Multiple sequence alignment - TraesCS4D01G221100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G221100 chr4D 100.000 5854 0 0 1 5854 378265326 378271179 0.000000e+00 10811.0
1 TraesCS4D01G221100 chr4D 85.816 705 91 6 1 704 87262730 87263426 0.000000e+00 739.0
2 TraesCS4D01G221100 chr4D 96.806 407 12 1 1 406 439873439 439873033 0.000000e+00 678.0
3 TraesCS4D01G221100 chr4A 93.161 3173 145 25 783 3929 87409375 87406249 0.000000e+00 4591.0
4 TraesCS4D01G221100 chr4A 91.511 695 56 3 1 694 59479929 59479237 0.000000e+00 953.0
5 TraesCS4D01G221100 chr4A 91.195 636 32 11 4975 5599 87404930 87404308 0.000000e+00 843.0
6 TraesCS4D01G221100 chr4A 91.423 548 40 4 3926 4468 87406091 87405546 0.000000e+00 745.0
7 TraesCS4D01G221100 chr4A 91.411 489 27 4 4478 4952 87405485 87404998 0.000000e+00 656.0
8 TraesCS4D01G221100 chr4A 95.455 132 3 2 5726 5854 87404284 87404153 2.140000e-49 207.0
9 TraesCS4D01G221100 chr4A 95.192 104 4 1 5601 5704 719769350 719769452 4.690000e-36 163.0
10 TraesCS4D01G221100 chr4B 94.381 2705 121 22 2262 4947 464164892 464167584 0.000000e+00 4124.0
11 TraesCS4D01G221100 chr4B 93.897 1278 54 5 955 2230 464163513 464164768 0.000000e+00 1906.0
12 TraesCS4D01G221100 chr4B 91.477 704 56 3 1 703 412775533 412776233 0.000000e+00 965.0
13 TraesCS4D01G221100 chr4B 90.596 638 34 11 4972 5599 464167653 464168274 0.000000e+00 822.0
14 TraesCS4D01G221100 chr4B 93.213 221 8 5 745 958 464162844 464163064 9.470000e-83 318.0
15 TraesCS4D01G221100 chr4B 91.176 102 6 2 5726 5824 464168298 464168399 1.020000e-27 135.0
16 TraesCS4D01G221100 chr3B 95.577 407 17 1 1 406 816813359 816812953 0.000000e+00 651.0
17 TraesCS4D01G221100 chr3B 90.148 406 39 1 1 405 732865030 732865435 1.440000e-145 527.0
18 TraesCS4D01G221100 chr6D 95.086 407 19 1 1 406 317459321 317458915 1.780000e-179 640.0
19 TraesCS4D01G221100 chr6D 87.589 282 30 5 432 708 455735987 455736268 7.320000e-84 322.0
20 TraesCS4D01G221100 chr6D 89.873 79 2 3 3899 3976 104075894 104075821 4.830000e-16 97.1
21 TraesCS4D01G221100 chr6D 88.608 79 3 3 3899 3976 45521497 45521570 2.250000e-14 91.6
22 TraesCS4D01G221100 chr1A 95.086 407 19 1 1 406 486944768 486945174 1.780000e-179 640.0
23 TraesCS4D01G221100 chr1A 95.192 104 5 0 5600 5703 510277483 510277380 1.310000e-36 165.0
24 TraesCS4D01G221100 chr7A 95.674 393 17 0 1 393 32847901 32848293 2.980000e-177 632.0
25 TraesCS4D01G221100 chr7A 92.490 253 18 1 455 707 32832690 32832941 1.550000e-95 361.0
26 TraesCS4D01G221100 chr7A 93.069 202 13 1 506 707 32848578 32848778 1.600000e-75 294.0
27 TraesCS4D01G221100 chr7A 88.312 77 3 3 3899 3974 47926539 47926610 2.910000e-13 87.9
28 TraesCS4D01G221100 chr1D 82.948 346 49 8 303 644 379729739 379730078 2.650000e-78 303.0
29 TraesCS4D01G221100 chr1D 94.286 105 6 0 5600 5704 13234685 13234581 1.690000e-35 161.0
30 TraesCS4D01G221100 chr7B 96.078 102 4 0 5600 5701 538165827 538165928 3.630000e-37 167.0
31 TraesCS4D01G221100 chr1B 95.238 105 5 0 5600 5704 647588687 647588583 3.630000e-37 167.0
32 TraesCS4D01G221100 chr1B 94.286 105 6 0 5600 5704 11133441 11133337 1.690000e-35 161.0
33 TraesCS4D01G221100 chr7D 94.286 105 6 0 5600 5704 47905591 47905487 1.690000e-35 161.0
34 TraesCS4D01G221100 chr6B 94.286 105 6 0 5600 5704 620698881 620698985 1.690000e-35 161.0
35 TraesCS4D01G221100 chr3D 94.286 105 6 0 5600 5704 508320381 508320485 1.690000e-35 161.0
36 TraesCS4D01G221100 chr5A 90.909 88 7 1 2787 2873 479753715 479753802 3.710000e-22 117.0
37 TraesCS4D01G221100 chrUn 89.873 79 2 3 3899 3976 478644017 478644090 4.830000e-16 97.1
38 TraesCS4D01G221100 chr6A 89.873 79 2 3 3899 3976 52031459 52031386 4.830000e-16 97.1
39 TraesCS4D01G221100 chr2A 89.873 79 2 3 3899 3976 86680343 86680270 4.830000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G221100 chr4D 378265326 378271179 5853 False 10811.0 10811 100.0000 1 5854 1 chr4D.!!$F2 5853
