Multiple sequence alignment - TraesCS4D01G222600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G222600 chr4D 100.000 5263 0 0 1 5263 379501778 379507040 0.000000e+00 9720.0
1 TraesCS4D01G222600 chr4D 93.878 98 5 1 3684 3780 500440129 500440032 4.250000e-31 147.0
2 TraesCS4D01G222600 chr4D 98.113 53 1 0 5104 5156 379506829 379506881 5.610000e-15 93.5
3 TraesCS4D01G222600 chr4D 98.113 53 1 0 5052 5104 379506881 379506933 5.610000e-15 93.5
4 TraesCS4D01G222600 chr4B 97.697 1954 37 4 1739 3686 466698309 466700260 0.000000e+00 3352.0
5 TraesCS4D01G222600 chr4B 92.665 1486 59 22 230 1703 466696861 466698308 0.000000e+00 2095.0
6 TraesCS4D01G222600 chr4B 89.575 1036 55 19 3782 4799 466700269 466701269 0.000000e+00 1266.0
7 TraesCS4D01G222600 chr4B 95.833 168 3 2 18 185 466696200 466696363 8.690000e-68 268.0
8 TraesCS4D01G222600 chr4B 94.898 98 5 0 4805 4902 107776969 107776872 2.540000e-33 154.0
9 TraesCS4D01G222600 chr4B 95.890 73 3 0 5191 5263 220276974 220277046 9.260000e-23 119.0
10 TraesCS4D01G222600 chr4A 94.061 1970 84 16 1716 3669 84932608 84930656 0.000000e+00 2959.0
11 TraesCS4D01G222600 chr4A 93.903 1345 47 9 21 1344 84934425 84933095 0.000000e+00 1997.0
12 TraesCS4D01G222600 chr4A 94.899 745 32 4 3778 4519 84930656 84929915 0.000000e+00 1160.0
13 TraesCS4D01G222600 chr4A 86.414 449 36 5 1360 1806 84933034 84932609 7.980000e-128 468.0
14 TraesCS4D01G222600 chr4A 86.620 142 12 4 4571 4708 84929804 84929666 3.280000e-32 150.0
15 TraesCS4D01G222600 chr4A 95.946 74 3 0 5190 5263 648980158 648980231 2.570000e-23 121.0
16 TraesCS4D01G222600 chr4A 94.366 71 4 0 4737 4807 84929666 84929596 5.570000e-20 110.0
17 TraesCS4D01G222600 chr1D 96.907 97 3 0 4805 4901 120317531 120317627 4.220000e-36 163.0
18 TraesCS4D01G222600 chr3B 94.898 98 5 0 4805 4902 114602241 114602338 2.540000e-33 154.0
19 TraesCS4D01G222600 chr3D 94.845 97 5 0 4805 4901 603946257 603946161 9.130000e-33 152.0
20 TraesCS4D01G222600 chr3A 94.000 100 6 0 4802 4901 64059314 64059413 9.130000e-33 152.0
21 TraesCS4D01G222600 chr3A 98.630 73 0 1 5191 5263 82909957 82909886 1.540000e-25 128.0
22 TraesCS4D01G222600 chr7A 93.137 102 7 0 4804 4905 666188168 666188269 3.280000e-32 150.0
23 TraesCS4D01G222600 chr7A 97.222 72 2 0 5192 5263 194562842 194562771 7.160000e-24 122.0
24 TraesCS4D01G222600 chr7A 88.350 103 9 2 3680 3780 477232458 477232559 2.570000e-23 121.0
25 TraesCS4D01G222600 chr7A 96.000 75 1 2 5190 5263 641402644 641402717 2.570000e-23 121.0
26 TraesCS4D01G222600 chr2B 93.069 101 7 0 4801 4901 629108529 629108629 1.180000e-31 148.0
27 TraesCS4D01G222600 chr2B 89.565 115 9 3 4804 4916 172750179 172750066 5.490000e-30 143.0
28 TraesCS4D01G222600 chr7D 93.814 97 6 0 4805 4901 41448452 41448548 4.250000e-31 147.0
29 TraesCS4D01G222600 chr7D 94.737 76 3 1 5189 5263 638153620 638153545 3.330000e-22 117.0
30 TraesCS4D01G222600 chr7D 87.255 102 10 2 3681 3780 415434509 415434609 4.310000e-21 113.0
31 TraesCS4D01G222600 chr7D 82.178 101 14 3 3683 3780 395073768 395073669 3.380000e-12 84.2
32 TraesCS4D01G222600 chr5A 90.816 98 8 1 3684 3780 681286391 681286294 4.280000e-26 130.0
33 TraesCS4D01G222600 chr7B 89.320 103 8 2 3680 3780 429191321 429191422 5.530000e-25 126.0
34 TraesCS4D01G222600 chr5B 93.902 82 1 4 5184 5263 65079778 65079699 2.570000e-23 121.0
35 TraesCS4D01G222600 chr5D 92.771 83 5 1 5182 5263 33697198 33697116 9.260000e-23 119.0
36 TraesCS4D01G222600 chr5D 94.737 76 3 1 5189 5263 424601806 424601881 3.330000e-22 117.0
37 TraesCS4D01G222600 chr5D 82.178 101 14 4 3682 3779 526139174 526139273 3.380000e-12 84.2
38 TraesCS4D01G222600 chr2A 88.776 98 8 2 3685 3780 535152545 535152449 3.330000e-22 117.0
39 TraesCS4D01G222600 chr1A 82.857 105 12 6 3681 3780 23116053 23115950 7.260000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G222600 chr4D 379501778 379507040 5262 False 3302.333333 9720 98.7420 1 5263 3 chr4D.!!$F1 5262
1 TraesCS4D01G222600 chr4B 466696200 466701269 5069 False 1745.250000 3352 93.9425 18 4799 4 chr4B.!!$F2 4781
2 TraesCS4D01G222600 chr4A 84929596 84934425 4829 True 1140.666667 2959 91.7105 21 4807 6 chr4A.!!$R1 4786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 1031 0.309612 CCTCCCAACCAAACGAAACG 59.690 55.000 0.0 0.0 0.00 3.60 F
1035 1512 0.880441 CGATTGTGAATGCCACCACA 59.120 50.000 0.0 0.0 45.09 4.17 F
1837 2452 1.003718 AGAACCGTTGGCAGCTACC 60.004 57.895 0.0 0.0 0.00 3.18 F
3709 4344 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 2084 2.989422 ACGCTTCCTTGTAATTGCAC 57.011 45.000 0.0 0.0 0.00 4.57 R
2784 3405 3.136763 AGCGAGTGAAGCCATATCATTG 58.863 45.455 0.0 0.0 34.64 2.82 R
3762 4397 0.120377 ACATACTCCCTCCACCCCAA 59.880 55.000 0.0 0.0 0.00 4.12 R
4801 5506 0.032017 ATGGAACGGAGGGAGTAGCT 60.032 55.000 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.495878 CTTTCGATCTGCATCTCGGG 58.504 55.000 15.47 5.63 35.64 5.14
72 73 2.629656 CGGGAGCCCAGCAAAACAG 61.630 63.158 6.34 0.00 35.37 3.16
73 74 2.278330 GGGAGCCCAGCAAAACAGG 61.278 63.158 0.00 0.00 35.81 4.00
74 75 1.228552 GGAGCCCAGCAAAACAGGA 60.229 57.895 0.00 0.00 0.00 3.86
75 76 1.246737 GGAGCCCAGCAAAACAGGAG 61.247 60.000 0.00 0.00 0.00 3.69
93 94 2.628657 GGAGGATAGCACACGGATAACT 59.371 50.000 0.00 0.00 0.00 2.24
242 700 3.764972 CTCCCTCCGTATTCTATTCCTCC 59.235 52.174 0.00 0.00 0.00 4.30
245 703 3.764972 CCTCCGTATTCTATTCCTCCTCC 59.235 52.174 0.00 0.00 0.00 4.30
248 706 3.764972 CCGTATTCTATTCCTCCTCCTCC 59.235 52.174 0.00 0.00 0.00 4.30
474 936 4.923415 AGAATTTCGAGTTCTGGGGATTT 58.077 39.130 12.62 0.00 34.77 2.17
568 1031 0.309612 CCTCCCAACCAAACGAAACG 59.690 55.000 0.00 0.00 0.00 3.60
574 1037 2.475852 CCAACCAAACGAAACGAAACGA 60.476 45.455 0.00 0.00 0.00 3.85
575 1038 3.162068 CAACCAAACGAAACGAAACGAA 58.838 40.909 0.00 0.00 0.00 3.85
576 1039 3.468304 ACCAAACGAAACGAAACGAAA 57.532 38.095 0.00 0.00 0.00 3.46
577 1040 3.162831 ACCAAACGAAACGAAACGAAAC 58.837 40.909 0.00 0.00 0.00 2.78
578 1041 2.209393 CCAAACGAAACGAAACGAAACG 59.791 45.455 0.00 0.00 0.00 3.60
665 1132 0.969409 GGCAAGGCCTTCATTGAGCT 60.969 55.000 17.29 0.00 46.69 4.09
713 1183 6.564125 CGATGCGGGTGAGATTTAGATTTTAC 60.564 42.308 0.00 0.00 0.00 2.01
714 1184 5.741011 TGCGGGTGAGATTTAGATTTTACT 58.259 37.500 0.00 0.00 0.00 2.24
715 1185 6.880484 TGCGGGTGAGATTTAGATTTTACTA 58.120 36.000 0.00 0.00 0.00 1.82
830 1305 6.860790 AAAATAACCCGGGTTAAACATGAT 57.139 33.333 41.90 26.24 42.82 2.45
871 1347 3.068024 TCTTTGGGATCAGTTTTGTGTGC 59.932 43.478 0.00 0.00 0.00 4.57
1035 1512 0.880441 CGATTGTGAATGCCACCACA 59.120 50.000 0.00 0.00 45.09 4.17
1114 1591 1.343142 TCGGGGTTCATATCGATGGTG 59.657 52.381 8.54 7.22 33.49 4.17
1127 1604 4.171878 TCGATGGTGATCCTCTTCTACT 57.828 45.455 0.00 0.00 34.23 2.57
1187 1664 7.390718 GTGGTATAGTTTTTGACATCTTGAGGT 59.609 37.037 0.00 0.00 0.00 3.85
1208 1685 4.012374 GTGGTGTCATTGATTCAGGTCAT 58.988 43.478 0.00 0.00 0.00 3.06
1295 1772 1.734465 CCAAAGAAGCCACTTAGCGAG 59.266 52.381 0.00 0.00 38.01 5.03
1307 1784 3.440872 CACTTAGCGAGAAGGTAGAGTGT 59.559 47.826 0.00 0.00 37.28 3.55
1332 1809 5.759506 TTTATCCTTTGTTCGCAGTTTGA 57.240 34.783 0.00 0.00 0.00 2.69
1346 1862 8.786028 GTTCGCAGTTTGATAAAGTTAATAAGC 58.214 33.333 0.00 0.00 0.00 3.09
1454 1976 3.264450 ACCAGAACCTTTATGTCCTCCAG 59.736 47.826 0.00 0.00 0.00 3.86
1471 1993 2.043664 TCCAGTCAAGGAGAGGTCTCAT 59.956 50.000 9.20 0.00 44.60 2.90
1489 2011 6.409234 GGTCTCATATTGACCCACCAATCTTA 60.409 42.308 11.71 0.00 46.01 2.10
1512 2034 2.496899 AGGTCTGTGTGGCTTATTGG 57.503 50.000 0.00 0.00 0.00 3.16
1522 2044 7.448777 TCTGTGTGGCTTATTGGTTTGTTAATA 59.551 33.333 0.00 0.00 0.00 0.98
1562 2084 9.734620 TTGAATTTATTTTTCTGTCTGTGTCTG 57.265 29.630 0.00 0.00 0.00 3.51
1600 2123 2.685100 GTAACCAGTGTGCACTCCTAC 58.315 52.381 19.41 7.71 40.20 3.18
1668 2191 6.602406 TCTGTCTGAAGTACTTCCTACCATAC 59.398 42.308 28.43 15.17 38.77 2.39
1765 2379 3.951037 ACCTCTCACAGTAGTATCTGCAG 59.049 47.826 7.63 7.63 38.84 4.41
1837 2452 1.003718 AGAACCGTTGGCAGCTACC 60.004 57.895 0.00 0.00 0.00 3.18
1918 2533 9.932207 GATCCATGGAATATGAAATGCAAATAA 57.068 29.630 20.67 0.00 0.00 1.40
1994 2609 8.998814 TCTATATTCTGTCCTTTATTTGTGGGA 58.001 33.333 0.00 0.00 0.00 4.37
2000 2615 8.561536 TCTGTCCTTTATTTGTGGGAGATATA 57.438 34.615 0.00 0.00 0.00 0.86
