Multiple sequence alignment - TraesCS4D01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G225200 chr4D 100.000 2713 0 0 886 3598 382737785 382740497 0.000000e+00 5011
1 TraesCS4D01G225200 chr4D 100.000 673 0 0 1 673 382736900 382737572 0.000000e+00 1243
2 TraesCS4D01G225200 chr4D 78.544 261 45 11 1114 1370 52763829 52764082 1.030000e-35 161
3 TraesCS4D01G225200 chr4B 94.207 2313 51 25 886 3184 470295759 470298002 0.000000e+00 3452
4 TraesCS4D01G225200 chr4B 94.084 693 10 9 1 673 470295055 470295736 0.000000e+00 1024
5 TraesCS4D01G225200 chr4B 84.211 266 38 4 1114 1377 605693084 605692821 4.610000e-64 255
6 TraesCS4D01G225200 chr4B 78.846 260 46 9 1114 1370 77651299 77651552 2.220000e-37 167
7 TraesCS4D01G225200 chr4A 93.926 2338 45 20 886 3173 64956495 64958785 0.000000e+00 3441
8 TraesCS4D01G225200 chr4A 94.136 648 12 7 32 655 64955829 64956474 0.000000e+00 963
9 TraesCS4D01G225200 chr4A 78.846 260 46 9 1114 1370 544047783 544047530 2.220000e-37 167
10 TraesCS4D01G225200 chr3D 93.447 412 25 2 3189 3598 581095638 581096049 8.540000e-171 610
11 TraesCS4D01G225200 chr5D 92.566 417 27 3 3185 3598 535902202 535901787 2.390000e-166 595
12 TraesCS4D01G225200 chr7A 92.308 416 29 2 3186 3598 437074371 437074786 4.000000e-164 588
13 TraesCS4D01G225200 chr2B 92.308 416 29 2 3186 3598 94937269 94937684 4.000000e-164 588
14 TraesCS4D01G225200 chrUn 92.271 414 30 2 3187 3598 51420752 51420339 1.440000e-163 586
15 TraesCS4D01G225200 chr2D 92.105 418 29 3 3185 3598 591268966 591268549 1.440000e-163 586
16 TraesCS4D01G225200 chr1D 92.289 415 29 3 3186 3598 11804478 11804065 1.440000e-163 586
17 TraesCS4D01G225200 chr6B 92.048 415 32 1 3185 3598 161595477 161595891 1.860000e-162 582
18 TraesCS4D01G225200 chr6B 92.252 413 28 3 3187 3598 663016103 663015694 1.860000e-162 582
19 TraesCS4D01G225200 chr6B 83.392 283 42 5 1098 1377 704751349 704751629 1.280000e-64 257
20 TraesCS4D01G225200 chr6D 84.586 266 37 4 1114 1377 462273014 462272751 9.910000e-66 261
21 TraesCS4D01G225200 chr6A 83.333 282 44 3 1098 1377 609107564 609107284 1.280000e-64 257
22 TraesCS4D01G225200 chr3A 75.887 282 54 11 1102 1377 59532230 59532503 8.110000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G225200 chr4D 382736900 382740497 3597 False 3127 5011 100.0000 1 3598 2 chr4D.!!$F2 3597
1 TraesCS4D01G225200 chr4B 470295055 470298002 2947 False 2238 3452 94.1455 1 3184 2 chr4B.!!$F2 3183
2 TraesCS4D01G225200 chr4A 64955829 64958785 2956 False 2202 3441 94.0310 32 3173 2 chr4A.!!$F1 3141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 461 0.320421 GAGCAGGGAAAGTGTGCGTA 60.320 55.000 0.00 0.0 42.26 4.42 F
436 462 0.324943 AGCAGGGAAAGTGTGCGTAT 59.675 50.000 0.00 0.0 42.26 3.06 F
2014 2066 1.077930 GGAAGTTCTAACCGCCCCC 60.078 63.158 2.25 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2169 2.095415 CCAGTCACACAACGATACTCGA 60.095 50.000 3.2 0.0 43.74 4.04 R
2108 2170 2.251040 CCAGTCACACAACGATACTCG 58.749 52.381 0.0 0.0 46.93 4.18 R
3377 3467 0.031585 TCACAACGACTTCCCGACTG 59.968 55.000 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 175 1.667510 CGTTGGGTGCAAATTGGGC 60.668 57.895 0.00 0.00 0.00 5.36
172 182 2.125952 GGTGCAAATTGGGCGAGC 60.126 61.111 0.00 0.00 0.00 5.03
201 211 2.034221 GCGGTTCCCTCTTTGGCT 59.966 61.111 0.00 0.00 0.00 4.75
202 212 2.041115 GCGGTTCCCTCTTTGGCTC 61.041 63.158 0.00 0.00 0.00 4.70
203 213 1.741770 CGGTTCCCTCTTTGGCTCG 60.742 63.158 0.00 0.00 0.00 5.03
204 214 1.677552 GGTTCCCTCTTTGGCTCGA 59.322 57.895 0.00 0.00 0.00 4.04
419 445 3.695606 TCCAGCAGTGGGACGAGC 61.696 66.667 0.00 0.00 45.11 5.03
435 461 0.320421 GAGCAGGGAAAGTGTGCGTA 60.320 55.000 0.00 0.00 42.26 4.42
436 462 0.324943 AGCAGGGAAAGTGTGCGTAT 59.675 50.000 0.00 0.00 42.26 3.06
437 463 1.553248 AGCAGGGAAAGTGTGCGTATA 59.447 47.619 0.00 0.00 42.26 1.47
438 464 2.170607 AGCAGGGAAAGTGTGCGTATAT 59.829 45.455 0.00 0.00 42.26 0.86
439 465 2.287915 GCAGGGAAAGTGTGCGTATATG 59.712 50.000 0.00 0.00 0.00 1.78
440 466 3.792401 CAGGGAAAGTGTGCGTATATGA 58.208 45.455 0.00 0.00 0.00 2.15
441 467 3.804325 CAGGGAAAGTGTGCGTATATGAG 59.196 47.826 0.00 0.00 0.00 2.90
637 676 1.152839 GACCCTCCTCTCCTCTCGG 60.153 68.421 0.00 0.00 0.00 4.63
928 967 5.770663 TCCTATAACTAGCAAGTGCCTAGAG 59.229 44.000 13.31 4.47 43.38 2.43
1089 1129 1.547755 AGGAGGAGGTGGAGGAGGA 60.548 63.158 0.00 0.00 0.00 3.71
1092 1132 2.041405 GGAGGTGGAGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
1400 1440 2.310945 ACATCCATCCATCCATCCATCC 59.689 50.000 0.00 0.00 0.00 3.51
1401 1441 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
1402 1442 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
1403 1443 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
1405 1445 3.052869 CCATCCATCCATCCATCCATCAT 60.053 47.826 0.00 0.00 0.00 2.45
1406 1446 4.167307 CCATCCATCCATCCATCCATCATA 59.833 45.833 0.00 0.00 0.00 2.15
1435 1475 2.468040 CGATCGAGTTAAATCTCCGTGC 59.532 50.000 10.26 0.00 0.00 5.34
1495 1535 4.313819 GGAAAACCCCAGTAGGCG 57.686 61.111 0.00 0.00 0.00 5.52
1496 1536 2.044555 GGAAAACCCCAGTAGGCGC 61.045 63.158 0.00 0.00 0.00 6.53
1497 1537 2.035155 AAAACCCCAGTAGGCGCC 59.965 61.111 21.89 21.89 0.00 6.53
1498 1538 2.757980 GAAAACCCCAGTAGGCGCCA 62.758 60.000 31.54 12.31 0.00 5.69
2014 2066 1.077930 GGAAGTTCTAACCGCCCCC 60.078 63.158 2.25 0.00 0.00 5.40
2095 2147 3.379372 GCATGCATGTGGTTCTATCTGTT 59.621 43.478 26.79 0.00 0.00 3.16
2096 2148 4.497006 GCATGCATGTGGTTCTATCTGTTC 60.497 45.833 26.79 1.51 0.00 3.18
2107 2169 6.942005 TGGTTCTATCTGTTCATTCATGTGTT 59.058 34.615 0.00 0.00 0.00 3.32
2108 2170 7.119699 TGGTTCTATCTGTTCATTCATGTGTTC 59.880 37.037 0.00 0.00 0.00 3.18