1 TraesCS4D01G221100 chr4D 87262730 87263426 696 False 739.0 739 85.8160 1 704 1 chr4D.!!$F1 703
2 TraesCS4D01G221100 chr4A 87404153 87409375 5222 True 1408.4 4591 92.5290 783 5854 5 chr4A.!!$R2 5071
3 TraesCS4D01G221100 chr4A 59479237 59479929 692 True 953.0 953 91.5110 1 694 1 chr4A.!!$R1 693
4 TraesCS4D01G221100 chr4B 464162844 464168399 5555 False 1461.0 4124 92.6526 745 5824 5 chr4B.!!$F2 5079
5 TraesCS4D01G221100 chr4B 412775533 412776233 700 False 965.0 965 91.4770 1 703 1 chr4B.!!$F1 702
6 TraesCS4D01G221100 chr7A 32847901 32848778 877 False 463.0 632 94.3715 1 707 2 chr7A.!!$F3 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 888 0.033894 AGAAGGAGAGGAGACGGGAC 60.034 60.0 0.00 0.0 0.00 4.46 F
1275 1911 0.178973 GGGGTAACTGGTTGGTTGCT 60.179 55.0 0.00 0.0 33.47 3.91 F
1803 2440 0.391661 CACCCAGAATCCCACTCACG 60.392 60.0 0.00 0.0 0.00 4.35 F
2176 2814 0.400213 GAATGACCACTGGGACACCA 59.600 55.0 0.00 0.0 46.94 4.17 F
3062 3810 0.171231 GGGCAAATTTCGTGGCTCTC 59.829 55.0 2.63 0.0 41.14 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 2332 0.035056 CCCCGAAGATGTTTCCAGCT 60.035 55.000 0.00 0.00 39.50 4.24 R
2670 3415 0.036306 AAAGGTGCCAAGTAGGACCG 59.964 55.000 0.00 0.00 40.46 4.79 R
3053 3801 0.884514 TCAAGACAGAGAGAGCCACG 59.115 55.000 0.00 0.00 0.00 4.94 R
4116 5043 1.891811 TCGAAAAGCATGCCATGGAAA 59.108 42.857 18.40 2.28 0.00 3.13 R
4971 5969 0.033920 AGACTGACGTGCAAGCATGA 59.966 50.000 20.14 0.00 36.80 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.673484 GCACCACCAGCGCACAAT 61.673 61.111 11.47 0.00 0.00 2.71
62 63 2.112928 ACCACCAGCGCACAATCA 59.887 55.556 11.47 0.00 0.00 2.57
219 220 2.328099 CGCAGTGGCAAGAACCTCC 61.328 63.158 0.00 0.00 41.24 4.30
345 346 2.233566 TCCACCTCCATGGCAGCTT 61.234 57.895 6.96 0.00 39.85 3.74
413 414 0.180406 GCGAGCTTATTTGGGGGAGA 59.820 55.000 0.00 0.00 0.00 3.71
435 436 1.818363 GCCGACGAAAATCCCCTCC 60.818 63.158 0.00 0.00 0.00 4.30
474 475 0.896226 GGAGCACCGTTAAGAGGAGT 59.104 55.000 4.08 0.00 0.00 3.85
486 487 4.699522 AGGAGTTTCACCGCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
542 714 3.426117 CTCCCGACGGCATAACGCT 62.426 63.158 8.86 0.00 41.91 5.07
581 753 4.308899 GACATCTAGTCTGTACGGCAAT 57.691 45.455 0.00 0.00 44.09 3.56
707 879 1.133482 GGAGGAGAGGAGAAGGAGAGG 60.133 61.905 0.00 0.00 0.00 3.69
708 880 1.850345 GAGGAGAGGAGAAGGAGAGGA 59.150 57.143 0.00 0.00 0.00 3.71
709 881 1.852965 AGGAGAGGAGAAGGAGAGGAG 59.147 57.143 0.00 0.00 0.00 3.69
710 882 1.850345 GGAGAGGAGAAGGAGAGGAGA 59.150 57.143 0.00 0.00 0.00 3.71
711 883 2.422945 GGAGAGGAGAAGGAGAGGAGAC 60.423 59.091 0.00 0.00 0.00 3.36
712 884 1.211949 AGAGGAGAAGGAGAGGAGACG 59.788 57.143 0.00 0.00 0.00 4.18
713 885 0.257616 AGGAGAAGGAGAGGAGACGG 59.742 60.000 0.00 0.00 0.00 4.79
714 886 0.753848 GGAGAAGGAGAGGAGACGGG 60.754 65.000 0.00 0.00 0.00 5.28
715 887 0.256464 GAGAAGGAGAGGAGACGGGA 59.744 60.000 0.00 0.00 0.00 5.14
716 888 0.033894 AGAAGGAGAGGAGACGGGAC 60.034 60.000 0.00 0.00 0.00 4.46
717 889 0.323542 GAAGGAGAGGAGACGGGACA 60.324 60.000 0.00 0.00 0.00 4.02
718 890 0.336737 AAGGAGAGGAGACGGGACAT 59.663 55.000 0.00 0.00 0.00 3.06
719 891 1.223501 AGGAGAGGAGACGGGACATA 58.776 55.000 0.00 0.00 0.00 2.29
720 892 1.569548 AGGAGAGGAGACGGGACATAA 59.430 52.381 0.00 0.00 0.00 1.90
721 893 2.024273 AGGAGAGGAGACGGGACATAAA 60.024 50.000 0.00 0.00 0.00 1.40
722 894 2.101082 GGAGAGGAGACGGGACATAAAC 59.899 54.545 0.00 0.00 0.00 2.01
723 895 2.101082 GAGAGGAGACGGGACATAAACC 59.899 54.545 0.00 0.00 0.00 3.27
724 896 1.138464 GAGGAGACGGGACATAAACCC 59.862 57.143 0.00 0.00 43.57 4.11
725 897 0.179702 GGAGACGGGACATAAACCCC 59.820 60.000 0.00 0.00 44.09 4.95
726 898 1.201424 GAGACGGGACATAAACCCCT 58.799 55.000 0.00 0.00 44.09 4.79
727 899 2.391678 GAGACGGGACATAAACCCCTA 58.608 52.381 0.00 0.00 44.09 3.53
728 900 2.364647 GAGACGGGACATAAACCCCTAG 59.635 54.545 0.00 0.00 44.09 3.02
729 901 2.023695 AGACGGGACATAAACCCCTAGA 60.024 50.000 0.00 0.00 44.09 2.43
