Multiple sequence alignment - TraesCS4D01G222900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G222900 chr4D 100.000 4004 0 0 1 4004 379914190 379910187 0.000000e+00 7395.0
1 TraesCS4D01G222900 chr4A 95.371 2981 91 26 721 3686 84532952 84535900 0.000000e+00 4697.0
2 TraesCS4D01G222900 chr4A 84.177 316 16 17 431 726 84532381 84532682 3.940000e-70 276.0
3 TraesCS4D01G222900 chr4A 93.506 77 2 3 323 399 84531812 84531885 1.180000e-20 111.0
4 TraesCS4D01G222900 chr4A 86.747 83 7 4 3923 4003 84536097 84536177 5.510000e-14 89.8
5 TraesCS4D01G222900 chr4A 100.000 37 0 0 3726 3762 84535914 84535950 7.180000e-08 69.4
6 TraesCS4D01G222900 chr4B 94.482 3081 93 26 310 3360 466970471 466967438 0.000000e+00 4676.0
7 TraesCS4D01G222900 chr4B 95.680 625 4 5 3380 4003 466967447 466966845 0.000000e+00 983.0
8 TraesCS4D01G222900 chr4B 84.884 172 15 6 1 162 466996442 466996272 3.200000e-36 163.0
9 TraesCS4D01G222900 chr1B 94.311 668 22 4 949 1613 654525528 654526182 0.000000e+00 1009.0
10 TraesCS4D01G222900 chr1B 82.500 120 13 3 16 127 288174270 288174389 9.160000e-17 99.0
11 TraesCS4D01G222900 chrUn 100.000 393 0 0 2491 2883 479655863 479656255 0.000000e+00 726.0
12 TraesCS4D01G222900 chrUn 96.804 219 7 0 1395 1613 473128143 473127925 2.270000e-97 366.0
13 TraesCS4D01G222900 chrUn 95.175 228 8 1 1124 1348 473128369 473128142 1.370000e-94 357.0
14 TraesCS4D01G222900 chrUn 95.175 228 8 1 1124 1348 475075989 475075762 1.370000e-94 357.0
15 TraesCS4D01G222900 chrUn 95.890 219 9 0 1395 1613 475075763 475075545 4.920000e-94 355.0
16 TraesCS4D01G222900 chr2B 97.906 382 8 0 1232 1613 111369487 111369868 0.000000e+00 662.0
17 TraesCS4D01G222900 chr2B 92.157 51 4 0 1159 1209 111369436 111369486 5.550000e-09 73.1
18 TraesCS4D01G222900 chr6A 89.706 136 5 4 1 127 430921763 430921628 8.900000e-37 165.0
19 TraesCS4D01G222900 chr6A 80.000 160 27 3 173 328 503825365 503825207 3.270000e-21 113.0
20 TraesCS4D01G222900 chr7D 81.735 219 17 11 1269 1465 606825961 606825744 1.150000e-35 161.0
21 TraesCS4D01G222900 chr7D 86.207 116 8 5 58 165 579334203 579334088 7.030000e-23 119.0
22 TraesCS4D01G222900 chr7B 81.364 220 16 15 1266 1462 693000316 693000533 5.360000e-34 156.0
23 TraesCS4D01G222900 chr7B 80.132 151 23 5 172 319 249672408 249672262 5.470000e-19 106.0
24 TraesCS4D01G222900 chr3D 83.951 162 21 3 167 324 70685686 70685846 2.490000e-32 150.0
25 TraesCS4D01G222900 chr3D 84.685 111 13 3 1 108 277064881 277064990 1.520000e-19 108.0
26 TraesCS4D01G222900 chr7A 80.365 219 20 8 1266 1462 699414581 699414798 1.160000e-30 145.0
27 TraesCS4D01G222900 chr7A 80.368 163 28 2 159 317 463446512 463446350 1.950000e-23 121.0
28 TraesCS4D01G222900 chr3A 81.548 168 28 1 158 322 202823197 202823364 6.980000e-28 135.0
29 TraesCS4D01G222900 chr3A 78.146 151 23 6 173 322 102837977 102837836 1.980000e-13 87.9
30 TraesCS4D01G222900 chr5B 81.818 154 23 3 173 322 314907612 314907764 1.510000e-24 124.0
31 TraesCS4D01G222900 chr5B 83.824 136 13 5 1 127 245681683 245681818 1.950000e-23 121.0
32 TraesCS4D01G222900 chr5A 81.699 153 24 2 173 322 69357959 69357808 1.510000e-24 124.0
33 TraesCS4D01G222900 chr5A 86.301 73 4 2 58 124 584546902 584546974 1.540000e-09 75.0
34 TraesCS4D01G222900 chr3B 86.066 122 10 3 12 126 659818240 659818361 1.510000e-24 124.0
35 TraesCS4D01G222900 chr3B 83.784 111 14 3 1 108 373286947 373286838 7.080000e-18 102.0
36 TraesCS4D01G222900 chr2D 84.314 102 13 2 4 102 43277322 43277221 3.290000e-16 97.1
37 TraesCS4D01G222900 chr2A 91.667 48 1 3 115 159 452587684 452587731 3.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G222900 chr4D 379910187 379914190 4003 True 7395.00 7395 100.0000 1 4004 1 chr4D.!!$R1 4003
1 TraesCS4D01G222900 chr4A 84531812 84536177 4365 False 1048.64 4697 91.9602 323 4003 5 chr4A.!!$F1 3680
2 TraesCS4D01G222900 chr4B 466966845 466970471 3626 True 2829.50 4676 95.0810 310 4003 2 chr4B.!!$R2 3693
3 TraesCS4D01G222900 chr1B 654525528 654526182 654 False 1009.00 1009 94.3110 949 1613 1 chr1B.!!$F2 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.032815 GAAGCAGCGGGATCCTCTAC 59.967 60.0 12.58 4.31 0.00 2.59 F
261 262 0.249657 GCAGCGGGATCCTCTACAAG 60.250 60.0 12.58 0.00 0.00 3.16 F
539 1005 0.458716 GCTACGGCTTCTGTCCTGTC 60.459 60.0 0.00 0.00 35.22 3.51 F
2220 2997 0.594284 GGATTTCCGGAGCGTCTACG 60.594 60.0 3.34 4.72 37.59 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2997 1.229400 TGAGGTGGTAGGGGTGGTC 60.229 63.158 0.00 0.00 0.00 4.02 R
2324 3101 4.217118 CACTCTTTGACTTAGCAATTGCCT 59.783 41.667 26.45 15.86 43.38 4.75 R
2897 3680 1.129998 CACCAGAGAGCATTTCAAGCG 59.870 52.381 0.00 0.00 37.01 4.68 R
3561 4354 0.320771 CAGCAAACCAGCGACTACCT 60.321 55.000 0.00 0.00 40.15 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.916439 GTTGAAAACGGCGGCAAG 58.084 55.556 13.24 0.00 36.92 4.01
32 33 2.300066 GTTGAAAACGGCGGCAAGC 61.300 57.895 13.24 0.00 40.86 4.01
53 54 2.721231 CCACGCGGGCAAATATGG 59.279 61.111 12.47 1.67 0.00 2.74
54 55 1.821759 CCACGCGGGCAAATATGGA 60.822 57.895 12.47 0.00 0.00 3.41
55 56 1.172180 CCACGCGGGCAAATATGGAT 61.172 55.000 12.47 0.00 0.00 3.41
56 57 0.238289 CACGCGGGCAAATATGGATC 59.762 55.000 12.47 0.00 0.00 3.36
57 58 1.227999 ACGCGGGCAAATATGGATCG 61.228 55.000 12.47 0.00 0.00 3.69
58 59 1.875963 GCGGGCAAATATGGATCGG 59.124 57.895 0.00 0.00 0.00 4.18
59 60 1.875963 CGGGCAAATATGGATCGGC 59.124 57.895 0.00 0.00 0.00 5.54
60 61 1.875963 GGGCAAATATGGATCGGCG 59.124 57.895 0.00 0.00 0.00 6.46
61 62 0.889186 GGGCAAATATGGATCGGCGT 60.889 55.000 6.85 0.00 0.00 5.68
62 63 0.951558 GGCAAATATGGATCGGCGTT 59.048 50.000 6.85 0.00 0.00 4.84
