Multiple sequence alignment - TraesCS4D01G226000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G226000 chr4D 100.000 3135 0 0 1 3135 384977356 384974222 0.000000e+00 5790.0
1 TraesCS4D01G226000 chr4D 83.871 496 54 15 1 482 385190685 385190202 1.710000e-122 449.0
2 TraesCS4D01G226000 chr4D 99.265 136 1 0 2389 2524 384974834 384974699 2.410000e-61 246.0
3 TraesCS4D01G226000 chr4D 99.265 136 1 0 2523 2658 384974968 384974833 2.410000e-61 246.0
4 TraesCS4D01G226000 chr4D 75.483 518 92 17 1 487 230617299 230617812 1.460000e-53 220.0
5 TraesCS4D01G226000 chr4A 88.846 1820 101 34 761 2524 66610201 66608428 0.000000e+00 2143.0
6 TraesCS4D01G226000 chr4A 91.256 995 64 14 751 1726 66761649 66760659 0.000000e+00 1334.0
7 TraesCS4D01G226000 chr4A 87.262 1154 90 31 867 1999 66802700 66801583 0.000000e+00 1264.0
8 TraesCS4D01G226000 chr4A 93.277 476 23 6 2523 2993 66608565 66608094 0.000000e+00 693.0
9 TraesCS4D01G226000 chr4A 94.604 278 8 1 1722 1999 66755287 66755017 1.040000e-114 424.0
10 TraesCS4D01G226000 chr4A 91.925 161 6 1 1839 1999 66772026 66771873 5.260000e-53 219.0
11 TraesCS4D01G226000 chr4A 92.157 153 5 4 1847 1999 66771136 66770991 3.170000e-50 209.0
12 TraesCS4D01G226000 chr4B 86.857 1826 133 43 756 2507 471957797 471956005 0.000000e+00 1943.0
13 TraesCS4D01G226000 chr4B 87.473 455 26 10 2523 2975 471956119 471955694 2.170000e-136 496.0
14 TraesCS4D01G226000 chr4B 86.709 158 18 3 487 643 395734950 395734795 4.160000e-39 172.0
15 TraesCS4D01G226000 chr5D 79.151 518 76 14 1 489 303939526 303940040 2.330000e-86 329.0
16 TraesCS4D01G226000 chr2B 77.457 519 90 8 1 493 313530782 313530265 5.120000e-73 285.0
17 TraesCS4D01G226000 chr2B 78.333 240 37 14 488 719 169378238 169378470 1.170000e-29 141.0
18 TraesCS4D01G226000 chr2B 83.065 124 21 0 364 487 313491316 313491193 2.560000e-21 113.0
19 TraesCS4D01G226000 chr7D 76.864 523 79 29 1 487 191503285 191502769 1.120000e-64 257.0
20 TraesCS4D01G226000 chr7D 79.070 344 58 9 1 333 92560663 92561003 1.130000e-54 224.0
21 TraesCS4D01G226000 chr7D 93.478 92 1 2 2985 3071 426558990 426558899 7.060000e-27 132.0
22 TraesCS4D01G226000 chr7D 73.566 401 81 16 105 487 602198434 602198041 2.540000e-26 130.0
23 TraesCS4D01G226000 chr7A 76.986 491 84 22 10 486 442579898 442579423 1.440000e-63 254.0
24 TraesCS4D01G226000 chr6B 81.040 327 48 10 1 316 321273980 321274303 6.710000e-62 248.0
25 TraesCS4D01G226000 chr6B 77.824 239 43 8 488 718 40071495 40071731 4.220000e-29 139.0
26 TraesCS4D01G226000 chr6B 80.800 125 21 1 364 488 321274307 321274428 9.260000e-16 95.3
27 TraesCS4D01G226000 chr6D 80.734 327 51 8 1 316 199633029 199633354 8.690000e-61 244.0
28 TraesCS4D01G226000 chr6D 77.459 244 41 12 488 722 106034345 106034583 1.960000e-27 134.0
29 TraesCS4D01G226000 chr6D 91.089 101 4 1 2985 3080 146072816 146072916 7.060000e-27 132.0
30 TraesCS4D01G226000 chr7B 76.104 498 99 17 1 486 131821240 131821729 3.120000e-60 243.0
31 TraesCS4D01G226000 chr5A 80.685 321 46 10 1 308 248526960 248527277 5.230000e-58 235.0
32 TraesCS4D01G226000 chr3D 76.278 489 85 23 1 467 398464301 398464780 6.760000e-57 231.0
33 TraesCS4D01G226000 chr3D 82.375 261 29 11 1 248 407707388 407707132 8.810000e-51 211.0
34 TraesCS4D01G226000 chr3D 95.402 87 4 0 2985 3071 61804524 61804610 4.220000e-29 139.0
35 TraesCS4D01G226000 chr3D 97.531 81 2 0 2991 3071 61804611 61804531 4.220000e-29 139.0
36 TraesCS4D01G226000 chr3D 85.227 88 13 0 400 487 253800826 253800739 1.200000e-14 91.6
37 TraesCS4D01G226000 chr1A 74.303 502 98 25 1 485 11946443 11945956 1.920000e-42 183.0
38 TraesCS4D01G226000 chr1A 83.721 86 14 0 398 483 67769141 67769226 7.210000e-12 82.4
39 TraesCS4D01G226000 chr3A 86.111 144 17 3 495 637 128538935 128539076 5.420000e-33 152.0
40 TraesCS4D01G226000 chr3A 76.860 242 43 10 489 722 743846392 743846156 1.180000e-24 124.0
41 TraesCS4D01G226000 chr5B 78.571 238 39 10 489 717 228817755 228817521 2.520000e-31 147.0
42 TraesCS4D01G226000 chr5B 92.708 96 1 4 2981 3071 103464767 103464861 1.960000e-27 134.0
43 TraesCS4D01G226000 chr5B 92.632 95 1 4 2982 3071 105695936 105696029 7.060000e-27 132.0
44 TraesCS4D01G226000 chr5B 77.350 234 39 12 489 712 658748328 658748099 3.280000e-25 126.0
45 TraesCS4D01G226000 chr2D 92.079 101 3 2 2985 3080 203023896 203023996 1.520000e-28 137.0
46 TraesCS4D01G226000 chr2D 92.632 95 1 4 2984 3073 270850250 270850343 7.060000e-27 132.0
47 TraesCS4D01G226000 chr2D 88.393 112 8 2 2986 3092 14895366 14895255 2.540000e-26 130.0
48 TraesCS4D01G226000 chr1B 77.215 237 44 8 488 718 330992852 330993084 2.540000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G226000 chr4D 384974222 384977356 3134 True 2094.0 5790 99.5100 1 3135 3 chr4D.!!$R2 3134
1 TraesCS4D01G226000 chr4D 230617299 230617812 513 False 220.0 220 75.4830 1 487 1 chr4D.!!$F1 486
2 TraesCS4D01G226000 chr4A 66608094 66610201 2107 True 1418.0 2143 91.0615 761 2993 2 chr4A.!!$R4 2232
3 TraesCS4D01G226000 chr4A 66760659 66761649 990 True 1334.0 1334 91.2560 751 1726 1 chr4A.!!$R2 975
4 TraesCS4D01G226000 chr4A 66801583 66802700 1117 True 1264.0 1264 87.2620 867 1999 1 chr4A.!!$R3 1132
5 TraesCS4D01G226000 chr4A 66770991 66772026 1035 True 214.0 219 92.0410 1839 1999 2 chr4A.!!$R5 160
6 TraesCS4D01G226000 chr4B 471955694 471957797 2103 True 1219.5 1943 87.1650 756 2975 2 chr4B.!!$R2 2219
7 TraesCS4D01G226000 chr5D 303939526 303940040 514 False 329.0 329 79.1510 1 489 1 chr5D.!!$F1 488
8 TraesCS4D01G226000 chr2B 313530265 313530782 517 True 285.0 285 77.4570 1 493 1 chr2B.!!$R2 492
9 TraesCS4D01G226000 chr7D 191502769 191503285 516 True 257.0 257 76.8640 1 487 1 chr7D.!!$R1 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
584 627 0.109086 CGAGACACCTGCGATGACTT 60.109 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2521 2787 0.168348 CGGATCTGACACGTCGTCTT 59.832 55.0 15.75 0.0 45.6 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.252260 CTGCAAAGCCACCGTTCG 59.748 61.111 0.00 0.00 0.00 3.95
54 55 1.227674 GTGGGCTCGATGATGACCC 60.228 63.158 0.00 0.00 41.24 4.46
102 104 2.045438 TTGCACCGATCGGGCAAT 60.045 55.556 37.40 20.31 42.29 3.56
103 105 2.327002 CTTGCACCGATCGGGCAATG 62.327 60.000 39.06 31.76 44.30 2.82
121 123 0.325671 TGTTTGGGGGTTGCTTTGGA 60.326 50.000 0.00 0.00 0.00 3.53
130 132 0.597377 GTTGCTTTGGAAACCAGCGG 60.597 55.000 0.00 0.00 38.24 5.52
131 133 2.049156 GCTTTGGAAACCAGCGGC 60.049 61.111 0.00 0.00 33.81 6.53
194 205 4.129737 GCACGGCCTCTAGCGTCA 62.130 66.667 0.00 0.00 45.17 4.35
197 208 0.460284 CACGGCCTCTAGCGTCATTT 60.460 55.000 0.00 0.00 45.17 2.32
229 240 3.127099 TCACCCACGTGAAGACTCT 57.873 52.632 19.30 0.00 46.09 3.24
231 242 0.389391 CACCCACGTGAAGACTCTGT 59.611 55.000 19.30 0.00 43.14 3.41
263 274 1.028868 GGCTAAGCTGCCCTTGACTG 61.029 60.000 3.64 0.00 46.82 3.51
271 282 3.710722 CCCTTGACTGGCTCGCCT 61.711 66.667 9.65 0.00 36.94 5.52
272 283 2.348998 CCTTGACTGGCTCGCCTT 59.651 61.111 9.65 0.00 36.94 4.35
420 463 4.321966 GCCATCCGCTAGGCCCTC 62.322 72.222 0.00 0.00 45.18 4.30