2177 2239 1.720805 TGTATGTGTCATGTCGTGCC 58.279 50.000 0.00 0.00 0.00 5.01
2178 2240 0.645355 GTATGTGTCATGTCGTGCCG 59.355 55.000 0.00 0.00 0.00 5.69
2240 2302 3.569210 CAGACCCACCTGGCCACA 61.569 66.667 0.00 0.00 37.83 4.17
2491 2553 3.550431 CATGGCGGAGGGATCGGT 61.550 66.667 0.00 0.00 0.00 4.69
2776 2861 2.811514 GGAGGGATGATGGCGAGCA 61.812 63.158 0.00 0.00 0.00 4.26
2777 2862 1.374190 GAGGGATGATGGCGAGCAT 59.626 57.895 0.00 0.00 0.00 3.79
2939 3028 2.029666 GATCGCTCCGTCCATGGG 59.970 66.667 13.02 0.00 0.00 4.00
3114 3204 0.588252 CGGCGATGCTTAATTCTGGG 59.412 55.000 0.00 0.00 0.00 4.45
3119 3209 4.502604 GGCGATGCTTAATTCTGGGTACTA 60.503 45.833 0.00 0.00 0.00 1.82
3120 3210 5.238583 GCGATGCTTAATTCTGGGTACTAT 58.761 41.667 0.00 0.00 0.00 2.12
3121 3211 5.348997 GCGATGCTTAATTCTGGGTACTATC 59.651 44.000 0.00 0.00 0.00 2.08
3173 3263 5.536161 TCTCTAAATTGGTTTTGCAGCTTCT 59.464 36.000 0.00 0.00 0.00 2.85
3174 3264 6.040842 TCTCTAAATTGGTTTTGCAGCTTCTT 59.959 34.615 0.00 0.00 0.00 2.52
3175 3265 6.215845 TCTAAATTGGTTTTGCAGCTTCTTC 58.784 36.000 0.00 0.00 0.00 2.87
3176 3266 4.405116 AATTGGTTTTGCAGCTTCTTCA 57.595 36.364 0.00 0.00 0.00 3.02
3177 3267 3.441496 TTGGTTTTGCAGCTTCTTCAG 57.559 42.857 0.00 0.00 0.00 3.02
3178 3268 2.653726 TGGTTTTGCAGCTTCTTCAGA 58.346 42.857 0.00 0.00 0.00 3.27
3179 3269 3.225104 TGGTTTTGCAGCTTCTTCAGAT 58.775 40.909 0.00 0.00 0.00 2.90
3181 3271 3.486584 GTTTTGCAGCTTCTTCAGATCG 58.513 45.455 0.00 0.00 0.00 3.69
3182 3272 2.749280 TTGCAGCTTCTTCAGATCGA 57.251 45.000 0.00 0.00 0.00 3.59
3183 3273 2.001812 TGCAGCTTCTTCAGATCGAC 57.998 50.000 0.00 0.00 0.00 4.20
3184 3274 1.273327 TGCAGCTTCTTCAGATCGACA 59.727 47.619 0.00 0.00 0.00 4.35
3185 3275 2.093816 TGCAGCTTCTTCAGATCGACAT 60.094 45.455 0.00 0.00 0.00 3.06
3186 3276 2.935201 GCAGCTTCTTCAGATCGACATT 59.065 45.455 0.00 0.00 0.00 2.71
3187 3277 3.373439 GCAGCTTCTTCAGATCGACATTT 59.627 43.478 0.00 0.00 0.00 2.32
3188 3278 4.142730 GCAGCTTCTTCAGATCGACATTTT 60.143 41.667 0.00 0.00 0.00 1.82
3189 3279 5.618640 GCAGCTTCTTCAGATCGACATTTTT 60.619 40.000 0.00 0.00 0.00 1.94
3240 3330 9.889128 TTCATCTTCAATCATGATAGTACAACA 57.111 29.630 9.04 0.00 34.96 3.33
3241 3331 9.889128 TCATCTTCAATCATGATAGTACAACAA 57.111 29.630 9.04 0.00 34.96 2.83
3244 3334 9.500785 TCTTCAATCATGATAGTACAACAAACA 57.499 29.630 9.04 0.00 34.96 2.83
3245 3335 9.546909 CTTCAATCATGATAGTACAACAAACAC 57.453 33.333 9.04 0.00 34.96 3.32
3246 3336 8.846943 TCAATCATGATAGTACAACAAACACT 57.153 30.769 9.04 0.00 0.00 3.55
3247 3337 9.936759 TCAATCATGATAGTACAACAAACACTA 57.063 29.630 9.04 0.00 0.00 2.74
3276 3366 9.847224 AATAATAAAAGTTACATCCAGATCCGT 57.153 29.630 0.00 0.00 0.00 4.69
3278 3368 8.888579 AATAAAAGTTACATCCAGATCCGTAG 57.111 34.615 0.00 0.00 0.00 3.51
3279 3369 6.540438 AAAAGTTACATCCAGATCCGTAGA 57.460 37.500 0.00 0.00 0.00 2.59
3280 3370 5.517322 AAGTTACATCCAGATCCGTAGAC 57.483 43.478 0.00 0.00 0.00 2.59
3281 3371 3.890147 AGTTACATCCAGATCCGTAGACC 59.110 47.826 0.00 0.00 0.00 3.85
3282 3372 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
3283 3373 2.964209 ACATCCAGATCCGTAGACCAT 58.036 47.619 0.00 0.00 0.00 3.55
3284 3374 2.894126 ACATCCAGATCCGTAGACCATC 59.106 50.000 0.00 0.00 0.00 3.51
3285 3375 3.161067 CATCCAGATCCGTAGACCATCT 58.839 50.000 0.00 0.00 0.00 2.90
3286 3376 4.202577 ACATCCAGATCCGTAGACCATCTA 60.203 45.833 0.00 0.00 0.00 1.98
3287 3377 4.022413 TCCAGATCCGTAGACCATCTAG 57.978 50.000 0.00 0.00 28.01 2.43
3288 3378 2.490115 CCAGATCCGTAGACCATCTAGC 59.510 54.545 0.00 0.00 28.01 3.42
3289 3379 3.149981 CAGATCCGTAGACCATCTAGCA 58.850 50.000 0.00 0.00 28.01 3.49
3290 3380 3.570125 CAGATCCGTAGACCATCTAGCAA 59.430 47.826 0.00 0.00 28.01 3.91
3291 3381 4.219507 CAGATCCGTAGACCATCTAGCAAT 59.780 45.833 0.00 0.00 28.01 3.56
3292 3382 4.219507 AGATCCGTAGACCATCTAGCAATG 59.780 45.833 0.00 0.00 28.01 2.82
3293 3383 2.035961 TCCGTAGACCATCTAGCAATGC 59.964 50.000 0.00 0.00 28.01 3.56
3294 3384 2.408050 CGTAGACCATCTAGCAATGCC 58.592 52.381 0.00 0.00 28.01 4.40
3295 3385 2.036475 CGTAGACCATCTAGCAATGCCT 59.964 50.000 0.00 0.00 28.01 4.75
3296 3386 3.255888 CGTAGACCATCTAGCAATGCCTA 59.744 47.826 0.00 0.00 28.01 3.93
3297 3387 3.760580 AGACCATCTAGCAATGCCTAC 57.239 47.619 0.00 0.00 0.00 3.18
3298 3388 3.041211 AGACCATCTAGCAATGCCTACA 58.959 45.455 0.00 0.00 0.00 2.74
3299 3389 3.455910 AGACCATCTAGCAATGCCTACAA 59.544 43.478 0.00 0.00 0.00 2.41
3300 3390 3.812053 GACCATCTAGCAATGCCTACAAG 59.188 47.826 0.00 0.00 0.00 3.16
3301 3391 2.551459 CCATCTAGCAATGCCTACAAGC 59.449 50.000 0.00 0.00 0.00 4.01
3309 3399 2.932663 TGCCTACAAGCACTGAAGC 58.067 52.632 0.00 0.00 38.00 3.86
3310 3400 0.950555 TGCCTACAAGCACTGAAGCG 60.951 55.000 0.00 0.00 38.00 4.68
3311 3401 0.670546 GCCTACAAGCACTGAAGCGA 60.671 55.000 0.00 0.00 40.15 4.93
3312 3402 1.354040 CCTACAAGCACTGAAGCGAG 58.646 55.000 0.00 0.00 40.15 5.03
3313 3403 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
3314 3404 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
3315 3405 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
3316 3406 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
3317 3407 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
3318 3408 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
3341 3431 4.899239 CCGCTGTCATCGCCCCTC 62.899 72.222 0.00 0.00 0.00 4.30
3342 3432 4.899239 CGCTGTCATCGCCCCTCC 62.899 72.222 0.00 0.00 0.00 4.30
3343 3433 4.554036 GCTGTCATCGCCCCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
3344 3434 2.765807 CTGTCATCGCCCCTCCCT 60.766 66.667 0.00 0.00 0.00 4.20
3345 3435 2.764128 TGTCATCGCCCCTCCCTC 60.764 66.667 0.00 0.00 0.00 4.30
3346 3436 3.917760 GTCATCGCCCCTCCCTCG 61.918 72.222 0.00 0.00 0.00 4.63