63 64 1.334960 GGCAAATATGGATCGGCGTTG 60.335 52.381 6.85 2.23 0.00 4.10
64 65 1.334960 GCAAATATGGATCGGCGTTGG 60.335 52.381 6.85 0.00 0.00 3.77
65 66 1.266718 CAAATATGGATCGGCGTTGGG 59.733 52.381 6.85 0.00 0.00 4.12
66 67 0.889186 AATATGGATCGGCGTTGGGC 60.889 55.000 6.85 0.00 42.51 5.36
67 68 2.050836 ATATGGATCGGCGTTGGGCA 62.051 55.000 6.85 0.00 46.16 5.36
68 69 2.933878 TATGGATCGGCGTTGGGCAC 62.934 60.000 6.85 0.00 46.16 5.01
70 71 3.799755 GATCGGCGTTGGGCACAC 61.800 66.667 6.85 0.00 46.16 3.82
71 72 4.329545 ATCGGCGTTGGGCACACT 62.330 61.111 6.85 0.00 46.16 3.55
82 83 2.904866 GCACACTGCCGACCCAAA 60.905 61.111 0.00 0.00 37.42 3.28
83 84 2.268076 GCACACTGCCGACCCAAAT 61.268 57.895 0.00 0.00 37.42 2.32
84 85 1.875963 CACACTGCCGACCCAAATC 59.124 57.895 0.00 0.00 0.00 2.17
85 86 0.888736 CACACTGCCGACCCAAATCA 60.889 55.000 0.00 0.00 0.00 2.57
86 87 0.038166 ACACTGCCGACCCAAATCAT 59.962 50.000 0.00 0.00 0.00 2.45
87 88 1.280710 ACACTGCCGACCCAAATCATA 59.719 47.619 0.00 0.00 0.00 2.15
88 89 2.290641 ACACTGCCGACCCAAATCATAA 60.291 45.455 0.00 0.00 0.00 1.90
89 90 2.752354 CACTGCCGACCCAAATCATAAA 59.248 45.455 0.00 0.00 0.00 1.40
90 91 2.752903 ACTGCCGACCCAAATCATAAAC 59.247 45.455 0.00 0.00 0.00 2.01
91 92 2.752354 CTGCCGACCCAAATCATAAACA 59.248 45.455 0.00 0.00 0.00 2.83
92 93 2.752354 TGCCGACCCAAATCATAAACAG 59.248 45.455 0.00 0.00 0.00 3.16
93 94 2.099098 GCCGACCCAAATCATAAACAGG 59.901 50.000 0.00 0.00 0.00 4.00
94 95 3.616219 CCGACCCAAATCATAAACAGGA 58.384 45.455 0.00 0.00 0.00 3.86
95 96 3.377172 CCGACCCAAATCATAAACAGGAC 59.623 47.826 0.00 0.00 0.00 3.85
96 97 3.063452 CGACCCAAATCATAAACAGGACG 59.937 47.826 0.00 0.00 0.00 4.79
97 98 3.352648 ACCCAAATCATAAACAGGACGG 58.647 45.455 0.00 0.00 0.00 4.79
98 99 3.009695 ACCCAAATCATAAACAGGACGGA 59.990 43.478 0.00 0.00 0.00 4.69
99 100 3.377172 CCCAAATCATAAACAGGACGGAC 59.623 47.826 0.00 0.00 0.00 4.79
100 101 3.063452 CCAAATCATAAACAGGACGGACG 59.937 47.826 0.00 0.00 0.00 4.79
101 102 1.935933 ATCATAAACAGGACGGACGC 58.064 50.000 0.00 0.00 0.00 5.19
102 103 0.108520 TCATAAACAGGACGGACGCC 60.109 55.000 0.00 0.00 0.00 5.68
127 128 1.830086 CGACCCAAACGGACAAAAAC 58.170 50.000 0.00 0.00 34.64 2.43
128 129 1.534385 CGACCCAAACGGACAAAAACC 60.534 52.381 0.00 0.00 34.64 3.27
129 130 1.752498 GACCCAAACGGACAAAAACCT 59.248 47.619 0.00 0.00 34.64 3.50
130 131 2.166870 GACCCAAACGGACAAAAACCTT 59.833 45.455 0.00 0.00 34.64 3.50
131 132 2.166870 ACCCAAACGGACAAAAACCTTC 59.833 45.455 0.00 0.00 34.64 3.46
132 133 2.482316 CCCAAACGGACAAAAACCTTCC 60.482 50.000 0.00 0.00 0.00 3.46
136 137 2.855660 CGGACAAAAACCTTCCGTTT 57.144 45.000 1.03 0.00 46.92 3.60
137 138 2.456010 CGGACAAAAACCTTCCGTTTG 58.544 47.619 1.03 0.00 44.09 2.93
138 139 2.796735 CGGACAAAAACCTTCCGTTTGG 60.797 50.000 1.03 0.00 44.09 3.28
139 140 2.482316 GGACAAAAACCTTCCGTTTGGG 60.482 50.000 0.00 0.00 44.09 4.12
140 141 2.166870 GACAAAAACCTTCCGTTTGGGT 59.833 45.455 0.00 0.00 44.09 4.51
141 142 2.166870 ACAAAAACCTTCCGTTTGGGTC 59.833 45.455 0.00 0.00 44.09 4.46
142 143 1.026584 AAAACCTTCCGTTTGGGTCG 58.973 50.000 0.00 0.00 44.09 4.79
143 144 0.820482 AAACCTTCCGTTTGGGTCGG 60.820 55.000 0.00 0.00 43.21 4.79
144 145 1.986632 AACCTTCCGTTTGGGTCGGT 61.987 55.000 4.36 0.00 46.86 4.69
145 146 1.964373 CCTTCCGTTTGGGTCGGTG 60.964 63.158 4.36 0.08 46.86 4.94
146 147 2.592287 TTCCGTTTGGGTCGGTGC 60.592 61.111 4.36 0.00 46.86 5.01
147 148 4.973055 TCCGTTTGGGTCGGTGCG 62.973 66.667 4.36 0.00 46.86 5.34
149 150 3.273834 CGTTTGGGTCGGTGCGTT 61.274 61.111 0.00 0.00 0.00 4.84
150 151 2.330041 GTTTGGGTCGGTGCGTTG 59.670 61.111 0.00 0.00 0.00 4.10
151 152 2.181521 GTTTGGGTCGGTGCGTTGA 61.182 57.895 0.00 0.00 0.00 3.18
152 153 1.451567 TTTGGGTCGGTGCGTTGAA 60.452 52.632 0.00 0.00 0.00 2.69
153 154 1.440938 TTTGGGTCGGTGCGTTGAAG 61.441 55.000 0.00 0.00 0.00 3.02
154 155 2.280592 GGGTCGGTGCGTTGAAGT 60.281 61.111 0.00 0.00 0.00 3.01
155 156 1.890510 GGGTCGGTGCGTTGAAGTT 60.891 57.895 0.00 0.00 0.00 2.66
156 157 1.278637 GGTCGGTGCGTTGAAGTTG 59.721 57.895 0.00 0.00 0.00 3.16
157 158 1.368850 GTCGGTGCGTTGAAGTTGC 60.369 57.895 0.00 0.00 0.00 4.17
158 159 1.522806 TCGGTGCGTTGAAGTTGCT 60.523 52.632 0.00 0.00 0.00 3.91
159 160 1.082756 CGGTGCGTTGAAGTTGCTC 60.083 57.895 0.00 0.00 0.00 4.26
160 161 1.498865 CGGTGCGTTGAAGTTGCTCT 61.499 55.000 0.00 0.00 0.00 4.09
161 162 0.663153 GGTGCGTTGAAGTTGCTCTT 59.337 50.000 0.00 0.00 39.32 2.85
162 163 1.871039 GGTGCGTTGAAGTTGCTCTTA 59.129 47.619 0.00 0.00 36.40 2.10
163 164 2.349532 GGTGCGTTGAAGTTGCTCTTAC 60.350 50.000 0.00 0.00 36.40 2.34
164 165 1.525197 TGCGTTGAAGTTGCTCTTACG 59.475 47.619 10.70 10.70 39.60 3.18
165 166 2.212922 CGTTGAAGTTGCTCTTACGC 57.787 50.000 0.00 0.00 36.40 4.42
166 167 1.136336 CGTTGAAGTTGCTCTTACGCC 60.136 52.381 0.00 0.00 36.40 5.68
167 168 1.871039 GTTGAAGTTGCTCTTACGCCA 59.129 47.619 0.00 0.00 36.40 5.69
168 169 2.472695 TGAAGTTGCTCTTACGCCAT 57.527 45.000 0.00 0.00 36.40 4.40
169 170 2.076100 TGAAGTTGCTCTTACGCCATG 58.924 47.619 0.00 0.00 36.40 3.66
170 171 0.804989 AAGTTGCTCTTACGCCATGC 59.195 50.000 0.00 0.00 34.23 4.06
171 172 0.321564 AGTTGCTCTTACGCCATGCA 60.322 50.000 0.00 0.00 0.00 3.96
172 173 0.179189 GTTGCTCTTACGCCATGCAC 60.179 55.000 0.00 0.00 33.13 4.57
173 174 0.605050 TTGCTCTTACGCCATGCACA 60.605 50.000 0.00 0.00 33.13 4.57
174 175 0.605050 TGCTCTTACGCCATGCACAA 60.605 50.000 0.00 0.00 0.00 3.33
175 176 0.734889 GCTCTTACGCCATGCACAAT 59.265 50.000 0.00 0.00 0.00 2.71
176 177 1.532505 GCTCTTACGCCATGCACAATG 60.533 52.381 0.00 0.00 35.89 2.82
177 178 0.451383 TCTTACGCCATGCACAATGC 59.549 50.000 0.00 0.00 45.29 3.56
186 187 3.938048 GCACAATGCATAGCCCCA 58.062 55.556 0.00 0.00 44.26 4.96