423 466 2.913060 ATCCGCTAGGCCCTCGAC 60.913 66.667 0.00 0.00 37.47 4.20
425 468 4.208686 CCGCTAGGCCCTCGACAC 62.209 72.222 0.00 0.00 0.00 3.67
497 540 2.434884 CCCGACAGTGCTCGCATT 60.435 61.111 8.90 0.00 31.98 3.56
498 541 2.034879 CCCGACAGTGCTCGCATTT 61.035 57.895 8.90 0.00 31.98 2.32
499 542 0.739462 CCCGACAGTGCTCGCATTTA 60.739 55.000 8.90 0.00 31.98 1.40
500 543 1.290203 CCGACAGTGCTCGCATTTAT 58.710 50.000 8.90 0.00 31.98 1.40
501 544 1.665679 CCGACAGTGCTCGCATTTATT 59.334 47.619 8.90 0.00 31.98 1.40
502 545 2.285834 CCGACAGTGCTCGCATTTATTC 60.286 50.000 8.90 0.00 31.98 1.75
503 546 2.604914 CGACAGTGCTCGCATTTATTCT 59.395 45.455 0.00 0.00 0.00 2.40
504 547 3.542875 CGACAGTGCTCGCATTTATTCTG 60.543 47.826 0.00 0.00 0.00 3.02
505 548 2.679837 ACAGTGCTCGCATTTATTCTGG 59.320 45.455 8.96 0.00 0.00 3.86
506 549 2.938451 CAGTGCTCGCATTTATTCTGGA 59.062 45.455 0.00 0.00 0.00 3.86
507 550 3.562973 CAGTGCTCGCATTTATTCTGGAT 59.437 43.478 0.00 0.00 0.00 3.41
508 551 4.036027 CAGTGCTCGCATTTATTCTGGATT 59.964 41.667 0.00 0.00 0.00 3.01
509 552 4.641989 AGTGCTCGCATTTATTCTGGATTT 59.358 37.500 0.00 0.00 0.00 2.17
510 553 5.822519 AGTGCTCGCATTTATTCTGGATTTA 59.177 36.000 0.00 0.00 0.00 1.40
511 554 6.488006 AGTGCTCGCATTTATTCTGGATTTAT 59.512 34.615 0.00 0.00 0.00 1.40
512 555 7.013655 AGTGCTCGCATTTATTCTGGATTTATT 59.986 33.333 0.00 0.00 0.00 1.40
513 556 7.649306 GTGCTCGCATTTATTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
514 557 7.862372 TGCTCGCATTTATTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
515 558 7.862372 GCTCGCATTTATTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
516 559 9.390795 CTCGCATTTATTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
517 560 8.352201 TCGCATTTATTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
518 561 8.352201 CGCATTTATTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
525 568 7.333528 TCTGGATTTATTTCAGGATTTTCGG 57.666 36.000 0.00 0.00 0.00 4.30
526 569 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
527 570 4.976116 GGATTTATTTCAGGATTTTCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
528 571 5.220970 GGATTTATTTCAGGATTTTCGGCGA 60.221 40.000 4.99 4.99 0.00 5.54
529 572 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
530 573 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
531 574 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
532 575 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
533 576 1.449601 AGGATTTTCGGCGATGCGT 60.450 52.632 11.76 0.00 0.00 5.24
534 577 0.179094 AGGATTTTCGGCGATGCGTA 60.179 50.000 11.76 0.00 0.00 4.42
535 578 0.865769 GGATTTTCGGCGATGCGTAT 59.134 50.000 11.76 0.00 0.00 3.06
536 579 1.263217 GGATTTTCGGCGATGCGTATT 59.737 47.619 11.76 0.00 0.00 1.89
537 580 2.286772 GGATTTTCGGCGATGCGTATTT 60.287 45.455 11.76 0.00 0.00 1.40
538 581 3.059461 GGATTTTCGGCGATGCGTATTTA 60.059 43.478 11.76 0.00 0.00 1.40
539 582 3.579147 TTTTCGGCGATGCGTATTTAG 57.421 42.857 11.76 0.00 0.00 1.85
540 583 2.212869 TTCGGCGATGCGTATTTAGT 57.787 45.000 11.76 0.00 0.00 2.24
541 584 1.483316 TCGGCGATGCGTATTTAGTG 58.517 50.000 4.99 0.00 0.00 2.74
542 585 0.506932 CGGCGATGCGTATTTAGTGG 59.493 55.000 0.00 0.00 0.00 4.00
543 586 0.865769 GGCGATGCGTATTTAGTGGG 59.134 55.000 0.00 0.00 0.00 4.61
544 587 1.539496 GGCGATGCGTATTTAGTGGGA 60.539 52.381 0.00 0.00 0.00 4.37
545 588 1.792949 GCGATGCGTATTTAGTGGGAG 59.207 52.381 0.00 0.00 0.00 4.30
546 589 2.404215 CGATGCGTATTTAGTGGGAGG 58.596 52.381 0.00 0.00 0.00 4.30
547 590 2.035449 CGATGCGTATTTAGTGGGAGGA 59.965 50.000 0.00 0.00 0.00 3.71
548 591 3.654414 GATGCGTATTTAGTGGGAGGAG 58.346 50.000 0.00 0.00 0.00 3.69
549 592 1.760613 TGCGTATTTAGTGGGAGGAGG 59.239 52.381 0.00 0.00 0.00 4.30
550 593 1.540580 GCGTATTTAGTGGGAGGAGGC 60.541 57.143 0.00 0.00 0.00 4.70
551 594 1.269621 CGTATTTAGTGGGAGGAGGCG 60.270 57.143 0.00 0.00 0.00 5.52
552 595 1.761198 GTATTTAGTGGGAGGAGGCGT 59.239 52.381 0.00 0.00 0.00 5.68
553 596 1.286248 ATTTAGTGGGAGGAGGCGTT 58.714 50.000 0.00 0.00 0.00 4.84
554 597 1.061546 TTTAGTGGGAGGAGGCGTTT 58.938 50.000 0.00 0.00 0.00 3.60
555 598 1.061546 TTAGTGGGAGGAGGCGTTTT 58.938 50.000 0.00 0.00 0.00 2.43
556 599 1.061546 TAGTGGGAGGAGGCGTTTTT 58.938 50.000 0.00 0.00 0.00 1.94
557 600 1.061546 AGTGGGAGGAGGCGTTTTTA 58.938 50.000 0.00 0.00 0.00 1.52
558 601 1.633945 AGTGGGAGGAGGCGTTTTTAT 59.366 47.619 0.00 0.00 0.00 1.40
559 602 2.014857 GTGGGAGGAGGCGTTTTTATC 58.985 52.381 0.00 0.00 0.00 1.75
560 603 1.296727 GGGAGGAGGCGTTTTTATCG 58.703 55.000 0.00 0.00 0.00 2.92
561 604 1.134610 GGGAGGAGGCGTTTTTATCGA 60.135 52.381 0.00 0.00 0.00 3.59
562 605 1.931841 GGAGGAGGCGTTTTTATCGAC 59.068 52.381 0.00 0.00 36.48 4.20
576 619 2.168947 TCGACTACGAGACACCTGC 58.831 57.895 0.00 0.00 43.81 4.85
577 620 1.226046 CGACTACGAGACACCTGCG 60.226 63.158 0.00 0.00 42.66 5.18
578 621 1.632948 CGACTACGAGACACCTGCGA 61.633 60.000 0.00 0.00 42.66 5.10
579 622 0.733729 GACTACGAGACACCTGCGAT 59.266 55.000 0.00 0.00 0.00 4.58
580 623 0.452184 ACTACGAGACACCTGCGATG 59.548 55.000 0.00 0.00 0.00 3.84
581 624 0.733150 CTACGAGACACCTGCGATGA 59.267 55.000 0.00 0.00 0.00 2.92
582 625 0.450583 TACGAGACACCTGCGATGAC 59.549 55.000 0.00 0.00 0.00 3.06
583 626 1.244697 ACGAGACACCTGCGATGACT 61.245 55.000 0.00 0.00 0.00 3.41
584 627 0.109086 CGAGACACCTGCGATGACTT 60.109 55.000 0.00 0.00 0.00 3.01
585 628 1.634702 GAGACACCTGCGATGACTTC 58.365 55.000 0.00 0.00 0.00 3.01
619 662 8.798859 ATCTAAAATGATATGCGGCTTAATCT 57.201 30.769 0.00 0.00 0.00 2.40
620 663 8.256611 TCTAAAATGATATGCGGCTTAATCTC 57.743 34.615 0.00 0.00 0.00 2.75
621 664 8.097038 TCTAAAATGATATGCGGCTTAATCTCT 58.903 33.333 0.00 0.00 0.00 3.10
622 665 6.734104 AAATGATATGCGGCTTAATCTCTC 57.266 37.500 0.00 0.00 0.00 3.20
623 666 3.838120 TGATATGCGGCTTAATCTCTCG 58.162 45.455 0.00 0.00 0.00 4.04
624 667 2.724977 TATGCGGCTTAATCTCTCGG 57.275 50.000 0.00 0.00 0.00 4.63
625 668 1.040646 ATGCGGCTTAATCTCTCGGA 58.959 50.000 0.00 0.00 0.00 4.55
626 669 0.385751 TGCGGCTTAATCTCTCGGAG 59.614 55.000 0.00 0.00 0.00 4.63
627 670 0.669077 GCGGCTTAATCTCTCGGAGA 59.331 55.000 7.60 7.60 43.20 3.71
638 681 4.844998 TCTCTCGGAGATGCTCATAAAG 57.155 45.455 8.39 0.00 33.35 1.85
639 682 4.464947 TCTCTCGGAGATGCTCATAAAGA 58.535 43.478 8.39 0.00 33.35 2.52
640 683 5.076182 TCTCTCGGAGATGCTCATAAAGAT 58.924 41.667 8.39 0.00 33.35 2.40
641 684 6.241645 TCTCTCGGAGATGCTCATAAAGATA 58.758 40.000 8.39 0.00 33.35 1.98
642 685 6.374053 TCTCTCGGAGATGCTCATAAAGATAG 59.626 42.308 8.39 0.00 33.35 2.08
643 686 6.241645 TCTCGGAGATGCTCATAAAGATAGA 58.758 40.000 2.97 0.00 33.89 1.98
644 687 6.374053 TCTCGGAGATGCTCATAAAGATAGAG 59.626 42.308 2.97 0.00 33.89 2.43
651 694 4.877282 GCTCATAAAGATAGAGCGAACCT 58.123 43.478 0.00 0.00 44.37 3.50
652 695 4.683781 GCTCATAAAGATAGAGCGAACCTG 59.316 45.833 0.00 0.00 44.37 4.00
653 696 5.737635 GCTCATAAAGATAGAGCGAACCTGT 60.738 44.000 0.00 0.00 44.37 4.00
654 697 5.592054 TCATAAAGATAGAGCGAACCTGTG 58.408 41.667 0.00 0.00 0.00 3.66
655 698 3.963428 AAAGATAGAGCGAACCTGTGT 57.037 42.857 0.00 0.00 0.00 3.72
656 699 3.963428 AAGATAGAGCGAACCTGTGTT 57.037 42.857 0.00 0.00 37.42 3.32