730 902 2.970640 GACGGGACATAAACCCCTAGAT 59.029 50.000 0.00 0.00 44.09 1.98
731 903 4.140853 AGACGGGACATAAACCCCTAGATA 60.141 45.833 0.00 0.00 44.09 1.98
732 904 4.759953 ACGGGACATAAACCCCTAGATAT 58.240 43.478 0.00 0.00 44.09 1.63
733 905 5.160386 ACGGGACATAAACCCCTAGATATT 58.840 41.667 0.00 0.00 44.09 1.28
734 906 5.012768 ACGGGACATAAACCCCTAGATATTG 59.987 44.000 0.00 0.00 44.09 1.90
735 907 5.012768 CGGGACATAAACCCCTAGATATTGT 59.987 44.000 0.00 0.00 44.09 2.71
736 908 6.238648 GGGACATAAACCCCTAGATATTGTG 58.761 44.000 0.00 0.00 41.38 3.33
737 909 6.043938 GGGACATAAACCCCTAGATATTGTGA 59.956 42.308 0.00 0.00 41.38 3.58
738 910 7.257053 GGGACATAAACCCCTAGATATTGTGAT 60.257 40.741 0.00 0.00 41.38 3.06
739 911 8.164070 GGACATAAACCCCTAGATATTGTGATT 58.836 37.037 0.00 0.00 0.00 2.57
740 912 9.574516 GACATAAACCCCTAGATATTGTGATTT 57.425 33.333 0.00 0.00 0.00 2.17
741 913 9.936329 ACATAAACCCCTAGATATTGTGATTTT 57.064 29.630 0.00 0.00 0.00 1.82
748 920 9.971922 CCCCTAGATATTGTGATTTTGATTTTC 57.028 33.333 0.00 0.00 0.00 2.29
759 931 4.465040 TTTTGATTTTCCATTGCAACGC 57.535 36.364 0.00 0.00 0.00 4.84
763 935 2.299993 TTTTCCATTGCAACGCACAA 57.700 40.000 0.00 0.00 38.71 3.33
764 936 1.850377 TTTCCATTGCAACGCACAAG 58.150 45.000 0.00 0.00 38.71 3.16
905 1084 0.474184 CAAACCAGACCACCAGACCT 59.526 55.000 0.00 0.00 0.00 3.85
989 1625 0.547712 CCCCTTCCTCCTCTGTTCCA 60.548 60.000 0.00 0.00 0.00 3.53
1041 1677 1.383799 CACCCCTCTCCAATGGCAA 59.616 57.895 0.00 0.00 0.00 4.52
1210 1846 3.905678 CGCGCCTCCTCGATTCCT 61.906 66.667 0.00 0.00 0.00 3.36
1213 1849 1.517832 CGCCTCCTCGATTCCTGTT 59.482 57.895 0.00 0.00 0.00 3.16
1275 1911 0.178973 GGGGTAACTGGTTGGTTGCT 60.179 55.000 0.00 0.00 33.47 3.91
1369 2005 4.200092 AGAAGAGGGTTTGTGAACTGTTC 58.800 43.478 13.49 13.49 36.03 3.18
1406 2042 3.440173 GTCTTTCTGATGCCATTTTCGGA 59.560 43.478 0.00 0.00 0.00 4.55
1494 2131 1.808945 CAGGTTCACTGTTGCATCTCC 59.191 52.381 0.00 0.00 42.42 3.71
1528 2165 1.625818 GATCTCAGGGGTTGTGACAGT 59.374 52.381 0.00 0.00 32.56 3.55
1547 2184 4.184629 CAGTACCTAGTTCCAATGCTGTC 58.815 47.826 0.00 0.00 0.00 3.51
1667 2304 3.124297 GCTAACTCTGACATGTGTTGCTC 59.876 47.826 1.15 0.00 0.00 4.26
1692 2329 5.468746 CGTAAATTGGAGAACAGAGGTGAAA 59.531 40.000 0.00 0.00 0.00 2.69
1695 2332 1.768275 TGGAGAACAGAGGTGAAAGCA 59.232 47.619 0.00 0.00 36.26 3.91
1704 2341 3.873805 GGTGAAAGCAGCTGGAAAC 57.126 52.632 17.12 0.00 39.38 2.78
1749 2386 5.181748 GTTGCAACTTATGGAGAGTCTCAT 58.818 41.667 22.36 14.47 31.08 2.90
1755 2392 1.422531 ATGGAGAGTCTCATGGAGGC 58.577 55.000 21.53 3.13 34.04 4.70
1803 2440 0.391661 CACCCAGAATCCCACTCACG 60.392 60.000 0.00 0.00 0.00 4.35
1980 2617 0.813610 TTGATTATCACAGGCGGCCG 60.814 55.000 24.05 24.05 0.00 6.13
2031 2668 6.479331 GGAAGGAGACCGATACTTGTAAAATC 59.521 42.308 0.00 0.00 0.00 2.17
2046 2683 7.393515 ACTTGTAAAATCCTTTCAGGGACATAC 59.606 37.037 0.00 0.00 38.30 2.39
2087 2724 2.107204 AGACATGGGATATCCTTGGTGC 59.893 50.000 21.18 12.19 42.97 5.01
2127 2764 6.005583 AGAATGCATTAGTTTGTGTCAGTG 57.994 37.500 12.97 0.00 0.00 3.66
2134 2771 7.012799 TGCATTAGTTTGTGTCAGTGTTATGAA 59.987 33.333 0.00 0.00 0.00 2.57
2138 2775 6.265577 AGTTTGTGTCAGTGTTATGAAAAGC 58.734 36.000 0.00 0.00 0.00 3.51
2139 2776 6.095440 AGTTTGTGTCAGTGTTATGAAAAGCT 59.905 34.615 0.00 0.00 0.00 3.74
2140 2777 5.422666 TGTGTCAGTGTTATGAAAAGCTG 57.577 39.130 0.00 0.00 0.00 4.24
2141 2778 5.122519 TGTGTCAGTGTTATGAAAAGCTGA 58.877 37.500 0.00 0.00 0.00 4.26
2143 2780 6.262944 TGTGTCAGTGTTATGAAAAGCTGAAT 59.737 34.615 0.00 0.00 35.20 2.57
2144 2781 6.580041 GTGTCAGTGTTATGAAAAGCTGAATG 59.420 38.462 0.00 0.00 35.20 2.67
2145 2782 6.486320 TGTCAGTGTTATGAAAAGCTGAATGA 59.514 34.615 0.00 0.00 35.20 2.57
2173 2811 0.692476 CAGGAATGACCACTGGGACA 59.308 55.000 0.00 0.00 42.91 4.02
2176 2814 0.400213 GAATGACCACTGGGACACCA 59.600 55.000 0.00 0.00 46.94 4.17
2228 2866 5.484734 AAGAGGGGGTGTAAGTATCTAGT 57.515 43.478 0.00 0.00 0.00 2.57