187 188 1.737816 GCACAATGCATAGCCCCAG 59.262 57.895 0.00 0.00 44.26 4.45
188 189 1.741327 GCACAATGCATAGCCCCAGG 61.741 60.000 0.00 0.00 44.26 4.45
189 190 1.111116 CACAATGCATAGCCCCAGGG 61.111 60.000 0.00 0.00 38.57 4.45
190 191 1.231068 CAATGCATAGCCCCAGGGT 59.769 57.895 4.22 0.00 37.65 4.34
191 192 1.111116 CAATGCATAGCCCCAGGGTG 61.111 60.000 4.22 0.00 37.65 4.61
192 193 1.288508 AATGCATAGCCCCAGGGTGA 61.289 55.000 4.22 0.00 37.65 4.02
193 194 1.070127 ATGCATAGCCCCAGGGTGAT 61.070 55.000 4.22 0.00 37.65 3.06
194 195 1.228367 GCATAGCCCCAGGGTGATG 60.228 63.158 4.22 9.26 37.65 3.07
195 196 1.228367 CATAGCCCCAGGGTGATGC 60.228 63.158 4.22 0.00 37.65 3.91
196 197 2.464403 ATAGCCCCAGGGTGATGCC 61.464 63.158 4.22 0.00 37.65 4.40
205 206 4.102113 GGTGATGCCCCATATGCC 57.898 61.111 0.00 0.00 0.00 4.40
206 207 1.153524 GGTGATGCCCCATATGCCA 59.846 57.895 0.00 0.00 0.00 4.92
207 208 0.251922 GGTGATGCCCCATATGCCAT 60.252 55.000 0.00 0.00 0.00 4.40
208 209 0.892755 GTGATGCCCCATATGCCATG 59.107 55.000 0.00 0.00 0.00 3.66
209 210 0.483770 TGATGCCCCATATGCCATGT 59.516 50.000 0.00 0.00 0.00 3.21
210 211 1.709679 TGATGCCCCATATGCCATGTA 59.290 47.619 0.00 0.00 0.00 2.29
211 212 2.312440 TGATGCCCCATATGCCATGTAT 59.688 45.455 0.00 0.00 0.00 2.29
212 213 2.512692 TGCCCCATATGCCATGTATC 57.487 50.000 0.00 0.00 0.00 2.24
213 214 1.339920 TGCCCCATATGCCATGTATCG 60.340 52.381 0.00 0.00 0.00 2.92
214 215 2.018644 GCCCCATATGCCATGTATCGG 61.019 57.143 0.00 0.00 0.00 4.18
215 216 1.559219 CCCCATATGCCATGTATCGGA 59.441 52.381 0.00 0.00 0.00 4.55
216 217 2.173356 CCCCATATGCCATGTATCGGAT 59.827 50.000 0.00 0.00 0.00 4.18
217 218 3.208594 CCCATATGCCATGTATCGGATG 58.791 50.000 0.00 0.00 0.00 3.51
218 219 3.370846 CCCATATGCCATGTATCGGATGT 60.371 47.826 0.00 0.00 0.00 3.06
219 220 4.264253 CCATATGCCATGTATCGGATGTT 58.736 43.478 0.00 0.00 0.00 2.71
220 221 5.427378 CCATATGCCATGTATCGGATGTTA 58.573 41.667 0.00 0.00 0.00 2.41
221 222 5.525012 CCATATGCCATGTATCGGATGTTAG 59.475 44.000 0.00 0.00 0.00 2.34
222 223 3.401033 TGCCATGTATCGGATGTTAGG 57.599 47.619 0.00 0.00 0.00 2.69
223 224 2.969262 TGCCATGTATCGGATGTTAGGA 59.031 45.455 0.00 0.00 0.00 2.94
224 225 3.389656 TGCCATGTATCGGATGTTAGGAA 59.610 43.478 0.00 0.00 0.00 3.36
225 226 4.141597 TGCCATGTATCGGATGTTAGGAAA 60.142 41.667 0.00 0.00 0.00 3.13
226 227 4.819630 GCCATGTATCGGATGTTAGGAAAA 59.180 41.667 0.00 0.00 0.00 2.29
227 228 5.298276 GCCATGTATCGGATGTTAGGAAAAA 59.702 40.000 0.00 0.00 0.00 1.94
228 229 6.016276 GCCATGTATCGGATGTTAGGAAAAAT 60.016 38.462 0.00 0.00 0.00 1.82
229 230 7.174253 GCCATGTATCGGATGTTAGGAAAAATA 59.826 37.037 0.00 0.00 0.00 1.40
230 231 9.231297 CCATGTATCGGATGTTAGGAAAAATAT 57.769 33.333 0.00 0.00 0.00 1.28
232 233 9.793259 ATGTATCGGATGTTAGGAAAAATATGT 57.207 29.630 0.00 0.00 0.00 2.29
233 234 9.621629 TGTATCGGATGTTAGGAAAAATATGTT 57.378 29.630 0.00 0.00 0.00 2.71
236 237 8.568676 TCGGATGTTAGGAAAAATATGTTTGA 57.431 30.769 0.00 0.00 0.00 2.69
237 238 9.015367 TCGGATGTTAGGAAAAATATGTTTGAA 57.985 29.630 0.00 0.00 0.00 2.69
238 239 9.801873 CGGATGTTAGGAAAAATATGTTTGAAT 57.198 29.630 0.00 0.00 0.00 2.57
245 246 8.767478 AGGAAAAATATGTTTGAATGAAGCAG 57.233 30.769 0.00 0.00 0.00 4.24
246 247 7.332678 AGGAAAAATATGTTTGAATGAAGCAGC 59.667 33.333 0.00 0.00 0.00 5.25
247 248 6.636666 AAAATATGTTTGAATGAAGCAGCG 57.363 33.333 0.00 0.00 0.00 5.18
248 249 2.642139 ATGTTTGAATGAAGCAGCGG 57.358 45.000 0.00 0.00 0.00 5.52
249 250 0.597568 TGTTTGAATGAAGCAGCGGG 59.402 50.000 0.00 0.00 0.00 6.13
250 251 0.881118 GTTTGAATGAAGCAGCGGGA 59.119 50.000 0.00 0.00 0.00 5.14
251 252 1.474077 GTTTGAATGAAGCAGCGGGAT 59.526 47.619 0.00 0.00 0.00 3.85
252 253 1.382522 TTGAATGAAGCAGCGGGATC 58.617 50.000 0.00 0.00 0.00 3.36
253 254 0.464373 TGAATGAAGCAGCGGGATCC 60.464 55.000 1.92 1.92 0.00 3.36
254 255 0.179034 GAATGAAGCAGCGGGATCCT 60.179 55.000 12.58 0.00 0.00 3.24
255 256 0.179034 AATGAAGCAGCGGGATCCTC 60.179 55.000 12.58 4.01 0.00 3.71
256 257 1.053264 ATGAAGCAGCGGGATCCTCT 61.053 55.000 12.58 6.48 0.00 3.69
257 258 0.397114 TGAAGCAGCGGGATCCTCTA 60.397 55.000 12.58 0.00 0.00 2.43
258 259 0.032815 GAAGCAGCGGGATCCTCTAC 59.967 60.000 12.58 4.31 0.00 2.59
259 260 0.687757 AAGCAGCGGGATCCTCTACA 60.688 55.000 12.58 0.00 0.00 2.74
260 261 0.687757 AGCAGCGGGATCCTCTACAA 60.688 55.000 12.58 0.00 0.00 2.41
261 262 0.249657 GCAGCGGGATCCTCTACAAG 60.250 60.000 12.58 0.00 0.00 3.16
263 264 0.760945 AGCGGGATCCTCTACAAGGG 60.761 60.000 12.58 0.00 46.23 3.95
264 265 1.749033 CGGGATCCTCTACAAGGGC 59.251 63.158 12.58 0.00 46.23 5.19
265 266 1.759459 CGGGATCCTCTACAAGGGCC 61.759 65.000 12.58 0.00 46.23 5.80
266 267 1.749033 GGATCCTCTACAAGGGCCG 59.251 63.158 3.84 0.00 46.23 6.13
267 268 1.749033 GATCCTCTACAAGGGCCGG 59.251 63.158 0.00 0.00 46.23 6.13
268 269 1.759459 GATCCTCTACAAGGGCCGGG 61.759 65.000 2.18 0.00 46.23 5.73
269 270 2.547123 ATCCTCTACAAGGGCCGGGT 62.547 60.000 2.18 8.18 46.23 5.28
270 271 2.584608 CTCTACAAGGGCCGGGTG 59.415 66.667 2.18 8.17 0.00 4.61
271 272 1.987855 CTCTACAAGGGCCGGGTGA 60.988 63.158 2.18 7.63 0.00 4.02
272 273 1.306654 TCTACAAGGGCCGGGTGAT 60.307 57.895 2.18 0.84 0.00 3.06
273 274 0.912487 TCTACAAGGGCCGGGTGATT 60.912 55.000 2.18 0.00 0.00 2.57
274 275 0.834612 CTACAAGGGCCGGGTGATTA 59.165 55.000 2.18 0.00 0.00 1.75
275 276 0.834612 TACAAGGGCCGGGTGATTAG 59.165 55.000 2.18 0.00 0.00 1.73
276 277 1.152963 CAAGGGCCGGGTGATTAGG 60.153 63.158 2.18 0.00 0.00 2.69
277 278 2.383601 AAGGGCCGGGTGATTAGGG 61.384 63.158 2.18 0.00 0.00 3.53
278 279 2.770904 GGGCCGGGTGATTAGGGA 60.771 66.667 2.18 0.00 0.00 4.20
279 280 2.819284 GGGCCGGGTGATTAGGGAG 61.819 68.421 2.18 0.00 0.00 4.30
