGCCGTCCGATCT 59.795 52.381 0.00 0.00 37.47 2.75
600 654 1.067142 TGCAATATAGGCCGTCCGATC 60.067 52.381 0.00 0.00 37.47 3.69
601 655 0.973632 TGCAATATAGGCCGTCCGAT 59.026 50.000 0.00 0.00 37.47 4.18
602 656 0.317160 CTGCAATATAGGCCGTCCGA 59.683 55.000 0.00 0.00 37.47 4.55
603 657 0.317160 TCTGCAATATAGGCCGTCCG 59.683 55.000 0.00 0.00 37.47 4.79
604 658 2.543777 TTCTGCAATATAGGCCGTCC 57.456 50.000 0.00 0.00 0.00 4.79
605 659 3.433615 GTCATTCTGCAATATAGGCCGTC 59.566 47.826 0.00 0.00 0.00 4.79
606 660 3.181455 TGTCATTCTGCAATATAGGCCGT 60.181 43.478 0.00 0.00 0.00 5.68
607 661 3.402110 TGTCATTCTGCAATATAGGCCG 58.598 45.455 0.00 0.00 0.00 6.13
608 662 3.755378 CCTGTCATTCTGCAATATAGGCC 59.245 47.826 0.00 0.00 0.00 5.19
609 663 4.392940 ACCTGTCATTCTGCAATATAGGC 58.607 43.478 0.00 0.00 0.00 3.93
610 664 6.524734 TGTACCTGTCATTCTGCAATATAGG 58.475 40.000 0.00 0.00 0.00 2.57
611 665 7.874528 TGATGTACCTGTCATTCTGCAATATAG 59.125 37.037 0.00 0.00 0.00 1.31
612 666 7.734942 TGATGTACCTGTCATTCTGCAATATA 58.265 34.615 0.00 0.00 0.00 0.86
613 667 6.594744 TGATGTACCTGTCATTCTGCAATAT 58.405 36.000 0.00 0.00 0.00 1.28
614 668 5.988287 TGATGTACCTGTCATTCTGCAATA 58.012 37.500 0.00 0.00 0.00 1.90
615 669 4.847198 TGATGTACCTGTCATTCTGCAAT 58.153 39.130 0.00 0.00 0.00 3.56
616 670 4.284829 TGATGTACCTGTCATTCTGCAA 57.715 40.909 0.00 0.00 0.00 4.08
617 671 3.979101 TGATGTACCTGTCATTCTGCA 57.021 42.857 0.00 0.00 0.00 4.41
618 672 4.445453 TGATGATGTACCTGTCATTCTGC 58.555 43.478 6.87 0.00 35.33 4.26
619 673 6.285990 TGATGATGATGTACCTGTCATTCTG 58.714 40.000 6.87 0.00 35.33 3.02
620 674 6.490241 TGATGATGATGTACCTGTCATTCT 57.510 37.500 6.87 0.13 35.33 2.40
621 675 6.932960 TGATGATGATGATGTACCTGTCATTC 59.067 38.462 6.87 3.68 35.33 2.67
622 676 6.834107 TGATGATGATGATGTACCTGTCATT 58.166 36.000 6.87 0.00 35.33 2.57
623 677 6.429521 TGATGATGATGATGTACCTGTCAT 57.570 37.500 5.49 5.49 37.76 3.06
624 678 5.874897 TGATGATGATGATGTACCTGTCA 57.125 39.130 0.00 0.00 0.00 3.58
625 679 6.286758 AGTTGATGATGATGATGTACCTGTC 58.713 40.000 0.00 0.00 0.00 3.51
626 680 6.099413 AGAGTTGATGATGATGATGTACCTGT 59.901 38.462 0.00 0.00 0.00 4.00
627 681 6.424207 CAGAGTTGATGATGATGATGTACCTG 59.576 42.308 0.00 0.00 0.00 4.00
628 682 6.099413 ACAGAGTTGATGATGATGATGTACCT 59.901 38.462 0.00 0.00 0.00 3.08
629 683 6.286758 ACAGAGTTGATGATGATGATGTACC 58.713 40.000 0.00 0.00 0.00 3.34
630 684 7.208777 AGACAGAGTTGATGATGATGATGTAC 58.791 38.462 0.00 0.00 0.00 2.90
631 685 7.357429 AGACAGAGTTGATGATGATGATGTA 57.643 36.000 0.00 0.00 0.00 2.29
632 686 6.236558 AGACAGAGTTGATGATGATGATGT 57.763 37.500 0.00 0.00 0.00 3.06
633 687 7.555306 AAAGACAGAGTTGATGATGATGATG 57.445 36.000 0.00 0.00 0.00 3.07