2150 2769 4.612943 TGGTTTAATTGGCAACGAGAAAC 58.387 39.130 0.00 10.31 38.29 2.78
2564 3185 6.805713 TCCTTCATTTTCCTGTTTTGAGAAC 58.194 36.000 0.00 0.00 0.00 3.01
2660 3281 4.579869 ACCTCACTAATACTTTGCACTGG 58.420 43.478 0.00 0.00 0.00 4.00
2784 3405 8.129211 AGAAGTACTGTTGTTTATTTCAAGCAC 58.871 33.333 0.00 0.00 0.00 4.40
2829 3450 3.729217 GCACTTTGGAAAAACTTACTCGC 59.271 43.478 0.00 0.00 0.00 5.03
2994 3615 9.773328 ATCTTGATTGTAAACACATGAAATACG 57.227 29.630 0.00 0.00 0.00 3.06
3255 3890 4.843220 ACTTCTTGCCATGTTCTTTCTG 57.157 40.909 0.00 0.00 0.00 3.02
3310 3945 6.798482 TGACAAAATTGATATCATCACTGCC 58.202 36.000 6.17 0.00 39.39 4.85
3690 4325 9.277783 GATATGCAAACCATGATATATACTCCC 57.722 37.037 0.00 0.00 35.34 4.30
3691 4326 6.702449 TGCAAACCATGATATATACTCCCT 57.298 37.500 0.00 0.00 0.00 4.20
3692 4327 6.711277 TGCAAACCATGATATATACTCCCTC 58.289 40.000 0.00 0.00 0.00 4.30
3694 4329 6.341316 CAAACCATGATATATACTCCCTCCG 58.659 44.000 0.00 0.00 0.00 4.63
3695 4330 5.208294 ACCATGATATATACTCCCTCCGT 57.792 43.478 0.00 0.00 0.00 4.69
3696 4331 5.202004 ACCATGATATATACTCCCTCCGTC 58.798 45.833 0.00 0.00 0.00 4.79
3697 4332 5.044030 ACCATGATATATACTCCCTCCGTCT 60.044 44.000 0.00 0.00 0.00 4.18
3698 4333 5.533154 CCATGATATATACTCCCTCCGTCTC 59.467 48.000 0.00 0.00 0.00 3.36
3699 4334 5.774102 TGATATATACTCCCTCCGTCTCA 57.226 43.478 0.00 0.00 0.00 3.27
3700 4335 6.135819 TGATATATACTCCCTCCGTCTCAA 57.864 41.667 0.00 0.00 0.00 3.02
3701 4336 6.549242 TGATATATACTCCCTCCGTCTCAAA 58.451 40.000 0.00 0.00 0.00 2.69
3702 4337 7.008332 TGATATATACTCCCTCCGTCTCAAAA 58.992 38.462 0.00 0.00 0.00 2.44
3703 4338 7.674348 TGATATATACTCCCTCCGTCTCAAAAT 59.326 37.037 0.00 0.00 0.00 1.82
3704 4339 9.186837 GATATATACTCCCTCCGTCTCAAAATA 57.813 37.037 0.00 0.00 0.00 1.40
3705 4340 7.850935 ATATACTCCCTCCGTCTCAAAATAA 57.149 36.000 0.00 0.00 0.00 1.40
3706 4341 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3707 4342 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
3708 4343 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3709 4344 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3710 4345 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3711 4346 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
3712 4347 5.238583 CCTCCGTCTCAAAATAAGTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
3713 4348 5.120830 CCTCCGTCTCAAAATAAGTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
3714 4349 4.994852 TCCGTCTCAAAATAAGTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
3715 4350 4.755123 CCGTCTCAAAATAAGTGTCTTGGT 59.245 41.667 0.00 0.00 0.00 3.67
3716 4351 5.238650 CCGTCTCAAAATAAGTGTCTTGGTT 59.761 40.000 0.00 0.00 0.00 3.67
3717 4352 6.238648 CCGTCTCAAAATAAGTGTCTTGGTTT 60.239 38.462 0.00 0.00 0.00 3.27
3718 4353 7.193595 CGTCTCAAAATAAGTGTCTTGGTTTT 58.806 34.615 0.00 0.00 0.00 2.43
3719 4354 8.339714 CGTCTCAAAATAAGTGTCTTGGTTTTA 58.660 33.333 0.00 0.00 0.00 1.52
3720 4355 9.665264 GTCTCAAAATAAGTGTCTTGGTTTTAG 57.335 33.333 0.00 0.00 0.00 1.85
3721 4356 9.403583 TCTCAAAATAAGTGTCTTGGTTTTAGT 57.596 29.630 0.00 0.00 0.00 2.24
3724 4359 9.796120 CAAAATAAGTGTCTTGGTTTTAGTTCA 57.204 29.630 0.00 0.00 0.00 3.18
3731 4366 9.185680 AGTGTCTTGGTTTTAGTTCATTTTAGT 57.814 29.630 0.00 0.00 0.00 2.24
3732 4367 9.797556 GTGTCTTGGTTTTAGTTCATTTTAGTT 57.202 29.630 0.00 0.00 0.00 2.24
3757 4392 9.482627 TTCAAATTTGAACTAAAACACAACACT 57.517 25.926 26.01 0.00 41.88 3.55
3758 4393 9.482627 TCAAATTTGAACTAAAACACAACACTT 57.517 25.926 18.45 0.00 33.55 3.16
3765 4400 9.360093 TGAACTAAAACACAACACTTATTTTGG 57.640 29.630 0.00 0.00 0.00 3.28
3766 4401 8.710835 AACTAAAACACAACACTTATTTTGGG 57.289 30.769 0.00 0.00 32.01 4.12
3767 4402 7.269316 ACTAAAACACAACACTTATTTTGGGG 58.731 34.615 0.00 0.00 29.77 4.96
3768 4403 5.685520 AAACACAACACTTATTTTGGGGT 57.314 34.783 0.00 0.00 29.77 4.95
3769 4404 4.664150 ACACAACACTTATTTTGGGGTG 57.336 40.909 0.00 0.00 29.77 4.61
3770 4405 3.386402 ACACAACACTTATTTTGGGGTGG 59.614 43.478 0.00 0.00 34.42 4.61
3771 4406 3.639094 CACAACACTTATTTTGGGGTGGA 59.361 43.478 0.00 0.00 34.42 4.02
3772 4407 3.895041 ACAACACTTATTTTGGGGTGGAG 59.105 43.478 0.00 0.00 34.42 3.86
3773 4408 3.169512 ACACTTATTTTGGGGTGGAGG 57.830 47.619 0.00 0.00 34.42 4.30
3774 4409 2.225267 ACACTTATTTTGGGGTGGAGGG 60.225 50.000 0.00 0.00 34.42 4.30
3775 4410 2.042433 CACTTATTTTGGGGTGGAGGGA 59.958 50.000 0.00 0.00 0.00 4.20
3776 4411 2.311841 ACTTATTTTGGGGTGGAGGGAG 59.688 50.000 0.00 0.00 0.00 4.30
3777 4412 2.068831 TATTTTGGGGTGGAGGGAGT 57.931 50.000 0.00 0.00 0.00 3.85
3778 4413 2.068831 ATTTTGGGGTGGAGGGAGTA 57.931 50.000 0.00 0.00 0.00 2.59
3779 4414 2.068831 TTTTGGGGTGGAGGGAGTAT 57.931 50.000 0.00 0.00 0.00 2.12
3780 4415 1.295020 TTTGGGGTGGAGGGAGTATG 58.705 55.000 0.00 0.00 0.00 2.39
3794 4429 4.463186 AGGGAGTATGTGTGAAGTACAGTC 59.537 45.833 0.00 0.00 40.69 3.51
3860 4495 7.339212 TCACCACCTTGATTCCTTTTATGTATG 59.661 37.037 0.00 0.00 0.00 2.39
3909 4549 4.472833 AGGACTTGAGATTTCTAGCCATGT 59.527 41.667 9.39 0.00 30.74 3.21
3949 4589 4.174009 TCCTTAAGCTGAAGAAATCGACG 58.826 43.478 12.89 0.00 0.00 5.12
4016 4656 3.196685 GCAGGTAAGTTCAGATGGACTCT 59.803 47.826 0.00 0.00 33.14 3.24
4031 4671 3.074687 TGGACTCTGACTAGACTTCCAGT 59.925 47.826 0.00 0.00 36.07 4.00
4036 4676 3.005897 TCTGACTAGACTTCCAGTTGCAC 59.994 47.826 0.00 0.00 0.00 4.57
4062 4702 5.034554 ACATCAACTTTCATAAGCACACG 57.965 39.130 0.00 0.00 34.60 4.49
4103 4745 5.068987 CCAACAGGTTTTGAAGGAAGATTCA 59.931 40.000 0.00 0.00 37.41 2.57
4118 4760 4.525912 AGATTCAGTTTTCATTGTGGCC 57.474 40.909 0.00 0.00 0.00 5.36
4210 4852 2.611292 CTGAATCGGACATCTCCAAAGC 59.389 50.000 0.00 0.00 36.12 3.51
4263 4905 4.376413 CGGTTCTTTCAGATCACGTTTGAG 60.376 45.833 0.00 0.00 34.35 3.02
4319 4962 1.062294 GTTTTTGACGCCGTGTGTACA 59.938 47.619 0.00 0.00 0.00 2.90
4333 4976 4.143115 CGTGTGTACACTAAAGGCTGATTG 60.143 45.833 25.60 0.00 44.34 2.67
4444 5087 5.761165 ATTTTGTAAACGCTGTGGTTAGT 57.239 34.783 0.00 0.00 0.00 2.24
4522 5205 2.249139 GTCTTCAGTGTCCTGGGTACT 58.751 52.381 0.00 0.00 39.31 2.73
4534 5217 4.876107 GTCCTGGGTACTTGAATACACATG 59.124 45.833 0.00 0.00 37.82 3.21
4537 5220 4.854173 TGGGTACTTGAATACACATGCAT 58.146 39.130 0.00 0.00 33.45 3.96
4541 5224 6.017934 GGGTACTTGAATACACATGCATACAG 60.018 42.308 0.00 0.00 0.00 2.74
4556 5239 4.201940 TGCATACAGCCATCATTTTTCTCG 60.202 41.667 0.00 0.00 44.83 4.04
4584 5286 4.201970 ACGATAAGAGCAACTCTAGCAGAC 60.202 45.833 0.00 0.00 40.28 3.51
4593 5295 3.396685 ACTCTAGCAGACTCCCAAGAT 57.603 47.619 0.00 0.00 0.00 2.40
4596 5298 3.703556 CTCTAGCAGACTCCCAAGATGAA 59.296 47.826 0.00 0.00 0.00 2.57
4599 5301 3.683802 AGCAGACTCCCAAGATGAAAAG 58.316 45.455 0.00 0.00 0.00 2.27
4602 5304 4.520492 GCAGACTCCCAAGATGAAAAGAAA 59.480 41.667 0.00 0.00 0.00 2.52
4603 5305 5.563671 GCAGACTCCCAAGATGAAAAGAAAC 60.564 44.000 0.00 0.00 0.00 2.78
4604 5306 5.767168 CAGACTCCCAAGATGAAAAGAAACT 59.233 40.000 0.00 0.00 0.00 2.66
4605 5307 6.000840 AGACTCCCAAGATGAAAAGAAACTC 58.999 40.000 0.00 0.00 0.00 3.01
4606 5308 5.946486 ACTCCCAAGATGAAAAGAAACTCT 58.054 37.500 0.00 0.00 0.00 3.24
4607 5309 5.767168 ACTCCCAAGATGAAAAGAAACTCTG 59.233 40.000 0.00 0.00 0.00 3.35
4608 5310 5.694995 TCCCAAGATGAAAAGAAACTCTGT 58.305 37.500 0.00 0.00 0.00 3.41
4609 5311 6.129179 TCCCAAGATGAAAAGAAACTCTGTT 58.871 36.000 0.00 0.00 0.00 3.16
4610 5312 7.287061 TCCCAAGATGAAAAGAAACTCTGTTA 58.713 34.615 0.00 0.00 0.00 2.41
4611 5313 7.944554 TCCCAAGATGAAAAGAAACTCTGTTAT 59.055 33.333 0.00 0.00 0.00 1.89
4612 5314 9.231297 CCCAAGATGAAAAGAAACTCTGTTATA 57.769 33.333 0.00 0.00 0.00 0.98
4619 5324 9.621629 TGAAAAGAAACTCTGTTATAAAGGACA 57.378 29.630 0.00 0.00 0.00 4.02
4785 5490 2.093921 GCTAGCGATATTTCCTCTCCCC 60.094 54.545 0.00 0.00 0.00 4.81
4799 5504 1.152271 TCTCCCCCTCTTTCTTCCTGT 59.848 52.381 0.00 0.00 0.00 4.00
4801 5506 1.132527 TCCCCCTCTTTCTTCCTGTCA 60.133 52.381 0.00 0.00 0.00 3.58
4807 5512 3.513515 CCTCTTTCTTCCTGTCAGCTACT 59.486 47.826 0.00 0.00 0.00 2.57
4808 5513 4.381505 CCTCTTTCTTCCTGTCAGCTACTC 60.382 50.000 0.00 0.00 0.00 2.59
4809 5514 3.511934 TCTTTCTTCCTGTCAGCTACTCC 59.488 47.826 0.00 0.00 0.00 3.85
4810 5515 1.853963 TCTTCCTGTCAGCTACTCCC 58.146 55.000 0.00 0.00 0.00 4.30