3377 3467 4.744136 GGCAAACCTTGTTGTAGTAGAC 57.256 45.455 0.00 0.00 0.00 2.59
3378 3468 4.131596 GGCAAACCTTGTTGTAGTAGACA 58.868 43.478 0.00 0.00 35.78 3.41
3379 3469 4.213482 GGCAAACCTTGTTGTAGTAGACAG 59.787 45.833 0.00 0.00 39.88 3.51
3380 3470 4.814771 GCAAACCTTGTTGTAGTAGACAGT 59.185 41.667 0.00 0.00 39.88 3.55
3381 3471 5.050295 GCAAACCTTGTTGTAGTAGACAGTC 60.050 44.000 0.00 0.00 39.88 3.51
3382 3472 4.500603 ACCTTGTTGTAGTAGACAGTCG 57.499 45.455 0.00 0.00 39.88 4.18
3383 3473 3.255149 ACCTTGTTGTAGTAGACAGTCGG 59.745 47.826 0.00 0.00 39.88 4.79
3384 3474 3.367087 CCTTGTTGTAGTAGACAGTCGGG 60.367 52.174 0.00 0.00 39.88 5.14
3385 3475 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
3386 3476 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
3387 3477 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
3388 3478 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
3389 3479 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
3390 3480 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
3391 3481 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
3392 3482 1.538950 GTAGACAGTCGGGAAGTCGTT 59.461 52.381 0.00 0.00 37.36 3.85
3393 3483 0.314302 AGACAGTCGGGAAGTCGTTG 59.686 55.000 0.00 0.00 37.36 4.10
3394 3484 0.031721 GACAGTCGGGAAGTCGTTGT 59.968 55.000 0.00 0.00 34.12 3.32
3395 3485 0.249322 ACAGTCGGGAAGTCGTTGTG 60.249 55.000 0.00 0.00 31.87 3.33
3396 3486 0.031585 CAGTCGGGAAGTCGTTGTGA 59.968 55.000 0.00 0.00 0.00 3.58
3397 3487 0.966920 AGTCGGGAAGTCGTTGTGAT 59.033 50.000 0.00 0.00 0.00 3.06
3398 3488 2.094906 CAGTCGGGAAGTCGTTGTGATA 60.095 50.000 0.00 0.00 0.00 2.15
3399 3489 2.559668 AGTCGGGAAGTCGTTGTGATAA 59.440 45.455 0.00 0.00 0.00 1.75
3400 3490 3.006110 AGTCGGGAAGTCGTTGTGATAAA 59.994 43.478 0.00 0.00 0.00 1.40
3401 3491 3.367025 GTCGGGAAGTCGTTGTGATAAAG 59.633 47.826 0.00 0.00 0.00 1.85
3402 3492 2.093783 CGGGAAGTCGTTGTGATAAAGC 59.906 50.000 0.00 0.00 0.00 3.51
3403 3493 2.418976 GGGAAGTCGTTGTGATAAAGCC 59.581 50.000 0.00 0.00 0.00 4.35
3404 3494 2.418976 GGAAGTCGTTGTGATAAAGCCC 59.581 50.000 0.00 0.00 0.00 5.19
3405 3495 2.109425 AGTCGTTGTGATAAAGCCCC 57.891 50.000 0.00 0.00 0.00 5.80
3406 3496 0.725117 GTCGTTGTGATAAAGCCCCG 59.275 55.000 0.00 0.00 0.00 5.73
3407 3497 0.322322 TCGTTGTGATAAAGCCCCGT 59.678 50.000 0.00 0.00 0.00 5.28
3408 3498 1.549620 TCGTTGTGATAAAGCCCCGTA 59.450 47.619 0.00 0.00 0.00 4.02
3409 3499 1.931172 CGTTGTGATAAAGCCCCGTAG 59.069 52.381 0.00 0.00 0.00 3.51
3410 3500 2.417651 CGTTGTGATAAAGCCCCGTAGA 60.418 50.000 0.00 0.00 0.00 2.59
3411 3501 3.602483 GTTGTGATAAAGCCCCGTAGAA 58.398 45.455 0.00 0.00 0.00 2.10
3412 3502 3.255969 TGTGATAAAGCCCCGTAGAAC 57.744 47.619 0.00 0.00 0.00 3.01
3413 3503 2.093341 TGTGATAAAGCCCCGTAGAACC 60.093 50.000 0.00 0.00 0.00 3.62
3414 3504 2.093341 GTGATAAAGCCCCGTAGAACCA 60.093 50.000 0.00 0.00 0.00 3.67
3415 3505 2.572556 TGATAAAGCCCCGTAGAACCAA 59.427 45.455 0.00 0.00 0.00 3.67
3416 3506 2.477845 TAAAGCCCCGTAGAACCAAC 57.522 50.000 0.00 0.00 0.00 3.77
3417 3507 0.604511 AAAGCCCCGTAGAACCAACG 60.605 55.000 0.00 0.00 40.01 4.10
3418 3508 3.122971 GCCCCGTAGAACCAACGC 61.123 66.667 0.00 0.00 39.00 4.84
3419 3509 2.344500 CCCCGTAGAACCAACGCA 59.656 61.111 0.00 0.00 39.00 5.24
3420 3510 2.030958 CCCCGTAGAACCAACGCAC 61.031 63.158 0.00 0.00 39.00 5.34
3421 3511 2.030958 CCCGTAGAACCAACGCACC 61.031 63.158 0.00 0.00 39.00 5.01
3422 3512 1.301087 CCGTAGAACCAACGCACCA 60.301 57.895 0.00 0.00 39.00 4.17
3423 3513 1.289109 CCGTAGAACCAACGCACCAG 61.289 60.000 0.00 0.00 39.00 4.00
3424 3514 0.319211 CGTAGAACCAACGCACCAGA 60.319 55.000 0.00 0.00 33.04 3.86
3425 3515 1.870580 CGTAGAACCAACGCACCAGAA 60.871 52.381 0.00 0.00 33.04 3.02
3426 3516 1.529865 GTAGAACCAACGCACCAGAAC 59.470 52.381 0.00 0.00 0.00 3.01
3427 3517 0.107410 AGAACCAACGCACCAGAACA 60.107 50.000 0.00 0.00 0.00 3.18
3428 3518 0.307760 GAACCAACGCACCAGAACAG 59.692 55.000 0.00 0.00 0.00 3.16
3429 3519 0.107410 AACCAACGCACCAGAACAGA 60.107 50.000 0.00 0.00 0.00 3.41
3430 3520 0.107410 ACCAACGCACCAGAACAGAA 60.107 50.000 0.00 0.00 0.00 3.02
3431 3521 1.021202 CCAACGCACCAGAACAGAAA 58.979 50.000 0.00 0.00 0.00 2.52
3432 3522 1.268539 CCAACGCACCAGAACAGAAAC 60.269 52.381 0.00 0.00 0.00 2.78
3433 3523 1.021968 AACGCACCAGAACAGAAACC 58.978 50.000 0.00 0.00 0.00 3.27
3434 3524 1.157870 ACGCACCAGAACAGAAACCG 61.158 55.000 0.00 0.00 0.00 4.44
3435 3525 1.282875 GCACCAGAACAGAAACCGC 59.717 57.895 0.00 0.00 0.00 5.68
3436 3526 1.949257 CACCAGAACAGAAACCGCC 59.051 57.895 0.00 0.00 0.00 6.13
3437 3527 1.597027 ACCAGAACAGAAACCGCCG 60.597 57.895 0.00 0.00 0.00 6.46
3438 3528 2.556287 CAGAACAGAAACCGCCGC 59.444 61.111 0.00 0.00 0.00 6.53
3439 3529 3.041940 AGAACAGAAACCGCCGCG 61.042 61.111 5.59 5.59 0.00 6.46
3450 3540 3.257561 CGCCGCGGATGAAGAGTG 61.258 66.667 33.48 0.68 0.00 3.51
3451 3541 2.125512 GCCGCGGATGAAGAGTGT 60.126 61.111 33.48 0.00 0.00 3.55
3452 3542 1.141019 GCCGCGGATGAAGAGTGTA 59.859 57.895 33.48 0.00 0.00 2.90
3453 3543 0.872021 GCCGCGGATGAAGAGTGTAG 60.872 60.000 33.48 0.00 0.00 2.74
3454 3544 0.738975 CCGCGGATGAAGAGTGTAGA 59.261 55.000 24.07 0.00 0.00 2.59
3455 3545 1.338337 CCGCGGATGAAGAGTGTAGAT 59.662 52.381 24.07 0.00 0.00 1.98
3456 3546 2.605823 CCGCGGATGAAGAGTGTAGATC 60.606 54.545 24.07 0.00 0.00 2.75
3457 3547 2.033424 CGCGGATGAAGAGTGTAGATCA 59.967 50.000 0.00 0.00 0.00 2.92
3458 3548 3.489229 CGCGGATGAAGAGTGTAGATCAA 60.489 47.826 0.00 0.00 0.00 2.57
3459 3549 4.433615 GCGGATGAAGAGTGTAGATCAAA 58.566 43.478 0.00 0.00 0.00 2.69
3460 3550 4.870426 GCGGATGAAGAGTGTAGATCAAAA 59.130 41.667 0.00 0.00 0.00 2.44
3461 3551 5.006165 GCGGATGAAGAGTGTAGATCAAAAG 59.994 44.000 0.00 0.00 0.00 2.27