657 700 3.512033 AGATAGAGCGAACCTGTGTTC 57.488 47.619 0.00 0.00 46.05 3.18
669 712 6.428385 GAACCTGTGTTCTTATGAGAATGG 57.572 41.667 2.93 6.60 46.03 3.16
670 713 4.848357 ACCTGTGTTCTTATGAGAATGGG 58.152 43.478 2.93 6.29 43.41 4.00
671 714 4.289672 ACCTGTGTTCTTATGAGAATGGGT 59.710 41.667 2.93 6.83 43.41 4.51
672 715 4.637534 CCTGTGTTCTTATGAGAATGGGTG 59.362 45.833 2.93 0.00 43.41 4.61
673 716 4.009675 TGTGTTCTTATGAGAATGGGTGC 58.990 43.478 2.93 0.00 43.41 5.01
674 717 4.009675 GTGTTCTTATGAGAATGGGTGCA 58.990 43.478 2.93 0.00 43.41 4.57
675 718 4.641989 GTGTTCTTATGAGAATGGGTGCAT 59.358 41.667 2.93 0.00 43.41 3.96
676 719 5.822519 GTGTTCTTATGAGAATGGGTGCATA 59.177 40.000 2.93 0.00 43.41 3.14
677 720 5.822519 TGTTCTTATGAGAATGGGTGCATAC 59.177 40.000 2.93 0.00 43.41 2.39
678 721 5.894298 TCTTATGAGAATGGGTGCATACT 57.106 39.130 0.00 0.00 0.00 2.12
679 722 6.252599 TCTTATGAGAATGGGTGCATACTT 57.747 37.500 0.00 0.00 0.00 2.24
680 723 6.057533 TCTTATGAGAATGGGTGCATACTTG 58.942 40.000 0.00 0.00 0.00 3.16
681 724 3.719268 TGAGAATGGGTGCATACTTGT 57.281 42.857 0.00 0.00 0.00 3.16
682 725 4.835284 TGAGAATGGGTGCATACTTGTA 57.165 40.909 0.00 0.00 0.00 2.41
683 726 5.372343 TGAGAATGGGTGCATACTTGTAT 57.628 39.130 0.00 0.00 0.00 2.29
684 727 5.125356 TGAGAATGGGTGCATACTTGTATG 58.875 41.667 14.45 14.45 0.00 2.39
685 728 5.104569 TGAGAATGGGTGCATACTTGTATGA 60.105 40.000 20.92 6.82 0.00 2.15
686 729 5.371526 AGAATGGGTGCATACTTGTATGAG 58.628 41.667 20.92 0.46 0.00 2.90
687 730 4.778213 ATGGGTGCATACTTGTATGAGT 57.222 40.909 20.92 0.00 0.00 3.41
688 731 3.872696 TGGGTGCATACTTGTATGAGTG 58.127 45.455 20.92 0.80 0.00 3.51
689 732 2.614057 GGGTGCATACTTGTATGAGTGC 59.386 50.000 20.92 10.11 0.00 4.40
690 733 3.535561 GGTGCATACTTGTATGAGTGCT 58.464 45.455 20.92 0.00 0.00 4.40
691 734 3.941483 GGTGCATACTTGTATGAGTGCTT 59.059 43.478 20.92 0.00 0.00 3.91
692 735 4.201851 GGTGCATACTTGTATGAGTGCTTG 60.202 45.833 20.92 0.00 0.00 4.01
693 736 3.940852 TGCATACTTGTATGAGTGCTTGG 59.059 43.478 20.92 0.00 0.00 3.61
694 737 3.941483 GCATACTTGTATGAGTGCTTGGT 59.059 43.478 20.92 0.00 0.00 3.67
695 738 4.396166 GCATACTTGTATGAGTGCTTGGTT 59.604 41.667 20.92 0.00 0.00 3.67
696 739 5.447818 GCATACTTGTATGAGTGCTTGGTTC 60.448 44.000 20.92 0.00 0.00 3.62
697 740 4.357918 ACTTGTATGAGTGCTTGGTTCT 57.642 40.909 0.00 0.00 0.00 3.01
698 741 5.483685 ACTTGTATGAGTGCTTGGTTCTA 57.516 39.130 0.00 0.00 0.00 2.10
699 742 6.054860 ACTTGTATGAGTGCTTGGTTCTAT 57.945 37.500 0.00 0.00 0.00 1.98
700 743 7.182817 ACTTGTATGAGTGCTTGGTTCTATA 57.817 36.000 0.00 0.00 0.00 1.31
701 744 7.796054 ACTTGTATGAGTGCTTGGTTCTATAT 58.204 34.615 0.00 0.00 0.00 0.86
702 745 8.267894 ACTTGTATGAGTGCTTGGTTCTATATT 58.732 33.333 0.00 0.00 0.00 1.28
703 746 8.437360 TTGTATGAGTGCTTGGTTCTATATTG 57.563 34.615 0.00 0.00 0.00 1.90
704 747 7.564793 TGTATGAGTGCTTGGTTCTATATTGT 58.435 34.615 0.00 0.00 0.00 2.71
705 748 6.932356 ATGAGTGCTTGGTTCTATATTGTG 57.068 37.500 0.00 0.00 0.00 3.33
706 749 5.804639 TGAGTGCTTGGTTCTATATTGTGT 58.195 37.500 0.00 0.00 0.00 3.72
707 750 6.237901 TGAGTGCTTGGTTCTATATTGTGTT 58.762 36.000 0.00 0.00 0.00 3.32
708 751 7.390823 TGAGTGCTTGGTTCTATATTGTGTTA 58.609 34.615 0.00 0.00 0.00 2.41
709 752 7.880713 TGAGTGCTTGGTTCTATATTGTGTTAA 59.119 33.333 0.00 0.00 0.00 2.01
710 753 8.630054 AGTGCTTGGTTCTATATTGTGTTAAA 57.370 30.769 0.00 0.00 0.00 1.52
711 754 9.073475 AGTGCTTGGTTCTATATTGTGTTAAAA 57.927 29.630 0.00 0.00 0.00 1.52
712 755 9.341899 GTGCTTGGTTCTATATTGTGTTAAAAG 57.658 33.333 0.00 0.00 0.00 2.27
713 756 9.290988 TGCTTGGTTCTATATTGTGTTAAAAGA 57.709 29.630 0.00 0.00 0.00 2.52
724 767 9.860898 ATATTGTGTTAAAAGAAAATGAGCCTC 57.139 29.630 0.00 0.00 0.00 4.70
725 768 5.757886 TGTGTTAAAAGAAAATGAGCCTCG 58.242 37.500 0.00 0.00 0.00 4.63
726 769 5.154222 GTGTTAAAAGAAAATGAGCCTCGG 58.846 41.667 0.00 0.00 0.00 4.63
727 770 4.166523 GTTAAAAGAAAATGAGCCTCGGC 58.833 43.478 0.00 0.00 42.33 5.54
737 780 4.577246 GCCTCGGCTTCGCGATCT 62.577 66.667 10.88 0.00 38.26 2.75
738 781 2.656651 CCTCGGCTTCGCGATCTG 60.657 66.667 10.88 10.59 0.00 2.90
739 782 2.656651 CTCGGCTTCGCGATCTGG 60.657 66.667 10.88 0.00 0.00 3.86
740 783 3.126074 CTCGGCTTCGCGATCTGGA 62.126 63.158 10.88 4.90 0.00 3.86
741 784 2.202743 CGGCTTCGCGATCTGGAA 60.203 61.111 10.88 0.00 0.00 3.53
742 785 1.809619 CGGCTTCGCGATCTGGAAA 60.810 57.895 10.88 0.00 0.00 3.13
743 786 1.716172 GGCTTCGCGATCTGGAAAC 59.284 57.895 10.88 0.00 0.00 2.78
744 787 1.019278 GGCTTCGCGATCTGGAAACA 61.019 55.000 10.88 0.00 39.59 2.83
773 816 6.540551 TGCTGCCGAAGTATAAATTTCATGTA 59.459 34.615 0.00 0.00 0.00 2.29
780 823 7.228706 CGAAGTATAAATTTCATGTAGGGCCTT 59.771 37.037 13.45 0.00 0.00 4.35
786 829 0.824109 TCATGTAGGGCCTTCTGACG 59.176 55.000 13.45 0.00 0.00 4.35
802 845 1.282930 GACGTCGAAGTGCCCAGAAC 61.283 60.000 9.23 0.00 0.00 3.01
842 887 0.111253 AACCCCACAAGCCTGAAGAG 59.889 55.000 0.00 0.00 0.00 2.85
882 927 0.978146 AGCGCTCTCCAACCAGGTAT 60.978 55.000 2.64 0.00 39.02 2.73
942 990 0.178068 CCCGTCCTTCCACGATCATT 59.822 55.000 0.00 0.00 42.69 2.57
1009 1057 2.030562 CCCACCGAACAAGCGAGT 59.969 61.111 0.00 0.00 0.00 4.18
1022 1070 4.421948 ACAAGCGAGTAAGATAAGAACCG 58.578 43.478 0.00 0.00 0.00 4.44
1155 1225 3.394836 GCCCCCTTCGCTCTCAGT 61.395 66.667 0.00 0.00 0.00 3.41
1335 1408 4.586235 AACCAGCAGGGCAACGCT 62.586 61.111 0.00 0.00 42.05 5.07
1414 1492 3.389925 TCCCGATGTTCTTTTACACGT 57.610 42.857 0.00 0.00 0.00 4.49
1415 1493 3.731089 TCCCGATGTTCTTTTACACGTT 58.269 40.909 0.00 0.00 0.00 3.99
1450 1528 2.429971 TGTAGGAGAAGCAGAGCATGAG 59.570 50.000 0.00 0.00 0.00 2.90
1463 1547 5.183140 GCAGAGCATGAGGGTTTACTTTAAA 59.817 40.000 0.00 0.00 0.00 1.52
1542 1626 1.144057 GATGGACCGGCTGTTCGAT 59.856 57.895 0.00 0.00 0.00 3.59
1551 1635 1.515519 GCTGTTCGATGACGCCGTA 60.516 57.895 0.00 0.00 39.58 4.02
1949 2046 4.216472 GTGATGAGTGTGTGTGAGACTCTA 59.784 45.833 3.68 0.00 43.89 2.43
1950 2047 4.216472 TGATGAGTGTGTGTGAGACTCTAC 59.784 45.833 3.68 3.98 43.89 2.59
1951 2048 2.885266 TGAGTGTGTGTGAGACTCTACC 59.115 50.000 3.68 0.00 43.89 3.18
1952 2049 2.229302 GAGTGTGTGTGAGACTCTACCC 59.771 54.545 3.68 0.00 40.99 3.69
1953 2050 1.961394 GTGTGTGTGAGACTCTACCCA 59.039 52.381 3.68 0.00 0.00 4.51
2063 2161 4.559229 CGATCCTCTCTGCGCGCA 62.559 66.667 34.12 34.12 0.00 6.09
2111 2209 8.574251 TGTATGTAAATGTACTTGGCAAATCT 57.426 30.769 0.00 0.00 0.00 2.40
2184 2293 2.159099 TGTATCGAGACATCCCTGTTGC 60.159 50.000 9.19 0.00 35.14 4.17
2192 2301 0.948623 CATCCCTGTTGCGTTGTCGA 60.949 55.000 0.00 0.00 39.71 4.20
2202 2311 0.435008 GCGTTGTCGAGTGATGTGAC 59.565 55.000 0.00 0.00 39.71 3.67
2206 2315 0.666374 TGTCGAGTGATGTGACGTGT 59.334 50.000 0.00 0.00 35.40 4.49
2207 2316 1.066454 TGTCGAGTGATGTGACGTGTT 59.934 47.619 0.00 0.00 35.40 3.32
2208 2317 1.714460 GTCGAGTGATGTGACGTGTTC 59.286 52.381 0.00 0.00 0.00 3.18
2225 2337 2.813754 TGTTCTTCTTTCAGAATGCGGG 59.186 45.455 0.00 0.00 35.23 6.13
2226 2338 2.113860 TCTTCTTTCAGAATGCGGGG 57.886 50.000 0.00 0.00 33.13 5.73
2234 2346 2.830370 GAATGCGGGGGAAGCTGG 60.830 66.667 0.00 0.00 35.28 4.85