280 281 1.764854 GGCCGGGTGATTAGGGAGA 60.765 63.158 2.18 0.00 0.00 3.71
281 282 1.342672 GGCCGGGTGATTAGGGAGAA 61.343 60.000 2.18 0.00 0.00 2.87
282 283 0.544697 GCCGGGTGATTAGGGAGAAA 59.455 55.000 2.18 0.00 0.00 2.52
283 284 1.064979 GCCGGGTGATTAGGGAGAAAA 60.065 52.381 2.18 0.00 0.00 2.29
284 285 2.619590 GCCGGGTGATTAGGGAGAAAAA 60.620 50.000 2.18 0.00 0.00 1.94
285 286 3.279434 CCGGGTGATTAGGGAGAAAAAG 58.721 50.000 0.00 0.00 0.00 2.27
286 287 3.308188 CCGGGTGATTAGGGAGAAAAAGT 60.308 47.826 0.00 0.00 0.00 2.66
287 288 3.689649 CGGGTGATTAGGGAGAAAAAGTG 59.310 47.826 0.00 0.00 0.00 3.16
288 289 4.663334 GGGTGATTAGGGAGAAAAAGTGT 58.337 43.478 0.00 0.00 0.00 3.55
289 290 4.459337 GGGTGATTAGGGAGAAAAAGTGTG 59.541 45.833 0.00 0.00 0.00 3.82
290 291 5.313712 GGTGATTAGGGAGAAAAAGTGTGA 58.686 41.667 0.00 0.00 0.00 3.58
291 292 5.946377 GGTGATTAGGGAGAAAAAGTGTGAT 59.054 40.000 0.00 0.00 0.00 3.06
292 293 6.094186 GGTGATTAGGGAGAAAAAGTGTGATC 59.906 42.308 0.00 0.00 0.00 2.92
293 294 6.094186 GTGATTAGGGAGAAAAAGTGTGATCC 59.906 42.308 0.00 0.00 0.00 3.36
294 295 3.059352 AGGGAGAAAAAGTGTGATCCG 57.941 47.619 0.00 0.00 0.00 4.18
295 296 2.637872 AGGGAGAAAAAGTGTGATCCGA 59.362 45.455 0.00 0.00 0.00 4.55
296 297 3.264450 AGGGAGAAAAAGTGTGATCCGAT 59.736 43.478 0.00 0.00 0.00 4.18
297 298 3.375299 GGGAGAAAAAGTGTGATCCGATG 59.625 47.826 0.00 0.00 0.00 3.84
298 299 4.253685 GGAGAAAAAGTGTGATCCGATGA 58.746 43.478 0.00 0.00 0.00 2.92
299 300 4.695455 GGAGAAAAAGTGTGATCCGATGAA 59.305 41.667 0.00 0.00 0.00 2.57
300 301 5.355350 GGAGAAAAAGTGTGATCCGATGAAT 59.645 40.000 0.00 0.00 0.00 2.57
301 302 6.187125 AGAAAAAGTGTGATCCGATGAATG 57.813 37.500 0.00 0.00 0.00 2.67
302 303 5.939883 AGAAAAAGTGTGATCCGATGAATGA 59.060 36.000 0.00 0.00 0.00 2.57
303 304 6.430925 AGAAAAAGTGTGATCCGATGAATGAA 59.569 34.615 0.00 0.00 0.00 2.57
304 305 5.808042 AAAGTGTGATCCGATGAATGAAG 57.192 39.130 0.00 0.00 0.00 3.02
305 306 3.201290 AGTGTGATCCGATGAATGAAGC 58.799 45.455 0.00 0.00 0.00 3.86
306 307 3.118482 AGTGTGATCCGATGAATGAAGCT 60.118 43.478 0.00 0.00 0.00 3.74
307 308 3.002042 GTGTGATCCGATGAATGAAGCTG 59.998 47.826 0.00 0.00 0.00 4.24
308 309 3.118665 TGTGATCCGATGAATGAAGCTGA 60.119 43.478 0.00 0.00 0.00 4.26
309 310 3.873361 GTGATCCGATGAATGAAGCTGAA 59.127 43.478 0.00 0.00 0.00 3.02
310 311 4.333649 GTGATCCGATGAATGAAGCTGAAA 59.666 41.667 0.00 0.00 0.00 2.69
311 312 4.943093 TGATCCGATGAATGAAGCTGAAAA 59.057 37.500 0.00 0.00 0.00 2.29
312 313 5.415389 TGATCCGATGAATGAAGCTGAAAAA 59.585 36.000 0.00 0.00 0.00 1.94
313 314 5.300969 TCCGATGAATGAAGCTGAAAAAG 57.699 39.130 0.00 0.00 0.00 2.27
314 315 4.761739 TCCGATGAATGAAGCTGAAAAAGT 59.238 37.500 0.00 0.00 0.00 2.66
315 316 5.241506 TCCGATGAATGAAGCTGAAAAAGTT 59.758 36.000 0.00 0.00 0.00 2.66
316 317 5.344128 CCGATGAATGAAGCTGAAAAAGTTG 59.656 40.000 0.00 0.00 0.00 3.16
317 318 6.144854 CGATGAATGAAGCTGAAAAAGTTGA 58.855 36.000 0.00 0.00 0.00 3.18
318 319 6.638063 CGATGAATGAAGCTGAAAAAGTTGAA 59.362 34.615 0.00 0.00 0.00 2.69
319 320 7.149015 CGATGAATGAAGCTGAAAAAGTTGAAG 60.149 37.037 0.00 0.00 0.00 3.02
320 321 6.866480 TGAATGAAGCTGAAAAAGTTGAAGT 58.134 32.000 0.00 0.00 0.00 3.01
321 322 6.753279 TGAATGAAGCTGAAAAAGTTGAAGTG 59.247 34.615 0.00 0.00 0.00 3.16
325 326 5.643379 AGCTGAAAAAGTTGAAGTGAACA 57.357 34.783 0.00 0.00 0.00 3.18
326 327 5.644644 AGCTGAAAAAGTTGAAGTGAACAG 58.355 37.500 0.00 0.00 0.00 3.16
336 337 2.288666 GAAGTGAACAGGTTGCTCACA 58.711 47.619 13.24 0.00 43.74 3.58
395 396 2.431057 CACGGGCAAAGATAGTACTCCT 59.569 50.000 0.00 0.00 0.00 3.69
429 893 5.251700 AGAAAAGGGTCATGGTTCATCTACT 59.748 40.000 0.00 0.00 0.00 2.57
472 936 3.258971 TGTTCAACCTTTTTGCCTTGG 57.741 42.857 0.00 0.00 0.00 3.61
500 966 6.590292 TCGTGAGGAGAAGAAATGTCATTAAC 59.410 38.462 0.00 0.00 0.00 2.01
503 969 7.604164 GTGAGGAGAAGAAATGTCATTAACAGA 59.396 37.037 0.00 0.00 42.37 3.41
534 1000 2.202756 CGGGCTACGGCTTCTGTC 60.203 66.667 0.00 0.00 39.42 3.51
538 1004 1.592223 GCTACGGCTTCTGTCCTGT 59.408 57.895 0.00 0.00 35.22 4.00
539 1005 0.458716 GCTACGGCTTCTGTCCTGTC 60.459 60.000 0.00 0.00 35.22 3.51
540 1006 1.178276 CTACGGCTTCTGTCCTGTCT 58.822 55.000 0.00 0.00 0.00 3.41
541 1007 0.888619 TACGGCTTCTGTCCTGTCTG 59.111 55.000 0.00 0.00 0.00 3.51
542 1008 1.115930 ACGGCTTCTGTCCTGTCTGT 61.116 55.000 0.00 0.00 0.00 3.41
654 1132 1.591703 GTGGTCGCTCATCCTGTGA 59.408 57.895 0.00 0.00 35.05 3.58
718 1201 1.519455 GCCTACGAAGACGCATGCT 60.519 57.895 17.13 2.38 43.96 3.79
719 1202 1.483424 GCCTACGAAGACGCATGCTC 61.483 60.000 17.13 12.16 43.96 4.26
727 1488 4.101448 ACGCATGCTCCCCTCACC 62.101 66.667 17.13 0.00 0.00 4.02
913 1677 2.103736 TGCTCGCTCGCATCTGAG 59.896 61.111 0.00 0.00 39.05 3.35
914 1678 2.657944 GCTCGCTCGCATCTGAGG 60.658 66.667 0.00 0.00 36.47 3.86
915 1679 3.114650 CTCGCTCGCATCTGAGGA 58.885 61.111 0.00 0.00 36.47 3.71
916 1680 1.008652 CTCGCTCGCATCTGAGGAG 60.009 63.158 0.00 0.00 36.47 3.69
917 1681 2.027314 CGCTCGCATCTGAGGAGG 59.973 66.667 0.00 0.00 36.47 4.30
997 1762 1.375326 GTCTTTTCCCCTCCGCTGT 59.625 57.895 0.00 0.00 0.00 4.40
1563 2337 1.660614 CGGATGATGCTCGTCTACGAC 60.661 57.143 0.14 0.20 44.22 4.34
1710 2484 2.824041 GTGCATCCGCCGGTGATT 60.824 61.111 18.79 0.00 37.32 2.57
1782 2556 0.813210 GCCTCTCAGATTTCGGGCTG 60.813 60.000 0.00 0.00 36.96 4.85
1883 2657 0.601558 GGTGGATGCCATGATGATGC 59.398 55.000 0.00 0.00 35.28 3.91
1968 2745 1.849039 CCAGAGGATGATGAGGGGTTT 59.151 52.381 0.00 0.00 0.00 3.27
2214 2991 1.934463 CGATTGGATTTCCGGAGCG 59.066 57.895 3.34 0.00 39.43 5.03
2220 2997 0.594284 GGATTTCCGGAGCGTCTACG 60.594 60.000 3.34 4.72 37.59 3.51
2324 3101 0.820871 ACCAAGAAGCAAAAACGGCA 59.179 45.000 0.00 0.00 0.00 5.69