3462 3552 5.521735 CGGATGAAGAGTGTAGATCAAAAGG 59.478 44.000 0.00 0.00 0.00 3.11
3463 3553 6.628175 CGGATGAAGAGTGTAGATCAAAAGGA 60.628 42.308 0.00 0.00 0.00 3.36
3464 3554 7.278875 GGATGAAGAGTGTAGATCAAAAGGAT 58.721 38.462 0.00 0.00 39.53 3.24
3480 3570 9.753674 ATCAAAAGGATCTAACCTGAAAATACA 57.246 29.630 0.00 0.00 40.49 2.29
3481 3571 9.010029 TCAAAAGGATCTAACCTGAAAATACAC 57.990 33.333 0.00 0.00 40.49 2.90
3482 3572 7.611213 AAAGGATCTAACCTGAAAATACACG 57.389 36.000 0.00 0.00 40.49 4.49
3483 3573 6.540438 AGGATCTAACCTGAAAATACACGA 57.460 37.500 0.00 0.00 39.01 4.35
3484 3574 6.942976 AGGATCTAACCTGAAAATACACGAA 58.057 36.000 0.00 0.00 39.01 3.85
3485 3575 6.817140 AGGATCTAACCTGAAAATACACGAAC 59.183 38.462 0.00 0.00 39.01 3.95
3486 3576 6.592607 GGATCTAACCTGAAAATACACGAACA 59.407 38.462 0.00 0.00 0.00 3.18
3487 3577 7.118680 GGATCTAACCTGAAAATACACGAACAA 59.881 37.037 0.00 0.00 0.00 2.83
3488 3578 7.789273 TCTAACCTGAAAATACACGAACAAA 57.211 32.000 0.00 0.00 0.00 2.83
3489 3579 7.857569 TCTAACCTGAAAATACACGAACAAAG 58.142 34.615 0.00 0.00 0.00 2.77
3490 3580 6.687081 AACCTGAAAATACACGAACAAAGA 57.313 33.333 0.00 0.00 0.00 2.52
3491 3581 6.056428 ACCTGAAAATACACGAACAAAGAC 57.944 37.500 0.00 0.00 0.00 3.01
3492 3582 5.137403 CCTGAAAATACACGAACAAAGACG 58.863 41.667 0.00 0.00 0.00 4.18
3493 3583 5.050634 CCTGAAAATACACGAACAAAGACGA 60.051 40.000 0.00 0.00 0.00 4.20
3494 3584 6.347270 TGAAAATACACGAACAAAGACGAA 57.653 33.333 0.00 0.00 0.00 3.85
3495 3585 6.186785 TGAAAATACACGAACAAAGACGAAC 58.813 36.000 0.00 0.00 0.00 3.95
3496 3586 4.364817 AATACACGAACAAAGACGAACG 57.635 40.909 0.00 0.00 0.00 3.95
3497 3587 1.912001 ACACGAACAAAGACGAACGA 58.088 45.000 0.14 0.00 0.00 3.85
3498 3588 1.585214 ACACGAACAAAGACGAACGAC 59.415 47.619 0.14 0.00 0.00 4.34
3500 3590 1.114842 CGAACAAAGACGAACGACGA 58.885 50.000 0.00 0.00 45.77 4.20
3501 3591 1.513994 CGAACAAAGACGAACGACGAA 59.486 47.619 0.00 0.00 45.77 3.85
3502 3592 2.652181 CGAACAAAGACGAACGACGAAC 60.652 50.000 0.00 0.00 45.77 3.95
3503 3593 1.912001 ACAAAGACGAACGACGAACA 58.088 45.000 0.00 0.00 45.77 3.18
3504 3594 1.850441 ACAAAGACGAACGACGAACAG 59.150 47.619 0.00 0.00 45.77 3.16
3505 3595 2.114056 CAAAGACGAACGACGAACAGA 58.886 47.619 0.00 0.00 45.77 3.41
3506 3596 2.701073 AAGACGAACGACGAACAGAT 57.299 45.000 0.00 0.00 45.77 2.90
3507 3597 2.244281 AGACGAACGACGAACAGATC 57.756 50.000 0.00 0.00 45.77 2.75
3508 3598 1.135746 AGACGAACGACGAACAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
3509 3599 0.453950 ACGAACGACGAACAGATCCG 60.454 55.000 0.00 0.00 45.77 4.18
3510 3600 0.179207 CGAACGACGAACAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
3511 3601 1.536149 GAACGACGAACAGATCCGAG 58.464 55.000 0.00 0.00 0.00 4.63
3512 3602 0.456312 AACGACGAACAGATCCGAGC 60.456 55.000 0.00 0.00 0.00 5.03
3513 3603 1.136774 CGACGAACAGATCCGAGCA 59.863 57.895 0.00 0.00 0.00 4.26
3514 3604 0.456142 CGACGAACAGATCCGAGCAA 60.456 55.000 0.00 0.00 0.00 3.91
3515 3605 1.710013 GACGAACAGATCCGAGCAAA 58.290 50.000 0.00 0.00 0.00 3.68
3516 3606 2.271800 GACGAACAGATCCGAGCAAAT 58.728 47.619 0.00 0.00 0.00 2.32
3517 3607 2.271800 ACGAACAGATCCGAGCAAATC 58.728 47.619 0.00 0.00 0.00 2.17
3518 3608 1.594862 CGAACAGATCCGAGCAAATCC 59.405 52.381 0.00 0.00 0.00 3.01
3519 3609 2.632377 GAACAGATCCGAGCAAATCCA 58.368 47.619 0.00 0.00 0.00 3.41
3520 3610 2.029838 ACAGATCCGAGCAAATCCAC 57.970 50.000 0.00 0.00 0.00 4.02
3521 3611 0.933097 CAGATCCGAGCAAATCCACG 59.067 55.000 0.00 0.00 0.00 4.94
3522 3612 0.824109 AGATCCGAGCAAATCCACGA 59.176 50.000 0.00 0.00 0.00 4.35
3523 3613 1.207089 AGATCCGAGCAAATCCACGAA 59.793 47.619 0.00 0.00 0.00 3.85
3524 3614 2.006888 GATCCGAGCAAATCCACGAAA 58.993 47.619 0.00 0.00 0.00 3.46
3525 3615 1.438651 TCCGAGCAAATCCACGAAAG 58.561 50.000 0.00 0.00 0.00 2.62
3526 3616 0.447801 CCGAGCAAATCCACGAAAGG 59.552 55.000 0.00 0.00 0.00 3.11
3527 3617 0.179189 CGAGCAAATCCACGAAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
3528 3618 0.881118 GAGCAAATCCACGAAAGGCA 59.119 50.000 0.00 0.00 0.00 4.75
3529 3619 0.883833 AGCAAATCCACGAAAGGCAG 59.116 50.000 0.00 0.00 0.00 4.85
3530 3620 0.881118 GCAAATCCACGAAAGGCAGA 59.119 50.000 0.00 0.00 0.00 4.26
3531 3621 1.474077 GCAAATCCACGAAAGGCAGAT 59.526 47.619 0.00 0.00 0.00 2.90
3532 3622 2.478539 GCAAATCCACGAAAGGCAGATC 60.479 50.000 0.00 0.00 0.00 2.75
3533 3623 2.044123 AATCCACGAAAGGCAGATCC 57.956 50.000 0.00 0.00 0.00 3.36
3534 3624 0.179073 ATCCACGAAAGGCAGATCCG 60.179 55.000 0.00 0.00 40.77 4.18
3535 3625 2.464459 CCACGAAAGGCAGATCCGC 61.464 63.158 0.00 0.00 40.77 5.54
3551 3641 4.980805 GCCGGCGACACAACTCCA 62.981 66.667 12.58 0.00 0.00 3.86
3552 3642 3.041940 CCGGCGACACAACTCCAC 61.042 66.667 9.30 0.00 0.00 4.02
3553 3643 2.279851 CGGCGACACAACTCCACA 60.280 61.111 0.00 0.00 0.00 4.17
3554 3644 2.594962 CGGCGACACAACTCCACAC 61.595 63.158 0.00 0.00 0.00 3.82
3555 3645 2.594962 GGCGACACAACTCCACACG 61.595 63.158 0.00 0.00 0.00 4.49
3556 3646 2.928361 CGACACAACTCCACACGC 59.072 61.111 0.00 0.00 0.00 5.34
3557 3647 2.594962 CGACACAACTCCACACGCC 61.595 63.158 0.00 0.00 0.00 5.68
3558 3648 2.203153 ACACAACTCCACACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
3559 3649 2.203139 CACAACTCCACACGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
3560 3650 2.203153 ACAACTCCACACGCCCAC 60.203 61.111 0.00 0.00 0.00 4.61
3561 3651 2.978010 CAACTCCACACGCCCACC 60.978 66.667 0.00 0.00 0.00 4.61
3562 3652 4.619227 AACTCCACACGCCCACCG 62.619 66.667 0.00 0.00 44.21 4.94
3567 3657 4.735132 CACACGCCCACCGACGAT 62.735 66.667 0.00 0.00 41.02 3.73
3568 3658 4.735132 ACACGCCCACCGACGATG 62.735 66.667 0.00 0.00 41.02 3.84
3572 3662 3.499737 GCCCACCGACGATGCAAG 61.500 66.667 0.00 0.00 0.00 4.01