2229 2867 6.603110 AAGAGGGGGTGTAAGTATCTAGTA 57.397 41.667 0.00 0.00 0.00 1.82
2230 2868 6.203526 AGAGGGGGTGTAAGTATCTAGTAG 57.796 45.833 0.00 0.00 0.00 2.57
2231 2869 5.675884 AGAGGGGGTGTAAGTATCTAGTAGT 59.324 44.000 0.00 0.00 0.00 2.73
2232 2870 6.853983 AGAGGGGGTGTAAGTATCTAGTAGTA 59.146 42.308 0.00 0.00 0.00 1.82
2233 2871 7.017452 AGAGGGGGTGTAAGTATCTAGTAGTAG 59.983 44.444 0.00 0.00 0.00 2.57
2234 2872 6.623183 AGGGGGTGTAAGTATCTAGTAGTAGT 59.377 42.308 4.51 0.00 0.00 2.73
2235 2873 7.796637 AGGGGGTGTAAGTATCTAGTAGTAGTA 59.203 40.741 4.51 0.00 0.00 1.82
2236 2874 8.610369 GGGGGTGTAAGTATCTAGTAGTAGTAT 58.390 40.741 4.51 0.81 0.00 2.12
2237 2875 9.665719 GGGGTGTAAGTATCTAGTAGTAGTATC 57.334 40.741 4.51 0.00 0.00 2.24
2273 3016 6.925610 TTTAATAACTGCTCATGGTAGCTG 57.074 37.500 10.54 10.54 43.19 4.24
2319 3062 1.269051 GGCACTGACCCTTTTGTTTCG 60.269 52.381 0.00 0.00 0.00 3.46
2403 3146 5.941058 TGCGGATTTAACTTATGACCTCAAA 59.059 36.000 0.00 0.00 0.00 2.69
2421 3164 5.520288 CCTCAAATACGGTGTTAGATCTGTG 59.480 44.000 5.18 0.00 0.00 3.66
2475 3218 5.773176 TGTATAGACCAGTTCTCACACTGAA 59.227 40.000 2.32 0.00 46.29 3.02
2485 3228 5.302059 AGTTCTCACACTGAAGCACTAACTA 59.698 40.000 0.00 0.00 0.00 2.24
2486 3229 5.984695 TCTCACACTGAAGCACTAACTAT 57.015 39.130 0.00 0.00 0.00 2.12
2543 3286 8.617809 GGTGTTTTCTGTACTTGAATAGTTGAA 58.382 33.333 0.00 0.00 38.33 2.69
2660 3405 7.381323 AGAAAATTCTTAAGCTCAAATGTGGG 58.619 34.615 0.00 0.00 32.55 4.61
2670 3415 3.610911 CTCAAATGTGGGGTAGAGGTTC 58.389 50.000 0.00 0.00 0.00 3.62
2686 3431 0.672711 GTTCGGTCCTACTTGGCACC 60.673 60.000 0.00 0.00 34.65 5.01
2688 3433 0.834687 TCGGTCCTACTTGGCACCTT 60.835 55.000 0.00 0.00 35.34 3.50
2721 3467 6.374417 ACTATTCCACATCTGTAACCAAGT 57.626 37.500 0.00 0.00 0.00 3.16
2757 3503 6.324819 CCTGGTTACTGCTTGATAAACAATG 58.675 40.000 0.00 0.00 37.88 2.82
2873 3621 3.244044 TGCAAATAAGCAGTGGTTTTCCC 60.244 43.478 13.62 0.00 40.11 3.97
2874 3622 3.864540 GCAAATAAGCAGTGGTTTTCCCC 60.865 47.826 13.62 0.00 39.73 4.81
2898 3646 3.245948 TGGATGGCCCCTCTTTATTTTGT 60.246 43.478 0.00 0.00 0.00 2.83
2935 3683 8.462016 GTTCTTGCTTGACCTAAATATGACAAT 58.538 33.333 0.00 0.00 0.00 2.71
2936 3684 8.213518 TCTTGCTTGACCTAAATATGACAATC 57.786 34.615 0.00 0.00 0.00 2.67
2960 3708 5.005394 CCAGTTGTTTATGTACTTCGATCCG 59.995 44.000 0.00 0.00 0.00 4.18
3003 3751 3.502595 AGCAATCTGTATCATGCTGATGC 59.497 43.478 8.40 7.73 46.66 3.91
3037 3785 6.924913 TTATTTCACCATTTCATTCCCACA 57.075 33.333 0.00 0.00 0.00 4.17
3053 3801 2.289010 CCCACACAGAAGGGCAAATTTC 60.289 50.000 0.00 0.00 38.44 2.17
3058 3806 0.603065 AGAAGGGCAAATTTCGTGGC 59.397 50.000 0.00 0.00 40.67 5.01
3060 3808 0.603065 AAGGGCAAATTTCGTGGCTC 59.397 50.000 2.63 0.00 41.14 4.70
3062 3810 0.171231 GGGCAAATTTCGTGGCTCTC 59.829 55.000 2.63 0.00 41.14 3.20
3063 3811 1.168714 GGCAAATTTCGTGGCTCTCT 58.831 50.000 0.00 0.00 38.46 3.10
3066 3814 2.159599 GCAAATTTCGTGGCTCTCTCTG 60.160 50.000 0.00 0.00 0.00 3.35
3070 3818 1.621992 TTCGTGGCTCTCTCTGTCTT 58.378 50.000 0.00 0.00 0.00 3.01
3071 3819 0.884514 TCGTGGCTCTCTCTGTCTTG 59.115 55.000 0.00 0.00 0.00 3.02
3301 4052 7.565323 AAATTTCCAGATAGAGAGCAACATC 57.435 36.000 0.00 0.00 0.00 3.06
3425 4185 5.475719 CCAGAAATGTTCCTCGTGTAAGTA 58.524 41.667 0.00 0.00 0.00 2.24
3426 4186 6.106673 CCAGAAATGTTCCTCGTGTAAGTAT 58.893 40.000 0.00 0.00 0.00 2.12
3427 4187 6.594159 CCAGAAATGTTCCTCGTGTAAGTATT 59.406 38.462 0.00 0.00 0.00 1.89
3508 4268 5.006165 CACTCTATTTTGTTCTCGGCTCATC 59.994 44.000 0.00 0.00 0.00 2.92
3608 4368 6.750061 GCTGGTATAATTTATAGGGGCTTGGT 60.750 42.308 0.00 0.00 0.00 3.67
3888 4653 3.070590 GGGCGGTGTACAGGTATTTATCT 59.929 47.826 0.00 0.00 0.00 1.98
3893 4658 5.628193 CGGTGTACAGGTATTTATCTTAGCG 59.372 44.000 0.00 0.00 0.00 4.26
4046 4973 4.079253 CAACAGCAACTATTGGGGTAAGT 58.921 43.478 0.00 0.00 0.00 2.24
4078 5005 5.240403 GTGCAGAGAACTTCCTTTCAGAATT 59.760 40.000 0.00 0.00 0.00 2.17