2897 3680 2.203126 CCCATCAAGCGAGGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
3042 3827 4.256920 AGATGCAAATGGTAGTGTCAGTC 58.743 43.478 0.00 0.00 0.00 3.51
3167 3953 5.324409 TGATAAGAACAGCAATTCCCAGTT 58.676 37.500 0.00 0.00 0.00 3.16
3185 3971 9.717942 TTCCCAGTTTAACCATTTAATTGATTG 57.282 29.630 0.00 0.00 0.00 2.67
3223 4013 5.499313 TGATGATGGATAAAGCAGTCACAA 58.501 37.500 0.00 0.00 0.00 3.33
3225 4015 7.281841 TGATGATGGATAAAGCAGTCACAATA 58.718 34.615 0.00 0.00 0.00 1.90
3232 4022 9.851686 TGGATAAAGCAGTCACAATATCTATTT 57.148 29.630 0.00 0.00 0.00 1.40
3276 4068 9.059260 TCTCCATTAATCACATACACAATCATG 57.941 33.333 0.00 0.00 0.00 3.07
3292 4084 8.097038 ACACAATCATGGTATTTCTAGCGATAT 58.903 33.333 0.00 0.00 0.00 1.63
3296 4088 9.539825 AATCATGGTATTTCTAGCGATATGATC 57.460 33.333 0.00 0.00 30.70 2.92
3298 4090 8.699130 TCATGGTATTTCTAGCGATATGATCAT 58.301 33.333 13.81 13.81 0.00 2.45
3299 4091 9.322773 CATGGTATTTCTAGCGATATGATCATT 57.677 33.333 14.65 1.69 0.00 2.57
3300 4092 8.707938 TGGTATTTCTAGCGATATGATCATTG 57.292 34.615 14.65 5.75 0.00 2.82
3301 4093 7.765819 TGGTATTTCTAGCGATATGATCATTGG 59.234 37.037 14.65 4.82 0.00 3.16
3302 4094 7.981789 GGTATTTCTAGCGATATGATCATTGGA 59.018 37.037 14.65 0.00 0.00 3.53
3303 4095 9.371136 GTATTTCTAGCGATATGATCATTGGAA 57.629 33.333 14.65 6.29 0.00 3.53
3304 4096 8.853077 ATTTCTAGCGATATGATCATTGGAAA 57.147 30.769 14.65 14.53 31.49 3.13
3305 4097 8.853077 TTTCTAGCGATATGATCATTGGAAAT 57.147 30.769 14.65 0.00 0.00 2.17
3339 4132 1.935873 CATGATACCAGCAAGACCACG 59.064 52.381 0.00 0.00 0.00 4.94
3357 4150 1.074727 ACGGGATGTTGTGAATTGGGA 59.925 47.619 0.00 0.00 0.00 4.37
3362 4155 4.321974 GGGATGTTGTGAATTGGGAAGTTC 60.322 45.833 0.00 0.00 0.00 3.01
3563 4356 9.084533 ACTTTTCTGGAGCTAGTATATTCTAGG 57.915 37.037 15.73 2.18 38.17 3.02
3564 4357 9.084533 CTTTTCTGGAGCTAGTATATTCTAGGT 57.915 37.037 17.80 17.80 46.82 3.08
3568 4361 8.542080 TCTGGAGCTAGTATATTCTAGGTAGTC 58.458 40.741 17.79 12.23 45.04 2.59
3574 4367 5.878627 AGTATATTCTAGGTAGTCGCTGGT 58.121 41.667 0.00 0.00 0.00 4.00
3822 4626 7.390823 TCTGGAATACATATTATGCGCCTTTA 58.609 34.615 4.18 0.00 0.00 1.85
4003 4836 6.528423 CACTGTAATGGAAGTCGACTAGAAAG 59.472 42.308 20.39 10.77 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.096169 CCGTTTTCAACAAATACACACACA 58.904 37.500 0.00 0.00 0.00 3.72
2 3 4.027214 GCCGTTTTCAACAAATACACACAC 60.027 41.667 0.00 0.00 0.00 3.82
3 4 4.106197 GCCGTTTTCAACAAATACACACA 58.894 39.130 0.00 0.00 0.00 3.72
6 7 2.722116 CCGCCGTTTTCAACAAATACAC 59.278 45.455 0.00 0.00 0.00 2.90
7 8 2.859032 GCCGCCGTTTTCAACAAATACA 60.859 45.455 0.00 0.00 0.00 2.29
8 9 1.717113 GCCGCCGTTTTCAACAAATAC 59.283 47.619 0.00 0.00 0.00 1.89
9 10 1.337071 TGCCGCCGTTTTCAACAAATA 59.663 42.857 0.00 0.00 0.00 1.40
10 11 0.103208 TGCCGCCGTTTTCAACAAAT 59.897 45.000 0.00 0.00 0.00 2.32
11 12 0.108804 TTGCCGCCGTTTTCAACAAA 60.109 45.000 0.00 0.00 0.00 2.83
12 13 0.526524 CTTGCCGCCGTTTTCAACAA 60.527 50.000 0.00 0.00 0.00 2.83
13 14 1.064946 CTTGCCGCCGTTTTCAACA 59.935 52.632 0.00 0.00 0.00 3.33
14 15 2.300066 GCTTGCCGCCGTTTTCAAC 61.300 57.895 0.00 0.00 0.00 3.18
15 16 2.026879 GCTTGCCGCCGTTTTCAA 59.973 55.556 0.00 0.00 0.00 2.69
36 37 1.172180 ATCCATATTTGCCCGCGTGG 61.172 55.000 8.42 8.42 37.09 4.94
37 38 0.238289 GATCCATATTTGCCCGCGTG 59.762 55.000 4.92 0.00 0.00 5.34
38 39 1.227999 CGATCCATATTTGCCCGCGT 61.228 55.000 4.92 0.00 0.00 6.01
39 40 1.497278 CGATCCATATTTGCCCGCG 59.503 57.895 0.00 0.00 0.00 6.46
40 41 1.875963 CCGATCCATATTTGCCCGC 59.124 57.895 0.00 0.00 0.00 6.13
41 42 1.875963 GCCGATCCATATTTGCCCG 59.124 57.895 0.00 0.00 0.00 6.13
42 43 0.889186 ACGCCGATCCATATTTGCCC 60.889 55.000 0.00 0.00 0.00 5.36
43 44 0.951558 AACGCCGATCCATATTTGCC 59.048 50.000 0.00 0.00 0.00 4.52
44 45 1.334960 CCAACGCCGATCCATATTTGC 60.335 52.381 0.00 0.00 0.00 3.68
45 46 1.266718 CCCAACGCCGATCCATATTTG 59.733 52.381 0.00 0.00 0.00 2.32
46 47 1.604604 CCCAACGCCGATCCATATTT 58.395 50.000 0.00 0.00 0.00 1.40
47 48 0.889186 GCCCAACGCCGATCCATATT 60.889 55.000 0.00 0.00 0.00 1.28
48 49 1.302511 GCCCAACGCCGATCCATAT 60.303 57.895 0.00 0.00 0.00 1.78
49 50 2.110213 GCCCAACGCCGATCCATA 59.890 61.111 0.00 0.00 0.00 2.74
50 51 4.108299 TGCCCAACGCCGATCCAT 62.108 61.111 0.00 0.00 36.24 3.41
53 54 3.799755 GTGTGCCCAACGCCGATC 61.800 66.667 0.00 0.00 36.24 3.69
54 55 4.329545 AGTGTGCCCAACGCCGAT 62.330 61.111 0.00 0.00 40.37 4.18
65 66 2.200170 GATTTGGGTCGGCAGTGTGC 62.200 60.000 0.00 0.00 44.08 4.57
66 67 0.888736 TGATTTGGGTCGGCAGTGTG 60.889 55.000 0.00 0.00 0.00 3.82
67 68 0.038166 ATGATTTGGGTCGGCAGTGT 59.962 50.000 0.00 0.00 0.00 3.55
68 69 2.036958 TATGATTTGGGTCGGCAGTG 57.963 50.000 0.00 0.00 0.00 3.66
69 70 2.752903 GTTTATGATTTGGGTCGGCAGT 59.247 45.455 0.00 0.00 0.00 4.40
70 71 2.752354 TGTTTATGATTTGGGTCGGCAG 59.248 45.455 0.00 0.00 0.00 4.85
71 72 2.752354 CTGTTTATGATTTGGGTCGGCA 59.248 45.455 0.00 0.00 0.00 5.69
72 73 2.099098 CCTGTTTATGATTTGGGTCGGC 59.901 50.000 0.00 0.00 0.00 5.54
73 74 3.377172 GTCCTGTTTATGATTTGGGTCGG 59.623 47.826 0.00 0.00 0.00 4.79
74 75 3.063452 CGTCCTGTTTATGATTTGGGTCG 59.937 47.826 0.00 0.00 0.00 4.79
75 76 3.377172 CCGTCCTGTTTATGATTTGGGTC 59.623 47.826 0.00 0.00 0.00 4.46
76 77 3.009695 TCCGTCCTGTTTATGATTTGGGT 59.990 43.478 0.00 0.00 0.00 4.51
77 78 3.377172 GTCCGTCCTGTTTATGATTTGGG 59.623 47.826 0.00 0.00 0.00 4.12
78 79 3.063452 CGTCCGTCCTGTTTATGATTTGG 59.937 47.826 0.00 0.00 0.00 3.28
79 80 3.485216 GCGTCCGTCCTGTTTATGATTTG 60.485 47.826 0.00 0.00 0.00 2.32
80 81 2.676342 GCGTCCGTCCTGTTTATGATTT 59.324 45.455 0.00 0.00 0.00 2.17
81 82 2.277084 GCGTCCGTCCTGTTTATGATT 58.723 47.619 0.00 0.00 0.00 2.57