3573 3663 2.264480 CCCACCGACGATGCAAGA 59.736 61.111 0.00 0.00 0.00 3.02
3574 3664 2.100631 CCCACCGACGATGCAAGAC 61.101 63.158 0.00 0.00 0.00 3.01
3575 3665 2.444624 CCACCGACGATGCAAGACG 61.445 63.158 0.00 9.57 0.00 4.18
3576 3666 2.809601 ACCGACGATGCAAGACGC 60.810 61.111 10.69 4.60 42.89 5.19
3585 3675 3.561429 GCAAGACGCATCACCGAA 58.439 55.556 0.00 0.00 41.79 4.30
3586 3676 1.866237 GCAAGACGCATCACCGAAA 59.134 52.632 0.00 0.00 41.79 3.46
3587 3677 0.452784 GCAAGACGCATCACCGAAAC 60.453 55.000 0.00 0.00 41.79 2.78
3588 3678 0.179250 CAAGACGCATCACCGAAACG 60.179 55.000 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 182 4.619227 AACCGCACCACAGTCCCG 62.619 66.667 0.00 0.00 0.00 5.14
201 211 2.592001 CGAGAGAGGGGCGATCGA 60.592 66.667 21.57 0.00 35.47 3.59
202 212 4.335584 GCGAGAGAGGGGCGATCG 62.336 72.222 11.69 11.69 36.51 3.69
203 213 1.244697 TATGCGAGAGAGGGGCGATC 61.245 60.000 0.00 0.00 0.00 3.69
204 214 1.228583 TATGCGAGAGAGGGGCGAT 60.229 57.895 0.00 0.00 0.00 4.58
419 445 3.792401 TCATATACGCACACTTTCCCTG 58.208 45.455 0.00 0.00 0.00 4.45
436 462 9.863650 TCTCTCATGCATATCTCATATCTCATA 57.136 33.333 0.00 0.00 0.00 2.15
437 463 8.770010 TCTCTCATGCATATCTCATATCTCAT 57.230 34.615 0.00 0.00 0.00 2.90
438 464 8.053963 TCTCTCTCATGCATATCTCATATCTCA 58.946 37.037 0.00 0.00 0.00 3.27
439 465 8.454570 TCTCTCTCATGCATATCTCATATCTC 57.545 38.462 0.00 0.00 0.00 2.75
440 466 8.826293 TTCTCTCTCATGCATATCTCATATCT 57.174 34.615 0.00 0.00 0.00 1.98
441 467 9.304731 GTTTCTCTCTCATGCATATCTCATATC 57.695 37.037 0.00 0.00 0.00 1.63
928 967 1.280421 CCCCTTATATCTGCTGCTCCC 59.720 57.143 0.00 0.00 0.00 4.30
1074 1114 2.641746 CCCTCCTCCTCCACCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
1080 1120 2.285668 CCAAGCCCTCCTCCTCCA 60.286 66.667 0.00 0.00 0.00 3.86
1400 1440 3.057245 ACTCGATCGATGGGTGTATGATG 60.057 47.826 19.78 4.43 0.00 3.07
1401 1441 3.157881 ACTCGATCGATGGGTGTATGAT 58.842 45.455 19.78 0.00 0.00 2.45
1402 1442 2.583143 ACTCGATCGATGGGTGTATGA 58.417 47.619 19.78 0.00 0.00 2.15
1403 1443 3.371102 AACTCGATCGATGGGTGTATG 57.629 47.619 19.78 5.96 0.00 2.39
1405 1445 4.987408 TTTAACTCGATCGATGGGTGTA 57.013 40.909 19.78 6.13 0.00 2.90
1406 1446 3.880047 TTTAACTCGATCGATGGGTGT 57.120 42.857 19.78 9.78 0.00 4.16
1497 1537 4.771356 GTGCTGTGCATGGCGCTG 62.771 66.667 7.64 0.00 41.91 5.18
1822 1862 3.781307 CGATCTGCGGGTGGGGAA 61.781 66.667 0.00 0.00 36.03 3.97
1824 1864 3.151710 TACGATCTGCGGGTGGGG 61.152 66.667 0.00 0.00 46.49 4.96
2014 2066 8.348507 AGATTTGCACTAGAAACAAAAGAGAAG 58.651 33.333 0.00 0.00 36.90 2.85
2095 2147 4.993905 ACGATACTCGAACACATGAATGA 58.006 39.130 0.00 0.00 43.74 2.57
2096 2148 5.062183 ACAACGATACTCGAACACATGAATG 59.938 40.000 0.00 0.00 43.74 2.67
2107 2169 2.095415 CCAGTCACACAACGATACTCGA 60.095 50.000 3.20 0.00 43.74 4.04
2108 2170 2.251040 CCAGTCACACAACGATACTCG 58.749 52.381 0.00 0.00 46.93 4.18
2177 2239 4.047125 ACCACCTGGGGAATGGCG 62.047 66.667 0.00 0.00 42.91 5.69
2178 2240 2.362889 CACCACCTGGGGAATGGC 60.363 66.667 0.00 0.00 42.67 4.40
2657 2742 0.737715 ACTCGATCTCTTTGCACGGC 60.738 55.000 0.00 0.00 0.00 5.68
2776 2861 1.760192 ACCTACTCGAACCACGCTAT 58.240 50.000 0.00 0.00 42.26 2.97
2777 2862 2.093500 TCTACCTACTCGAACCACGCTA 60.093 50.000 0.00 0.00 42.26 4.26
2939 3028 1.091771 TGACTACGGACCCGATCGAC 61.092 60.000 18.66 7.50 42.83 4.20
3114 3204 2.530700 GTCGAAACAGCTGCGATAGTAC 59.469 50.000 15.27 0.00 36.37 2.73
3119 3209 2.730672 GCGTCGAAACAGCTGCGAT 61.731 57.895 15.27 0.00 36.37 4.58
3120 3210 3.403057 GCGTCGAAACAGCTGCGA 61.403 61.111 15.27 12.41 0.00 5.10
3121 3211 2.498761 AATGCGTCGAAACAGCTGCG 62.499 55.000 15.27 9.93 0.00 5.18
3214 3304 9.889128 TGTTGTACTATCATGATTGAAGATGAA 57.111 29.630 21.64 4.00 34.96 2.57
3215 3305 9.889128 TTGTTGTACTATCATGATTGAAGATGA 57.111 29.630 21.64 0.00 34.96 2.92
3218 3308 9.500785 TGTTTGTTGTACTATCATGATTGAAGA 57.499 29.630 21.64 3.97 34.96 2.87
3219 3309 9.546909 GTGTTTGTTGTACTATCATGATTGAAG 57.453 33.333 21.64 12.40 34.96 3.02
3220 3310 9.283768 AGTGTTTGTTGTACTATCATGATTGAA 57.716 29.630 21.64 5.14 34.96 2.69
3221 3311 8.846943 AGTGTTTGTTGTACTATCATGATTGA 57.153 30.769 21.64 1.13 36.00 2.57
3250 3340 9.847224 ACGGATCTGGATGTAACTTTTATTATT 57.153 29.630 6.47 0.00 0.00 1.40
3252 3342 9.976511 CTACGGATCTGGATGTAACTTTTATTA 57.023 33.333 6.47 0.00 0.00 0.98
3253 3343 8.701895 TCTACGGATCTGGATGTAACTTTTATT 58.298 33.333 6.47 0.00 0.00 1.40
3254 3344 8.142551 GTCTACGGATCTGGATGTAACTTTTAT 58.857 37.037 6.47 0.00 0.00 1.40
3255 3345 7.417116 GGTCTACGGATCTGGATGTAACTTTTA 60.417 40.741 6.47 0.00 0.00 1.52
3256 3346 6.338937 GTCTACGGATCTGGATGTAACTTTT 58.661 40.000 6.47 0.00 0.00 2.27
3257 3347 5.163437 GGTCTACGGATCTGGATGTAACTTT 60.163 44.000 6.47 0.00 0.00 2.66
3258 3348 4.341520 GGTCTACGGATCTGGATGTAACTT 59.658 45.833 6.47 0.00 0.00 2.66
3259 3349 3.890147 GGTCTACGGATCTGGATGTAACT 59.110 47.826 6.47 0.00 0.00 2.24
3260 3350 3.635373 TGGTCTACGGATCTGGATGTAAC 59.365 47.826 6.47 0.00 0.00 2.50
3261 3351 3.905968 TGGTCTACGGATCTGGATGTAA 58.094 45.455 6.47 0.00 0.00 2.41
3262 3352 3.588210 TGGTCTACGGATCTGGATGTA 57.412 47.619 6.47 0.00 0.00 2.29
3263 3353 2.454336 TGGTCTACGGATCTGGATGT 57.546 50.000 6.47 0.00 0.00 3.06
3264 3354 3.161067 AGATGGTCTACGGATCTGGATG 58.839 50.000 6.47 0.00 0.00 3.51
3265 3355 3.534357 AGATGGTCTACGGATCTGGAT 57.466 47.619 6.47 0.00 0.00 3.41
3266 3356 3.811098 GCTAGATGGTCTACGGATCTGGA 60.811 52.174 6.47 0.00 28.72 3.86
3267 3357 2.490115 GCTAGATGGTCTACGGATCTGG 59.510 54.545 6.47 0.00 0.00 3.86
3268 3358 3.149981 TGCTAGATGGTCTACGGATCTG 58.850 50.000 0.00 0.00 0.00 2.90
3269 3359 3.510531 TGCTAGATGGTCTACGGATCT 57.489 47.619 0.00 0.00 0.00 2.75