4811 5516 1.359474 TCTTCCTGTCAGCTACTCCCT 59.641 52.381 0.00 0.00 0.00 4.20
4812 5517 1.754226 CTTCCTGTCAGCTACTCCCTC 59.246 57.143 0.00 0.00 0.00 4.30
4813 5518 0.033011 TCCTGTCAGCTACTCCCTCC 60.033 60.000 0.00 0.00 0.00 4.30
4814 5519 1.388065 CCTGTCAGCTACTCCCTCCG 61.388 65.000 0.00 0.00 0.00 4.63
4815 5520 0.681564 CTGTCAGCTACTCCCTCCGT 60.682 60.000 0.00 0.00 0.00 4.69
4816 5521 0.251653 TGTCAGCTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
4817 5522 0.456628 GTCAGCTACTCCCTCCGTTC 59.543 60.000 0.00 0.00 0.00 3.95
4818 5523 0.683504 TCAGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
4819 5524 0.970937 CAGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
4820 5525 0.032017 AGCTACTCCCTCCGTTCCAT 60.032 55.000 0.00 0.00 0.00 3.41
4821 5526 1.217183 AGCTACTCCCTCCGTTCCATA 59.783 52.381 0.00 0.00 0.00 2.74
4822 5527 2.037144 GCTACTCCCTCCGTTCCATAA 58.963 52.381 0.00 0.00 0.00 1.90
4823 5528 2.633481 GCTACTCCCTCCGTTCCATAAT 59.367 50.000 0.00 0.00 0.00 1.28
4824 5529 3.830755 GCTACTCCCTCCGTTCCATAATA 59.169 47.826 0.00 0.00 0.00 0.98
4825 5530 4.082136 GCTACTCCCTCCGTTCCATAATAG 60.082 50.000 0.00 0.00 0.00 1.73
4826 5531 4.194678 ACTCCCTCCGTTCCATAATAGA 57.805 45.455 0.00 0.00 0.00 1.98
4827 5532 4.753186 ACTCCCTCCGTTCCATAATAGAT 58.247 43.478 0.00 0.00 0.00 1.98
4828 5533 5.900437 ACTCCCTCCGTTCCATAATAGATA 58.100 41.667 0.00 0.00 0.00 1.98
4829 5534 6.320518 ACTCCCTCCGTTCCATAATAGATAA 58.679 40.000 0.00 0.00 0.00 1.75
4830 5535 6.210984 ACTCCCTCCGTTCCATAATAGATAAC 59.789 42.308 0.00 0.00 0.00 1.89
4831 5536 6.320518 TCCCTCCGTTCCATAATAGATAACT 58.679 40.000 0.00 0.00 0.00 2.24
4832 5537 6.436532 TCCCTCCGTTCCATAATAGATAACTC 59.563 42.308 0.00 0.00 0.00 3.01
4833 5538 6.210784 CCCTCCGTTCCATAATAGATAACTCA 59.789 42.308 0.00 0.00 0.00 3.41
4834 5539 7.256190 CCCTCCGTTCCATAATAGATAACTCAA 60.256 40.741 0.00 0.00 0.00 3.02
4835 5540 7.599245 CCTCCGTTCCATAATAGATAACTCAAC 59.401 40.741 0.00 0.00 0.00 3.18
4836 5541 8.246430 TCCGTTCCATAATAGATAACTCAACT 57.754 34.615 0.00 0.00 0.00 3.16
4837 5542 8.701895 TCCGTTCCATAATAGATAACTCAACTT 58.298 33.333 0.00 0.00 0.00 2.66
4838 5543 9.326413 CCGTTCCATAATAGATAACTCAACTTT 57.674 33.333 0.00 0.00 0.00 2.66
4854 5559 9.662947 AACTCAACTTTGTACTAACTTTGTACT 57.337 29.630 12.73 0.00 40.44 2.73
4875 5580 9.850198 TGTACTAAAATTAGTGTAAAGTTGGGT 57.150 29.630 14.54 0.00 43.44 4.51
4877 5582 8.983702 ACTAAAATTAGTGTAAAGTTGGGTCA 57.016 30.769 5.07 0.00 42.13 4.02
4878 5583 9.582648 ACTAAAATTAGTGTAAAGTTGGGTCAT 57.417 29.630 5.07 0.00 42.13 3.06
4880 5585 8.706322 AAAATTAGTGTAAAGTTGGGTCATCT 57.294 30.769 0.00 0.00 0.00 2.90
4881 5586 9.802039 AAAATTAGTGTAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
4882 5587 9.975218 AAATTAGTGTAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
4883 5588 9.975218 AATTAGTGTAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
4884 5589 9.975218 ATTAGTGTAAAGTTGGGTCATCTATTT 57.025 29.630 0.00 0.00 0.00 1.40
4885 5590 9.802039 TTAGTGTAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4886 5591 8.110860 AGTGTAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4887 5592 7.176690 AGTGTAAAGTTGGGTCATCTATTTTGG 59.823 37.037 0.00 0.00 0.00 3.28
4888 5593 7.175990 GTGTAAAGTTGGGTCATCTATTTTGGA 59.824 37.037 0.00 0.00 0.00 3.53
4889 5594 7.726291 TGTAAAGTTGGGTCATCTATTTTGGAA 59.274 33.333 0.00 0.00 0.00 3.53
4890 5595 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4891 5596 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4892 5597 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4893 5598 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4894 5599 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4895 5600 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4896 5601 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4897 5602 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4898 5603 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4899 5604 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4900 5605 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4901 5606 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4902 5607 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
4903 5608 0.540365 TTGGAACGGAGGGAGTACGT 60.540 55.000 0.00 0.00 43.43 3.57
4904 5609 0.962356 TGGAACGGAGGGAGTACGTC 60.962 60.000 0.00 0.00 40.31 4.34
4905 5610 0.962356 GGAACGGAGGGAGTACGTCA 60.962 60.000 0.00 0.00 40.31 4.35
4906 5611 0.169894 GAACGGAGGGAGTACGTCAC 59.830 60.000 0.00 0.00 40.31 3.67
4907 5612 0.251077 AACGGAGGGAGTACGTCACT 60.251 55.000 0.00 0.00 44.05 3.41
4908 5613 0.959372 ACGGAGGGAGTACGTCACTG 60.959 60.000 0.00 0.00 39.97 3.66
4909 5614 1.511768 GGAGGGAGTACGTCACTGC 59.488 63.158 0.00 0.00 39.97 4.40
4910 5615 1.248785 GGAGGGAGTACGTCACTGCA 61.249 60.000 14.84 0.00 46.28 4.41
4911 5616 0.601558 GAGGGAGTACGTCACTGCAA 59.398 55.000 14.84 0.00 46.90 4.08
4912 5617 1.204941 GAGGGAGTACGTCACTGCAAT 59.795 52.381 14.84 6.32 46.90 3.56
4913 5618 1.623811 AGGGAGTACGTCACTGCAATT 59.376 47.619 14.84 2.46 46.90 2.32
4914 5619 1.732259 GGGAGTACGTCACTGCAATTG 59.268 52.381 14.84 0.00 46.90 2.32
4915 5620 2.413837 GGAGTACGTCACTGCAATTGT 58.586 47.619 7.40 0.00 44.60 2.71
4916 5621 2.806244 GGAGTACGTCACTGCAATTGTT 59.194 45.455 7.40 0.00 44.60 2.83
4917 5622 3.363970 GGAGTACGTCACTGCAATTGTTG 60.364 47.826 7.40 2.93 44.60 3.33
4926 5631 2.504681 CAATTGTTGCGCCGCCTC 60.505 61.111 6.63 0.00 0.00 4.70
4927 5632 3.747976 AATTGTTGCGCCGCCTCC 61.748 61.111 6.63 0.00 0.00 4.30
4939 5644 4.792804 GCCTCCAGCTGCCTCCAC 62.793 72.222 8.66 0.00 38.99 4.02
4940 5645 4.106925 CCTCCAGCTGCCTCCACC 62.107 72.222 8.66 0.00 0.00 4.61
4941 5646 4.463879 CTCCAGCTGCCTCCACCG 62.464 72.222 8.66 0.00 0.00 4.94
4943 5648 4.767255 CCAGCTGCCTCCACCGAC 62.767 72.222 8.66 0.00 0.00 4.79
4947 5652 3.374402 CTGCCTCCACCGACGACT 61.374 66.667 0.00 0.00 0.00 4.18
4948 5653 3.343788 CTGCCTCCACCGACGACTC 62.344 68.421 0.00 0.00 0.00 3.36
4949 5654 4.131088 GCCTCCACCGACGACTCC 62.131 72.222 0.00 0.00 0.00 3.85
4950 5655 2.675423 CCTCCACCGACGACTCCA 60.675 66.667 0.00 0.00 0.00 3.86
4951 5656 2.052690 CCTCCACCGACGACTCCAT 61.053 63.158 0.00 0.00 0.00 3.41
4952 5657 1.139734 CTCCACCGACGACTCCATG 59.860 63.158 0.00 0.00 0.00 3.66
4953 5658 2.184322 CCACCGACGACTCCATGG 59.816 66.667 4.97 4.97 0.00 3.66
4954 5659 2.509336 CACCGACGACTCCATGGC 60.509 66.667 6.96 0.00 0.00 4.40
4961 5666 2.514824 GACTCCATGGCGAAGGGC 60.515 66.667 9.17 0.00 42.51 5.19
4970 5675 3.723348 GCGAAGGGCACGGTGAAC 61.723 66.667 13.29 3.42 42.87 3.18
4971 5676 3.047877 CGAAGGGCACGGTGAACC 61.048 66.667 13.29 12.91 0.00 3.62
4984 5689 2.294979 GGTGAACCGAAACAAGAAGGT 58.705 47.619 0.00 0.00 38.88 3.50
4985 5690 2.032924 GGTGAACCGAAACAAGAAGGTG 59.967 50.000 0.00 0.00 37.03 4.00
4986 5691 2.940410 GTGAACCGAAACAAGAAGGTGA 59.060 45.455 0.00 0.00 37.03 4.02
4987 5692 3.375922 GTGAACCGAAACAAGAAGGTGAA 59.624 43.478 0.00 0.00 37.03 3.18
4988 5693 3.375922 TGAACCGAAACAAGAAGGTGAAC 59.624 43.478 0.00 0.00 37.03 3.18
4989 5694 2.993937 ACCGAAACAAGAAGGTGAACA 58.006 42.857 0.00 0.00 35.36 3.18
4990 5695 2.681344 ACCGAAACAAGAAGGTGAACAC 59.319 45.455 0.00 0.00 35.36 3.32
4991 5696 2.943033 CCGAAACAAGAAGGTGAACACT 59.057 45.455 4.96 0.00 0.00 3.55
4992 5697 3.002348 CCGAAACAAGAAGGTGAACACTC 59.998 47.826 4.96 0.00 0.00 3.51
4993 5698 3.871594 CGAAACAAGAAGGTGAACACTCT 59.128 43.478 4.96 0.00 0.00 3.24
4994 5699 4.025647 CGAAACAAGAAGGTGAACACTCTC 60.026 45.833 4.96 2.64 0.00 3.20
4995 5700 4.487714 AACAAGAAGGTGAACACTCTCA 57.512 40.909 4.96 0.00 0.00 3.27
4996 5701 3.798202 ACAAGAAGGTGAACACTCTCAC 58.202 45.455 4.96 0.00 44.21 3.51
4997 5702 2.797156 CAAGAAGGTGAACACTCTCACG 59.203 50.000 4.96 0.00 45.60 4.35
4998 5703 1.140816 GAAGGTGAACACTCTCACGC 58.859 55.000 4.96 0.00 45.60 5.34
4999 5704 0.464036 AAGGTGAACACTCTCACGCA 59.536 50.000 4.96 0.00 45.60 5.24
5000 5705 0.249489 AGGTGAACACTCTCACGCAC 60.249 55.000 4.96 0.00 45.60 5.34
5001 5706 1.222115 GGTGAACACTCTCACGCACC 61.222 60.000 4.96 0.00 45.60 5.01
5002 5707 1.069090 TGAACACTCTCACGCACCC 59.931 57.895 0.00 0.00 0.00 4.61
5003 5708 1.668151 GAACACTCTCACGCACCCC 60.668 63.158 0.00 0.00 0.00 4.95
5004 5709 2.377628 GAACACTCTCACGCACCCCA 62.378 60.000 0.00 0.00 0.00 4.96