4079 5006 5.240183 TGCAGAGAACTTCCTTTCAGAATTG 59.760 40.000 0.00 0.00 0.00 2.32
4098 5025 8.060090 CAGAATTGCAAAACAGAGAAAATGTTC 58.940 33.333 1.71 0.00 39.91 3.18
4116 5043 3.936453 TGTTCTTGAAAGTGTAGCAACGT 59.064 39.130 0.00 0.00 0.00 3.99
4149 5076 6.195983 GCATGCTTTTCGAATGATAAGAACTG 59.804 38.462 11.37 5.94 35.81 3.16
4166 5093 9.944376 ATAAGAACTGTGATATTATGCCGTAAT 57.056 29.630 0.00 0.00 36.90 1.89
4172 5099 8.988934 ACTGTGATATTATGCCGTAATAACTTG 58.011 33.333 0.71 0.00 38.42 3.16
4195 5122 6.338146 TGTAACCACTGCTATGTCAAGTATC 58.662 40.000 0.00 0.00 0.00 2.24
4211 5138 5.629079 AAGTATCAAACTTGTTAGCAGCC 57.371 39.130 0.00 0.00 46.90 4.85
4219 5146 5.824904 AACTTGTTAGCAGCCATGAATAG 57.175 39.130 0.00 0.00 0.00 1.73
4225 5152 5.123820 TGTTAGCAGCCATGAATAGTCAAAC 59.876 40.000 0.00 0.00 37.30 2.93
4226 5153 3.019564 AGCAGCCATGAATAGTCAAACC 58.980 45.455 0.00 0.00 37.30 3.27
4255 5183 5.809719 TGGTGCAAAAATTTGGTTTCTTC 57.190 34.783 7.89 0.00 38.57 2.87
4258 5186 4.637977 GTGCAAAAATTTGGTTTCTTCCCA 59.362 37.500 7.89 0.00 38.57 4.37
4269 5197 6.395780 TGGTTTCTTCCCATTGGAGTATAA 57.604 37.500 3.62 0.00 43.07 0.98
4277 5205 3.306780 CCCATTGGAGTATAAGTAGGGCG 60.307 52.174 3.62 0.00 0.00 6.13
4430 5363 1.735926 TGACCCATGTGTTGTCCCTA 58.264 50.000 0.00 0.00 0.00 3.53
4453 5386 6.893020 AGGGGTAATGGATCCATCTAATAC 57.107 41.667 27.45 22.88 35.31 1.89
4635 5619 0.400213 ACAAGAACCAATCGGCTCCA 59.600 50.000 0.00 0.00 34.57 3.86
4678 5670 4.223923 GGCACCAGATCTAGCATAATACCT 59.776 45.833 13.80 0.00 0.00 3.08
4730 5722 3.909732 TCTCCTCCCTCTCTTTCATCTC 58.090 50.000 0.00 0.00 0.00 2.75
4734 5726 3.316501 CTCCCTCTCTTTCATCTCCCAT 58.683 50.000 0.00 0.00 0.00 4.00
4841 5834 8.964420 GATCTGTTGATCACCGAAAATAAAAA 57.036 30.769 0.00 0.00 46.20 1.94
4849 5842 8.191446 TGATCACCGAAAATAAAAAGTTTGTGA 58.809 29.630 0.00 0.00 34.02 3.58
4929 5927 7.907045 CACTTGTTGAAGATACTGATATTGTGC 59.093 37.037 0.00 0.00 32.98 4.57
4934 5932 7.792374 TGAAGATACTGATATTGTGCTTTCC 57.208 36.000 0.00 0.00 0.00 3.13
4939 5937 8.432013 AGATACTGATATTGTGCTTTCCATGTA 58.568 33.333 0.00 0.00 0.00 2.29
4949 5947 3.133183 TGCTTTCCATGTACGCCAGTATA 59.867 43.478 0.00 0.00 35.01 1.47
4952 5950 5.347620 TTTCCATGTACGCCAGTATAGTT 57.652 39.130 0.00 0.00 35.01 2.24
4953 5951 5.347620 TTCCATGTACGCCAGTATAGTTT 57.652 39.130 0.00 0.00 35.01 2.66
4954 5952 4.940463 TCCATGTACGCCAGTATAGTTTC 58.060 43.478 0.00 0.00 35.01 2.78
4955 5953 4.647853 TCCATGTACGCCAGTATAGTTTCT 59.352 41.667 0.00 0.00 35.01 2.52
4956 5954 5.829391 TCCATGTACGCCAGTATAGTTTCTA 59.171 40.000 0.00 0.00 35.01 2.10
4957 5955 6.492429 TCCATGTACGCCAGTATAGTTTCTAT 59.508 38.462 0.00 0.00 35.01 1.98
4958 5956 6.586463 CCATGTACGCCAGTATAGTTTCTATG 59.414 42.308 0.00 0.00 35.01 2.23
4959 5957 6.704289 TGTACGCCAGTATAGTTTCTATGT 57.296 37.500 0.23 0.00 35.01 2.29
4961 5959 4.369182 ACGCCAGTATAGTTTCTATGTGC 58.631 43.478 0.23 0.00 0.00 4.57
4962 5960 3.425525 CGCCAGTATAGTTTCTATGTGCG 59.574 47.826 0.00 0.00 0.00 5.34
4963 5961 4.369182 GCCAGTATAGTTTCTATGTGCGT 58.631 43.478 0.23 0.00 0.00 5.24
4964 5962 4.444720 GCCAGTATAGTTTCTATGTGCGTC 59.555 45.833 0.23 0.00 0.00 5.19
4965 5963 5.588240 CCAGTATAGTTTCTATGTGCGTCA 58.412 41.667 0.23 0.00 0.00 4.35
4966 5964 5.687730 CCAGTATAGTTTCTATGTGCGTCAG 59.312 44.000 0.23 0.00 0.00 3.51
4967 5965 6.459710 CCAGTATAGTTTCTATGTGCGTCAGA 60.460 42.308 0.23 0.00 0.00 3.27
4968 5966 7.142021 CAGTATAGTTTCTATGTGCGTCAGAT 58.858 38.462 0.23 0.00 0.00 2.90
4970 5968 9.015367 AGTATAGTTTCTATGTGCGTCAGATAT 57.985 33.333 0.23 0.00 0.00 1.63
4971 5969 9.627395 GTATAGTTTCTATGTGCGTCAGATATT 57.373 33.333 0.23 0.00 0.00 1.28
4972 5970 8.749841 ATAGTTTCTATGTGCGTCAGATATTC 57.250 34.615 0.00 0.00 0.00 1.75
4973 5971 6.573434 AGTTTCTATGTGCGTCAGATATTCA 58.427 36.000 0.00 0.00 0.00 2.57
5003 6051 1.079543 CAGTCTCTGTTCCCTGGCG 60.080 63.158 0.00 0.00 0.00 5.69
5004 6052 1.228894 AGTCTCTGTTCCCTGGCGA 60.229 57.895 0.00 0.00 0.00 5.54