3270 3360 4.489810 CATTGCTAGATGGTCTACGGATC 58.510 47.826 0.00 0.00 0.00 3.36
3271 3361 3.306364 GCATTGCTAGATGGTCTACGGAT 60.306 47.826 0.16 0.00 0.00 4.18
3272 3362 2.035961 GCATTGCTAGATGGTCTACGGA 59.964 50.000 0.16 0.00 0.00 4.69
3273 3363 2.408050 GCATTGCTAGATGGTCTACGG 58.592 52.381 0.16 0.00 0.00 4.02
3274 3364 2.036475 AGGCATTGCTAGATGGTCTACG 59.964 50.000 8.82 0.00 0.00 3.51
3275 3365 3.760580 AGGCATTGCTAGATGGTCTAC 57.239 47.619 8.82 0.00 0.00 2.59
3276 3366 4.223144 TGTAGGCATTGCTAGATGGTCTA 58.777 43.478 8.82 0.00 0.00 2.59
3277 3367 3.041211 TGTAGGCATTGCTAGATGGTCT 58.959 45.455 8.82 0.00 0.00 3.85
3278 3368 3.475566 TGTAGGCATTGCTAGATGGTC 57.524 47.619 8.82 0.00 0.00 4.02
3279 3369 3.813443 CTTGTAGGCATTGCTAGATGGT 58.187 45.455 8.82 0.00 0.00 3.55
3280 3370 2.551459 GCTTGTAGGCATTGCTAGATGG 59.449 50.000 8.82 0.00 0.00 3.51
3281 3371 3.003068 GTGCTTGTAGGCATTGCTAGATG 59.997 47.826 8.82 0.00 44.34 2.90
3282 3372 3.118112 AGTGCTTGTAGGCATTGCTAGAT 60.118 43.478 8.82 0.00 44.34 1.98
3283 3373 2.237143 AGTGCTTGTAGGCATTGCTAGA 59.763 45.455 8.82 0.00 44.34 2.43
3284 3374 2.353889 CAGTGCTTGTAGGCATTGCTAG 59.646 50.000 8.82 0.59 44.34 3.42
3285 3375 2.027285 TCAGTGCTTGTAGGCATTGCTA 60.027 45.455 8.82 0.00 45.37 3.49
3286 3376 1.171308 CAGTGCTTGTAGGCATTGCT 58.829 50.000 8.82 0.00 44.34 3.91
3287 3377 1.167851 TCAGTGCTTGTAGGCATTGC 58.832 50.000 0.00 0.00 45.37 3.56
3288 3378 2.415090 GCTTCAGTGCTTGTAGGCATTG 60.415 50.000 5.34 5.34 46.52 2.82
3289 3379 1.815003 GCTTCAGTGCTTGTAGGCATT 59.185 47.619 0.00 0.00 44.34 3.56
3290 3380 1.457346 GCTTCAGTGCTTGTAGGCAT 58.543 50.000 0.00 0.00 44.34 4.40
3291 3381 0.950555 CGCTTCAGTGCTTGTAGGCA 60.951 55.000 0.00 0.00 40.15 4.75
3292 3382 0.670546 TCGCTTCAGTGCTTGTAGGC 60.671 55.000 0.00 0.00 0.00 3.93
3293 3383 1.354040 CTCGCTTCAGTGCTTGTAGG 58.646 55.000 0.00 0.00 0.00 3.18
3294 3384 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
3295 3385 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
3296 3386 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
3297 3387 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
3298 3388 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
3299 3389 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
3300 3390 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
3301 3391 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
3302 3392 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
3303 3393 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
3324 3414 4.899239 GAGGGGCGATGACAGCGG 62.899 72.222 15.74 0.00 35.00 5.52
3325 3415 4.899239 GGAGGGGCGATGACAGCG 62.899 72.222 9.11 9.11 35.00 5.18
3326 3416 4.554036 GGGAGGGGCGATGACAGC 62.554 72.222 0.00 0.00 0.00 4.40
3327 3417 2.765807 AGGGAGGGGCGATGACAG 60.766 66.667 0.00 0.00 0.00 3.51
3328 3418 2.764128 GAGGGAGGGGCGATGACA 60.764 66.667 0.00 0.00 0.00 3.58
3329 3419 3.917760 CGAGGGAGGGGCGATGAC 61.918 72.222 0.00 0.00 0.00 3.06
3347 3437 3.868200 AAGGTTTGCCTGGCTCCGG 62.868 63.158 21.03 0.00 46.33 5.14
3348 3438 2.282462 AAGGTTTGCCTGGCTCCG 60.282 61.111 21.03 0.00 46.33 4.63
3349 3439 1.115326 AACAAGGTTTGCCTGGCTCC 61.115 55.000 21.03 18.13 46.33 4.70
3350 3440 0.032540 CAACAAGGTTTGCCTGGCTC 59.967 55.000 21.03 10.08 46.33 4.70
3351 3441 0.687427 ACAACAAGGTTTGCCTGGCT 60.687 50.000 21.03 0.00 46.33 4.75
3352 3442 1.000274 CTACAACAAGGTTTGCCTGGC 60.000 52.381 12.87 12.87 46.33 4.85
3353 3443 2.306847 ACTACAACAAGGTTTGCCTGG 58.693 47.619 0.00 0.00 46.33 4.45
3354 3444 4.213482 GTCTACTACAACAAGGTTTGCCTG 59.787 45.833 0.00 0.00 46.33 4.85
3355 3445 4.141574 TGTCTACTACAACAAGGTTTGCCT 60.142 41.667 0.00 0.00 40.46 4.75
3356 3446 4.131596 TGTCTACTACAACAAGGTTTGCC 58.868 43.478 0.00 0.00 34.29 4.52
3357 3447 4.814771 ACTGTCTACTACAACAAGGTTTGC 59.185 41.667 0.00 0.00 37.74 3.68
3358 3448 5.175126 CGACTGTCTACTACAACAAGGTTTG 59.825 44.000 6.21 0.00 37.74 2.93
3359 3449 5.287226 CGACTGTCTACTACAACAAGGTTT 58.713 41.667 6.21 0.00 37.74 3.27
3360 3450 4.261909 CCGACTGTCTACTACAACAAGGTT 60.262 45.833 6.21 0.00 37.74 3.50
3361 3451 3.255149 CCGACTGTCTACTACAACAAGGT 59.745 47.826 6.21 0.00 37.74 3.50
3362 3452 3.367087 CCCGACTGTCTACTACAACAAGG 60.367 52.174 6.21 0.00 37.74 3.61
3363 3453 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
3364 3454 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
3365 3455 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
3366 3456 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
3367 3457 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
3368 3458 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
3369 3459 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
3370 3460 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
3371 3461 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
3372 3462 1.163554 ACGACTTCCCGACTGTCTAC 58.836 55.000 6.21 0.00 0.00 2.59
3373 3463 1.538512 CAACGACTTCCCGACTGTCTA 59.461 52.381 6.21 0.00 0.00 2.59
3374 3464 0.314302 CAACGACTTCCCGACTGTCT 59.686 55.000 6.21 0.00 0.00 3.41
3375 3465 0.031721 ACAACGACTTCCCGACTGTC 59.968 55.000 0.00 0.00 0.00 3.51
3376 3466 0.249322 CACAACGACTTCCCGACTGT 60.249 55.000 0.00 0.00 32.53 3.55
3377 3467 0.031585 TCACAACGACTTCCCGACTG 59.968 55.000 0.00 0.00 0.00 3.51
3378 3468 0.966920 ATCACAACGACTTCCCGACT 59.033 50.000 0.00 0.00 0.00 4.18
3379 3469 2.642139 TATCACAACGACTTCCCGAC 57.358 50.000 0.00 0.00 0.00 4.79
3380 3470 3.581755 CTTTATCACAACGACTTCCCGA 58.418 45.455 0.00 0.00 0.00 5.14
3381 3471 2.093783 GCTTTATCACAACGACTTCCCG 59.906 50.000 0.00 0.00 0.00 5.14
3382 3472 2.418976 GGCTTTATCACAACGACTTCCC 59.581 50.000 0.00 0.00 0.00 3.97