5005 5710 1.768684 AACACTCTCACGCACCCCAT 61.769 55.000 0.00 0.00 0.00 4.00
5006 5711 1.448540 CACTCTCACGCACCCCATC 60.449 63.158 0.00 0.00 0.00 3.51
5007 5712 2.187946 CTCTCACGCACCCCATCC 59.812 66.667 0.00 0.00 0.00 3.51
5008 5713 3.723235 CTCTCACGCACCCCATCCG 62.723 68.421 0.00 0.00 0.00 4.18
5009 5714 4.838152 CTCACGCACCCCATCCGG 62.838 72.222 0.00 0.00 0.00 5.14
5026 5731 4.377263 GGTGTCTACCCCTCCTCC 57.623 66.667 0.00 0.00 41.36 4.30
5027 5732 1.757340 GGTGTCTACCCCTCCTCCG 60.757 68.421 0.00 0.00 41.36 4.63
5028 5733 1.000107 GTGTCTACCCCTCCTCCGT 60.000 63.158 0.00 0.00 0.00 4.69
5029 5734 0.257039 GTGTCTACCCCTCCTCCGTA 59.743 60.000 0.00 0.00 0.00 4.02
5030 5735 0.257039 TGTCTACCCCTCCTCCGTAC 59.743 60.000 0.00 0.00 0.00 3.67
5031 5736 0.257039 GTCTACCCCTCCTCCGTACA 59.743 60.000 0.00 0.00 0.00 2.90
5032 5737 1.133544 GTCTACCCCTCCTCCGTACAT 60.134 57.143 0.00 0.00 0.00 2.29
5033 5738 1.144503 TCTACCCCTCCTCCGTACATC 59.855 57.143 0.00 0.00 0.00 3.06
5034 5739 0.186873 TACCCCTCCTCCGTACATCC 59.813 60.000 0.00 0.00 0.00 3.51
5035 5740 1.837499 CCCCTCCTCCGTACATCCC 60.837 68.421 0.00 0.00 0.00 3.85
5036 5741 1.233369 CCCTCCTCCGTACATCCCT 59.767 63.158 0.00 0.00 0.00 4.20
5037 5742 0.828343 CCCTCCTCCGTACATCCCTC 60.828 65.000 0.00 0.00 0.00 4.30
5038 5743 0.186386 CCTCCTCCGTACATCCCTCT 59.814 60.000 0.00 0.00 0.00 3.69
5039 5744 1.323412 CTCCTCCGTACATCCCTCTG 58.677 60.000 0.00 0.00 0.00 3.35
5040 5745 0.924090 TCCTCCGTACATCCCTCTGA 59.076 55.000 0.00 0.00 0.00 3.27
5041 5746 1.033574 CCTCCGTACATCCCTCTGAC 58.966 60.000 0.00 0.00 0.00 3.51
5042 5747 1.033574 CTCCGTACATCCCTCTGACC 58.966 60.000 0.00 0.00 0.00 4.02
5043 5748 0.396695 TCCGTACATCCCTCTGACCC 60.397 60.000 0.00 0.00 0.00 4.46
5044 5749 0.686441 CCGTACATCCCTCTGACCCA 60.686 60.000 0.00 0.00 0.00 4.51
5045 5750 1.191535 CGTACATCCCTCTGACCCAA 58.808 55.000 0.00 0.00 0.00 4.12
5046 5751 1.134788 CGTACATCCCTCTGACCCAAC 60.135 57.143 0.00 0.00 0.00 3.77
5047 5752 2.188817 GTACATCCCTCTGACCCAACT 58.811 52.381 0.00 0.00 0.00 3.16
5048 5753 0.987294 ACATCCCTCTGACCCAACTG 59.013 55.000 0.00 0.00 0.00 3.16
5049 5754 0.393537 CATCCCTCTGACCCAACTGC 60.394 60.000 0.00 0.00 0.00 4.40
5050 5755 1.566298 ATCCCTCTGACCCAACTGCC 61.566 60.000 0.00 0.00 0.00 4.85
5051 5756 2.046892 CCTCTGACCCAACTGCCG 60.047 66.667 0.00 0.00 0.00 5.69
5052 5757 2.743928 CTCTGACCCAACTGCCGC 60.744 66.667 0.00 0.00 0.00 6.53
5053 5758 4.680237 TCTGACCCAACTGCCGCG 62.680 66.667 0.00 0.00 0.00 6.46
5064 5769 4.512961 TGCCGCGCAGACGATGAT 62.513 61.111 8.75 0.00 43.93 2.45
5065 5770 3.993234 GCCGCGCAGACGATGATG 61.993 66.667 8.75 0.00 43.93 3.07
5066 5771 2.278792 CCGCGCAGACGATGATGA 60.279 61.111 8.75 0.00 43.93 2.92
5067 5772 1.878069 CCGCGCAGACGATGATGAA 60.878 57.895 8.75 0.00 43.93 2.57
5068 5773 1.270968 CGCGCAGACGATGATGAAC 59.729 57.895 8.75 0.00 43.93 3.18
5069 5774 1.413008 CGCGCAGACGATGATGAACA 61.413 55.000 8.75 0.00 43.93 3.18
5070 5775 0.933097 GCGCAGACGATGATGAACAT 59.067 50.000 0.30 0.00 43.93 2.71
5080 5785 4.526970 GATGATGAACATCGACACCAAG 57.473 45.455 9.71 0.00 44.46 3.61
5081 5786 2.076100 TGATGAACATCGACACCAAGC 58.924 47.619 9.71 0.00 40.63 4.01
5082 5787 2.076100 GATGAACATCGACACCAAGCA 58.924 47.619 0.00 0.00 0.00 3.91
5083 5788 1.225855 TGAACATCGACACCAAGCAC 58.774 50.000 0.00 0.00 0.00 4.40
5084 5789 0.163788 GAACATCGACACCAAGCACG 59.836 55.000 0.00 0.00 0.00 5.34
5085 5790 0.531974 AACATCGACACCAAGCACGT 60.532 50.000 0.00 0.00 0.00 4.49
5086 5791 1.221466 ACATCGACACCAAGCACGTG 61.221 55.000 12.28 12.28 37.26 4.49
5087 5792 1.069090 ATCGACACCAAGCACGTGT 59.931 52.632 18.38 0.68 46.91 4.49
5088 5793 0.531974 ATCGACACCAAGCACGTGTT 60.532 50.000 18.38 8.60 44.34 3.32
5089 5794 1.149361 TCGACACCAAGCACGTGTTC 61.149 55.000 18.38 0.57 44.34 3.18
5090 5795 1.425267 CGACACCAAGCACGTGTTCA 61.425 55.000 18.38 0.00 44.34 3.18
5091 5796 0.730265 GACACCAAGCACGTGTTCAA 59.270 50.000 18.38 0.00 44.34 2.69
5092 5797 0.450184 ACACCAAGCACGTGTTCAAC 59.550 50.000 18.38 0.00 41.66 3.18
5105 5810 2.651703 GTGTTCAACGAAATGTCATGCG 59.348 45.455 6.76 6.76 0.00 4.73
5106 5811 1.643810 GTTCAACGAAATGTCATGCGC 59.356 47.619 0.00 0.00 0.00 6.09
5107 5812 0.871057 TCAACGAAATGTCATGCGCA 59.129 45.000 14.96 14.96 0.00 6.09
5108 5813 1.136000 TCAACGAAATGTCATGCGCAG 60.136 47.619 18.32 8.46 0.00 5.18
5109 5814 1.136000 CAACGAAATGTCATGCGCAGA 60.136 47.619 18.32 10.94 0.00 4.26
5110 5815 0.443869 ACGAAATGTCATGCGCAGAC 59.556 50.000 24.18 24.18 36.55 3.51
5111 5816 0.584785 CGAAATGTCATGCGCAGACG 60.585 55.000 24.75 14.35 38.83 4.18
5112 5817 0.721154 GAAATGTCATGCGCAGACGA 59.279 50.000 24.75 16.08 43.93 4.20
5113 5818 1.328680 GAAATGTCATGCGCAGACGAT 59.671 47.619 24.75 18.75 43.93 3.73
5114 5819 0.654160 AATGTCATGCGCAGACGATG 59.346 50.000 24.75 15.91 43.93 3.84
5115 5820 0.179103 ATGTCATGCGCAGACGATGA 60.179 50.000 24.75 17.65 43.93 2.92
5116 5821 0.179103 TGTCATGCGCAGACGATGAT 60.179 50.000 24.75 3.18 43.93 2.45
5117 5822 0.231534 GTCATGCGCAGACGATGATG 59.768 55.000 18.32 6.64 43.93 3.07
5118 5823 0.102844 TCATGCGCAGACGATGATGA 59.897 50.000 18.32 9.30 43.93 2.92
5119 5824 0.932399 CATGCGCAGACGATGATGAA 59.068 50.000 18.32 0.00 43.93 2.57
5120 5825 0.933097 ATGCGCAGACGATGATGAAC 59.067 50.000 18.32 0.00 43.93 3.18
5121 5826 0.389687 TGCGCAGACGATGATGAACA 60.390 50.000 5.66 0.00 43.93 3.18
5122 5827 0.933097 GCGCAGACGATGATGAACAT 59.067 50.000 0.30 0.00 43.93 2.71
5133 5838 5.274881 GATGATGAACATCGATACCAAGC 57.725 43.478 0.00 0.00 44.46 4.01
5134 5839 4.135747 TGATGAACATCGATACCAAGCA 57.864 40.909 0.00 0.00 40.63 3.91
5135 5840 3.871006 TGATGAACATCGATACCAAGCAC 59.129 43.478 0.00 0.00 40.63 4.40
5136 5841 2.267426 TGAACATCGATACCAAGCACG 58.733 47.619 0.00 0.00 0.00 5.34
5137 5842 2.268298 GAACATCGATACCAAGCACGT 58.732 47.619 0.00 0.00 0.00 4.49
5138 5843 1.640428 ACATCGATACCAAGCACGTG 58.360 50.000 12.28 12.28 0.00 4.49
5139 5844 1.067142 ACATCGATACCAAGCACGTGT 60.067 47.619 18.38 0.68 0.00 4.49
5140 5845 1.999735 CATCGATACCAAGCACGTGTT 59.000 47.619 18.38 8.60 0.00 3.32
5141 5846 1.705256 TCGATACCAAGCACGTGTTC 58.295 50.000 18.38 0.57 0.00 3.18
5142 5847 1.000052 TCGATACCAAGCACGTGTTCA 60.000 47.619 18.38 0.00 0.00 3.18
5143 5848 1.795872 CGATACCAAGCACGTGTTCAA 59.204 47.619 18.38 0.00 0.00 2.69
5144 5849 2.411031 CGATACCAAGCACGTGTTCAAC 60.411 50.000 18.38 0.00 0.00 3.18
5158 5863 5.544738 GTGTTCAACGAAATGTCATGTTG 57.455 39.130 7.78 7.78 42.25 3.33
5159 5864 5.270083 GTGTTCAACGAAATGTCATGTTGA 58.730 37.500 11.31 11.31 46.33 3.18
5160 5865 5.914635 GTGTTCAACGAAATGTCATGTTGAT 59.085 36.000 14.56 0.00 46.94 2.57
5161 5866 7.075121 GTGTTCAACGAAATGTCATGTTGATA 58.925 34.615 14.56 7.49 46.94 2.15
5162 5867 7.589587 GTGTTCAACGAAATGTCATGTTGATAA 59.410 33.333 14.56 6.73 46.94 1.75
5163 5868 8.131731 TGTTCAACGAAATGTCATGTTGATAAA 58.868 29.630 14.56 2.35 46.94 1.40
5164 5869 8.963130 GTTCAACGAAATGTCATGTTGATAAAA 58.037 29.630 14.56 2.08 46.94 1.52
5165 5870 9.521503 TTCAACGAAATGTCATGTTGATAAAAA 57.478 25.926 14.56 1.81 46.94 1.94
5184 5889 5.664294 AAAAACGGTTTCCCTTTGTACTT 57.336 34.783 6.57 0.00 0.00 2.24
5185 5890 5.664294 AAAACGGTTTCCCTTTGTACTTT 57.336 34.783 6.57 0.00 0.00 2.66
5186 5891 4.642445 AACGGTTTCCCTTTGTACTTTG 57.358 40.909 0.00 0.00 0.00 2.77
5187 5892 2.953648 ACGGTTTCCCTTTGTACTTTGG 59.046 45.455 0.00 0.00 0.00 3.28
5188 5893 2.953648 CGGTTTCCCTTTGTACTTTGGT 59.046 45.455 0.00 0.00 0.00 3.67
5189 5894 3.382227 CGGTTTCCCTTTGTACTTTGGTT 59.618 43.478 0.00 0.00 0.00 3.67
5190 5895 4.142116 CGGTTTCCCTTTGTACTTTGGTTT 60.142 41.667 0.00 0.00 0.00 3.27
5191 5896 5.624967 CGGTTTCCCTTTGTACTTTGGTTTT 60.625 40.000 0.00 0.00 0.00 2.43
5192 5897 6.174760 GGTTTCCCTTTGTACTTTGGTTTTT 58.825 36.000 0.00 0.00 0.00 1.94
5193 5898 7.329499 GGTTTCCCTTTGTACTTTGGTTTTTA 58.671 34.615 0.00 0.00 0.00 1.52
5194 5899 7.493320 GGTTTCCCTTTGTACTTTGGTTTTTAG 59.507 37.037 0.00 0.00 0.00 1.85
5195 5900 6.718522 TCCCTTTGTACTTTGGTTTTTAGG 57.281 37.500 0.00 0.00 0.00 2.69
5196 5901 6.196434 TCCCTTTGTACTTTGGTTTTTAGGT 58.804 36.000 0.00 0.00 0.00 3.08
5197 5902 6.668718 TCCCTTTGTACTTTGGTTTTTAGGTT 59.331 34.615 0.00 0.00 0.00 3.50
5198 5903 6.982141 CCCTTTGTACTTTGGTTTTTAGGTTC 59.018 38.462 0.00 0.00 0.00 3.62