82 83 1.472728 GGCGTCCGTCCTGTTTATGAT 60.473 52.381 0.00 0.00 0.00 2.45
83 84 0.108520 GGCGTCCGTCCTGTTTATGA 60.109 55.000 0.00 0.00 0.00 2.15
84 85 1.418342 CGGCGTCCGTCCTGTTTATG 61.418 60.000 9.69 0.00 42.73 1.90
85 86 1.153706 CGGCGTCCGTCCTGTTTAT 60.154 57.895 9.69 0.00 42.73 1.40
86 87 2.259204 CGGCGTCCGTCCTGTTTA 59.741 61.111 9.69 0.00 42.73 2.01
104 105 3.047877 GTCCGTTTGGGTCGGCTG 61.048 66.667 0.00 0.00 46.49 4.85
105 106 2.612095 TTTGTCCGTTTGGGTCGGCT 62.612 55.000 0.00 0.00 46.49 5.52
106 107 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
108 109 1.534385 GGTTTTTGTCCGTTTGGGTCG 60.534 52.381 0.00 0.00 37.00 4.79
109 110 1.752498 AGGTTTTTGTCCGTTTGGGTC 59.248 47.619 0.00 0.00 37.00 4.46
110 111 1.855295 AGGTTTTTGTCCGTTTGGGT 58.145 45.000 0.00 0.00 37.00 4.51
111 112 2.482316 GGAAGGTTTTTGTCCGTTTGGG 60.482 50.000 0.00 0.00 35.24 4.12
112 113 2.816689 GGAAGGTTTTTGTCCGTTTGG 58.183 47.619 0.00 0.00 0.00 3.28
118 119 2.482316 CCCAAACGGAAGGTTTTTGTCC 60.482 50.000 0.00 0.00 46.52 4.02
119 120 2.166870 ACCCAAACGGAAGGTTTTTGTC 59.833 45.455 0.00 0.00 46.52 3.18
120 121 2.166870 GACCCAAACGGAAGGTTTTTGT 59.833 45.455 0.00 0.00 46.52 2.83
121 122 2.796735 CGACCCAAACGGAAGGTTTTTG 60.797 50.000 0.00 0.00 46.52 2.44
122 123 1.406180 CGACCCAAACGGAAGGTTTTT 59.594 47.619 0.00 0.00 46.52 1.94
123 124 1.026584 CGACCCAAACGGAAGGTTTT 58.973 50.000 0.00 0.00 46.52 2.43
125 126 4.468007 CGACCCAAACGGAAGGTT 57.532 55.556 0.00 0.00 45.95 3.50
132 133 3.273834 AACGCACCGACCCAAACG 61.274 61.111 0.00 0.00 0.00 3.60
133 134 1.716826 TTCAACGCACCGACCCAAAC 61.717 55.000 0.00 0.00 0.00 2.93
134 135 1.440938 CTTCAACGCACCGACCCAAA 61.441 55.000 0.00 0.00 0.00 3.28
135 136 1.890041 CTTCAACGCACCGACCCAA 60.890 57.895 0.00 0.00 0.00 4.12
136 137 2.280524 CTTCAACGCACCGACCCA 60.281 61.111 0.00 0.00 0.00 4.51
137 138 1.890510 AACTTCAACGCACCGACCC 60.891 57.895 0.00 0.00 0.00 4.46
138 139 1.278637 CAACTTCAACGCACCGACC 59.721 57.895 0.00 0.00 0.00 4.79
139 140 1.368850 GCAACTTCAACGCACCGAC 60.369 57.895 0.00 0.00 0.00 4.79
140 141 1.495584 GAGCAACTTCAACGCACCGA 61.496 55.000 0.00 0.00 0.00 4.69
141 142 1.082756 GAGCAACTTCAACGCACCG 60.083 57.895 0.00 0.00 0.00 4.94
142 143 0.663153 AAGAGCAACTTCAACGCACC 59.337 50.000 0.00 0.00 32.91 5.01
143 144 2.659291 CGTAAGAGCAACTTCAACGCAC 60.659 50.000 0.00 0.00 39.72 5.34
144 145 1.525197 CGTAAGAGCAACTTCAACGCA 59.475 47.619 0.00 0.00 39.72 5.24
145 146 2.212922 CGTAAGAGCAACTTCAACGC 57.787 50.000 0.00 0.00 39.72 4.84
146 147 1.136336 GGCGTAAGAGCAACTTCAACG 60.136 52.381 11.73 11.73 41.00 4.10
147 148 1.871039 TGGCGTAAGAGCAACTTCAAC 59.129 47.619 0.00 0.00 39.72 3.18
148 149 2.248280 TGGCGTAAGAGCAACTTCAA 57.752 45.000 0.00 0.00 39.72 2.69
149 150 2.076100 CATGGCGTAAGAGCAACTTCA 58.924 47.619 0.00 0.00 39.72 3.02
150 151 1.202076 GCATGGCGTAAGAGCAACTTC 60.202 52.381 0.00 0.00 39.72 3.01
151 152 0.804989 GCATGGCGTAAGAGCAACTT 59.195 50.000 0.00 2.10 42.04 2.66
152 153 0.321564 TGCATGGCGTAAGAGCAACT 60.322 50.000 0.00 0.00 43.02 3.16
153 154 0.179189 GTGCATGGCGTAAGAGCAAC 60.179 55.000 0.00 0.00 43.02 4.17
154 155 0.605050 TGTGCATGGCGTAAGAGCAA 60.605 50.000 0.00 0.00 43.02 3.91
155 156 0.605050 TTGTGCATGGCGTAAGAGCA 60.605 50.000 0.00 0.00 43.02 4.26
156 157 0.734889 ATTGTGCATGGCGTAAGAGC 59.265 50.000 0.00 0.00 43.02 4.09
157 158 1.532505 GCATTGTGCATGGCGTAAGAG 60.533 52.381 0.00 0.00 44.26 2.85
158 159 0.451383 GCATTGTGCATGGCGTAAGA 59.549 50.000 0.00 0.00 44.26 2.10
159 160 2.948093 GCATTGTGCATGGCGTAAG 58.052 52.632 0.00 0.00 44.26 2.34
169 170 1.737816 CTGGGGCTATGCATTGTGC 59.262 57.895 3.54 7.50 45.29 4.57
170 171 1.111116 CCCTGGGGCTATGCATTGTG 61.111 60.000 3.54 0.00 0.00 3.33
171 172 1.231068 CCCTGGGGCTATGCATTGT 59.769 57.895 3.54 0.00 0.00 2.71
172 173 1.111116 CACCCTGGGGCTATGCATTG 61.111 60.000 18.88 3.55 39.32 2.82
173 174 1.231068 CACCCTGGGGCTATGCATT 59.769 57.895 18.88 0.00 39.32 3.56
174 175 1.070127 ATCACCCTGGGGCTATGCAT 61.070 55.000 18.88 3.79 39.32 3.96
175 176 1.697394 ATCACCCTGGGGCTATGCA 60.697 57.895 18.88 0.00 39.32 3.96
176 177 1.228367 CATCACCCTGGGGCTATGC 60.228 63.158 18.88 0.00 39.32 3.14
177 178 1.228367 GCATCACCCTGGGGCTATG 60.228 63.158 18.88 17.03 39.32 2.23
178 179 2.464403 GGCATCACCCTGGGGCTAT 61.464 63.158 18.88 4.24 39.32 2.97
179 180 3.096495 GGCATCACCCTGGGGCTA 61.096 66.667 18.88 1.65 39.32 3.93
188 189 1.153524 TGGCATATGGGGCATCACC 59.846 57.895 4.56 0.00 38.55 4.02
189 190 4.927557 TGGCATATGGGGCATCAC 57.072 55.556 4.56 0.00 38.55 3.06
194 195 1.382522 CGATACATGGCATATGGGGC 58.617 55.000 0.00 0.00 0.00 5.80
195 196 1.559219 TCCGATACATGGCATATGGGG 59.441 52.381 0.00 0.00 30.87 4.96
196 197 3.208594 CATCCGATACATGGCATATGGG 58.791 50.000 0.00 2.06 31.09 4.00
197 198 3.877559 ACATCCGATACATGGCATATGG 58.122 45.455 0.00 0.00 0.00 2.74
198 199 5.525012 CCTAACATCCGATACATGGCATATG 59.475 44.000 0.00 0.79 0.00 1.78
199 200 5.425217 TCCTAACATCCGATACATGGCATAT 59.575 40.000 0.00 0.00 0.00 1.78
200 201 4.775253 TCCTAACATCCGATACATGGCATA 59.225 41.667 0.00 0.00 0.00 3.14
201 202 3.582647 TCCTAACATCCGATACATGGCAT 59.417 43.478 0.00 0.00 0.00 4.40
202 203 2.969262 TCCTAACATCCGATACATGGCA 59.031 45.455 0.00 0.00 0.00 4.92
203 204 3.678056 TCCTAACATCCGATACATGGC 57.322 47.619 0.00 0.00 0.00 4.40
204 205 6.935741 TTTTTCCTAACATCCGATACATGG 57.064 37.500 0.00 0.00 0.00 3.66
206 207 9.793259 ACATATTTTTCCTAACATCCGATACAT 57.207 29.630 0.00 0.00 0.00 2.29
207 208 9.621629 AACATATTTTTCCTAACATCCGATACA 57.378 29.630 0.00 0.00 0.00 2.29
210 211 9.184523 TCAAACATATTTTTCCTAACATCCGAT 57.815 29.630 0.00 0.00 0.00 4.18
211 212 8.568676 TCAAACATATTTTTCCTAACATCCGA 57.431 30.769 0.00 0.00 0.00 4.55