3383 3473 2.418976 GGGCTTTATCACAACGACTTCC 59.581 50.000 0.00 0.00 0.00 3.46
3384 3474 2.418976 GGGGCTTTATCACAACGACTTC 59.581 50.000 0.00 0.00 0.00 3.01
3385 3475 2.433436 GGGGCTTTATCACAACGACTT 58.567 47.619 0.00 0.00 0.00 3.01
3386 3476 1.674817 CGGGGCTTTATCACAACGACT 60.675 52.381 0.00 0.00 0.00 4.18
3387 3477 0.725117 CGGGGCTTTATCACAACGAC 59.275 55.000 0.00 0.00 0.00 4.34
3388 3478 0.322322 ACGGGGCTTTATCACAACGA 59.678 50.000 0.00 0.00 0.00 3.85
3389 3479 1.931172 CTACGGGGCTTTATCACAACG 59.069 52.381 0.00 0.00 0.00 4.10
3390 3480 3.255969 TCTACGGGGCTTTATCACAAC 57.744 47.619 0.00 0.00 0.00 3.32
3391 3481 3.602483 GTTCTACGGGGCTTTATCACAA 58.398 45.455 0.00 0.00 0.00 3.33
3392 3482 2.093341 GGTTCTACGGGGCTTTATCACA 60.093 50.000 0.00 0.00 0.00 3.58
3393 3483 2.093341 TGGTTCTACGGGGCTTTATCAC 60.093 50.000 0.00 0.00 0.00 3.06
3394 3484 2.189676 TGGTTCTACGGGGCTTTATCA 58.810 47.619 0.00 0.00 0.00 2.15
3395 3485 2.941064 GTTGGTTCTACGGGGCTTTATC 59.059 50.000 0.00 0.00 0.00 1.75
3396 3486 2.678769 CGTTGGTTCTACGGGGCTTTAT 60.679 50.000 0.00 0.00 35.47 1.40
3397 3487 1.338011 CGTTGGTTCTACGGGGCTTTA 60.338 52.381 0.00 0.00 35.47 1.85
3398 3488 0.604511 CGTTGGTTCTACGGGGCTTT 60.605 55.000 0.00 0.00 35.47 3.51
3399 3489 1.004200 CGTTGGTTCTACGGGGCTT 60.004 57.895 0.00 0.00 35.47 4.35
3400 3490 2.660802 CGTTGGTTCTACGGGGCT 59.339 61.111 0.00 0.00 35.47 5.19
3401 3491 3.122971 GCGTTGGTTCTACGGGGC 61.123 66.667 0.00 0.00 39.31 5.80
3402 3492 2.030958 GTGCGTTGGTTCTACGGGG 61.031 63.158 0.00 0.00 39.31 5.73
3403 3493 2.030958 GGTGCGTTGGTTCTACGGG 61.031 63.158 0.00 0.00 39.31 5.28
3404 3494 1.289109 CTGGTGCGTTGGTTCTACGG 61.289 60.000 0.00 0.00 39.31 4.02
3405 3495 0.319211 TCTGGTGCGTTGGTTCTACG 60.319 55.000 0.00 0.00 41.71 3.51
3406 3496 1.529865 GTTCTGGTGCGTTGGTTCTAC 59.470 52.381 0.00 0.00 0.00 2.59
3407 3497 1.139256 TGTTCTGGTGCGTTGGTTCTA 59.861 47.619 0.00 0.00 0.00 2.10
3408 3498 0.107410 TGTTCTGGTGCGTTGGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
3409 3499 0.307760 CTGTTCTGGTGCGTTGGTTC 59.692 55.000 0.00 0.00 0.00 3.62
3410 3500 0.107410 TCTGTTCTGGTGCGTTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
3411 3501 0.107410 TTCTGTTCTGGTGCGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
3412 3502 1.021202 TTTCTGTTCTGGTGCGTTGG 58.979 50.000 0.00 0.00 0.00 3.77
3413 3503 1.268539 GGTTTCTGTTCTGGTGCGTTG 60.269 52.381 0.00 0.00 0.00 4.10
3414 3504 1.021968 GGTTTCTGTTCTGGTGCGTT 58.978 50.000 0.00 0.00 0.00 4.84
3415 3505 1.157870 CGGTTTCTGTTCTGGTGCGT 61.158 55.000 0.00 0.00 0.00 5.24
3416 3506 1.569493 CGGTTTCTGTTCTGGTGCG 59.431 57.895 0.00 0.00 0.00 5.34
3417 3507 1.282875 GCGGTTTCTGTTCTGGTGC 59.717 57.895 0.00 0.00 0.00 5.01
3418 3508 1.841663 CGGCGGTTTCTGTTCTGGTG 61.842 60.000 0.00 0.00 0.00 4.17
3419 3509 1.597027 CGGCGGTTTCTGTTCTGGT 60.597 57.895 0.00 0.00 0.00 4.00
3420 3510 2.966309 GCGGCGGTTTCTGTTCTGG 61.966 63.158 9.78 0.00 0.00 3.86
3421 3511 2.556287 GCGGCGGTTTCTGTTCTG 59.444 61.111 9.78 0.00 0.00 3.02
3422 3512 3.041940 CGCGGCGGTTTCTGTTCT 61.042 61.111 15.84 0.00 0.00 3.01
3423 3513 4.084888 CCGCGGCGGTTTCTGTTC 62.085 66.667 32.14 0.00 42.73 3.18
3433 3523 2.607668 TACACTCTTCATCCGCGGCG 62.608 60.000 23.51 16.78 0.00 6.46
3434 3524 0.872021 CTACACTCTTCATCCGCGGC 60.872 60.000 23.51 0.00 0.00 6.53
3435 3525 0.738975 TCTACACTCTTCATCCGCGG 59.261 55.000 22.12 22.12 0.00 6.46
3436 3526 2.033424 TGATCTACACTCTTCATCCGCG 59.967 50.000 0.00 0.00 0.00 6.46
3437 3527 3.717400 TGATCTACACTCTTCATCCGC 57.283 47.619 0.00 0.00 0.00 5.54
3438 3528 5.521735 CCTTTTGATCTACACTCTTCATCCG 59.478 44.000 0.00 0.00 0.00 4.18
3439 3529 6.644347 TCCTTTTGATCTACACTCTTCATCC 58.356 40.000 0.00 0.00 0.00 3.51
3440 3530 8.364129 GATCCTTTTGATCTACACTCTTCATC 57.636 38.462 0.00 0.00 45.46 2.92
3454 3544 9.753674 TGTATTTTCAGGTTAGATCCTTTTGAT 57.246 29.630 0.00 0.00 35.37 2.57
3455 3545 9.010029 GTGTATTTTCAGGTTAGATCCTTTTGA 57.990 33.333 0.00 0.00 35.37 2.69
3456 3546 7.962918 CGTGTATTTTCAGGTTAGATCCTTTTG 59.037 37.037 0.00 0.00 35.37 2.44
3457 3547 7.881232 TCGTGTATTTTCAGGTTAGATCCTTTT 59.119 33.333 0.00 0.00 35.37 2.27
3458 3548 7.391620 TCGTGTATTTTCAGGTTAGATCCTTT 58.608 34.615 0.00 0.00 35.37 3.11
3459 3549 6.942976 TCGTGTATTTTCAGGTTAGATCCTT 58.057 36.000 0.00 0.00 35.37 3.36
3460 3550 6.540438 TCGTGTATTTTCAGGTTAGATCCT 57.460 37.500 0.00 0.00 38.51 3.24
3461 3551 6.592607 TGTTCGTGTATTTTCAGGTTAGATCC 59.407 38.462 0.00 0.00 0.00 3.36
3462 3552 7.591006 TGTTCGTGTATTTTCAGGTTAGATC 57.409 36.000 0.00 0.00 0.00 2.75
3463 3553 7.972832 TTGTTCGTGTATTTTCAGGTTAGAT 57.027 32.000 0.00 0.00 0.00 1.98
3464 3554 7.711772 TCTTTGTTCGTGTATTTTCAGGTTAGA 59.288 33.333 0.00 0.00 0.00 2.10
3465 3555 7.797123 GTCTTTGTTCGTGTATTTTCAGGTTAG 59.203 37.037 0.00 0.00 0.00 2.34
3466 3556 7.517101 CGTCTTTGTTCGTGTATTTTCAGGTTA 60.517 37.037 0.00 0.00 0.00 2.85
3467 3557 6.492254 GTCTTTGTTCGTGTATTTTCAGGTT 58.508 36.000 0.00 0.00 0.00 3.50
3468 3558 5.277154 CGTCTTTGTTCGTGTATTTTCAGGT 60.277 40.000 0.00 0.00 0.00 4.00
3469 3559 5.050634 TCGTCTTTGTTCGTGTATTTTCAGG 60.051 40.000 0.00 0.00 0.00 3.86
3470 3560 5.969741 TCGTCTTTGTTCGTGTATTTTCAG 58.030 37.500 0.00 0.00 0.00 3.02
3471 3561 5.970140 TCGTCTTTGTTCGTGTATTTTCA 57.030 34.783 0.00 0.00 0.00 2.69
3472 3562 5.332594 CGTTCGTCTTTGTTCGTGTATTTTC 59.667 40.000 0.00 0.00 0.00 2.29
3473 3563 5.005586 TCGTTCGTCTTTGTTCGTGTATTTT 59.994 36.000 0.00 0.00 0.00 1.82
3474 3564 4.503734 TCGTTCGTCTTTGTTCGTGTATTT 59.496 37.500 0.00 0.00 0.00 1.40
3475 3565 4.043750 TCGTTCGTCTTTGTTCGTGTATT 58.956 39.130 0.00 0.00 0.00 1.89
3476 3566 3.423206 GTCGTTCGTCTTTGTTCGTGTAT 59.577 43.478 0.00 0.00 0.00 2.29
3477 3567 2.783284 GTCGTTCGTCTTTGTTCGTGTA 59.217 45.455 0.00 0.00 0.00 2.90