5199 5904 7.363968 CCCTTTGTACTTTGGTTTTTAGGTTCA 60.364 37.037 0.00 0.00 0.00 3.18
5200 5905 7.490079 CCTTTGTACTTTGGTTTTTAGGTTCAC 59.510 37.037 0.00 0.00 0.00 3.18
5201 5906 7.706100 TTGTACTTTGGTTTTTAGGTTCACT 57.294 32.000 0.00 0.00 0.00 3.41
5202 5907 8.804912 TTGTACTTTGGTTTTTAGGTTCACTA 57.195 30.769 0.00 0.00 0.00 2.74
5203 5908 8.441312 TGTACTTTGGTTTTTAGGTTCACTAG 57.559 34.615 0.00 0.00 32.16 2.57
5204 5909 8.266473 TGTACTTTGGTTTTTAGGTTCACTAGA 58.734 33.333 0.00 0.00 32.16 2.43
5205 5910 9.281371 GTACTTTGGTTTTTAGGTTCACTAGAT 57.719 33.333 0.00 0.00 32.16 1.98
5206 5911 8.166422 ACTTTGGTTTTTAGGTTCACTAGATG 57.834 34.615 0.00 0.00 32.16 2.90
5207 5912 7.996644 ACTTTGGTTTTTAGGTTCACTAGATGA 59.003 33.333 0.00 0.00 34.65 2.92
5208 5913 7.739498 TTGGTTTTTAGGTTCACTAGATGAC 57.261 36.000 0.00 0.00 36.92 3.06
5209 5914 7.074653 TGGTTTTTAGGTTCACTAGATGACT 57.925 36.000 0.00 0.00 36.92 3.41
5210 5915 7.159372 TGGTTTTTAGGTTCACTAGATGACTC 58.841 38.462 0.00 0.00 36.92 3.36
5211 5916 6.310711 GGTTTTTAGGTTCACTAGATGACTCG 59.689 42.308 0.00 0.00 36.92 4.18
5212 5917 6.585695 TTTTAGGTTCACTAGATGACTCGT 57.414 37.500 0.00 0.00 36.92 4.18
5213 5918 6.585695 TTTAGGTTCACTAGATGACTCGTT 57.414 37.500 0.00 0.00 36.92 3.85
5214 5919 4.442375 AGGTTCACTAGATGACTCGTTG 57.558 45.455 0.00 0.00 36.92 4.10
5215 5920 2.924290 GGTTCACTAGATGACTCGTTGC 59.076 50.000 0.00 0.00 36.92 4.17
5216 5921 2.544480 TCACTAGATGACTCGTTGCG 57.456 50.000 0.00 0.00 29.99 4.85
5217 5922 0.917259 CACTAGATGACTCGTTGCGC 59.083 55.000 0.00 0.00 0.00 6.09
5218 5923 0.179134 ACTAGATGACTCGTTGCGCC 60.179 55.000 4.18 0.00 0.00 6.53
5219 5924 0.179137 CTAGATGACTCGTTGCGCCA 60.179 55.000 4.18 0.00 0.00 5.69
5220 5925 0.245266 TAGATGACTCGTTGCGCCAA 59.755 50.000 4.18 0.00 0.00 4.52
5221 5926 0.391661 AGATGACTCGTTGCGCCAAT 60.392 50.000 4.18 0.00 0.00 3.16
5222 5927 0.247814 GATGACTCGTTGCGCCAATG 60.248 55.000 4.18 5.17 0.00 2.82
5223 5928 1.647545 ATGACTCGTTGCGCCAATGG 61.648 55.000 4.18 0.00 31.92 3.16
5224 5929 3.667429 GACTCGTTGCGCCAATGGC 62.667 63.158 15.52 15.52 46.75 4.40
5253 5958 1.482593 CGAGAGGGAGCCAAGTATTGT 59.517 52.381 0.00 0.00 46.99 2.71
5254 5959 2.739932 CGAGAGGGAGCCAAGTATTGTG 60.740 54.545 0.00 0.00 46.99 3.33
5255 5960 2.501723 GAGAGGGAGCCAAGTATTGTGA 59.498 50.000 0.00 0.00 46.99 3.58
5256 5961 2.503356 AGAGGGAGCCAAGTATTGTGAG 59.497 50.000 0.00 0.00 46.99 3.51
5257 5962 2.501723 GAGGGAGCCAAGTATTGTGAGA 59.498 50.000 0.00 0.00 46.99 3.27
5258 5963 2.912956 AGGGAGCCAAGTATTGTGAGAA 59.087 45.455 0.00 0.00 46.99 2.87
5259 5964 3.525199 AGGGAGCCAAGTATTGTGAGAAT 59.475 43.478 0.00 0.00 46.99 2.40
5260 5965 4.721776 AGGGAGCCAAGTATTGTGAGAATA 59.278 41.667 0.00 0.00 46.99 1.75
5261 5966 5.370880 AGGGAGCCAAGTATTGTGAGAATAT 59.629 40.000 0.00 0.00 46.99 1.28
5262 5967 6.064717 GGGAGCCAAGTATTGTGAGAATATT 58.935 40.000 0.00 0.00 46.99 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067669 TCCCGAGATGCAGATCGAAAG 59.932 52.381 21.19 11.46 41.40 2.62
1 2 1.067669 CTCCCGAGATGCAGATCGAAA 59.932 52.381 21.19 9.99 41.40 3.46
2 3 0.670706 CTCCCGAGATGCAGATCGAA 59.329 55.000 21.19 10.28 41.40 3.71
3 4 0.179018 TCTCCCGAGATGCAGATCGA 60.179 55.000 21.19 5.08 41.40 3.59
4 5 0.240678 CTCTCCCGAGATGCAGATCG 59.759 60.000 14.59 14.59 39.74 3.69
5 6 0.602562 CCTCTCCCGAGATGCAGATC 59.397 60.000 0.00 0.00 39.74 2.75
6 7 0.831288 CCCTCTCCCGAGATGCAGAT 60.831 60.000 0.00 0.00 39.74 2.90
7 8 1.456518 CCCTCTCCCGAGATGCAGA 60.457 63.158 0.00 0.00 39.74 4.26
8 9 3.136750 CCCTCTCCCGAGATGCAG 58.863 66.667 0.00 0.00 39.74 4.41
9 10 3.157252 GCCCTCTCCCGAGATGCA 61.157 66.667 10.06 0.00 39.74 3.96
10 11 3.934962 GGCCCTCTCCCGAGATGC 61.935 72.222 0.00 7.50 39.74 3.91
72 73 2.628657 AGTTATCCGTGTGCTATCCTCC 59.371 50.000 0.00 0.00 0.00 4.30
73 74 3.318275 TCAGTTATCCGTGTGCTATCCTC 59.682 47.826 0.00 0.00 0.00 3.71
74 75 3.296854 TCAGTTATCCGTGTGCTATCCT 58.703 45.455 0.00 0.00 0.00 3.24
75 76 3.318275 TCTCAGTTATCCGTGTGCTATCC 59.682 47.826 0.00 0.00 0.00 2.59
93 94 3.176411 TGAGGAAGATTCAAGGCTCTCA 58.824 45.455 0.00 0.00 0.00 3.27
191 196 1.068588 GGGTTTTGTTTGAGTGGGCTC 59.931 52.381 0.00 0.00 41.97 4.70
242 700 0.544223 TGGAGAGAGACGAGGAGGAG 59.456 60.000 0.00 0.00 0.00 3.69
245 703 0.393673 TGCTGGAGAGAGACGAGGAG 60.394 60.000 0.00 0.00 0.00 3.69
248 706 0.451383 CAGTGCTGGAGAGAGACGAG 59.549 60.000 0.00 0.00 0.00 4.18
474 936 2.434185 GCCATTGTCGTCCTCGCA 60.434 61.111 0.00 0.00 36.96 5.10
538 1001 3.922375 TGGTTGGGAGGAAATTGAACTT 58.078 40.909 0.00 0.00 0.00 2.66
568 1031 1.582391 GCCGCGTTTCGTTTCGTTTC 61.582 55.000 4.92 0.00 36.19 2.78
574 1037 1.908066 GAGGATGCCGCGTTTCGTTT 61.908 55.000 4.92 0.00 36.19 3.60
575 1038 2.358247 AGGATGCCGCGTTTCGTT 60.358 55.556 4.92 0.00 36.19 3.85
576 1039 2.813908 GAGGATGCCGCGTTTCGT 60.814 61.111 4.92 0.00 36.19 3.85
577 1040 2.509336 AGAGGATGCCGCGTTTCG 60.509 61.111 4.92 0.00 38.08 3.46
578 1041 2.174319 GGAGAGGATGCCGCGTTTC 61.174 63.158 4.92 0.00 0.00 2.78
663 1130 0.590195 CATGGGCAGCGAGATAAAGC 59.410 55.000 0.00 0.00 0.00 3.51
665 1132 1.475034 GGACATGGGCAGCGAGATAAA 60.475 52.381 0.00 0.00 0.00 1.40
713 1183 1.354040 CACTTTCTGCACGCTCCTAG 58.646 55.000 0.00 0.00 0.00 3.02
714 1184 0.037326 CCACTTTCTGCACGCTCCTA 60.037 55.000 0.00 0.00 0.00 2.94
715 1185 1.302033 CCACTTTCTGCACGCTCCT 60.302 57.895 0.00 0.00 0.00 3.69
830 1305 2.143122 GATCGAACAGACACAAAGGCA 58.857 47.619 0.00 0.00 0.00 4.75
871 1347 4.640789 AGCAGAATCTAGTACTGGAACG 57.359 45.455 13.39 3.51 33.00 3.95
1114 1591 9.823647 TTATTTGTTGATGAGTAGAAGAGGATC 57.176 33.333 0.00 0.00 0.00 3.36
1187 1664 3.786368 TGACCTGAATCAATGACACCA 57.214 42.857 0.00 0.00 0.00 4.17
1208 1685 3.662759 AGAAGTCCTTCCACAACCAAA 57.337 42.857 3.47 0.00 40.33 3.28
1375 1897 6.584563 GCGGAGATTAAAATGCAAACTGTTAA 59.415 34.615 0.00 0.00 0.00 2.01
1454 1976 5.596845 GTCAATATGAGACCTCTCCTTGAC 58.403 45.833 17.63 17.63 42.10 3.18
1468 1990 6.823286 TCTAAGATTGGTGGGTCAATATGA 57.177 37.500 0.00 0.00 37.47 2.15
1471 1993 6.011981 ACCTTTCTAAGATTGGTGGGTCAATA 60.012 38.462 0.00 0.00 37.47 1.90
1489 2011 4.074970 CAATAAGCCACACAGACCTTTCT 58.925 43.478 0.00 0.00 0.00 2.52
1541 2063 6.094742 TGCACAGACACAGACAGAAAAATAAA 59.905 34.615 0.00 0.00 0.00 1.40
1543 2065 5.122519 TGCACAGACACAGACAGAAAAATA 58.877 37.500 0.00 0.00 0.00 1.40
1544 2066 3.947196 TGCACAGACACAGACAGAAAAAT 59.053 39.130 0.00 0.00 0.00 1.82
1545 2067 3.342719 TGCACAGACACAGACAGAAAAA 58.657 40.909 0.00 0.00 0.00 1.94
1562 2084 2.989422 ACGCTTCCTTGTAATTGCAC 57.011 45.000 0.00 0.00 0.00 4.57
1837 2452 8.498054 ACCACATACAAACAATCTCTAGAATG 57.502 34.615 0.00 0.00 0.00 2.67
1879 2494 4.095211 TCCATGGATCAAAGCAAATGGAA 58.905 39.130 11.44 0.00 40.36 3.53
1918 2533 9.840427 GTAATTGTAACTTGCTCATGTTGTAAT 57.160 29.630 10.29 8.10 32.10 1.89
2000 2615 5.251700 ACCCTCAAAAGTCAGGACTGATTAT 59.748 40.000 5.19 0.00 41.58 1.28
2617 3238 7.173218 TGAGGTATAAGCTGTGAAACTGAAAAG 59.827 37.037 0.00 0.00 38.12 2.27
2784 3405 3.136763 AGCGAGTGAAGCCATATCATTG 58.863 45.455 0.00 0.00 34.64 2.82
3255 3890 6.145048 CACAATGCAAGGAAAATCTCAGAAAC 59.855 38.462 0.00 0.00 0.00 2.78
3310 3945 2.624838 AGCTAATGCATTTCCCATTCCG 59.375 45.455 18.75 0.00 42.74 4.30
3686 4321 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3687 4322 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3688 4323 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3689 4324 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
3690 4325 5.120830 CCAAGACACTTATTTTGAGACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
3691 4326 4.994852 CCAAGACACTTATTTTGAGACGGA 59.005 41.667 0.00 0.00 0.00 4.69
3692 4327 4.755123 ACCAAGACACTTATTTTGAGACGG 59.245 41.667 0.00 0.00 0.00 4.79
3694 4329 9.665264 CTAAAACCAAGACACTTATTTTGAGAC 57.335 33.333 0.00 0.00 0.00 3.36
3695 4330 9.403583 ACTAAAACCAAGACACTTATTTTGAGA 57.596 29.630 0.00 0.00 0.00 3.27
3698 4333 9.796120 TGAACTAAAACCAAGACACTTATTTTG 57.204 29.630 0.00 0.00 0.00 2.44
3705 4340 9.185680 ACTAAAATGAACTAAAACCAAGACACT 57.814 29.630 0.00 0.00 0.00 3.55
3706 4341 9.797556 AACTAAAATGAACTAAAACCAAGACAC 57.202 29.630 0.00 0.00 0.00 3.67
3731 4366 9.482627 AGTGTTGTGTTTTAGTTCAAATTTGAA 57.517 25.926 26.01 26.01 44.31 2.69
3732 4367 9.482627 AAGTGTTGTGTTTTAGTTCAAATTTGA 57.517 25.926 16.91 16.91 34.92 2.69