5005 6053 0.832135 AGTCTCTGTTCCCTGGCGAA 60.832 55.000 0.00 0.00 0.00 4.70
5006 6054 0.034896 GTCTCTGTTCCCTGGCGAAA 59.965 55.000 0.00 0.00 0.00 3.46
5007 6055 0.984230 TCTCTGTTCCCTGGCGAAAT 59.016 50.000 0.00 0.00 0.00 2.17
5008 6056 1.351017 TCTCTGTTCCCTGGCGAAATT 59.649 47.619 0.00 0.00 0.00 1.82
5009 6057 1.470098 CTCTGTTCCCTGGCGAAATTG 59.530 52.381 0.00 0.00 0.00 2.32
5010 6058 1.202879 TCTGTTCCCTGGCGAAATTGT 60.203 47.619 0.00 0.00 0.00 2.71
5011 6059 1.613437 CTGTTCCCTGGCGAAATTGTT 59.387 47.619 0.00 0.00 0.00 2.83
5012 6060 1.339610 TGTTCCCTGGCGAAATTGTTG 59.660 47.619 0.00 0.00 0.00 3.33
5013 6061 1.339929 GTTCCCTGGCGAAATTGTTGT 59.660 47.619 0.00 0.00 0.00 3.32
5014 6062 1.243902 TCCCTGGCGAAATTGTTGTC 58.756 50.000 0.00 0.00 0.00 3.18
5017 6065 1.068333 CCTGGCGAAATTGTTGTCTGG 60.068 52.381 0.00 0.00 0.00 3.86
5021 6069 1.195900 GCGAAATTGTTGTCTGGCGTA 59.804 47.619 0.00 0.00 0.00 4.42
5022 6070 2.350007 GCGAAATTGTTGTCTGGCGTAA 60.350 45.455 0.00 0.00 0.00 3.18
5047 6101 8.619146 AAATTGAAATGCGATGTGTGTTATAG 57.381 30.769 0.00 0.00 0.00 1.31
5051 6105 9.535878 TTGAAATGCGATGTGTGTTATAGTATA 57.464 29.630 0.00 0.00 0.00 1.47
5052 6106 8.974408 TGAAATGCGATGTGTGTTATAGTATAC 58.026 33.333 0.00 0.00 0.00 1.47
5053 6107 9.193133 GAAATGCGATGTGTGTTATAGTATACT 57.807 33.333 10.87 10.87 0.00 2.12
5054 6108 8.744008 AATGCGATGTGTGTTATAGTATACTC 57.256 34.615 9.12 0.00 0.00 2.59
5056 6110 7.360361 TGCGATGTGTGTTATAGTATACTCTG 58.640 38.462 9.12 0.00 0.00 3.35
5076 6133 5.410924 TCTGTGTATGTATGCACTGAGAAC 58.589 41.667 15.02 0.00 42.78 3.01
5085 6142 5.756833 TGTATGCACTGAGAACATGATCATC 59.243 40.000 4.86 0.00 0.00 2.92
5164 6221 2.297315 TCTATATTGTCCTGCCTGCTCG 59.703 50.000 0.00 0.00 0.00 5.03
5242 6299 3.569250 TCTCCAAACGCCTTAATTTGC 57.431 42.857 0.00 0.00 34.99 3.68
5275 6333 8.384607 TGTGTATAATGTGTTTTCTAAGCACA 57.615 30.769 10.70 10.70 45.48 4.57
5316 6374 0.960861 GTGCTAGGAAAGGGGTGTGC 60.961 60.000 0.00 0.00 0.00 4.57
5324 6382 2.031870 GAAAGGGGTGTGCTGAGTTTT 58.968 47.619 0.00 0.00 0.00 2.43
5329 6387 1.270550 GGGTGTGCTGAGTTTTCATGG 59.729 52.381 0.00 0.00 31.68 3.66
5502 6562 6.648725 ACTCAACAATGTTCTCTATTACGC 57.351 37.500 0.00 0.00 0.00 4.42
5503 6563 6.163476 ACTCAACAATGTTCTCTATTACGCA 58.837 36.000 0.00 0.00 0.00 5.24
5504 6564 6.090898 ACTCAACAATGTTCTCTATTACGCAC 59.909 38.462 0.00 0.00 0.00 5.34
5505 6565 6.163476 TCAACAATGTTCTCTATTACGCACT 58.837 36.000 0.00 0.00 0.00 4.40
5506 6566 7.317390 TCAACAATGTTCTCTATTACGCACTA 58.683 34.615 0.00 0.00 0.00 2.74
5507 6567 7.274904 TCAACAATGTTCTCTATTACGCACTAC 59.725 37.037 0.00 0.00 0.00 2.73
5508 6568 6.864342 ACAATGTTCTCTATTACGCACTACT 58.136 36.000 0.00 0.00 0.00 2.57
5509 6569 7.993101 ACAATGTTCTCTATTACGCACTACTA 58.007 34.615 0.00 0.00 0.00 1.82
5510 6570 7.914346 ACAATGTTCTCTATTACGCACTACTAC 59.086 37.037 0.00 0.00 0.00 2.73
5511 6571 6.990341 TGTTCTCTATTACGCACTACTACA 57.010 37.500 0.00 0.00 0.00 2.74
5512 6572 7.012959 TGTTCTCTATTACGCACTACTACAG 57.987 40.000 0.00 0.00 0.00 2.74
5513 6573 6.596888 TGTTCTCTATTACGCACTACTACAGT 59.403 38.462 0.00 0.00 38.32 3.55
5538 6598 2.953284 TTATTTGGGTTGGTGGTCGA 57.047 45.000 0.00 0.00 0.00 4.20
5539 6599 2.188062 TATTTGGGTTGGTGGTCGAC 57.812 50.000 7.13 7.13 0.00 4.20
5583 6643 5.919272 ACCTAAAAGCAAGTAAAGACGTC 57.081 39.130 7.70 7.70 0.00 4.34
5599 6659 0.782384 CGTCGACCAAGTACACAAGC 59.218 55.000 10.58 0.00 0.00 4.01
5600 6660 1.860676 GTCGACCAAGTACACAAGCA 58.139 50.000 3.51 0.00 0.00 3.91
5601 6661 2.206750 GTCGACCAAGTACACAAGCAA 58.793 47.619 3.51 0.00 0.00 3.91
5602 6662 2.221055 GTCGACCAAGTACACAAGCAAG 59.779 50.000 3.51 0.00 0.00 4.01
5603 6663 1.069906 CGACCAAGTACACAAGCAAGC 60.070 52.381 0.00 0.00 0.00 4.01
5605 6665 2.222027 ACCAAGTACACAAGCAAGCTC 58.778 47.619 0.00 0.00 0.00 4.09
5606 6666 2.221169 CCAAGTACACAAGCAAGCTCA 58.779 47.619 0.00 0.00 0.00 4.26
5607 6667 2.225019 CCAAGTACACAAGCAAGCTCAG 59.775 50.000 0.00 0.00 0.00 3.35