2283 2404 6.596888 CACATCCTGATGAATTTGTAGAGTGT 59.403 38.462 13.81 0.00 41.20 3.55
2354 2481 9.620660 TTCTTTTCTTCACTTTTGTTAGTCAAC 57.379 29.630 0.00 0.00 35.61 3.18
2356 2483 9.573133 CTTTTCTTCACTTTTGTTAGTCAACAT 57.427 29.630 0.00 0.00 44.01 2.71
2360 2487 7.338196 TCTTCACTTTTGTTAGTCAACATGGAA 59.662 33.333 0.00 0.00 44.01 3.53
2364 2491 4.846779 TTGTTAGTCAACATGGAAAGGC 57.153 40.909 0.00 0.00 44.01 4.35
2383 2649 1.824230 GCTCGGATGCTCTCCTATCAT 59.176 52.381 4.67 0.00 42.47 2.45
2493 2759 4.340950 GGAGTCCTTGAAAATCAACCAACA 59.659 41.667 0.41 0.00 32.21 3.33
2494 2760 5.262588 AGTCCTTGAAAATCAACCAACAC 57.737 39.130 0.00 0.00 32.21 3.32
2495 2761 4.709397 AGTCCTTGAAAATCAACCAACACA 59.291 37.500 0.00 0.00 32.21 3.72
2496 2762 4.803613 GTCCTTGAAAATCAACCAACACAC 59.196 41.667 0.00 0.00 32.21 3.82
2497 2763 4.464244 TCCTTGAAAATCAACCAACACACA 59.536 37.500 0.00 0.00 32.21 3.72
2498 2764 4.805192 CCTTGAAAATCAACCAACACACAG 59.195 41.667 0.00 0.00 32.21 3.66
2499 2765 5.394005 CCTTGAAAATCAACCAACACACAGA 60.394 40.000 0.00 0.00 32.21 3.41
2500 2766 5.850557 TGAAAATCAACCAACACACAGAT 57.149 34.783 0.00 0.00 0.00 2.90
2501 2767 5.590145 TGAAAATCAACCAACACACAGATG 58.410 37.500 0.00 0.00 0.00 2.90
2502 2768 5.126869 TGAAAATCAACCAACACACAGATGT 59.873 36.000 0.00 0.00 40.80 3.06
2503 2769 8.317563 TTGAAAATCAACCAACACACAGATGTG 61.318 37.037 11.35 11.35 45.44 3.21
2515 2781 4.492791 CACAGATGTGTTGATTGCTTCA 57.507 40.909 4.77 0.00 40.96 3.02
2516 2782 4.862350 CACAGATGTGTTGATTGCTTCAA 58.138 39.130 4.77 0.00 40.96 2.69
2517 2783 5.466819 CACAGATGTGTTGATTGCTTCAAT 58.533 37.500 4.77 0.00 45.77 2.57
2518 2784 5.924254 CACAGATGTGTTGATTGCTTCAATT 59.076 36.000 4.77 0.00 45.77 2.32
2519 2785 6.089016 CACAGATGTGTTGATTGCTTCAATTC 59.911 38.462 4.77 4.19 45.77 2.17
2520 2786 5.285370 CAGATGTGTTGATTGCTTCAATTCG 59.715 40.000 6.04 0.00 45.77 3.34
2521 2787 4.827304 TGTGTTGATTGCTTCAATTCGA 57.173 36.364 6.04 0.00 45.77 3.71
2522 2788 5.180367 TGTGTTGATTGCTTCAATTCGAA 57.820 34.783 0.00 0.00 45.77 3.71
2541 2807 3.976758 ACGACGTGTCAGATCCGA 58.023 55.556 0.00 0.00 0.00 4.55
2542 2808 1.500844 ACGACGTGTCAGATCCGAC 59.499 57.895 0.00 1.87 36.40 4.79
2543 2809 1.580385 CGACGTGTCAGATCCGACG 60.580 63.158 4.66 2.21 38.84 5.12
2544 2810 1.226323 GACGTGTCAGATCCGACGG 60.226 63.158 7.84 7.84 38.84 4.79
2545 2811 2.579787 CGTGTCAGATCCGACGGC 60.580 66.667 9.66 0.00 38.84 5.68
2546 2812 2.202756 GTGTCAGATCCGACGGCC 60.203 66.667 9.66 3.31 38.84 6.13
2547 2813 3.822192 TGTCAGATCCGACGGCCG 61.822 66.667 26.86 26.86 38.84 6.13
2565 2831 4.767255 CTGCAGCTCCACCCGTCC 62.767 72.222 0.00 0.00 0.00 4.79
2571 2837 3.145551 CTCCACCCGTCCCCGTAG 61.146 72.222 0.00 0.00 0.00 3.51
2574 2840 4.143333 CACCCGTCCCCGTAGCTG 62.143 72.222 0.00 0.00 0.00 4.24
2577 2843 4.514577 CCGTCCCCGTAGCTGCAG 62.515 72.222 10.11 10.11 0.00 4.41
2579 2845 4.082523 GTCCCCGTAGCTGCAGCA 62.083 66.667 38.24 22.31 45.16 4.41
2580 2846 3.318384 TCCCCGTAGCTGCAGCAA 61.318 61.111 38.24 12.93 45.16 3.91
2581 2847 3.127533 CCCCGTAGCTGCAGCAAC 61.128 66.667 38.24 11.74 45.16 4.17
2582 2848 3.490759 CCCGTAGCTGCAGCAACG 61.491 66.667 38.24 25.15 45.16 4.10
2583 2849 2.432456 CCGTAGCTGCAGCAACGA 60.432 61.111 38.24 18.83 45.16 3.85
2584 2850 2.447887 CCGTAGCTGCAGCAACGAG 61.448 63.158 38.24 23.24 45.16 4.18
2585 2851 2.781300 GTAGCTGCAGCAACGAGC 59.219 61.111 38.24 17.84 45.16 5.03
2597 2863 3.122937 GCAACGAGCAGATAAACTTGG 57.877 47.619 0.00 0.00 44.79 3.61
2598 2864 2.484264 GCAACGAGCAGATAAACTTGGT 59.516 45.455 0.00 0.00 44.79 3.67
2599 2865 3.058224 GCAACGAGCAGATAAACTTGGTT 60.058 43.478 0.00 0.00 44.79 3.67
2600 2866 4.556699 GCAACGAGCAGATAAACTTGGTTT 60.557 41.667 0.00 1.37 44.79 3.27
2601 2867 5.519722 CAACGAGCAGATAAACTTGGTTTT 58.480 37.500 0.99 0.00 37.01 2.43
2602 2868 5.358298 ACGAGCAGATAAACTTGGTTTTC 57.642 39.130 0.99 0.76 37.01 2.29
2603 2869 4.819630 ACGAGCAGATAAACTTGGTTTTCA 59.180 37.500 0.99 0.00 37.01 2.69
2604 2870 5.049405 ACGAGCAGATAAACTTGGTTTTCAG 60.049 40.000 0.99 0.00 37.01 3.02
2605 2871 5.617751 CGAGCAGATAAACTTGGTTTTCAGG 60.618 44.000 0.99 0.00 37.01 3.86
2606 2872 5.385198 AGCAGATAAACTTGGTTTTCAGGA 58.615 37.500 0.99 0.00 37.01 3.86
2607 2873 5.474876 AGCAGATAAACTTGGTTTTCAGGAG 59.525 40.000 0.99 0.00 37.01 3.69
2608 2874 5.241728 GCAGATAAACTTGGTTTTCAGGAGT 59.758 40.000 0.99 0.00 37.01 3.85
2609 2875 6.568653 GCAGATAAACTTGGTTTTCAGGAGTC 60.569 42.308 0.99 0.00 37.01 3.36
2610 2876 6.004574 AGATAAACTTGGTTTTCAGGAGTCC 58.995 40.000 0.00 0.00 37.01 3.85
2611 2877 3.953542 AACTTGGTTTTCAGGAGTCCT 57.046 42.857 5.62 5.62 0.00 3.85
2612 2878 3.953542 ACTTGGTTTTCAGGAGTCCTT 57.046 42.857 9.68 0.00 0.00 3.36
2613 2879 3.555966 ACTTGGTTTTCAGGAGTCCTTG 58.444 45.455 9.68 5.61 0.00 3.61
2614 2880 3.202151 ACTTGGTTTTCAGGAGTCCTTGA 59.798 43.478 9.68 8.08 0.00 3.02
2615 2881 3.943671 TGGTTTTCAGGAGTCCTTGAA 57.056 42.857 9.68 13.70 0.00 2.69
2616 2882 4.243793 TGGTTTTCAGGAGTCCTTGAAA 57.756 40.909 22.50 22.50 32.87 2.69
2617 2883 4.605183 TGGTTTTCAGGAGTCCTTGAAAA 58.395 39.130 27.76 27.76 37.80 2.29
2618 2884 5.208121 TGGTTTTCAGGAGTCCTTGAAAAT 58.792 37.500 30.73 6.06 39.81 1.82
2619 2885 5.301805 TGGTTTTCAGGAGTCCTTGAAAATC 59.698 40.000 30.73 30.30 39.81 2.17
2620 2886 5.301805 GGTTTTCAGGAGTCCTTGAAAATCA 59.698 40.000 30.65 18.94 39.81 2.57
2621 2887 6.183360 GGTTTTCAGGAGTCCTTGAAAATCAA 60.183 38.462 30.65 18.73 39.81 2.57
2622 2888 6.391227 TTTCAGGAGTCCTTGAAAATCAAC 57.609 37.500 23.39 0.00 32.30 3.18
2623 2889 4.398319 TCAGGAGTCCTTGAAAATCAACC 58.602 43.478 9.68 0.00 32.21 3.77
2624 2890 4.141274 TCAGGAGTCCTTGAAAATCAACCA 60.141 41.667 9.68 0.00 32.21 3.67
2686 3046 0.173708 CAGTCCTAACCTGAGTCGCC 59.826 60.000 0.00 0.00 31.38 5.54
2927 3478 4.898765 TGCTGTTGCTGCTGGGCA 62.899 61.111 0.00 3.76 40.74 5.36
2954 3505 1.087202 CACCTTGCGCGCCATAGTAA 61.087 55.000 30.77 14.13 0.00 2.24
2975 3526 2.159296 ACTCTGCGACACGTATGCAATA 60.159 45.455 9.40 1.67 38.30 1.90
3004 3555 4.750021 AAAAATACTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
3005 3556 2.378378 AATACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
3006 3557 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
3007 3558 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
3008 3559 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3009 3560 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3010 3561 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3011 3562 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3012 3563 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3013 3564 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3014 3565 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3015 3566 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3016 3567 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3017 3568 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3018 3569 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3019 3570 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
3020 3571 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