3739 4374 9.360093 CCAAAATAAGTGTTGTGTTTTAGTTCA 57.640 29.630 0.00 0.00 0.00 3.18
3740 4375 8.813282 CCCAAAATAAGTGTTGTGTTTTAGTTC 58.187 33.333 0.00 0.00 0.00 3.01
3741 4376 7.766738 CCCCAAAATAAGTGTTGTGTTTTAGTT 59.233 33.333 0.00 0.00 0.00 2.24
3742 4377 7.093245 ACCCCAAAATAAGTGTTGTGTTTTAGT 60.093 33.333 0.00 0.00 0.00 2.24
3743 4378 7.223777 CACCCCAAAATAAGTGTTGTGTTTTAG 59.776 37.037 0.00 0.00 0.00 1.85
3744 4379 7.042335 CACCCCAAAATAAGTGTTGTGTTTTA 58.958 34.615 0.00 0.00 0.00 1.52
3745 4380 5.877564 CACCCCAAAATAAGTGTTGTGTTTT 59.122 36.000 0.00 0.00 0.00 2.43
3746 4381 5.423886 CACCCCAAAATAAGTGTTGTGTTT 58.576 37.500 0.00 0.00 0.00 2.83
3747 4382 4.141824 CCACCCCAAAATAAGTGTTGTGTT 60.142 41.667 0.00 0.00 0.00 3.32
3748 4383 3.386402 CCACCCCAAAATAAGTGTTGTGT 59.614 43.478 0.00 0.00 0.00 3.72
3749 4384 3.639094 TCCACCCCAAAATAAGTGTTGTG 59.361 43.478 0.00 0.00 0.00 3.33
3750 4385 3.895041 CTCCACCCCAAAATAAGTGTTGT 59.105 43.478 0.00 0.00 0.00 3.32
3751 4386 3.258123 CCTCCACCCCAAAATAAGTGTTG 59.742 47.826 0.00 0.00 0.00 3.33
3752 4387 3.506398 CCTCCACCCCAAAATAAGTGTT 58.494 45.455 0.00 0.00 0.00 3.32
3753 4388 2.225267 CCCTCCACCCCAAAATAAGTGT 60.225 50.000 0.00 0.00 0.00 3.55
3754 4389 2.042433 TCCCTCCACCCCAAAATAAGTG 59.958 50.000 0.00 0.00 0.00 3.16
3755 4390 2.311841 CTCCCTCCACCCCAAAATAAGT 59.688 50.000 0.00 0.00 0.00 2.24
3756 4391 2.311841 ACTCCCTCCACCCCAAAATAAG 59.688 50.000 0.00 0.00 0.00 1.73
3757 4392 2.364190 ACTCCCTCCACCCCAAAATAA 58.636 47.619 0.00 0.00 0.00 1.40
3758 4393 2.068831 ACTCCCTCCACCCCAAAATA 57.931 50.000 0.00 0.00 0.00 1.40
3759 4394 2.068831 TACTCCCTCCACCCCAAAAT 57.931 50.000 0.00 0.00 0.00 1.82
3760 4395 1.638589 CATACTCCCTCCACCCCAAAA 59.361 52.381 0.00 0.00 0.00 2.44
3761 4396 1.295020 CATACTCCCTCCACCCCAAA 58.705 55.000 0.00 0.00 0.00 3.28
3762 4397 0.120377 ACATACTCCCTCCACCCCAA 59.880 55.000 0.00 0.00 0.00 4.12
3763 4398 0.620410 CACATACTCCCTCCACCCCA 60.620 60.000 0.00 0.00 0.00 4.96
3764 4399 0.620700 ACACATACTCCCTCCACCCC 60.621 60.000 0.00 0.00 0.00 4.95
3765 4400 0.541863 CACACATACTCCCTCCACCC 59.458 60.000 0.00 0.00 0.00 4.61
3766 4401 1.568504 TCACACATACTCCCTCCACC 58.431 55.000 0.00 0.00 0.00 4.61
3767 4402 2.567615 ACTTCACACATACTCCCTCCAC 59.432 50.000 0.00 0.00 0.00 4.02
3768 4403 2.902608 ACTTCACACATACTCCCTCCA 58.097 47.619 0.00 0.00 0.00 3.86
3769 4404 3.767673 TGTACTTCACACATACTCCCTCC 59.232 47.826 0.00 0.00 30.04 4.30
3770 4405 4.463186 ACTGTACTTCACACATACTCCCTC 59.537 45.833 0.00 0.00 32.33 4.30
3771 4406 4.417437 ACTGTACTTCACACATACTCCCT 58.583 43.478 0.00 0.00 32.33 4.20
3772 4407 4.219944 TGACTGTACTTCACACATACTCCC 59.780 45.833 0.00 0.00 32.33 4.30
3773 4408 5.386958 TGACTGTACTTCACACATACTCC 57.613 43.478 0.00 0.00 32.33 3.85
3774 4409 5.403246 CCTGACTGTACTTCACACATACTC 58.597 45.833 0.00 0.00 32.33 2.59
3775 4410 4.322049 GCCTGACTGTACTTCACACATACT 60.322 45.833 0.00 0.00 32.33 2.12
3776 4411 3.927142 GCCTGACTGTACTTCACACATAC 59.073 47.826 0.00 0.00 32.33 2.39
3777 4412 3.576550 TGCCTGACTGTACTTCACACATA 59.423 43.478 0.00 0.00 32.33 2.29
3778 4413 2.368548 TGCCTGACTGTACTTCACACAT 59.631 45.455 0.00 0.00 32.33 3.21
3779 4414 1.760029 TGCCTGACTGTACTTCACACA 59.240 47.619 0.00 0.00 32.33 3.72
3780 4415 2.526304 TGCCTGACTGTACTTCACAC 57.474 50.000 0.00 0.00 32.33 3.82
3794 4429 4.902308 CATGTTGTGGCATGCCTG 57.098 55.556 35.53 21.27 39.59 4.85
3812 4447 0.543749 AGGGGCAGCTAGCTAACAAG 59.456 55.000 18.86 5.71 44.79 3.16
3828 4463 0.405585 AATCAAGGTGGTGACCAGGG 59.594 55.000 3.58 0.00 45.98 4.45
3860 4495 0.528017 TCTGACAGTCCTGCGATCAC 59.472 55.000 1.59 0.00 0.00 3.06
3909 4549 0.809385 GAAGACGATCGGTGACAGGA 59.191 55.000 20.98 0.00 0.00 3.86
3949 4589 1.003233 GTCAGTGGCCAGAGAACCC 60.003 63.158 5.11 0.00 0.00 4.11
4031 4671 7.594758 GCTTATGAAAGTTGATGTAAAGTGCAA 59.405 33.333 0.00 0.00 34.99 4.08
4036 4676 7.269084 CGTGTGCTTATGAAAGTTGATGTAAAG 59.731 37.037 0.00 0.00 34.99 1.85
4062 4702 0.534203 TGGAGGAAAGGCGTGTGAAC 60.534 55.000 0.00 0.00 0.00 3.18
4103 4745 2.270352 TCGAGGCCACAATGAAAACT 57.730 45.000 5.01 0.00 0.00 2.66
4319 4962 2.185004 ACACGCAATCAGCCTTTAGT 57.815 45.000 0.00 0.00 41.38 2.24
4333 4976 6.372185 TGTTATGTACATTTACCAAACACGC 58.628 36.000 14.77 0.00 31.67 5.34
4522 5205 4.268359 TGGCTGTATGCATGTGTATTCAA 58.732 39.130 10.16 0.00 45.15 2.69
4534 5217 4.285292 CGAGAAAAATGATGGCTGTATGC 58.715 43.478 0.00 0.00 41.94 3.14
4537 5220 4.214986 TCCGAGAAAAATGATGGCTGTA 57.785 40.909 0.00 0.00 0.00 2.74
4541 5224 3.608073 CGTTTTCCGAGAAAAATGATGGC 59.392 43.478 11.69 0.87 37.32 4.40
4556 5239 5.005875 GCTAGAGTTGCTCTTATCGTTTTCC 59.994 44.000 3.87 0.00 41.50 3.13
4569 5269 1.190643 GGGAGTCTGCTAGAGTTGCT 58.809 55.000 0.00 0.00 0.00 3.91
4584 5286 5.767168 ACAGAGTTTCTTTTCATCTTGGGAG 59.233 40.000 0.00 0.00 0.00 4.30
4593 5295 9.621629 TGTCCTTTATAACAGAGTTTCTTTTCA 57.378 29.630 0.00 0.00 0.00 2.69
4632 5337 4.202070 GCTTTAGAGAATCCGCTAGACTGT 60.202 45.833 0.00 0.00 33.66 3.55
4635 5340 3.003482 TCGCTTTAGAGAATCCGCTAGAC 59.997 47.826 0.00 0.00 33.66 2.59
4785 5490 3.513515 AGTAGCTGACAGGAAGAAAGAGG 59.486 47.826 4.26 0.00 0.00 3.69
4799 5504 0.683504 GGAACGGAGGGAGTAGCTGA 60.684 60.000 0.00 0.00 0.00 4.26
4801 5506 0.032017 ATGGAACGGAGGGAGTAGCT 60.032 55.000 0.00 0.00 0.00 3.32
4807 5512 6.320518 AGTTATCTATTATGGAACGGAGGGA 58.679 40.000 0.00 0.00 0.00 4.20
4808 5513 6.210784 TGAGTTATCTATTATGGAACGGAGGG 59.789 42.308 0.00 0.00 0.00 4.30
4809 5514 7.228314 TGAGTTATCTATTATGGAACGGAGG 57.772 40.000 0.00 0.00 0.00 4.30
4810 5515 8.361139 AGTTGAGTTATCTATTATGGAACGGAG 58.639 37.037 0.00 0.00 0.00 4.63
4811 5516 8.246430 AGTTGAGTTATCTATTATGGAACGGA 57.754 34.615 0.00 0.00 0.00 4.69
4812 5517 8.888579 AAGTTGAGTTATCTATTATGGAACGG 57.111 34.615 0.00 0.00 0.00 4.44
4828 5533 9.662947 AGTACAAAGTTAGTACAAAGTTGAGTT 57.337 29.630 6.30 0.00 43.24 3.01
4849 5554 9.850198 ACCCAACTTTACACTAATTTTAGTACA 57.150 29.630 2.79 0.00 41.82 2.90
4852 5557 8.983702 TGACCCAACTTTACACTAATTTTAGT 57.016 30.769 0.00 0.00 44.42 2.24
4854 5559 9.802039 AGATGACCCAACTTTACACTAATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
4855 5560 8.706322 AGATGACCCAACTTTACACTAATTTT 57.294 30.769 0.00 0.00 0.00 1.82
4856 5561 9.975218 ATAGATGACCCAACTTTACACTAATTT 57.025 29.630 0.00 0.00 0.00 1.82
4857 5562 9.975218 AATAGATGACCCAACTTTACACTAATT 57.025 29.630 0.00 0.00 0.00 1.40
4858 5563 9.975218 AAATAGATGACCCAACTTTACACTAAT 57.025 29.630 0.00 0.00 0.00 1.73
4859 5564 9.802039 AAAATAGATGACCCAACTTTACACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4860 5565 9.226606 CAAAATAGATGACCCAACTTTACACTA 57.773 33.333 0.00 0.00 0.00 2.74
4861 5566 7.176690 CCAAAATAGATGACCCAACTTTACACT 59.823 37.037 0.00 0.00 0.00 3.55
4862 5567 7.175990 TCCAAAATAGATGACCCAACTTTACAC 59.824 37.037 0.00 0.00 0.00 2.90
4863 5568 7.235079 TCCAAAATAGATGACCCAACTTTACA 58.765 34.615 0.00 0.00 0.00 2.41
4864 5569 7.696992 TCCAAAATAGATGACCCAACTTTAC 57.303 36.000 0.00 0.00 0.00 2.01
4865 5570 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
4866 5571 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4867 5572 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4868 5573 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4869 5574 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4870 5575 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4871 5576 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4872 5577 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4873 5578 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4874 5579 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4875 5580 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4876 5581 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4877 5582 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4878 5583 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4879 5584 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4880 5585 3.119029 CGTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
4881 5586 2.354403 CGTACTCCCTCCGTTCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
4882 5587 1.001181 CGTACTCCCTCCGTTCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
4883 5588 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