5608 6668 3.133691 CAAGTACACAAGCAAGCTCAGA 58.866 45.455 0.00 0.00 0.00 3.27
5609 6669 3.037431 AGTACACAAGCAAGCTCAGAG 57.963 47.619 0.00 0.00 0.00 3.35
5610 6670 2.630098 AGTACACAAGCAAGCTCAGAGA 59.370 45.455 0.00 0.00 0.00 3.10
5611 6671 2.855209 ACACAAGCAAGCTCAGAGAT 57.145 45.000 0.00 0.00 0.00 2.75
5612 6672 2.424557 ACACAAGCAAGCTCAGAGATG 58.575 47.619 0.00 0.18 0.00 2.90
5613 6673 2.224475 ACACAAGCAAGCTCAGAGATGT 60.224 45.455 0.00 0.00 0.00 3.06
5614 6674 2.812591 CACAAGCAAGCTCAGAGATGTT 59.187 45.455 0.00 0.00 0.00 2.71
5615 6675 3.072944 ACAAGCAAGCTCAGAGATGTTC 58.927 45.455 0.00 0.00 0.00 3.18
5616 6676 3.244491 ACAAGCAAGCTCAGAGATGTTCT 60.244 43.478 0.00 0.00 36.25 3.01
5617 6677 4.020751 ACAAGCAAGCTCAGAGATGTTCTA 60.021 41.667 0.00 0.00 33.83 2.10
5618 6678 4.122143 AGCAAGCTCAGAGATGTTCTAC 57.878 45.455 0.00 0.00 33.83 2.59
5619 6679 3.768757 AGCAAGCTCAGAGATGTTCTACT 59.231 43.478 0.00 0.00 33.83 2.57
5620 6680 4.952957 AGCAAGCTCAGAGATGTTCTACTA 59.047 41.667 0.00 0.00 33.83 1.82
5621 6681 5.598005 AGCAAGCTCAGAGATGTTCTACTAT 59.402 40.000 0.00 0.00 33.83 2.12
5622 6682 5.920273 GCAAGCTCAGAGATGTTCTACTATC 59.080 44.000 0.00 0.00 33.83 2.08
5623 6683 6.239008 GCAAGCTCAGAGATGTTCTACTATCT 60.239 42.308 0.00 0.00 36.41 1.98
5624 6684 7.684187 GCAAGCTCAGAGATGTTCTACTATCTT 60.684 40.741 0.00 0.00 33.97 2.40
5625 6685 7.896383 AGCTCAGAGATGTTCTACTATCTTT 57.104 36.000 0.00 0.00 33.97 2.52
5626 6686 8.305046 AGCTCAGAGATGTTCTACTATCTTTT 57.695 34.615 0.00 0.00 33.97 2.27
5627 6687 8.413229 AGCTCAGAGATGTTCTACTATCTTTTC 58.587 37.037 0.00 0.00 33.97 2.29
5628 6688 8.194104 GCTCAGAGATGTTCTACTATCTTTTCA 58.806 37.037 0.00 0.00 33.97 2.69
5629 6689 9.734620 CTCAGAGATGTTCTACTATCTTTTCAG 57.265 37.037 0.00 0.00 33.97 3.02
5630 6690 9.249053 TCAGAGATGTTCTACTATCTTTTCAGT 57.751 33.333 0.00 0.00 33.97 3.41
5631 6691 9.868277 CAGAGATGTTCTACTATCTTTTCAGTT 57.132 33.333 0.00 0.00 33.97 3.16
5637 6697 9.607988 TGTTCTACTATCTTTTCAGTTTTGTCA 57.392 29.630 0.00 0.00 0.00 3.58
5640 6700 9.778741 TCTACTATCTTTTCAGTTTTGTCATGT 57.221 29.630 0.00 0.00 0.00 3.21
5642 6702 7.576236 ACTATCTTTTCAGTTTTGTCATGTCG 58.424 34.615 0.00 0.00 0.00 4.35
5643 6703 5.168526 TCTTTTCAGTTTTGTCATGTCGG 57.831 39.130 0.00 0.00 0.00 4.79
5644 6704 4.638421 TCTTTTCAGTTTTGTCATGTCGGT 59.362 37.500 0.00 0.00 0.00 4.69
5645 6705 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
5646 6706 2.489971 TCAGTTTTGTCATGTCGGTCC 58.510 47.619 0.00 0.00 0.00 4.46
5647 6707 2.104111 TCAGTTTTGTCATGTCGGTCCT 59.896 45.455 0.00 0.00 0.00 3.85
5648 6708 2.878406 CAGTTTTGTCATGTCGGTCCTT 59.122 45.455 0.00 0.00 0.00 3.36
5649 6709 4.062293 CAGTTTTGTCATGTCGGTCCTTA 58.938 43.478 0.00 0.00 0.00 2.69
5650 6710 4.062991 AGTTTTGTCATGTCGGTCCTTAC 58.937 43.478 0.00 0.00 0.00 2.34
5651 6711 3.755112 TTTGTCATGTCGGTCCTTACA 57.245 42.857 0.00 0.00 0.00 2.41
5652 6712 3.973206 TTGTCATGTCGGTCCTTACAT 57.027 42.857 0.00 1.78 36.78 2.29
5658 6718 3.313012 TGTCGGTCCTTACATGACTTG 57.687 47.619 0.00 0.00 35.01 3.16
5659 6719 2.631062 TGTCGGTCCTTACATGACTTGT 59.369 45.455 0.00 0.00 42.62 3.16
5660 6720 3.827876 TGTCGGTCCTTACATGACTTGTA 59.172 43.478 0.00 0.00 39.87 2.41
5661 6721 4.464951 TGTCGGTCCTTACATGACTTGTAT 59.535 41.667 0.00 0.00 40.46 2.29
5662 6722 5.046878 TGTCGGTCCTTACATGACTTGTATT 60.047 40.000 0.00 0.00 40.46 1.89
5663 6723 5.873164 GTCGGTCCTTACATGACTTGTATTT 59.127 40.000 0.00 0.00 40.46 1.40
5664 6724 6.370718 GTCGGTCCTTACATGACTTGTATTTT 59.629 38.462 0.00 0.00 40.46 1.82
5665 6725 6.370442 TCGGTCCTTACATGACTTGTATTTTG 59.630 38.462 0.00 0.00 40.46 2.44
5666 6726 6.322491 GGTCCTTACATGACTTGTATTTTGC 58.678 40.000 0.00 0.00 40.46 3.68
5667 6727 6.151144 GGTCCTTACATGACTTGTATTTTGCT 59.849 38.462 0.00 0.00 40.46 3.91
5668 6728 7.244192 GTCCTTACATGACTTGTATTTTGCTC 58.756 38.462 0.00 0.00 40.46 4.26
5669 6729 7.119846 GTCCTTACATGACTTGTATTTTGCTCT 59.880 37.037 0.00 0.00 40.46 4.09