3021 3572 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
3022 3573 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
3023 3574 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
3024 3575 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
3025 3576 9.226606 CCGTCCCATAATATAAGAGCATTTTTA 57.773 33.333 0.00 0.00 0.00 1.52
3061 3612 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3062 3613 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3063 3614 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3064 3615 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3065 3616 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3066 3617 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3067 3618 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3068 3619 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3069 3620 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3070 3621 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3071 3622 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
3072 3623 2.852714 TATGGGACGGAGGGAGTAAA 57.147 50.000 0.00 0.00 0.00 2.01
3073 3624 1.961133 ATGGGACGGAGGGAGTAAAA 58.039 50.000 0.00 0.00 0.00 1.52
3074 3625 0.978907 TGGGACGGAGGGAGTAAAAC 59.021 55.000 0.00 0.00 0.00 2.43
3075 3626 1.273759 GGGACGGAGGGAGTAAAACT 58.726 55.000 0.00 0.00 0.00 2.66
3076 3627 1.627329 GGGACGGAGGGAGTAAAACTT 59.373 52.381 0.00 0.00 0.00 2.66
3077 3628 2.039480 GGGACGGAGGGAGTAAAACTTT 59.961 50.000 0.00 0.00 0.00 2.66
3078 3629 3.261643 GGGACGGAGGGAGTAAAACTTTA 59.738 47.826 0.00 0.00 0.00 1.85
3079 3630 4.080695 GGGACGGAGGGAGTAAAACTTTAT 60.081 45.833 0.00 0.00 0.00 1.40
3080 3631 5.494724 GGACGGAGGGAGTAAAACTTTATT 58.505 41.667 0.00 0.00 0.00 1.40
3081 3632 5.942236 GGACGGAGGGAGTAAAACTTTATTT 59.058 40.000 0.00 0.00 0.00 1.40
3082 3633 6.432162 GGACGGAGGGAGTAAAACTTTATTTT 59.568 38.462 0.00 0.00 0.00 1.82
3083 3634 7.040201 GGACGGAGGGAGTAAAACTTTATTTTT 60.040 37.037 0.00 0.00 33.27 1.94
3084 3635 8.922931 ACGGAGGGAGTAAAACTTTATTTTTA 57.077 30.769 0.00 0.00 31.15 1.52
3085 3636 9.353431 ACGGAGGGAGTAAAACTTTATTTTTAA 57.647 29.630 0.00 0.00 33.71 1.52
3129 3680 5.972107 AACATCAGATTTATAGGCATGGC 57.028 39.130 12.14 12.14 0.00 4.40
3130 3681 4.989277 ACATCAGATTTATAGGCATGGCA 58.011 39.130 22.64 7.94 0.00 4.92
3131 3682 5.387788 ACATCAGATTTATAGGCATGGCAA 58.612 37.500 22.64 7.14 0.00 4.52
3132 3683 5.834742 ACATCAGATTTATAGGCATGGCAAA 59.165 36.000 22.64 13.44 0.00 3.68
3133 3684 6.495872 ACATCAGATTTATAGGCATGGCAAAT 59.504 34.615 22.64 17.51 0.00 2.32
3134 3685 6.982160 TCAGATTTATAGGCATGGCAAATT 57.018 33.333 22.64 8.76 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.492353 CAGGGCGGGGGTCATCAT 61.492 66.667 0.00 0.00 0.00 2.45
67 68 1.000607 CAAGAAGACCAAGACGACGGA 60.001 52.381 0.00 0.00 0.00 4.69
102 104 0.325671 TCCAAAGCAACCCCCAAACA 60.326 50.000 0.00 0.00 0.00 2.83
103 105 0.833949 TTCCAAAGCAACCCCCAAAC 59.166 50.000 0.00 0.00 0.00 2.93
121 123 4.603535 AAGGCAGGCCGCTGGTTT 62.604 61.111 17.07 6.48 41.91 3.27
130 132 1.452833 CTAAGGGAGCAAGGCAGGC 60.453 63.158 0.00 0.00 0.00 4.85
131 133 4.972875 CTAAGGGAGCAAGGCAGG 57.027 61.111 0.00 0.00 0.00 4.85
152 155 3.693578 GGATGAGGAGGCTTTTCTCTTTG 59.306 47.826 12.38 0.00 34.39 2.77
325 349 3.499737 CGGACTGAATGGCGCCAC 61.500 66.667 35.50 21.61 0.00 5.01
333 357 2.893398 GTCTCGGGCGGACTGAAT 59.107 61.111 0.00 0.00 33.08 2.57
345 369 2.429236 ACGTCAGCAAGCGTCTCG 60.429 61.111 0.00 0.00 36.54 4.04
353 378 4.680237 CGAGGCCCACGTCAGCAA 62.680 66.667 0.00 0.00 0.00 3.91
407 449 4.435970 TGTCGAGGGCCTAGCGGA 62.436 66.667 5.73 0.00 0.00 5.54
411 453 4.554363 CGCGTGTCGAGGGCCTAG 62.554 72.222 5.73 6.70 41.67 3.02
489 532 7.862372 TGAAATAAATCCAGAATAAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
490 533 9.390795 CTGAAATAAATCCAGAATAAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
491 534 8.352201 CCTGAAATAAATCCAGAATAAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
492 535 8.352201 TCCTGAAATAAATCCAGAATAAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
499 542 8.416329 CCGAAAATCCTGAAATAAATCCAGAAT 58.584 33.333 0.00 0.00 0.00 2.40
500 543 7.630513 GCCGAAAATCCTGAAATAAATCCAGAA 60.631 37.037 0.00 0.00 0.00 3.02
501 544 6.183360 GCCGAAAATCCTGAAATAAATCCAGA 60.183 38.462 0.00 0.00 0.00 3.86
502 545 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
503 546 5.449862 CGCCGAAAATCCTGAAATAAATCCA 60.450 40.000 0.00 0.00 0.00 3.41
504 547 4.976116 CGCCGAAAATCCTGAAATAAATCC 59.024 41.667 0.00 0.00 0.00 3.01
505 548 5.816919 TCGCCGAAAATCCTGAAATAAATC 58.183 37.500 0.00 0.00 0.00 2.17
506 549 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
507 550 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
508 551 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
509 552 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
510 553 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
511 554 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
512 555 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
513 556 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
514 557 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
515 558 0.179094 TACGCATCGCCGAAAATCCT 60.179 50.000 0.00 0.00 0.00 3.24
516 559 0.865769 ATACGCATCGCCGAAAATCC 59.134 50.000 0.00 0.00 0.00 3.01
517 560 2.663279 AATACGCATCGCCGAAAATC 57.337 45.000 0.00 0.00 0.00 2.17
518 561 3.558418 ACTAAATACGCATCGCCGAAAAT 59.442 39.130 0.00 0.00 0.00 1.82
519 562 2.931325 ACTAAATACGCATCGCCGAAAA 59.069 40.909 0.00 0.00 0.00 2.29
520 563 2.283086 CACTAAATACGCATCGCCGAAA 59.717 45.455 0.00 0.00 0.00 3.46
521 564 1.855978 CACTAAATACGCATCGCCGAA 59.144 47.619 0.00 0.00 0.00 4.30
522 565 1.483316 CACTAAATACGCATCGCCGA 58.517 50.000 0.00 0.00 0.00 5.54
523 566 0.506932 CCACTAAATACGCATCGCCG 59.493 55.000 0.00 0.00 0.00 6.46
524 567 0.865769 CCCACTAAATACGCATCGCC 59.134 55.000 0.00 0.00 0.00 5.54
525 568 1.792949 CTCCCACTAAATACGCATCGC 59.207 52.381 0.00 0.00 0.00 4.58
526 569 2.035449 TCCTCCCACTAAATACGCATCG 59.965 50.000 0.00 0.00 0.00 3.84
527 570 3.555168 CCTCCTCCCACTAAATACGCATC 60.555 52.174 0.00 0.00 0.00 3.91
528 571 2.368875 CCTCCTCCCACTAAATACGCAT 59.631 50.000 0.00 0.00 0.00 4.73
529 572 1.760613 CCTCCTCCCACTAAATACGCA 59.239 52.381 0.00 0.00 0.00 5.24
530 573 1.540580 GCCTCCTCCCACTAAATACGC 60.541 57.143 0.00 0.00 0.00 4.42
531 574 1.269621 CGCCTCCTCCCACTAAATACG 60.270 57.143 0.00 0.00 0.00 3.06
532 575 1.761198 ACGCCTCCTCCCACTAAATAC 59.239 52.381 0.00 0.00 0.00 1.89
533 576 2.170012 ACGCCTCCTCCCACTAAATA 57.830 50.000 0.00 0.00 0.00 1.40
534 577 1.286248 AACGCCTCCTCCCACTAAAT 58.714 50.000 0.00 0.00 0.00 1.40
535 578 1.061546 AAACGCCTCCTCCCACTAAA 58.938 50.000 0.00 0.00 0.00 1.85
536 579 1.061546 AAAACGCCTCCTCCCACTAA 58.938 50.000 0.00 0.00 0.00 2.24
537 580 1.061546 AAAAACGCCTCCTCCCACTA 58.938 50.000 0.00 0.00 0.00 2.74
538 581 1.061546 TAAAAACGCCTCCTCCCACT 58.938 50.000 0.00 0.00 0.00 4.00
539 582 2.014857 GATAAAAACGCCTCCTCCCAC 58.985 52.381 0.00 0.00 0.00 4.61
540 583 1.406341 CGATAAAAACGCCTCCTCCCA 60.406 52.381 0.00 0.00 0.00 4.37