4884 5589 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
4885 5590 0.962356 GACGTACTCCCTCCGTTCCA 60.962 60.000 0.00 0.00 34.51 3.53
4886 5591 0.962356 TGACGTACTCCCTCCGTTCC 60.962 60.000 0.00 0.00 34.51 3.62
4887 5592 0.169894 GTGACGTACTCCCTCCGTTC 59.830 60.000 0.00 0.00 34.51 3.95
4888 5593 0.251077 AGTGACGTACTCCCTCCGTT 60.251 55.000 0.00 0.00 33.17 4.44
4889 5594 0.959372 CAGTGACGTACTCCCTCCGT 60.959 60.000 0.00 0.00 37.60 4.69
4890 5595 1.801332 CAGTGACGTACTCCCTCCG 59.199 63.158 0.00 0.00 37.60 4.63
4891 5596 1.248785 TGCAGTGACGTACTCCCTCC 61.249 60.000 0.00 0.00 37.60 4.30
4892 5597 0.601558 TTGCAGTGACGTACTCCCTC 59.398 55.000 0.00 0.00 37.60 4.30
4893 5598 1.267121 ATTGCAGTGACGTACTCCCT 58.733 50.000 0.00 0.00 37.60 4.20
4894 5599 1.732259 CAATTGCAGTGACGTACTCCC 59.268 52.381 0.00 0.00 37.60 4.30
4895 5600 2.413837 ACAATTGCAGTGACGTACTCC 58.586 47.619 5.05 0.00 37.60 3.85
4896 5601 3.799035 CAACAATTGCAGTGACGTACTC 58.201 45.455 5.05 0.00 37.60 2.59
4897 5602 3.878086 CAACAATTGCAGTGACGTACT 57.122 42.857 5.05 0.00 41.36 2.73
4909 5614 2.504681 GAGGCGGCGCAACAATTG 60.505 61.111 34.36 3.24 0.00 2.32
4910 5615 3.747976 GGAGGCGGCGCAACAATT 61.748 61.111 34.36 10.99 0.00 2.32
4922 5627 4.792804 GTGGAGGCAGCTGGAGGC 62.793 72.222 17.12 1.20 42.19 4.70
4923 5628 4.106925 GGTGGAGGCAGCTGGAGG 62.107 72.222 17.12 0.00 0.00 4.30
4924 5629 4.463879 CGGTGGAGGCAGCTGGAG 62.464 72.222 17.12 0.00 0.00 3.86
4926 5631 4.767255 GTCGGTGGAGGCAGCTGG 62.767 72.222 17.12 0.00 0.00 4.85
4930 5635 3.343788 GAGTCGTCGGTGGAGGCAG 62.344 68.421 0.00 0.00 0.00 4.85
4931 5636 3.371063 GAGTCGTCGGTGGAGGCA 61.371 66.667 0.00 0.00 0.00 4.75
4932 5637 4.131088 GGAGTCGTCGGTGGAGGC 62.131 72.222 0.00 0.00 0.00 4.70
4933 5638 2.052690 ATGGAGTCGTCGGTGGAGG 61.053 63.158 0.00 0.00 0.00 4.30
4934 5639 1.139734 CATGGAGTCGTCGGTGGAG 59.860 63.158 0.00 0.00 0.00 3.86
4935 5640 2.348104 CCATGGAGTCGTCGGTGGA 61.348 63.158 5.56 0.00 32.29 4.02
4936 5641 2.184322 CCATGGAGTCGTCGGTGG 59.816 66.667 5.56 0.00 0.00 4.61
4937 5642 2.509336 GCCATGGAGTCGTCGGTG 60.509 66.667 18.40 0.00 0.00 4.94
4938 5643 4.129737 CGCCATGGAGTCGTCGGT 62.130 66.667 18.40 0.00 0.00 4.69
4939 5644 3.350909 TTCGCCATGGAGTCGTCGG 62.351 63.158 18.40 0.00 0.00 4.79
4940 5645 1.874019 CTTCGCCATGGAGTCGTCG 60.874 63.158 18.40 8.53 0.00 5.12
4941 5646 1.519455 CCTTCGCCATGGAGTCGTC 60.519 63.158 18.40 0.00 0.00 4.20
4942 5647 2.579201 CCTTCGCCATGGAGTCGT 59.421 61.111 18.40 0.00 0.00 4.34
4943 5648 2.202932 CCCTTCGCCATGGAGTCG 60.203 66.667 18.40 10.19 0.00 4.18
4944 5649 2.514824 GCCCTTCGCCATGGAGTC 60.515 66.667 18.40 0.00 0.00 3.36
4945 5650 3.329889 TGCCCTTCGCCATGGAGT 61.330 61.111 18.40 0.00 36.24 3.85
4946 5651 2.825836 GTGCCCTTCGCCATGGAG 60.826 66.667 18.40 13.80 36.24 3.86
4947 5652 4.776322 CGTGCCCTTCGCCATGGA 62.776 66.667 18.40 0.00 36.24 3.41
4953 5658 3.723348 GTTCACCGTGCCCTTCGC 61.723 66.667 0.00 0.00 38.31 4.70
4954 5659 3.047877 GGTTCACCGTGCCCTTCG 61.048 66.667 0.00 0.00 0.00 3.79
4964 5669 2.032924 CACCTTCTTGTTTCGGTTCACC 59.967 50.000 0.00 0.00 0.00 4.02
4965 5670 2.940410 TCACCTTCTTGTTTCGGTTCAC 59.060 45.455 0.00 0.00 0.00 3.18
4966 5671 3.269538 TCACCTTCTTGTTTCGGTTCA 57.730 42.857 0.00 0.00 0.00 3.18
4967 5672 3.375922 TGTTCACCTTCTTGTTTCGGTTC 59.624 43.478 0.00 0.00 0.00 3.62
4968 5673 3.128068 GTGTTCACCTTCTTGTTTCGGTT 59.872 43.478 0.00 0.00 0.00 4.44
4969 5674 2.681344 GTGTTCACCTTCTTGTTTCGGT 59.319 45.455 0.00 0.00 0.00 4.69
4970 5675 2.943033 AGTGTTCACCTTCTTGTTTCGG 59.057 45.455 0.00 0.00 0.00 4.30
4971 5676 3.871594 AGAGTGTTCACCTTCTTGTTTCG 59.128 43.478 0.00 0.00 0.00 3.46
4972 5677 4.876107 TGAGAGTGTTCACCTTCTTGTTTC 59.124 41.667 0.00 0.00 0.00 2.78
4973 5678 4.636206 GTGAGAGTGTTCACCTTCTTGTTT 59.364 41.667 0.00 0.00 41.24 2.83
4974 5679 4.192317 GTGAGAGTGTTCACCTTCTTGTT 58.808 43.478 0.00 0.00 41.24 2.83
4975 5680 3.738281 CGTGAGAGTGTTCACCTTCTTGT 60.738 47.826 0.00 0.00 43.56 3.16
4976 5681 2.797156 CGTGAGAGTGTTCACCTTCTTG 59.203 50.000 0.00 0.00 43.56 3.02
4977 5682 2.803492 GCGTGAGAGTGTTCACCTTCTT 60.803 50.000 0.00 0.00 43.56 2.52
4978 5683 1.269831 GCGTGAGAGTGTTCACCTTCT 60.270 52.381 0.00 0.00 43.56 2.85
4979 5684 1.140816 GCGTGAGAGTGTTCACCTTC 58.859 55.000 0.00 0.00 43.56 3.46
4980 5685 0.464036 TGCGTGAGAGTGTTCACCTT 59.536 50.000 0.00 0.00 43.56 3.50
4981 5686 0.249489 GTGCGTGAGAGTGTTCACCT 60.249 55.000 0.00 0.00 43.56 4.00
4982 5687 1.222115 GGTGCGTGAGAGTGTTCACC 61.222 60.000 0.00 0.00 43.56 4.02
4983 5688 1.222115 GGGTGCGTGAGAGTGTTCAC 61.222 60.000 0.00 0.00 43.14 3.18
4984 5689 1.069090 GGGTGCGTGAGAGTGTTCA 59.931 57.895 0.00 0.00 0.00 3.18
4985 5690 1.668151 GGGGTGCGTGAGAGTGTTC 60.668 63.158 0.00 0.00 0.00 3.18
4986 5691 1.768684 ATGGGGTGCGTGAGAGTGTT 61.769 55.000 0.00 0.00 0.00 3.32
4987 5692 2.172483 GATGGGGTGCGTGAGAGTGT 62.172 60.000 0.00 0.00 0.00 3.55
4988 5693 1.448540 GATGGGGTGCGTGAGAGTG 60.449 63.158 0.00 0.00 0.00 3.51
4989 5694 2.660064 GGATGGGGTGCGTGAGAGT 61.660 63.158 0.00 0.00 0.00 3.24
4990 5695 2.187946 GGATGGGGTGCGTGAGAG 59.812 66.667 0.00 0.00 0.00 3.20
4991 5696 3.770040 CGGATGGGGTGCGTGAGA 61.770 66.667 0.00 0.00 36.85 3.27
4992 5697 4.838152 CCGGATGGGGTGCGTGAG 62.838 72.222 0.00 0.00 40.39 3.51
5009 5714 1.757340 CGGAGGAGGGGTAGACACC 60.757 68.421 0.00 0.00 44.96 4.16
5010 5715 0.257039 TACGGAGGAGGGGTAGACAC 59.743 60.000 0.00 0.00 0.00 3.67
5011 5716 0.257039 GTACGGAGGAGGGGTAGACA 59.743 60.000 0.00 0.00 0.00 3.41
5012 5717 0.257039 TGTACGGAGGAGGGGTAGAC 59.743 60.000 0.00 0.00 0.00 2.59
5013 5718 1.144503 GATGTACGGAGGAGGGGTAGA 59.855 57.143 0.00 0.00 0.00 2.59
5014 5719 1.618487 GATGTACGGAGGAGGGGTAG 58.382 60.000 0.00 0.00 0.00 3.18
5015 5720 0.186873 GGATGTACGGAGGAGGGGTA 59.813 60.000 0.00 0.00 0.00 3.69
5016 5721 1.075450 GGATGTACGGAGGAGGGGT 60.075 63.158 0.00 0.00 0.00 4.95
5017 5722 1.837499 GGGATGTACGGAGGAGGGG 60.837 68.421 0.00 0.00 0.00 4.79
5018 5723 0.828343 GAGGGATGTACGGAGGAGGG 60.828 65.000 0.00 0.00 0.00 4.30
5019 5724 0.186386 AGAGGGATGTACGGAGGAGG 59.814 60.000 0.00 0.00 0.00 4.30
5020 5725 1.133761 TCAGAGGGATGTACGGAGGAG 60.134 57.143 0.00 0.00 0.00 3.69
5021 5726 0.924090 TCAGAGGGATGTACGGAGGA 59.076 55.000 0.00 0.00 0.00 3.71
5022 5727 1.033574 GTCAGAGGGATGTACGGAGG 58.966 60.000 0.00 0.00 0.00 4.30
5023 5728 1.033574 GGTCAGAGGGATGTACGGAG 58.966 60.000 0.00 0.00 0.00 4.63
5024 5729 0.396695 GGGTCAGAGGGATGTACGGA 60.397 60.000 0.00 0.00 0.00 4.69
5025 5730 0.686441 TGGGTCAGAGGGATGTACGG 60.686 60.000 0.00 0.00 0.00 4.02
5026 5731 1.134788 GTTGGGTCAGAGGGATGTACG 60.135 57.143 0.00 0.00 0.00 3.67
5027 5732 2.093447 CAGTTGGGTCAGAGGGATGTAC 60.093 54.545 0.00 0.00 0.00 2.90
5028 5733 2.187958 CAGTTGGGTCAGAGGGATGTA 58.812 52.381 0.00 0.00 0.00 2.29
5029 5734 0.987294 CAGTTGGGTCAGAGGGATGT 59.013 55.000 0.00 0.00 0.00 3.06
5030 5735 0.393537 GCAGTTGGGTCAGAGGGATG 60.394 60.000 0.00 0.00 0.00 3.51
5031 5736 1.566298 GGCAGTTGGGTCAGAGGGAT 61.566 60.000 0.00 0.00 0.00 3.85
5032 5737 2.224159 GGCAGTTGGGTCAGAGGGA 61.224 63.158 0.00 0.00 0.00 4.20
5033 5738 2.352805 GGCAGTTGGGTCAGAGGG 59.647 66.667 0.00 0.00 0.00 4.30
5034 5739 2.046892 CGGCAGTTGGGTCAGAGG 60.047 66.667 0.00 0.00 0.00 3.69
5035 5740 2.743928 GCGGCAGTTGGGTCAGAG 60.744 66.667 0.00 0.00 0.00 3.35
5036 5741 4.680237 CGCGGCAGTTGGGTCAGA 62.680 66.667 0.00 0.00 0.00 3.27
5047 5752 4.512961 ATCATCGTCTGCGCGGCA 62.513 61.111 12.58 5.56 38.14 5.69
5048 5753 3.993234 CATCATCGTCTGCGCGGC 61.993 66.667 12.58 5.94 38.14 6.53
5049 5754 1.878069 TTCATCATCGTCTGCGCGG 60.878 57.895 10.86 10.86 38.14 6.46
5050 5755 1.270968 GTTCATCATCGTCTGCGCG 59.729 57.895 0.00 0.00 38.14 6.86
5051 5756 0.933097 ATGTTCATCATCGTCTGCGC 59.067 50.000 0.00 0.00 38.14 6.09
5052 5757 2.918656 GATGTTCATCATCGTCTGCG 57.081 50.000 7.78 0.00 42.57 5.18
5059 5764 3.242543 GCTTGGTGTCGATGTTCATCATC 60.243 47.826 12.34 5.72 46.68 2.92
5060 5765 2.679837 GCTTGGTGTCGATGTTCATCAT 59.320 45.455 12.34 0.00 39.77 2.45
5061 5766 2.076100 GCTTGGTGTCGATGTTCATCA 58.924 47.619 12.34 0.00 0.00 3.07
5062 5767 2.076100 TGCTTGGTGTCGATGTTCATC 58.924 47.619 3.01 3.01 0.00 2.92
5063 5768 1.806542 GTGCTTGGTGTCGATGTTCAT 59.193 47.619 0.00 0.00 0.00 2.57