212 213 9.801873 ATTCAAACATATTTTTCCTAACATCCG 57.198 29.630 0.00 0.00 0.00 4.18
219 220 9.859427 CTGCTTCATTCAAACATATTTTTCCTA 57.141 29.630 0.00 0.00 0.00 2.94
220 221 7.332678 GCTGCTTCATTCAAACATATTTTTCCT 59.667 33.333 0.00 0.00 0.00 3.36
221 222 7.458677 GCTGCTTCATTCAAACATATTTTTCC 58.541 34.615 0.00 0.00 0.00 3.13
222 223 7.168796 CGCTGCTTCATTCAAACATATTTTTC 58.831 34.615 0.00 0.00 0.00 2.29
223 224 6.091169 CCGCTGCTTCATTCAAACATATTTTT 59.909 34.615 0.00 0.00 0.00 1.94
224 225 5.577945 CCGCTGCTTCATTCAAACATATTTT 59.422 36.000 0.00 0.00 0.00 1.82
225 226 5.104374 CCGCTGCTTCATTCAAACATATTT 58.896 37.500 0.00 0.00 0.00 1.40
226 227 4.440525 CCCGCTGCTTCATTCAAACATATT 60.441 41.667 0.00 0.00 0.00 1.28
227 228 3.067180 CCCGCTGCTTCATTCAAACATAT 59.933 43.478 0.00 0.00 0.00 1.78
228 229 2.423185 CCCGCTGCTTCATTCAAACATA 59.577 45.455 0.00 0.00 0.00 2.29
229 230 1.203052 CCCGCTGCTTCATTCAAACAT 59.797 47.619 0.00 0.00 0.00 2.71
230 231 0.597568 CCCGCTGCTTCATTCAAACA 59.402 50.000 0.00 0.00 0.00 2.83
231 232 0.881118 TCCCGCTGCTTCATTCAAAC 59.119 50.000 0.00 0.00 0.00 2.93
232 233 1.745087 GATCCCGCTGCTTCATTCAAA 59.255 47.619 0.00 0.00 0.00 2.69
233 234 1.382522 GATCCCGCTGCTTCATTCAA 58.617 50.000 0.00 0.00 0.00 2.69
234 235 0.464373 GGATCCCGCTGCTTCATTCA 60.464 55.000 0.00 0.00 0.00 2.57
235 236 0.179034 AGGATCCCGCTGCTTCATTC 60.179 55.000 8.55 0.00 0.00 2.67
236 237 0.179034 GAGGATCCCGCTGCTTCATT 60.179 55.000 8.55 0.00 0.00 2.57
237 238 1.053264 AGAGGATCCCGCTGCTTCAT 61.053 55.000 8.55 0.00 31.11 2.57
238 239 0.397114 TAGAGGATCCCGCTGCTTCA 60.397 55.000 8.55 0.00 33.89 3.02
239 240 0.032815 GTAGAGGATCCCGCTGCTTC 59.967 60.000 8.55 0.00 33.89 3.86
240 241 0.687757 TGTAGAGGATCCCGCTGCTT 60.688 55.000 8.55 0.00 37.03 3.91
241 242 0.687757 TTGTAGAGGATCCCGCTGCT 60.688 55.000 8.55 1.06 37.03 4.24
242 243 0.249657 CTTGTAGAGGATCCCGCTGC 60.250 60.000 8.55 10.58 36.70 5.25
243 244 3.976339 CTTGTAGAGGATCCCGCTG 57.024 57.895 8.55 0.00 33.89 5.18
252 253 2.687566 ACCCGGCCCTTGTAGAGG 60.688 66.667 0.00 0.00 45.86 3.69
253 254 1.338136 ATCACCCGGCCCTTGTAGAG 61.338 60.000 0.00 0.00 0.00 2.43
254 255 0.912487 AATCACCCGGCCCTTGTAGA 60.912 55.000 0.00 0.00 0.00 2.59
255 256 0.834612 TAATCACCCGGCCCTTGTAG 59.165 55.000 0.00 0.00 0.00 2.74
256 257 0.834612 CTAATCACCCGGCCCTTGTA 59.165 55.000 0.00 0.00 0.00 2.41
257 258 1.607612 CTAATCACCCGGCCCTTGT 59.392 57.895 0.00 0.00 0.00 3.16
258 259 1.152963 CCTAATCACCCGGCCCTTG 60.153 63.158 0.00 0.00 0.00 3.61
259 260 2.383601 CCCTAATCACCCGGCCCTT 61.384 63.158 0.00 0.00 0.00 3.95
260 261 2.772622 CCCTAATCACCCGGCCCT 60.773 66.667 0.00 0.00 0.00 5.19
261 262 2.770904 TCCCTAATCACCCGGCCC 60.771 66.667 0.00 0.00 0.00 5.80
262 263 1.342672 TTCTCCCTAATCACCCGGCC 61.343 60.000 0.00 0.00 0.00 6.13
263 264 0.544697 TTTCTCCCTAATCACCCGGC 59.455 55.000 0.00 0.00 0.00 6.13
264 265 3.279434 CTTTTTCTCCCTAATCACCCGG 58.721 50.000 0.00 0.00 0.00 5.73
265 266 3.689649 CACTTTTTCTCCCTAATCACCCG 59.310 47.826 0.00 0.00 0.00 5.28
266 267 4.459337 CACACTTTTTCTCCCTAATCACCC 59.541 45.833 0.00 0.00 0.00 4.61
267 268 5.313712 TCACACTTTTTCTCCCTAATCACC 58.686 41.667 0.00 0.00 0.00 4.02
268 269 6.094186 GGATCACACTTTTTCTCCCTAATCAC 59.906 42.308 0.00 0.00 0.00 3.06
269 270 6.180472 GGATCACACTTTTTCTCCCTAATCA 58.820 40.000 0.00 0.00 0.00 2.57
270 271 5.294552 CGGATCACACTTTTTCTCCCTAATC 59.705 44.000 0.00 0.00 0.00 1.75
271 272 5.045869 TCGGATCACACTTTTTCTCCCTAAT 60.046 40.000 0.00 0.00 0.00 1.73
272 273 4.285003 TCGGATCACACTTTTTCTCCCTAA 59.715 41.667 0.00 0.00 0.00 2.69
273 274 3.835978 TCGGATCACACTTTTTCTCCCTA 59.164 43.478 0.00 0.00 0.00 3.53
274 275 2.637872 TCGGATCACACTTTTTCTCCCT 59.362 45.455 0.00 0.00 0.00 4.20
275 276 3.053831 TCGGATCACACTTTTTCTCCC 57.946 47.619 0.00 0.00 0.00 4.30
276 277 4.253685 TCATCGGATCACACTTTTTCTCC 58.746 43.478 0.00 0.00 0.00 3.71
277 278 5.862924 TTCATCGGATCACACTTTTTCTC 57.137 39.130 0.00 0.00 0.00 2.87
278 279 5.939883 TCATTCATCGGATCACACTTTTTCT 59.060 36.000 0.00 0.00 0.00 2.52
279 280 6.182039 TCATTCATCGGATCACACTTTTTC 57.818 37.500 0.00 0.00 0.00 2.29
280 281 6.573664 TTCATTCATCGGATCACACTTTTT 57.426 33.333 0.00 0.00 0.00 1.94
281 282 5.392380 GCTTCATTCATCGGATCACACTTTT 60.392 40.000 0.00 0.00 0.00 2.27
282 283 4.095483 GCTTCATTCATCGGATCACACTTT 59.905 41.667 0.00 0.00 0.00 2.66
283 284 3.624861 GCTTCATTCATCGGATCACACTT 59.375 43.478 0.00 0.00 0.00 3.16
284 285 3.118482 AGCTTCATTCATCGGATCACACT 60.118 43.478 0.00 0.00 0.00 3.55
285 286 3.002042 CAGCTTCATTCATCGGATCACAC 59.998 47.826 0.00 0.00 0.00 3.82
286 287 3.118665 TCAGCTTCATTCATCGGATCACA 60.119 43.478 0.00 0.00 0.00 3.58
287 288 3.461061 TCAGCTTCATTCATCGGATCAC 58.539 45.455 0.00 0.00 0.00 3.06
288 289 3.825143 TCAGCTTCATTCATCGGATCA 57.175 42.857 0.00 0.00 0.00 2.92
289 290 5.490139 TTTTCAGCTTCATTCATCGGATC 57.510 39.130 0.00 0.00 0.00 3.36
290 291 5.416952 ACTTTTTCAGCTTCATTCATCGGAT 59.583 36.000 0.00 0.00 0.00 4.18
291 292 4.761739 ACTTTTTCAGCTTCATTCATCGGA 59.238 37.500 0.00 0.00 0.00 4.55
292 293 5.051891 ACTTTTTCAGCTTCATTCATCGG 57.948 39.130 0.00 0.00 0.00 4.18
293 294 6.144854 TCAACTTTTTCAGCTTCATTCATCG 58.855 36.000 0.00 0.00 0.00 3.84
294 295 7.650903 ACTTCAACTTTTTCAGCTTCATTCATC 59.349 33.333 0.00 0.00 0.00 2.92
295 296 7.437267 CACTTCAACTTTTTCAGCTTCATTCAT 59.563 33.333 0.00 0.00 0.00 2.57
296 297 6.753279 CACTTCAACTTTTTCAGCTTCATTCA 59.247 34.615 0.00 0.00 0.00 2.57
297 298 6.974622 TCACTTCAACTTTTTCAGCTTCATTC 59.025 34.615 0.00 0.00 0.00 2.67
298 299 6.866480 TCACTTCAACTTTTTCAGCTTCATT 58.134 32.000 0.00 0.00 0.00 2.57
299 300 6.455360 TCACTTCAACTTTTTCAGCTTCAT 57.545 33.333 0.00 0.00 0.00 2.57