541 584 1.134610 TCGATAAAAACGCCTCCTCCC 60.135 52.381 0.00 0.00 0.00 4.30
542 585 1.931841 GTCGATAAAAACGCCTCCTCC 59.068 52.381 0.00 0.00 0.00 4.30
543 586 2.889852 AGTCGATAAAAACGCCTCCTC 58.110 47.619 0.00 0.00 0.00 3.71
544 587 3.733077 CGTAGTCGATAAAAACGCCTCCT 60.733 47.826 0.00 0.00 39.71 3.69
545 588 2.533129 CGTAGTCGATAAAAACGCCTCC 59.467 50.000 0.00 0.00 39.71 4.30
546 589 3.429085 TCGTAGTCGATAAAAACGCCTC 58.571 45.455 0.00 0.00 41.35 4.70
547 590 3.127548 TCTCGTAGTCGATAAAAACGCCT 59.872 43.478 0.00 0.00 45.21 5.52
548 591 3.239254 GTCTCGTAGTCGATAAAAACGCC 59.761 47.826 0.00 0.00 45.21 5.68
549 592 3.848019 TGTCTCGTAGTCGATAAAAACGC 59.152 43.478 0.00 0.00 45.21 4.84
550 593 4.261581 GGTGTCTCGTAGTCGATAAAAACG 59.738 45.833 0.00 0.00 45.21 3.60
551 594 5.285607 CAGGTGTCTCGTAGTCGATAAAAAC 59.714 44.000 0.00 0.00 45.21 2.43
552 595 5.396484 CAGGTGTCTCGTAGTCGATAAAAA 58.604 41.667 0.00 0.00 45.21 1.94
553 596 4.673580 GCAGGTGTCTCGTAGTCGATAAAA 60.674 45.833 0.00 0.00 45.21 1.52
554 597 3.181503 GCAGGTGTCTCGTAGTCGATAAA 60.182 47.826 0.00 0.00 45.21 1.40
555 598 2.353889 GCAGGTGTCTCGTAGTCGATAA 59.646 50.000 0.00 0.00 45.21 1.75
556 599 1.938577 GCAGGTGTCTCGTAGTCGATA 59.061 52.381 0.00 0.00 45.21 2.92
557 600 0.733729 GCAGGTGTCTCGTAGTCGAT 59.266 55.000 0.00 0.00 45.21 3.59
558 601 1.632948 CGCAGGTGTCTCGTAGTCGA 61.633 60.000 0.00 0.00 44.12 4.20
559 602 1.226046 CGCAGGTGTCTCGTAGTCG 60.226 63.158 0.00 0.00 38.55 4.18
560 603 0.733729 ATCGCAGGTGTCTCGTAGTC 59.266 55.000 0.00 0.00 0.00 2.59
561 604 0.452184 CATCGCAGGTGTCTCGTAGT 59.548 55.000 0.00 0.00 0.00 2.73
562 605 0.733150 TCATCGCAGGTGTCTCGTAG 59.267 55.000 0.00 0.00 0.00 3.51
563 606 0.450583 GTCATCGCAGGTGTCTCGTA 59.549 55.000 0.00 0.00 0.00 3.43
564 607 1.213013 GTCATCGCAGGTGTCTCGT 59.787 57.895 0.00 0.00 0.00 4.18
565 608 0.109086 AAGTCATCGCAGGTGTCTCG 60.109 55.000 0.00 0.00 0.00 4.04
566 609 1.634702 GAAGTCATCGCAGGTGTCTC 58.365 55.000 0.00 0.00 0.00 3.36
567 610 0.109086 CGAAGTCATCGCAGGTGTCT 60.109 55.000 0.00 0.00 45.89 3.41
568 611 2.363807 CGAAGTCATCGCAGGTGTC 58.636 57.895 0.00 0.00 45.89 3.67
569 612 4.578913 CGAAGTCATCGCAGGTGT 57.421 55.556 0.00 0.00 45.89 4.16
593 636 9.890629 AGATTAAGCCGCATATCATTTTAGATA 57.109 29.630 0.00 0.00 35.16 1.98
594 637 8.798859 AGATTAAGCCGCATATCATTTTAGAT 57.201 30.769 0.00 0.00 0.00 1.98
595 638 8.097038 AGAGATTAAGCCGCATATCATTTTAGA 58.903 33.333 0.00 0.00 0.00 2.10
596 639 8.261492 AGAGATTAAGCCGCATATCATTTTAG 57.739 34.615 0.00 0.00 0.00 1.85
597 640 7.063426 CGAGAGATTAAGCCGCATATCATTTTA 59.937 37.037 0.00 0.00 0.00 1.52
598 641 6.128445 CGAGAGATTAAGCCGCATATCATTTT 60.128 38.462 0.00 0.00 0.00 1.82
599 642 5.349817 CGAGAGATTAAGCCGCATATCATTT 59.650 40.000 0.00 0.00 0.00 2.32
600 643 4.867047 CGAGAGATTAAGCCGCATATCATT 59.133 41.667 0.00 0.00 0.00 2.57
601 644 4.428209 CGAGAGATTAAGCCGCATATCAT 58.572 43.478 0.00 0.00 0.00 2.45
602 645 3.367395 CCGAGAGATTAAGCCGCATATCA 60.367 47.826 0.00 0.00 0.00 2.15
603 646 3.119459 TCCGAGAGATTAAGCCGCATATC 60.119 47.826 0.00 0.00 0.00 1.63
604 647 2.826128 TCCGAGAGATTAAGCCGCATAT 59.174 45.455 0.00 0.00 0.00 1.78
605 648 2.229062 CTCCGAGAGATTAAGCCGCATA 59.771 50.000 0.00 0.00 0.00 3.14
606 649 1.000283 CTCCGAGAGATTAAGCCGCAT 60.000 52.381 0.00 0.00 0.00 4.73
607 650 0.385751 CTCCGAGAGATTAAGCCGCA 59.614 55.000 0.00 0.00 0.00 5.69
608 651 0.669077 TCTCCGAGAGATTAAGCCGC 59.331 55.000 0.00 0.00 33.35 6.53
609 652 2.924454 GCATCTCCGAGAGATTAAGCCG 60.924 54.545 12.13 3.99 45.86 5.52
610 653 2.298729 AGCATCTCCGAGAGATTAAGCC 59.701 50.000 12.13 2.41 45.86 4.35
611 654 3.005261 TGAGCATCTCCGAGAGATTAAGC 59.995 47.826 12.13 12.41 45.86 3.09
612 655 4.844998 TGAGCATCTCCGAGAGATTAAG 57.155 45.455 12.13 5.09 45.86 1.85
613 656 6.901081 TTATGAGCATCTCCGAGAGATTAA 57.099 37.500 12.13 7.07 45.86 1.40
614 657 6.717084 TCTTTATGAGCATCTCCGAGAGATTA 59.283 38.462 12.13 2.41 45.86 1.75
615 658 5.538053 TCTTTATGAGCATCTCCGAGAGATT 59.462 40.000 12.13 1.97 45.86 2.40
617 660 4.464947 TCTTTATGAGCATCTCCGAGAGA 58.535 43.478 4.07 6.14 43.20 3.10
618 661 4.844998 TCTTTATGAGCATCTCCGAGAG 57.155 45.455 4.07 0.00 34.92 3.20
619 662 6.241645 TCTATCTTTATGAGCATCTCCGAGA 58.758 40.000 0.00 0.00 34.92 4.04
620 663 6.507958 TCTATCTTTATGAGCATCTCCGAG 57.492 41.667 0.00 0.00 34.92 4.63
621 664 6.507958 CTCTATCTTTATGAGCATCTCCGA 57.492 41.667 0.00 0.00 34.92 4.55
629 672 4.683781 CAGGTTCGCTCTATCTTTATGAGC 59.316 45.833 0.00 0.00 46.73 4.26
630 673 5.689514 CACAGGTTCGCTCTATCTTTATGAG 59.310 44.000 0.00 0.00 0.00 2.90
631 674 5.127194 ACACAGGTTCGCTCTATCTTTATGA 59.873 40.000 0.00 0.00 0.00 2.15
632 675 5.352284 ACACAGGTTCGCTCTATCTTTATG 58.648 41.667 0.00 0.00 0.00 1.90
633 676 5.599999 ACACAGGTTCGCTCTATCTTTAT 57.400 39.130 0.00 0.00 0.00 1.40
634 677 5.401531 AACACAGGTTCGCTCTATCTTTA 57.598 39.130 0.00 0.00 29.00 1.85
635 678 3.963428 ACACAGGTTCGCTCTATCTTT 57.037 42.857 0.00 0.00 0.00 2.52
636 679 3.851098 GAACACAGGTTCGCTCTATCTT 58.149 45.455 0.00 0.00 43.54 2.40
637 680 3.512033 GAACACAGGTTCGCTCTATCT 57.488 47.619 0.00 0.00 43.54 1.98
647 690 5.222130 ACCCATTCTCATAAGAACACAGGTT 60.222 40.000 0.00 0.00 44.13 3.50
648 691 4.289672 ACCCATTCTCATAAGAACACAGGT 59.710 41.667 0.00 0.00 44.13 4.00
649 692 4.637534 CACCCATTCTCATAAGAACACAGG 59.362 45.833 0.00 0.00 44.13 4.00
650 693 4.095483 GCACCCATTCTCATAAGAACACAG 59.905 45.833 0.00 0.00 44.13 3.66
651 694 4.009675 GCACCCATTCTCATAAGAACACA 58.990 43.478 0.00 0.00 44.13 3.72
652 695 4.009675 TGCACCCATTCTCATAAGAACAC 58.990 43.478 0.00 0.00 44.13 3.32
653 696 4.299586 TGCACCCATTCTCATAAGAACA 57.700 40.909 0.00 0.00 44.13 3.18
654 697 6.058183 AGTATGCACCCATTCTCATAAGAAC 58.942 40.000 0.00 0.00 44.13 3.01
655 698 6.252599 AGTATGCACCCATTCTCATAAGAA 57.747 37.500 0.00 0.00 45.36 2.52
656 699 5.894298 AGTATGCACCCATTCTCATAAGA 57.106 39.130 0.00 0.00 32.85 2.10
657 700 5.824624 ACAAGTATGCACCCATTCTCATAAG 59.175 40.000 0.00 0.00 29.96 1.73
658 701 5.754782 ACAAGTATGCACCCATTCTCATAA 58.245 37.500 0.00 0.00 29.96 1.90
659 702 5.372343 ACAAGTATGCACCCATTCTCATA 57.628 39.130 0.00 0.00 29.96 2.15
660 703 4.240881 ACAAGTATGCACCCATTCTCAT 57.759 40.909 0.00 0.00 29.96 2.90
661 704 3.719268 ACAAGTATGCACCCATTCTCA 57.281 42.857 0.00 0.00 29.96 3.27
662 705 5.368145 TCATACAAGTATGCACCCATTCTC 58.632 41.667 13.93 0.00 41.92 2.87
663 706 5.104360 ACTCATACAAGTATGCACCCATTCT 60.104 40.000 13.93 0.00 41.92 2.40
664 707 5.008019 CACTCATACAAGTATGCACCCATTC 59.992 44.000 13.93 0.00 41.92 2.67
665 708 4.883585 CACTCATACAAGTATGCACCCATT 59.116 41.667 13.93 0.00 41.92 3.16
666 709 4.454678 CACTCATACAAGTATGCACCCAT 58.545 43.478 13.93 0.00 41.92 4.00
667 710 3.872696 CACTCATACAAGTATGCACCCA 58.127 45.455 13.93 0.00 41.92 4.51
668 711 2.614057 GCACTCATACAAGTATGCACCC 59.386 50.000 13.93 1.68 41.92 4.61
669 712 3.535561 AGCACTCATACAAGTATGCACC 58.464 45.455 13.93 4.39 41.92 5.01
670 713 4.201851 CCAAGCACTCATACAAGTATGCAC 60.202 45.833 13.93 4.97 41.92 4.57
671 714 3.940852 CCAAGCACTCATACAAGTATGCA 59.059 43.478 13.93 0.00 41.92 3.96