3478 3568 1.585214 GTCGTTCGTCTTTGTTCGTGT 59.415 47.619 0.00 0.00 0.00 4.49
3479 3569 1.393858 CGTCGTTCGTCTTTGTTCGTG 60.394 52.381 0.00 0.00 34.52 4.35
3480 3570 0.841984 CGTCGTTCGTCTTTGTTCGT 59.158 50.000 0.00 0.00 34.52 3.85
3481 3571 1.114842 TCGTCGTTCGTCTTTGTTCG 58.885 50.000 0.00 0.00 40.80 3.95
3482 3572 2.279659 TGTTCGTCGTTCGTCTTTGTTC 59.720 45.455 0.00 0.00 40.80 3.18
3483 3573 2.261345 TGTTCGTCGTTCGTCTTTGTT 58.739 42.857 0.00 0.00 40.80 2.83
3484 3574 1.850441 CTGTTCGTCGTTCGTCTTTGT 59.150 47.619 0.00 0.00 40.80 2.83
3485 3575 2.114056 TCTGTTCGTCGTTCGTCTTTG 58.886 47.619 0.00 0.00 40.80 2.77
3486 3576 2.480224 TCTGTTCGTCGTTCGTCTTT 57.520 45.000 0.00 0.00 40.80 2.52
3487 3577 2.582687 GATCTGTTCGTCGTTCGTCTT 58.417 47.619 0.00 0.00 40.80 3.01
3488 3578 1.135746 GGATCTGTTCGTCGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
3489 3579 1.257539 GGATCTGTTCGTCGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
3490 3580 0.453950 CGGATCTGTTCGTCGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
3491 3581 0.179207 TCGGATCTGTTCGTCGTTCG 60.179 55.000 0.42 0.00 41.41 3.95
3492 3582 1.536149 CTCGGATCTGTTCGTCGTTC 58.464 55.000 0.42 0.00 0.00 3.95
3493 3583 0.456312 GCTCGGATCTGTTCGTCGTT 60.456 55.000 0.42 0.00 0.00 3.85
3494 3584 1.136984 GCTCGGATCTGTTCGTCGT 59.863 57.895 0.42 0.00 0.00 4.34
3495 3585 0.456142 TTGCTCGGATCTGTTCGTCG 60.456 55.000 0.42 0.00 0.00 5.12
3496 3586 1.710013 TTTGCTCGGATCTGTTCGTC 58.290 50.000 0.42 0.00 0.00 4.20
3497 3587 2.271800 GATTTGCTCGGATCTGTTCGT 58.728 47.619 0.42 0.00 0.00 3.85
3498 3588 1.594862 GGATTTGCTCGGATCTGTTCG 59.405 52.381 0.42 0.00 0.00 3.95
3499 3589 2.352960 GTGGATTTGCTCGGATCTGTTC 59.647 50.000 0.42 0.00 0.00 3.18
3500 3590 2.359900 GTGGATTTGCTCGGATCTGTT 58.640 47.619 0.42 0.00 0.00 3.16
3501 3591 1.740380 CGTGGATTTGCTCGGATCTGT 60.740 52.381 0.42 0.00 0.00 3.41
3502 3592 0.933097 CGTGGATTTGCTCGGATCTG 59.067 55.000 0.00 0.00 0.00 2.90
3503 3593 0.824109 TCGTGGATTTGCTCGGATCT 59.176 50.000 0.00 0.00 0.00 2.75
3504 3594 1.651987 TTCGTGGATTTGCTCGGATC 58.348 50.000 0.00 0.00 0.00 3.36
3505 3595 2.009774 CTTTCGTGGATTTGCTCGGAT 58.990 47.619 0.00 0.00 0.00 4.18
3506 3596 1.438651 CTTTCGTGGATTTGCTCGGA 58.561 50.000 0.00 0.00 0.00 4.55
3507 3597 0.447801 CCTTTCGTGGATTTGCTCGG 59.552 55.000 0.00 0.00 0.00 4.63
3508 3598 0.179189 GCCTTTCGTGGATTTGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
3509 3599 0.881118 TGCCTTTCGTGGATTTGCTC 59.119 50.000 0.00 0.00 0.00 4.26
3510 3600 0.883833 CTGCCTTTCGTGGATTTGCT 59.116 50.000 0.00 0.00 0.00 3.91
3511 3601 0.881118 TCTGCCTTTCGTGGATTTGC 59.119 50.000 0.00 0.00 0.00 3.68
3512 3602 2.098117 GGATCTGCCTTTCGTGGATTTG 59.902 50.000 0.00 0.00 0.00 2.32
3513 3603 2.369394 GGATCTGCCTTTCGTGGATTT 58.631 47.619 0.00 0.00 0.00 2.17
3514 3604 1.743772 CGGATCTGCCTTTCGTGGATT 60.744 52.381 0.00 0.00 0.00 3.01
3515 3605 0.179073 CGGATCTGCCTTTCGTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
3516 3606 1.218047 CGGATCTGCCTTTCGTGGA 59.782 57.895 0.00 0.00 0.00 4.02
3517 3607 2.464459 GCGGATCTGCCTTTCGTGG 61.464 63.158 16.13 0.00 0.00 4.94
3518 3608 3.093278 GCGGATCTGCCTTTCGTG 58.907 61.111 16.13 0.00 0.00 4.35
3534 3624 4.980805 TGGAGTTGTGTCGCCGGC 62.981 66.667 19.07 19.07 0.00 6.13
3535 3625 3.041940 GTGGAGTTGTGTCGCCGG 61.042 66.667 0.00 0.00 0.00 6.13
3536 3626 2.279851 TGTGGAGTTGTGTCGCCG 60.280 61.111 0.00 0.00 0.00 6.46
3537 3627 2.594962 CGTGTGGAGTTGTGTCGCC 61.595 63.158 0.00 0.00 0.00 5.54
3538 3628 2.928361 CGTGTGGAGTTGTGTCGC 59.072 61.111 0.00 0.00 0.00 5.19
3539 3629 2.594962 GGCGTGTGGAGTTGTGTCG 61.595 63.158 0.00 0.00 0.00 4.35
3540 3630 2.251642 GGGCGTGTGGAGTTGTGTC 61.252 63.158 0.00 0.00 0.00 3.67
3541 3631 2.203153 GGGCGTGTGGAGTTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
3542 3632 2.203139 TGGGCGTGTGGAGTTGTG 60.203 61.111 0.00 0.00 0.00 3.33
3543 3633 2.203153 GTGGGCGTGTGGAGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
3544 3634 2.978010 GGTGGGCGTGTGGAGTTG 60.978 66.667 0.00 0.00 0.00 3.16
3545 3635 4.619227 CGGTGGGCGTGTGGAGTT 62.619 66.667 0.00 0.00 0.00 3.01
3550 3640 4.735132 ATCGTCGGTGGGCGTGTG 62.735 66.667 0.00 0.00 0.00 3.82
3551 3641 4.735132 CATCGTCGGTGGGCGTGT 62.735 66.667 0.00 0.00 0.00 4.49
3555 3645 3.499737 CTTGCATCGTCGGTGGGC 61.500 66.667 7.76 0.00 0.00 5.36
3556 3646 2.100631 GTCTTGCATCGTCGGTGGG 61.101 63.158 7.76 0.00 0.00 4.61
3557 3647 2.444624 CGTCTTGCATCGTCGGTGG 61.445 63.158 7.76 0.00 0.00 4.61
3558 3648 3.071459 GCGTCTTGCATCGTCGGTG 62.071 63.158 0.00 0.00 45.45 4.94
3559 3649 2.809601 GCGTCTTGCATCGTCGGT 60.810 61.111 0.00 0.00 45.45 4.69
3568 3658 0.452784 GTTTCGGTGATGCGTCTTGC 60.453 55.000 7.58 0.00 46.70 4.01
3569 3659 0.179250 CGTTTCGGTGATGCGTCTTG 60.179 55.000 7.58 0.00 0.00 3.02
3570 3660 1.289109 CCGTTTCGGTGATGCGTCTT 61.289 55.000 7.58 0.00 42.73 3.01
3571 3661 1.736645 CCGTTTCGGTGATGCGTCT 60.737 57.895 7.58 0.00 42.73 4.18
3572 3662 2.736682 CCCGTTTCGGTGATGCGTC 61.737 63.158 0.00 0.00 46.80 5.19
3573 3663 2.740826 CCCGTTTCGGTGATGCGT 60.741 61.111 7.40 0.00 46.80 5.24
3574 3664 3.496131 CCCCGTTTCGGTGATGCG 61.496 66.667 7.40 0.00 46.80 4.73
3575 3665 2.862674 TAGCCCCGTTTCGGTGATGC 62.863 60.000 7.40 4.71 46.80 3.91
3576 3666 0.810031 CTAGCCCCGTTTCGGTGATG 60.810 60.000 7.40 0.00 46.80 3.07
3577 3667 1.520666 CTAGCCCCGTTTCGGTGAT 59.479 57.895 7.40 0.00 46.80 3.06
3578 3668 2.652095 CCTAGCCCCGTTTCGGTGA 61.652 63.158 7.40 0.00 46.80 4.02
3579 3669 2.125269 CCTAGCCCCGTTTCGGTG 60.125 66.667 7.40 0.00 46.80 4.94
3580 3670 4.091939 GCCTAGCCCCGTTTCGGT 62.092 66.667 7.40 0.00 46.80 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.