634 688 9.848710 ATAAAAGACAGAGTTGATGATGATGAT 57.151 29.630 0.00 0.00 0.00 2.45
640 694 9.323985 GCTCTTATAAAAGACAGAGTTGATGAT 57.676 33.333 0.00 0.00 36.80 2.45
641 695 8.314021 TGCTCTTATAAAAGACAGAGTTGATGA 58.686 33.333 0.00 0.00 36.80 2.92
642 696 8.484641 TGCTCTTATAAAAGACAGAGTTGATG 57.515 34.615 0.00 0.00 36.80 3.07
643 697 8.535335 TCTGCTCTTATAAAAGACAGAGTTGAT 58.465 33.333 8.13 0.00 40.71 2.57
644 698 7.896811 TCTGCTCTTATAAAAGACAGAGTTGA 58.103 34.615 8.13 1.74 40.71 3.18
645 699 8.539770 TTCTGCTCTTATAAAAGACAGAGTTG 57.460 34.615 10.68 1.61 43.17 3.16
693 747 0.600255 AACTGCTCCACCGAAGTTCG 60.600 55.000 18.40 18.40 40.07 3.95
701 755 0.531974 TGAACGTGAACTGCTCCACC 60.532 55.000 0.00 0.00 0.00 4.61
708 762 2.032054 ACATTGCACTGAACGTGAACTG 59.968 45.455 11.48 0.00 46.81 3.16
767 2338 5.603596 TCCTTTTCTAGTGTTCTTTACGCA 58.396 37.500 0.00 0.00 39.79 5.24
768 2339 5.924825 TCTCCTTTTCTAGTGTTCTTTACGC 59.075 40.000 0.00 0.00 37.53 4.42
769 2340 7.146648 ACTCTCCTTTTCTAGTGTTCTTTACG 58.853 38.462 0.00 0.00 0.00 3.18
770 2341 9.628746 CTACTCTCCTTTTCTAGTGTTCTTTAC 57.371 37.037 0.00 0.00 0.00 2.01
773 2344 8.480133 TTCTACTCTCCTTTTCTAGTGTTCTT 57.520 34.615 0.00 0.00 0.00 2.52
774 2345 8.658840 ATTCTACTCTCCTTTTCTAGTGTTCT 57.341 34.615 0.00 0.00 0.00 3.01
777 2348 9.310449 TGTTATTCTACTCTCCTTTTCTAGTGT 57.690 33.333 0.00 0.00 0.00 3.55
779 2350 9.756571 TCTGTTATTCTACTCTCCTTTTCTAGT 57.243 33.333 0.00 0.00 0.00 2.57
785 2356 9.674068 GGAAATTCTGTTATTCTACTCTCCTTT 57.326 33.333 0.00 0.00 0.00 3.11
910 2483 5.192927 AGAGACAATGTTGAGTGGTTGAAA 58.807 37.500 0.00 0.00 0.00 2.69
925 2498 7.230712 TGGTACGTGATGATGTATAGAGACAAT 59.769 37.037 0.00 0.00 31.83 2.71
929 2502 6.296803 AGTGGTACGTGATGATGTATAGAGA 58.703 40.000 0.00 0.00 0.00 3.10
1024 2604 2.948979 CCCAGAAGCTTGTTGTGTACAA 59.051 45.455 2.10 0.00 44.31 2.41
1025 2605 2.571212 CCCAGAAGCTTGTTGTGTACA 58.429 47.619 2.10 0.00 34.12 2.90
1026 2606 1.880027 CCCCAGAAGCTTGTTGTGTAC 59.120 52.381 2.10 0.00 0.00 2.90
1063 2643 1.494721 CCCATGGCTACTGGTATGGTT 59.505 52.381 6.09 0.00 38.69 3.67
1067 2647 2.330216 GAGTCCCATGGCTACTGGTAT 58.670 52.381 19.51 0.00 31.44 2.73
1068 2648 1.691482 GGAGTCCCATGGCTACTGGTA 60.691 57.143 19.51 0.00 31.44 3.25
1405 2985 2.202878 AGCACGCACGTGTTGACT 60.203 55.556 22.66 12.45 46.90 3.41
1419 2999 0.103390 TTTCCACGAGAACACGAGCA 59.897 50.000 0.00 0.00 32.95 4.26
1925 3523 0.033796 ATGGCAATGGCAGCACTACT 60.034 50.000 16.10 0.00 42.43 2.57
1926 3524 0.101759 CATGGCAATGGCAGCACTAC 59.898 55.000 16.10 0.00 42.43 2.73
1927 3525 1.038681 CCATGGCAATGGCAGCACTA 61.039 55.000 16.10 0.00 46.89 2.74