672 715 3.941483 ACCAAGCACTCATACAAGTATGC 59.059 43.478 13.93 5.57 41.92 3.14
673 716 5.877012 AGAACCAAGCACTCATACAAGTATG 59.123 40.000 12.82 12.82 43.16 2.39
674 717 6.054860 AGAACCAAGCACTCATACAAGTAT 57.945 37.500 0.00 0.00 0.00 2.12
675 718 5.483685 AGAACCAAGCACTCATACAAGTA 57.516 39.130 0.00 0.00 0.00 2.24
676 719 4.357918 AGAACCAAGCACTCATACAAGT 57.642 40.909 0.00 0.00 0.00 3.16
677 720 8.554528 CAATATAGAACCAAGCACTCATACAAG 58.445 37.037 0.00 0.00 0.00 3.16
678 721 8.046708 ACAATATAGAACCAAGCACTCATACAA 58.953 33.333 0.00 0.00 0.00 2.41
679 722 7.495606 CACAATATAGAACCAAGCACTCATACA 59.504 37.037 0.00 0.00 0.00 2.29
680 723 7.495934 ACACAATATAGAACCAAGCACTCATAC 59.504 37.037 0.00 0.00 0.00 2.39
681 724 7.564793 ACACAATATAGAACCAAGCACTCATA 58.435 34.615 0.00 0.00 0.00 2.15
682 725 6.418101 ACACAATATAGAACCAAGCACTCAT 58.582 36.000 0.00 0.00 0.00 2.90
683 726 5.804639 ACACAATATAGAACCAAGCACTCA 58.195 37.500 0.00 0.00 0.00 3.41
684 727 6.743575 AACACAATATAGAACCAAGCACTC 57.256 37.500 0.00 0.00 0.00 3.51
685 728 8.630054 TTTAACACAATATAGAACCAAGCACT 57.370 30.769 0.00 0.00 0.00 4.40
686 729 9.341899 CTTTTAACACAATATAGAACCAAGCAC 57.658 33.333 0.00 0.00 0.00 4.40
687 730 9.290988 TCTTTTAACACAATATAGAACCAAGCA 57.709 29.630 0.00 0.00 0.00 3.91
698 741 9.860898 GAGGCTCATTTTCTTTTAACACAATAT 57.139 29.630 10.25 0.00 0.00 1.28
699 742 8.020819 CGAGGCTCATTTTCTTTTAACACAATA 58.979 33.333 15.95 0.00 0.00 1.90
700 743 6.863126 CGAGGCTCATTTTCTTTTAACACAAT 59.137 34.615 15.95 0.00 0.00 2.71
701 744 6.205784 CGAGGCTCATTTTCTTTTAACACAA 58.794 36.000 15.95 0.00 0.00 3.33
702 745 5.278266 CCGAGGCTCATTTTCTTTTAACACA 60.278 40.000 15.95 0.00 0.00 3.72
703 746 5.154222 CCGAGGCTCATTTTCTTTTAACAC 58.846 41.667 15.95 0.00 0.00 3.32
704 747 4.320935 GCCGAGGCTCATTTTCTTTTAACA 60.321 41.667 15.95 0.00 38.26 2.41
705 748 4.166523 GCCGAGGCTCATTTTCTTTTAAC 58.833 43.478 15.95 0.00 38.26 2.01
706 749 4.434713 GCCGAGGCTCATTTTCTTTTAA 57.565 40.909 15.95 0.00 38.26 1.52
726 769 0.371645 CTGTTTCCAGATCGCGAAGC 59.628 55.000 15.24 8.80 46.83 3.86
727 770 1.002366 CCTGTTTCCAGATCGCGAAG 58.998 55.000 15.24 6.21 41.50 3.79
728 771 1.019278 GCCTGTTTCCAGATCGCGAA 61.019 55.000 15.24 0.00 41.50 4.70
729 772 1.447838 GCCTGTTTCCAGATCGCGA 60.448 57.895 13.09 13.09 41.50 5.87
730 773 1.448540 AGCCTGTTTCCAGATCGCG 60.449 57.895 0.00 0.00 41.50 5.87
731 774 1.986575 GCAGCCTGTTTCCAGATCGC 61.987 60.000 0.00 0.00 41.50 4.58
732 775 0.392193 AGCAGCCTGTTTCCAGATCG 60.392 55.000 0.00 0.00 41.50 3.69
733 776 1.093159 CAGCAGCCTGTTTCCAGATC 58.907 55.000 0.00 0.00 41.50 2.75
734 777 0.964358 GCAGCAGCCTGTTTCCAGAT 60.964 55.000 0.00 0.00 41.50 2.90
735 778 1.601759 GCAGCAGCCTGTTTCCAGA 60.602 57.895 0.00 0.00 41.50 3.86
736 779 2.960170 GCAGCAGCCTGTTTCCAG 59.040 61.111 0.00 0.00 41.26 3.86
746 789 3.971032 AATTTATACTTCGGCAGCAGC 57.029 42.857 0.00 0.00 41.10 5.25
747 790 5.484173 TGAAATTTATACTTCGGCAGCAG 57.516 39.130 0.00 0.00 0.00 4.24
748 791 5.356751 ACATGAAATTTATACTTCGGCAGCA 59.643 36.000 0.00 0.00 0.00 4.41
749 792 5.821204 ACATGAAATTTATACTTCGGCAGC 58.179 37.500 0.00 0.00 0.00 5.25
755 798 8.465273 AAGGCCCTACATGAAATTTATACTTC 57.535 34.615 0.00 0.00 0.00 3.01
773 816 1.878656 CTTCGACGTCAGAAGGCCCT 61.879 60.000 27.63 0.00 40.87 5.19
780 823 2.142357 CTGGGCACTTCGACGTCAGA 62.142 60.000 17.16 10.99 0.00 3.27
786 829 0.249911 ACAGTTCTGGGCACTTCGAC 60.250 55.000 4.82 0.00 0.00 4.20
802 845 5.683743 GGTTCTCTCGATAATTCTCGAACAG 59.316 44.000 15.61 13.76 46.14 3.16
919 964 1.614241 ATCGTGGAAGGACGGGGAAG 61.614 60.000 0.00 0.00 39.88 3.46
942 990 1.203441 AGCAGAGGGGAGTTCATGCA 61.203 55.000 0.00 0.00 36.15 3.96
1009 1057 4.142026 TGCAGCTAAGCGGTTCTTATCTTA 60.142 41.667 1.59 0.00 36.72 2.10
1022 1070 1.665679 TGCTACGAATTGCAGCTAAGC 59.334 47.619 0.00 0.00 36.26 3.09
1263 1336 3.103080 ACGGAGTTGTCCCTATTCTCT 57.897 47.619 0.00 0.00 37.78 3.10
1359 1432 0.178068 ACGGGGAGATGTCAAATCCG 59.822 55.000 10.13 10.13 41.45 4.18
1414 1492 5.626142 TCTCCTACACCTGCAACAAAATAA 58.374 37.500 0.00 0.00 0.00 1.40
1415 1493 5.235850 TCTCCTACACCTGCAACAAAATA 57.764 39.130 0.00 0.00 0.00 1.40
1450 1528 5.720202 CCCTGCATTCTTTAAAGTAAACCC 58.280 41.667 14.74 1.79 0.00 4.11
1463 1547 0.543749 GTCCACTAGCCCTGCATTCT 59.456 55.000 0.00 0.00 0.00 2.40
1672 1756 1.352352 CACCATCACCTTCACCTCCTT 59.648 52.381 0.00 0.00 0.00 3.36
1818 1911 1.081108 GCTCTTGTCGCACTCGTCT 60.081 57.895 0.00 0.00 36.96 4.18
1949 2046 0.252696 TCAGATGCAGGGTACTGGGT 60.253 55.000 0.00 0.00 45.04 4.51
1950 2047 0.467384 CTCAGATGCAGGGTACTGGG 59.533 60.000 0.00 0.00 45.04 4.45
1951 2048 0.467384 CCTCAGATGCAGGGTACTGG 59.533 60.000 0.00 0.00 45.04 4.00
1953 2050 0.326048 AGCCTCAGATGCAGGGTACT 60.326 55.000 0.08 0.00 40.09 2.73
2063 2161 1.569493 GACATGTTCTGCGCAACGT 59.431 52.632 13.05 6.30 0.00 3.99
2111 2209 5.588246 TCAAGCAGCCGAACATTTATTCATA 59.412 36.000 0.00 0.00 0.00 2.15
2120 2219 1.376543 CTGATCAAGCAGCCGAACAT 58.623 50.000 0.00 0.00 0.00 2.71
2184 2293 0.702924 CGTCACATCACTCGACAACG 59.297 55.000 0.00 0.00 41.26 4.10
2192 2301 3.735237 AGAAGAACACGTCACATCACT 57.265 42.857 0.00 0.00 0.00 3.41
2225 2337 2.093658 TCGATTCAGTTACCAGCTTCCC 60.094 50.000 0.00 0.00 0.00 3.97
2226 2338 3.119101 TCTCGATTCAGTTACCAGCTTCC 60.119 47.826 0.00 0.00 0.00 3.46
2234 2346 5.802956 GCTGCCTATATCTCGATTCAGTTAC 59.197 44.000 0.00 0.00 0.00 2.50
2353 2480 0.749454 GCATCCGAGCCTTTCCATGT 60.749 55.000 0.00 0.00 0.00 3.21
2354 2481 0.465097 AGCATCCGAGCCTTTCCATG 60.465 55.000 0.00 0.00 34.23 3.66
2356 2483 1.221840 GAGCATCCGAGCCTTTCCA 59.778 57.895 0.00 0.00 34.23 3.53
2360 2487 3.225235 GGAGAGCATCCGAGCCTT 58.775 61.111 0.00 0.00 38.67 4.35
2383 2649 1.018910 TCTGACACGTCGTCTGACAA 58.981 50.000 17.27 0.00 44.82 3.18
2494 2760 4.492791 TGAAGCAATCAACACATCTGTG 57.507 40.909 8.74 8.74 41.61 3.66
2518 2784 1.128136 GATCTGACACGTCGTCTTCGA 59.872 52.381 15.75 11.11 45.60 3.71
2519 2785 1.525596 GATCTGACACGTCGTCTTCG 58.474 55.000 15.75 7.52 45.60 3.79
2520 2786 1.790838 CGGATCTGACACGTCGTCTTC 60.791 57.143 15.75 0.00 45.60 2.87
2521 2787 0.168348 CGGATCTGACACGTCGTCTT 59.832 55.000 15.75 0.00 45.60 3.01
2522 2788 0.672711 TCGGATCTGACACGTCGTCT 60.673 55.000 15.75 0.00 45.60 4.18
2523 2789 0.520827 GTCGGATCTGACACGTCGTC 60.521 60.000 26.57 10.12 45.61 4.20
2524 2790 1.500844 GTCGGATCTGACACGTCGT 59.499 57.895 26.57 0.00 38.75 4.34
2525 2791 1.580385 CGTCGGATCTGACACGTCG 60.580 63.158 29.48 14.81 38.84 5.12
2526 2792 1.226323 CCGTCGGATCTGACACGTC 60.226 63.158 29.48 7.19 38.84 4.34
2527 2793 2.875485 CCGTCGGATCTGACACGT 59.125 61.111 29.48 0.00 38.84 4.49
2528 2794 2.579787 GCCGTCGGATCTGACACG 60.580 66.667 29.48 20.72 38.84 4.49
2529 2795 2.202756 GGCCGTCGGATCTGACAC 60.203 66.667 29.48 21.45 38.84 3.67
2530 2796 3.822192 CGGCCGTCGGATCTGACA 61.822 66.667 29.48 0.00 38.84 3.58
2548 2814 4.767255 GGACGGGTGGAGCTGCAG 62.767 72.222 8.73 10.11 0.00 4.41
2562 2828 3.605749 TTGCTGCAGCTACGGGGAC 62.606 63.158 36.61 7.74 42.66 4.46
2563 2829 3.318384 TTGCTGCAGCTACGGGGA 61.318 61.111 36.61 14.44 42.66 4.81