5064 5769 1.225855 GTGCTTGGTGTCGATGTTCA 58.774 50.000 0.00 0.00 0.00 3.18
5065 5770 0.163788 CGTGCTTGGTGTCGATGTTC 59.836 55.000 0.00 0.00 0.00 3.18
5066 5771 0.531974 ACGTGCTTGGTGTCGATGTT 60.532 50.000 0.00 0.00 0.00 2.71
5067 5772 1.069090 ACGTGCTTGGTGTCGATGT 59.931 52.632 0.00 0.00 0.00 3.06
5068 5773 1.221466 ACACGTGCTTGGTGTCGATG 61.221 55.000 17.22 0.00 44.93 3.84
5069 5774 1.069090 ACACGTGCTTGGTGTCGAT 59.931 52.632 17.22 0.00 44.93 3.59
5070 5775 2.497293 ACACGTGCTTGGTGTCGA 59.503 55.556 17.22 0.00 44.93 4.20
5074 5779 0.588730 CGTTGAACACGTGCTTGGTG 60.589 55.000 17.22 0.00 44.49 4.17
5075 5780 1.719117 CGTTGAACACGTGCTTGGT 59.281 52.632 17.22 0.00 44.49 3.67
5076 5781 4.588084 CGTTGAACACGTGCTTGG 57.412 55.556 17.22 0.00 44.49 3.61
5084 5789 2.651703 CGCATGACATTTCGTTGAACAC 59.348 45.455 0.00 0.00 0.00 3.32
5085 5790 2.914861 CGCATGACATTTCGTTGAACA 58.085 42.857 0.00 0.00 0.00 3.18
5086 5791 1.643810 GCGCATGACATTTCGTTGAAC 59.356 47.619 0.30 0.00 0.00 3.18
5087 5792 1.265365 TGCGCATGACATTTCGTTGAA 59.735 42.857 5.66 0.00 0.00 2.69
5088 5793 0.871057 TGCGCATGACATTTCGTTGA 59.129 45.000 5.66 0.00 0.00 3.18
5089 5794 1.136000 TCTGCGCATGACATTTCGTTG 60.136 47.619 12.24 0.00 0.00 4.10
5090 5795 1.135972 GTCTGCGCATGACATTTCGTT 60.136 47.619 25.27 0.00 34.80 3.85
5091 5796 0.443869 GTCTGCGCATGACATTTCGT 59.556 50.000 25.27 0.00 34.80 3.85
5092 5797 0.584785 CGTCTGCGCATGACATTTCG 60.585 55.000 27.61 16.30 34.37 3.46
5093 5798 0.721154 TCGTCTGCGCATGACATTTC 59.279 50.000 27.61 10.64 38.14 2.17
5094 5799 1.063027 CATCGTCTGCGCATGACATTT 59.937 47.619 27.61 15.42 38.14 2.32
5095 5800 0.654160 CATCGTCTGCGCATGACATT 59.346 50.000 27.61 17.17 38.14 2.71
5096 5801 0.179103 TCATCGTCTGCGCATGACAT 60.179 50.000 27.61 20.17 38.14 3.06
5097 5802 0.179103 ATCATCGTCTGCGCATGACA 60.179 50.000 27.61 19.28 37.42 3.58
5098 5803 0.231534 CATCATCGTCTGCGCATGAC 59.768 55.000 22.27 22.27 37.42 3.06
5099 5804 0.102844 TCATCATCGTCTGCGCATGA 59.897 50.000 12.24 12.46 38.22 3.07
5100 5805 0.932399 TTCATCATCGTCTGCGCATG 59.068 50.000 12.24 5.97 38.14 4.06
5101 5806 0.933097 GTTCATCATCGTCTGCGCAT 59.067 50.000 12.24 0.00 38.14 4.73
5102 5807 0.389687 TGTTCATCATCGTCTGCGCA 60.390 50.000 10.98 10.98 38.14 6.09
5103 5808 0.933097 ATGTTCATCATCGTCTGCGC 59.067 50.000 0.00 0.00 38.14 6.09
5104 5809 2.918656 GATGTTCATCATCGTCTGCG 57.081 50.000 7.78 0.00 42.57 5.18
5111 5816 4.751600 TGCTTGGTATCGATGTTCATCATC 59.248 41.667 8.54 0.00 46.68 2.92
5112 5817 4.512944 GTGCTTGGTATCGATGTTCATCAT 59.487 41.667 8.54 7.81 39.77 2.45
5113 5818 3.871006 GTGCTTGGTATCGATGTTCATCA 59.129 43.478 8.54 0.00 0.00 3.07
5114 5819 3.060272 CGTGCTTGGTATCGATGTTCATC 60.060 47.826 8.54 3.01 0.00 2.92
5115 5820 2.866156 CGTGCTTGGTATCGATGTTCAT 59.134 45.455 8.54 0.00 0.00 2.57
5116 5821 2.267426 CGTGCTTGGTATCGATGTTCA 58.733 47.619 8.54 0.50 0.00 3.18
5117 5822 2.029244 CACGTGCTTGGTATCGATGTTC 59.971 50.000 8.54 0.00 0.00 3.18
5118 5823 1.999735 CACGTGCTTGGTATCGATGTT 59.000 47.619 8.54 0.00 0.00 2.71
5119 5824 1.067142 ACACGTGCTTGGTATCGATGT 60.067 47.619 17.22 0.00 0.00 3.06
5120 5825 1.640428 ACACGTGCTTGGTATCGATG 58.360 50.000 17.22 0.00 0.00 3.84
5121 5826 2.268298 GAACACGTGCTTGGTATCGAT 58.732 47.619 17.22 2.16 0.00 3.59
5122 5827 1.000052 TGAACACGTGCTTGGTATCGA 60.000 47.619 17.22 0.00 0.00 3.59
5123 5828 1.424403 TGAACACGTGCTTGGTATCG 58.576 50.000 17.22 0.00 0.00 2.92
5124 5829 2.411031 CGTTGAACACGTGCTTGGTATC 60.411 50.000 17.22 3.60 44.49 2.24
5125 5830 1.529438 CGTTGAACACGTGCTTGGTAT 59.471 47.619 17.22 0.00 44.49 2.73
5126 5831 0.931702 CGTTGAACACGTGCTTGGTA 59.068 50.000 17.22 0.00 44.49 3.25
5127 5832 1.719117 CGTTGAACACGTGCTTGGT 59.281 52.632 17.22 0.00 44.49 3.67
5128 5833 4.588084 CGTTGAACACGTGCTTGG 57.412 55.556 17.22 0.00 44.49 3.61
5136 5841 5.270083 TCAACATGACATTTCGTTGAACAC 58.730 37.500 14.27 0.00 43.40 3.32
5137 5842 5.491635 TCAACATGACATTTCGTTGAACA 57.508 34.783 14.27 0.00 43.40 3.18
5169 5874 7.493320 CCTAAAAACCAAAGTACAAAGGGAAAC 59.507 37.037 0.00 0.00 0.00 2.78
5170 5875 7.180587 ACCTAAAAACCAAAGTACAAAGGGAAA 59.819 33.333 0.00 0.00 0.00 3.13
5171 5876 6.668718 ACCTAAAAACCAAAGTACAAAGGGAA 59.331 34.615 0.00 0.00 0.00 3.97
5172 5877 6.196434 ACCTAAAAACCAAAGTACAAAGGGA 58.804 36.000 0.00 0.00 0.00 4.20
5173 5878 6.474140 ACCTAAAAACCAAAGTACAAAGGG 57.526 37.500 0.00 0.00 0.00 3.95
5174 5879 7.490079 GTGAACCTAAAAACCAAAGTACAAAGG 59.510 37.037 0.00 0.00 0.00 3.11
5175 5880 8.248253 AGTGAACCTAAAAACCAAAGTACAAAG 58.752 33.333 0.00 0.00 0.00 2.77
5176 5881 8.124808 AGTGAACCTAAAAACCAAAGTACAAA 57.875 30.769 0.00 0.00 0.00 2.83
5177 5882 7.706100 AGTGAACCTAAAAACCAAAGTACAA 57.294 32.000 0.00 0.00 0.00 2.41
5178 5883 8.266473 TCTAGTGAACCTAAAAACCAAAGTACA 58.734 33.333 0.00 0.00 0.00 2.90
5179 5884 8.667076 TCTAGTGAACCTAAAAACCAAAGTAC 57.333 34.615 0.00 0.00 0.00 2.73
5180 5885 9.280174 CATCTAGTGAACCTAAAAACCAAAGTA 57.720 33.333 0.00 0.00 0.00 2.24
5181 5886 7.996644 TCATCTAGTGAACCTAAAAACCAAAGT 59.003 33.333 0.00 0.00 32.78 2.66
5182 5887 8.290325 GTCATCTAGTGAACCTAAAAACCAAAG 58.710 37.037 0.00 0.00 38.90 2.77
5183 5888 7.996644 AGTCATCTAGTGAACCTAAAAACCAAA 59.003 33.333 0.00 0.00 38.90 3.28
5184 5889 7.514721 AGTCATCTAGTGAACCTAAAAACCAA 58.485 34.615 0.00 0.00 38.90 3.67
5185 5890 7.074653 AGTCATCTAGTGAACCTAAAAACCA 57.925 36.000 0.00 0.00 38.90 3.67
5186 5891 6.310711 CGAGTCATCTAGTGAACCTAAAAACC 59.689 42.308 0.00 0.00 38.90 3.27
5187 5892 6.867293 ACGAGTCATCTAGTGAACCTAAAAAC 59.133 38.462 0.00 0.00 38.90 2.43
5188 5893 6.989659 ACGAGTCATCTAGTGAACCTAAAAA 58.010 36.000 0.00 0.00 38.90 1.94
5189 5894 6.585695 ACGAGTCATCTAGTGAACCTAAAA 57.414 37.500 0.00 0.00 38.90 1.52
5190 5895 6.387465 CAACGAGTCATCTAGTGAACCTAAA 58.613 40.000 0.00 0.00 38.90 1.85
5191 5896 5.621555 GCAACGAGTCATCTAGTGAACCTAA 60.622 44.000 0.00 0.00 38.90 2.69
5192 5897 4.142447 GCAACGAGTCATCTAGTGAACCTA 60.142 45.833 0.00 0.00 38.90 3.08
5193 5898 3.367498 GCAACGAGTCATCTAGTGAACCT 60.367 47.826 0.00 0.00 38.90 3.50
5194 5899 2.924290 GCAACGAGTCATCTAGTGAACC 59.076 50.000 0.00 0.00 38.90 3.62
5195 5900 2.594654 CGCAACGAGTCATCTAGTGAAC 59.405 50.000 0.00 0.00 38.90 3.18
5196 5901 2.863739 CGCAACGAGTCATCTAGTGAA 58.136 47.619 0.00 0.00 38.90 3.18
5197 5902 1.467543 GCGCAACGAGTCATCTAGTGA 60.468 52.381 0.30 0.00 30.40 3.41
5198 5903 0.917259 GCGCAACGAGTCATCTAGTG 59.083 55.000 0.30 0.00 30.40 2.74
5199 5904 0.179134 GGCGCAACGAGTCATCTAGT 60.179 55.000 10.83 0.00 0.00 2.57
5200 5905 0.179137 TGGCGCAACGAGTCATCTAG 60.179 55.000 10.83 0.00 0.00 2.43
5201 5906 0.245266 TTGGCGCAACGAGTCATCTA 59.755 50.000 10.83 0.00 0.00 1.98
5202 5907 0.391661 ATTGGCGCAACGAGTCATCT 60.392 50.000 10.83 0.00 0.00 2.90
5203 5908 0.247814 CATTGGCGCAACGAGTCATC 60.248 55.000 10.83 0.00 0.00 2.92
5204 5909 1.647545 CCATTGGCGCAACGAGTCAT 61.648 55.000 10.83 0.00 0.00 3.06
5205 5910 2.324330 CCATTGGCGCAACGAGTCA 61.324 57.895 10.83 0.00 0.00 3.41
5206 5911 2.480555 CCATTGGCGCAACGAGTC 59.519 61.111 10.83 0.00 0.00 3.36
5207 5912 3.737172 GCCATTGGCGCAACGAGT 61.737 61.111 12.82 0.00 39.62 4.18
5224 5929 4.082523 TCCCTCTCGGCCTTTGCG 62.083 66.667 0.00 0.00 38.85 4.85
5225 5930 2.124942 CTCCCTCTCGGCCTTTGC 60.125 66.667 0.00 0.00 0.00 3.68
5226 5931 2.124942 GCTCCCTCTCGGCCTTTG 60.125 66.667 0.00 0.00 0.00 2.77
5227 5932 3.403558 GGCTCCCTCTCGGCCTTT 61.404 66.667 0.00 0.00 42.31 3.11
5228 5933 4.722535 TGGCTCCCTCTCGGCCTT 62.723 66.667 0.00 0.00 45.45 4.35
5229 5934 4.722535 TTGGCTCCCTCTCGGCCT 62.723 66.667 0.00 0.00 45.45 5.19
5230 5935 4.168291 CTTGGCTCCCTCTCGGCC 62.168 72.222 0.00 0.00 45.45 6.13
5231 5936 1.403687 ATACTTGGCTCCCTCTCGGC 61.404 60.000 0.00 0.00 0.00 5.54
5232 5937 1.123928 AATACTTGGCTCCCTCTCGG 58.876 55.000 0.00 0.00 0.00 4.63
5233 5938 1.482593 ACAATACTTGGCTCCCTCTCG 59.517 52.381 0.00 0.00 34.12 4.04
5234 5939 2.501723 TCACAATACTTGGCTCCCTCTC 59.498 50.000 0.00 0.00 34.12 3.20
5235 5940 2.503356 CTCACAATACTTGGCTCCCTCT 59.497 50.000 0.00 0.00 34.12 3.69
5236 5941 2.501723 TCTCACAATACTTGGCTCCCTC 59.498 50.000 0.00 0.00 34.12 4.30
5237 5942 2.551270 TCTCACAATACTTGGCTCCCT 58.449 47.619 0.00 0.00 34.12 4.20
5238 5943 3.350219 TTCTCACAATACTTGGCTCCC 57.650 47.619 0.00 0.00 34.12 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.