1982 3586 1.717791 ATCACCAATGCCATCACGCG 61.718 55.000 3.53 3.53 0.00 6.01
1993 3597 7.693969 AGAAGAAATTCGAGAAATCACCAAT 57.306 32.000 0.00 0.00 0.00 3.16
2050 3655 1.374758 GGCTGGTCAGGAGTTCACG 60.375 63.158 0.00 0.00 0.00 4.35
2126 3733 7.504924 TGAACAATCGAAAAATTACACCTCT 57.495 32.000 0.00 0.00 0.00 3.69
2129 3736 7.924103 ACTTGAACAATCGAAAAATTACACC 57.076 32.000 0.00 0.00 0.00 4.16
2206 3898 5.989477 TGTGTCCCAAGATATTCAGTTAGG 58.011 41.667 0.00 0.00 0.00 2.69
2221 3913 2.502947 CTGGAGATGATCTTGTGTCCCA 59.497 50.000 0.00 0.00 0.00 4.37
2222 3914 2.744494 GCTGGAGATGATCTTGTGTCCC 60.744 54.545 0.00 0.00 0.00 4.46
2224 3916 2.559440 GGCTGGAGATGATCTTGTGTC 58.441 52.381 0.00 0.00 0.00 3.67
2225 3917 1.134580 CGGCTGGAGATGATCTTGTGT 60.135 52.381 0.00 0.00 0.00 3.72
2226 3918 1.134580 ACGGCTGGAGATGATCTTGTG 60.135 52.381 0.00 0.00 0.00 3.33
2227 3919 1.134580 CACGGCTGGAGATGATCTTGT 60.135 52.381 0.00 0.00 0.00 3.16
2228 3920 1.579698 CACGGCTGGAGATGATCTTG 58.420 55.000 0.00 0.00 0.00 3.02
2233 3925 3.785859 GGGCACGGCTGGAGATGA 61.786 66.667 0.00 0.00 0.00 2.92
2246 3938 2.713531 GAAGGAGCTTGTTGGGGGCA 62.714 60.000 0.00 0.00 0.00 5.36
2296 4002 3.857038 GGGACGCGATTGGGCCTA 61.857 66.667 15.93 0.00 0.00 3.93
2304 4010 4.162690 GGCTTCTGGGGACGCGAT 62.163 66.667 15.93 0.00 37.56 4.58
2411 4118 3.120304 GCTAGGATTTCGCGTCAAAAACT 60.120 43.478 5.77 5.76 0.00 2.66
2457 4164 0.801067 ATGAGGTAGACGAAACGCGC 60.801 55.000 5.73 0.00 46.04 6.86
2488 4195 1.338890 TGGTATTGATTCCCCGCGGA 61.339 55.000 30.73 7.23 35.88 5.54
2569 4297 4.054455 CGTGTGTACGTGTGGCGC 62.054 66.667 0.00 0.00 44.99 6.53
2595 4775 2.282407 GCTTTTTATAGCGACGGGGAA 58.718 47.619 0.00 0.00 0.00 3.97
2596 4776 1.473788 GGCTTTTTATAGCGACGGGGA 60.474 52.381 0.00 0.00 42.15 4.81
2600 4780 1.257155 GGACGGCTTTTTATAGCGACG 59.743 52.381 0.00 0.00 42.15 5.12
2601 4781 1.596260 GGGACGGCTTTTTATAGCGAC 59.404 52.381 0.00 0.00 42.15 5.19
2602 4782 1.483415 AGGGACGGCTTTTTATAGCGA 59.517 47.619 0.00 0.00 42.15 4.93
2609 4789 0.037232 CGAGAGAGGGACGGCTTTTT 60.037 55.000 0.00 0.00 0.00 1.94
2642 4822 2.569134 GACTGCGAGCGAAGGAGT 59.431 61.111 2.56 3.35 42.95 3.85
2652 4832 3.134792 GCGAGAGAGGGACTGCGA 61.135 66.667 0.00 0.00 41.55 5.10
2677 4860 4.171234 AGAGAGAGAGAGAGAGATAGGGG 58.829 52.174 0.00 0.00 0.00 4.79
2681 4864 5.087323 GGGAGAGAGAGAGAGAGAGAGATA 58.913 50.000 0.00 0.00 0.00 1.98
2683 4866 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
2684 4867 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
2794 4988 2.439156 GGCCTCCCACTCATGCAC 60.439 66.667 0.00 0.00 0.00 4.57
2956 7481 2.579201 CCGCACTTCCTCCGACAT 59.421 61.111 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.