2564 2830 3.127533 GTTGCTGCAGCTACGGGG 61.128 66.667 36.61 0.00 42.66 5.73
2568 2834 2.029288 TGCTCGTTGCTGCAGCTAC 61.029 57.895 34.21 34.21 43.37 3.58
2569 2835 2.343387 TGCTCGTTGCTGCAGCTA 59.657 55.556 36.61 28.48 43.37 3.32
2573 2839 1.464608 GTTTATCTGCTCGTTGCTGCA 59.535 47.619 0.00 0.00 43.37 4.41
2574 2840 1.734465 AGTTTATCTGCTCGTTGCTGC 59.266 47.619 0.00 0.00 43.37 5.25
2575 2841 3.425359 CCAAGTTTATCTGCTCGTTGCTG 60.425 47.826 5.00 4.67 43.37 4.41
2576 2842 2.744202 CCAAGTTTATCTGCTCGTTGCT 59.256 45.455 5.00 0.00 43.37 3.91
2577 2843 2.484264 ACCAAGTTTATCTGCTCGTTGC 59.516 45.455 0.00 0.00 43.25 4.17
2578 2844 4.749245 AACCAAGTTTATCTGCTCGTTG 57.251 40.909 0.00 0.00 0.00 4.10
2579 2845 5.298276 TGAAAACCAAGTTTATCTGCTCGTT 59.702 36.000 0.00 0.00 34.43 3.85
2580 2846 4.819630 TGAAAACCAAGTTTATCTGCTCGT 59.180 37.500 0.00 0.00 34.43 4.18
2581 2847 5.356882 TGAAAACCAAGTTTATCTGCTCG 57.643 39.130 0.00 0.00 34.43 5.03
2582 2848 5.473504 TCCTGAAAACCAAGTTTATCTGCTC 59.526 40.000 0.00 0.00 34.43 4.26
2583 2849 5.385198 TCCTGAAAACCAAGTTTATCTGCT 58.615 37.500 0.00 0.00 34.43 4.24
2584 2850 5.241728 ACTCCTGAAAACCAAGTTTATCTGC 59.758 40.000 0.00 0.00 34.43 4.26
2585 2851 6.072452 GGACTCCTGAAAACCAAGTTTATCTG 60.072 42.308 0.00 0.00 34.43 2.90
2586 2852 6.004574 GGACTCCTGAAAACCAAGTTTATCT 58.995 40.000 0.00 0.00 34.43 1.98
2587 2853 6.004574 AGGACTCCTGAAAACCAAGTTTATC 58.995 40.000 0.00 0.00 30.74 1.75
2588 2854 5.953571 AGGACTCCTGAAAACCAAGTTTAT 58.046 37.500 0.00 0.00 30.74 1.40
2589 2855 5.382664 AGGACTCCTGAAAACCAAGTTTA 57.617 39.130 0.00 0.00 30.74 2.01
2590 2856 4.251103 AGGACTCCTGAAAACCAAGTTT 57.749 40.909 0.00 0.00 32.41 2.66
2591 2857 3.953542 AGGACTCCTGAAAACCAAGTT 57.046 42.857 0.00 0.00 29.57 2.66
2592 2858 3.202151 TCAAGGACTCCTGAAAACCAAGT 59.798 43.478 0.00 0.00 32.13 3.16
2593 2859 3.820557 TCAAGGACTCCTGAAAACCAAG 58.179 45.455 0.00 0.00 32.13 3.61
2594 2860 3.943671 TCAAGGACTCCTGAAAACCAA 57.056 42.857 0.00 0.00 32.13 3.67
2595 2861 3.943671 TTCAAGGACTCCTGAAAACCA 57.056 42.857 0.00 0.00 32.13 3.67
2596 2862 5.301805 TGATTTTCAAGGACTCCTGAAAACC 59.698 40.000 23.58 19.13 40.11 3.27
2597 2863 6.391227 TGATTTTCAAGGACTCCTGAAAAC 57.609 37.500 23.58 19.48 40.11 2.43
2598 2864 6.183360 GGTTGATTTTCAAGGACTCCTGAAAA 60.183 38.462 23.46 23.46 40.76 2.29
2599 2865 5.301805 GGTTGATTTTCAAGGACTCCTGAAA 59.698 40.000 14.11 14.11 37.00 2.69
2600 2866 4.827284 GGTTGATTTTCAAGGACTCCTGAA 59.173 41.667 0.00 2.46 37.00 3.02
2601 2867 4.141274 TGGTTGATTTTCAAGGACTCCTGA 60.141 41.667 0.00 0.00 37.00 3.86
2602 2868 4.144297 TGGTTGATTTTCAAGGACTCCTG 58.856 43.478 0.00 0.00 37.00 3.86
2603 2869 4.453480 TGGTTGATTTTCAAGGACTCCT 57.547 40.909 0.00 0.00 37.00 3.69
2604 2870 4.340950 TGTTGGTTGATTTTCAAGGACTCC 59.659 41.667 0.00 0.00 37.00 3.85
2605 2871 5.163561 TGTGTTGGTTGATTTTCAAGGACTC 60.164 40.000 0.00 0.00 37.00 3.36
2606 2872 4.709397 TGTGTTGGTTGATTTTCAAGGACT 59.291 37.500 0.00 0.00 37.00 3.85
2607 2873 4.803613 GTGTGTTGGTTGATTTTCAAGGAC 59.196 41.667 0.00 0.00 37.00 3.85
2608 2874 4.464244 TGTGTGTTGGTTGATTTTCAAGGA 59.536 37.500 0.00 0.00 37.00 3.36
2609 2875 4.753233 TGTGTGTTGGTTGATTTTCAAGG 58.247 39.130 0.00 0.00 37.00 3.61
2610 2876 5.649557 TCTGTGTGTTGGTTGATTTTCAAG 58.350 37.500 0.00 0.00 37.00 3.02
2611 2877 5.651387 TCTGTGTGTTGGTTGATTTTCAA 57.349 34.783 0.00 0.00 33.32 2.69
2612 2878 5.126869 ACATCTGTGTGTTGGTTGATTTTCA 59.873 36.000 0.00 0.00 37.14 2.69
2613 2879 5.591099 ACATCTGTGTGTTGGTTGATTTTC 58.409 37.500 0.00 0.00 37.14 2.29
2614 2880 5.596836 ACATCTGTGTGTTGGTTGATTTT 57.403 34.783 0.00 0.00 37.14 1.82
2660 3020 3.190874 CTCAGGTTAGGACTGCGATTTC 58.809 50.000 0.00 0.00 35.94 2.17
2924 3475 2.574018 GCAAGGTGGAAGGGTTGCC 61.574 63.158 0.00 0.00 39.52 4.52
2925 3476 2.919494 CGCAAGGTGGAAGGGTTGC 61.919 63.158 0.00 0.00 41.55 4.17
2927 3478 2.597510 GCGCAAGGTGGAAGGGTT 60.598 61.111 0.30 0.00 38.28 4.11
2954 3505 0.038618 TTGCATACGTGTCGCAGAGT 60.039 50.000 0.00 0.00 36.95 3.24
2986 3537 1.572415 TGGGACGGAGGGAGTAGTATT 59.428 52.381 0.00 0.00 0.00 1.89
2989 3540 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
2990 3541 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
2991 3542 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2992 3543 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2993 3544 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2994 3545 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2995 3546 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2996 3547 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2997 3548 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2998 3549 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2999 3550 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
3037 3588 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3038 3589 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3039 3590 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3040 3591 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3041 3592 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3042 3593 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3043 3594 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3044 3595 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3045 3596 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3046 3597 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3047 3598 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3048 3599 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3049 3600 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3050 3601 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
3051 3602 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
3052 3603 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
3053 3604 2.767960 GTTTTACTCCCTCCGTCCCATA 59.232 50.000 0.00 0.00 0.00 2.74
3054 3605 1.558294 GTTTTACTCCCTCCGTCCCAT 59.442 52.381 0.00 0.00 0.00 4.00
3055 3606 0.978907 GTTTTACTCCCTCCGTCCCA 59.021 55.000 0.00 0.00 0.00 4.37
3056 3607 1.273759 AGTTTTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
3057 3608 3.413846 AAAGTTTTACTCCCTCCGTCC 57.586 47.619 0.00 0.00 0.00 4.79
3058 3609 7.444629 AAAATAAAGTTTTACTCCCTCCGTC 57.555 36.000 0.00 0.00 0.00 4.79
3059 3610 7.828508 AAAAATAAAGTTTTACTCCCTCCGT 57.171 32.000 0.00 0.00 0.00 4.69
3103 3654 8.526147 GCCATGCCTATAAATCTGATGTTATTT 58.474 33.333 0.00 0.00 0.00 1.40
3104 3655 7.670979 TGCCATGCCTATAAATCTGATGTTATT 59.329 33.333 0.00 0.00 0.00 1.40
3105 3656 7.177184 TGCCATGCCTATAAATCTGATGTTAT 58.823 34.615 0.00 1.48 0.00 1.89
3106 3657 6.541907 TGCCATGCCTATAAATCTGATGTTA 58.458 36.000 0.00 0.00 0.00 2.41
3107 3658 5.387788 TGCCATGCCTATAAATCTGATGTT 58.612 37.500 0.00 0.00 0.00 2.71
3108 3659 4.989277 TGCCATGCCTATAAATCTGATGT 58.011 39.130 0.00 0.00 0.00 3.06
3109 3660 5.970317 TTGCCATGCCTATAAATCTGATG 57.030 39.130 0.00 0.00 0.00 3.07
3110 3661 7.549147 AATTTGCCATGCCTATAAATCTGAT 57.451 32.000 0.00 0.00 0.00 2.90
3111 3662 6.982160 AATTTGCCATGCCTATAAATCTGA 57.018 33.333 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.