300 301 5.895636 TCACTTCAACTTTTTCAGCTTCA 57.104 34.783 0.00 0.00 0.00 3.02
301 302 6.092748 TGTTCACTTCAACTTTTTCAGCTTC 58.907 36.000 0.00 0.00 0.00 3.86
302 303 6.024552 TGTTCACTTCAACTTTTTCAGCTT 57.975 33.333 0.00 0.00 0.00 3.74
303 304 5.393461 CCTGTTCACTTCAACTTTTTCAGCT 60.393 40.000 0.00 0.00 0.00 4.24
304 305 4.800471 CCTGTTCACTTCAACTTTTTCAGC 59.200 41.667 0.00 0.00 0.00 4.26
305 306 5.954335 ACCTGTTCACTTCAACTTTTTCAG 58.046 37.500 0.00 0.00 0.00 3.02
306 307 5.975693 ACCTGTTCACTTCAACTTTTTCA 57.024 34.783 0.00 0.00 0.00 2.69
307 308 5.062183 GCAACCTGTTCACTTCAACTTTTTC 59.938 40.000 0.00 0.00 0.00 2.29
308 309 4.929211 GCAACCTGTTCACTTCAACTTTTT 59.071 37.500 0.00 0.00 0.00 1.94
309 310 4.220602 AGCAACCTGTTCACTTCAACTTTT 59.779 37.500 0.00 0.00 0.00 2.27
310 311 3.763897 AGCAACCTGTTCACTTCAACTTT 59.236 39.130 0.00 0.00 0.00 2.66
311 312 3.356290 AGCAACCTGTTCACTTCAACTT 58.644 40.909 0.00 0.00 0.00 2.66
312 313 2.945668 GAGCAACCTGTTCACTTCAACT 59.054 45.455 0.00 0.00 0.00 3.16
313 314 2.682856 TGAGCAACCTGTTCACTTCAAC 59.317 45.455 0.00 0.00 32.63 3.18
314 315 2.997980 TGAGCAACCTGTTCACTTCAA 58.002 42.857 0.00 0.00 32.63 2.69
315 316 2.708216 TGAGCAACCTGTTCACTTCA 57.292 45.000 0.00 0.00 32.63 3.02
320 321 1.667236 CACTGTGAGCAACCTGTTCA 58.333 50.000 0.32 0.00 35.22 3.18
321 322 0.308993 GCACTGTGAGCAACCTGTTC 59.691 55.000 12.86 0.00 0.00 3.18
325 326 0.181114 TTGAGCACTGTGAGCAACCT 59.819 50.000 12.86 0.00 0.00 3.50
326 327 0.590195 CTTGAGCACTGTGAGCAACC 59.410 55.000 12.86 0.00 0.00 3.77
395 396 8.950007 ACCATGACCCTTTTCTTCTTAAAATA 57.050 30.769 0.00 0.00 0.00 1.40
404 405 5.003096 AGATGAACCATGACCCTTTTCTT 57.997 39.130 0.00 0.00 0.00 2.52
472 936 5.651530 TGACATTTCTTCTCCTCACGATAC 58.348 41.667 0.00 0.00 0.00 2.24
500 966 2.332277 CGTAGGACGGAGGGATCTG 58.668 63.158 0.00 0.00 38.08 2.90
520 986 0.458716 GACAGGACAGAAGCCGTAGC 60.459 60.000 0.00 0.00 40.32 3.58
529 995 1.332195 CACAGGACAGACAGGACAGA 58.668 55.000 0.00 0.00 0.00 3.41
534 1000 1.004080 CCAGCACAGGACAGACAGG 60.004 63.158 0.00 0.00 0.00 4.00
538 1004 4.007644 CCGCCAGCACAGGACAGA 62.008 66.667 0.00 0.00 0.00 3.41
654 1132 1.839747 TGGTCAACGTAGGCCTGGT 60.840 57.895 17.99 10.85 0.00 4.00
727 1488 3.110178 GTTCGTTGGAGCGGGTCG 61.110 66.667 0.53 0.00 0.00 4.79
911 1675 1.338136 TTCGCCATTCCTCCCTCCTC 61.338 60.000 0.00 0.00 0.00 3.71
912 1676 0.914417 TTTCGCCATTCCTCCCTCCT 60.914 55.000 0.00 0.00 0.00 3.69
913 1677 0.034477 TTTTCGCCATTCCTCCCTCC 60.034 55.000 0.00 0.00 0.00 4.30
914 1678 1.383523 CTTTTCGCCATTCCTCCCTC 58.616 55.000 0.00 0.00 0.00 4.30
915 1679 0.681243 GCTTTTCGCCATTCCTCCCT 60.681 55.000 0.00 0.00 0.00 4.20
916 1680 1.809869 GCTTTTCGCCATTCCTCCC 59.190 57.895 0.00 0.00 0.00 4.30
1710 2484 1.770658 CTAGGCTTGACATCCCCATGA 59.229 52.381 0.00 0.00 33.72 3.07
1782 2556 1.424493 CTTCAGACTTGATCCGCGCC 61.424 60.000 0.00 0.00 32.27 6.53
1883 2657 2.203056 TCTCGCCGGCCATTGATG 60.203 61.111 23.46 4.61 0.00 3.07
1888 2665 4.923942 CATGCTCTCGCCGGCCAT 62.924 66.667 23.46 15.34 34.43 4.40
1968 2745 2.065483 TGCATGTGAGGCAGTGGTA 58.935 52.632 0.00 0.00 36.11 3.25
2220 2997 1.229400 TGAGGTGGTAGGGGTGGTC 60.229 63.158 0.00 0.00 0.00 4.02
2324 3101 4.217118 CACTCTTTGACTTAGCAATTGCCT 59.783 41.667 26.45 15.86 43.38 4.75
2897 3680 1.129998 CACCAGAGAGCATTTCAAGCG 59.870 52.381 0.00 0.00 37.01 4.68
3193 3982 8.302515 ACTGCTTTATCCATCATCAAGATTTT 57.697 30.769 0.00 0.00 33.72 1.82
3206 3995 9.851686 AAATAGATATTGTGACTGCTTTATCCA 57.148 29.630 0.00 0.00 0.00 3.41
3223 4013 9.765795 CCGTTCTCCTCAAACTTAAATAGATAT 57.234 33.333 0.00 0.00 0.00 1.63
3225 4015 7.621796 ACCGTTCTCCTCAAACTTAAATAGAT 58.378 34.615 0.00 0.00 0.00 1.98
3232 4022 4.516365 GAGACCGTTCTCCTCAAACTTA 57.484 45.455 0.00 0.00 42.42 2.24
3242 4032 4.755411 TGTGATTAATGGAGACCGTTCTC 58.245 43.478 0.50 0.50 46.90 2.87
3248 4038 7.498900 TGATTGTGTATGTGATTAATGGAGACC 59.501 37.037 0.00 0.00 0.00 3.85
3276 4068 7.981789 TCCAATGATCATATCGCTAGAAATACC 59.018 37.037 9.04 0.00 0.00 2.73
3292 4084 9.602568 CATTGTATTCCAAATTTCCAATGATCA 57.397 29.630 0.00 0.00 39.82 2.92
3296 4088 7.612668 TGCATTGTATTCCAAATTTCCAATG 57.387 32.000 0.00 0.00 40.19 2.82
3298 4090 7.392418 TCATGCATTGTATTCCAAATTTCCAA 58.608 30.769 0.00 0.00 36.44 3.53
3299 4091 6.944096 TCATGCATTGTATTCCAAATTTCCA 58.056 32.000 0.00 0.00 36.44 3.53
3300 4092 8.981647 GTATCATGCATTGTATTCCAAATTTCC 58.018 33.333 0.00 0.00 36.44 3.13
3301 4093 8.981647 GGTATCATGCATTGTATTCCAAATTTC 58.018 33.333 0.00 0.00 36.44 2.17
3302 4094 8.484575 TGGTATCATGCATTGTATTCCAAATTT 58.515 29.630 0.00 0.00 36.44 1.82
3303 4095 8.020777 TGGTATCATGCATTGTATTCCAAATT 57.979 30.769 0.00 0.00 36.44 1.82
3304 4096 7.600231 TGGTATCATGCATTGTATTCCAAAT 57.400 32.000 0.00 0.00 36.44 2.32
3305 4097 6.461370 GCTGGTATCATGCATTGTATTCCAAA 60.461 38.462 0.00 0.00 36.44 3.28
3339 4132 3.165071 ACTTCCCAATTCACAACATCCC 58.835 45.455 0.00 0.00 0.00 3.85
3357 4150 2.324541 ACCAGCACAGAGAGAGAACTT 58.675 47.619 0.00 0.00 0.00 2.66
3362 4155 2.423185 CAGTCTACCAGCACAGAGAGAG 59.577 54.545 0.00 0.00 0.00 3.20
3561 4354 0.320771 CAGCAAACCAGCGACTACCT 60.321 55.000 0.00 0.00 40.15 3.08
3562 4355 1.912371 GCAGCAAACCAGCGACTACC 61.912 60.000 0.00 0.00 40.15 3.18
3563 4356 1.227999 TGCAGCAAACCAGCGACTAC 61.228 55.000 0.00 0.00 40.15 2.73
3564 4357 0.533978 TTGCAGCAAACCAGCGACTA 60.534 50.000 4.99 0.00 40.15 2.59
3565 4358 1.789078 CTTGCAGCAAACCAGCGACT 61.789 55.000 9.65 0.00 40.15 4.18
3568 4361 2.732094 GCTTGCAGCAAACCAGCG 60.732 61.111 9.65 0.00 41.89 5.18
3574 4367 0.965439 ATAAACGGGCTTGCAGCAAA 59.035 45.000 9.65 0.00 44.75 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.