5670 6730 7.665559 TCCTTACATGACTTGTATTTTGCTCTT 59.334 33.333 0.00 0.00 40.46 2.85
5671 6731 8.299570 CCTTACATGACTTGTATTTTGCTCTTT 58.700 33.333 0.00 0.00 40.46 2.52
5701 6761 5.734855 AAATGAGACACGTATTACCATGC 57.265 39.130 0.00 0.00 0.00 4.06
5702 6762 3.878160 TGAGACACGTATTACCATGCA 57.122 42.857 0.00 0.00 0.00 3.96
5703 6763 4.195225 TGAGACACGTATTACCATGCAA 57.805 40.909 0.00 0.00 0.00 4.08
5707 6767 2.290387 ACACGTATTACCATGCAACCCA 60.290 45.455 0.00 0.00 0.00 4.51
5719 6779 0.319813 GCAACCCAGCGCAAAAGAAT 60.320 50.000 11.47 0.00 0.00 2.40
5726 6786 5.433526 ACCCAGCGCAAAAGAATTATACTA 58.566 37.500 11.47 0.00 0.00 1.82
5727 6787 6.062095 ACCCAGCGCAAAAGAATTATACTAT 58.938 36.000 11.47 0.00 0.00 2.12
5728 6788 7.221450 ACCCAGCGCAAAAGAATTATACTATA 58.779 34.615 11.47 0.00 0.00 1.31
5729 6789 7.172703 ACCCAGCGCAAAAGAATTATACTATAC 59.827 37.037 11.47 0.00 0.00 1.47
5730 6790 7.387948 CCCAGCGCAAAAGAATTATACTATACT 59.612 37.037 11.47 0.00 0.00 2.12
5731 6791 8.436200 CCAGCGCAAAAGAATTATACTATACTC 58.564 37.037 11.47 0.00 0.00 2.59
5732 6792 8.978539 CAGCGCAAAAGAATTATACTATACTCA 58.021 33.333 11.47 0.00 0.00 3.41
5774 6834 5.231991 GCTTTTTATGCGTGGTATGGAATTG 59.768 40.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.765856 GGTACTTCAACTGTCTACCTCTGA 59.234 45.833 0.00 0.00 0.00 3.27
62 63 4.737578 TGGTACTTCAACTGTCTACCTCT 58.262 43.478 0.00 0.00 0.00 3.69
210 211 3.683802 CAAAGAGCATCAGGAGGTTCTT 58.316 45.455 7.14 7.14 42.77 2.52
345 346 2.639839 CCTTCTTCCCCACTTCTTCTCA 59.360 50.000 0.00 0.00 0.00 3.27
393 394 0.107214 CTCCCCCAAATAAGCTCGCA 60.107 55.000 0.00 0.00 0.00 5.10
413 414 1.579964 GGGGATTTTCGTCGGCGTTT 61.580 55.000 10.18 0.00 39.49 3.60
542 714 6.017192 AGATGTCAGGTTGTCTTTAGGACTA 58.983 40.000 0.00 0.00 44.74 2.59
576 748 1.387539 GGAGAAGAGCTTGGATTGCC 58.612 55.000 0.00 0.00 0.00 4.52
581 753 2.660064 GCGGGGAGAAGAGCTTGGA 61.660 63.158 0.00 0.00 0.00 3.53
674 846 0.998945 CTCCTCCTCCTCCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
707 879 3.774616 GGGGTTTATGTCCCGTCTC 57.225 57.895 0.00 0.00 45.46 3.36
712 884 6.043938 TCACAATATCTAGGGGTTTATGTCCC 59.956 42.308 0.00 0.00 43.90 4.46
713 885 7.074653 TCACAATATCTAGGGGTTTATGTCC 57.925 40.000 0.00 0.00 0.00 4.02
714 886 9.574516 AAATCACAATATCTAGGGGTTTATGTC 57.425 33.333 0.00 0.00 0.00 3.06
715 887 9.936329 AAAATCACAATATCTAGGGGTTTATGT 57.064 29.630 0.00 0.00 0.00 2.29
719 891 9.492730 AATCAAAATCACAATATCTAGGGGTTT 57.507 29.630 0.00 0.00 0.00 3.27
720 892 9.492730 AAATCAAAATCACAATATCTAGGGGTT 57.507 29.630 0.00 0.00 0.00 4.11
721 893 9.492730 AAAATCAAAATCACAATATCTAGGGGT 57.507 29.630 0.00 0.00 0.00 4.95
722 894 9.971922 GAAAATCAAAATCACAATATCTAGGGG 57.028 33.333 0.00 0.00 0.00 4.79
723 895 9.971922 GGAAAATCAAAATCACAATATCTAGGG 57.028 33.333 0.00 0.00 0.00 3.53
728 900 9.925268 GCAATGGAAAATCAAAATCACAATATC 57.075 29.630 0.00 0.00 0.00 1.63
729 901 9.451002 TGCAATGGAAAATCAAAATCACAATAT 57.549 25.926 0.00 0.00 0.00 1.28
730 902 8.843885 TGCAATGGAAAATCAAAATCACAATA 57.156 26.923 0.00 0.00 0.00 1.90
731 903 7.747155 TGCAATGGAAAATCAAAATCACAAT 57.253 28.000 0.00 0.00 0.00 2.71
732 904 7.416022 GTTGCAATGGAAAATCAAAATCACAA 58.584 30.769 0.59 0.00 0.00 3.33
733 905 6.292757 CGTTGCAATGGAAAATCAAAATCACA 60.293 34.615 11.00 0.00 0.00 3.58
734 906 6.072733 CGTTGCAATGGAAAATCAAAATCAC 58.927 36.000 11.00 0.00 0.00 3.06
735 907 5.333952 GCGTTGCAATGGAAAATCAAAATCA 60.334 36.000 19.93 0.00 0.00 2.57
736 908 5.081394 GCGTTGCAATGGAAAATCAAAATC 58.919 37.500 19.93 0.00 0.00 2.17
737 909 4.514441 TGCGTTGCAATGGAAAATCAAAAT 59.486 33.333 19.93 0.00 34.76 1.82
738 910 3.873361 TGCGTTGCAATGGAAAATCAAAA 59.127 34.783 19.93 0.00 34.76 2.44
739 911 3.247173 GTGCGTTGCAATGGAAAATCAAA 59.753 39.130 19.93 0.00 41.47 2.69
740 912 2.799412 GTGCGTTGCAATGGAAAATCAA 59.201 40.909 19.93 0.00 41.47 2.57
741 913 2.223900 TGTGCGTTGCAATGGAAAATCA 60.224 40.909 19.93 8.73 41.47 2.57
742 914 2.402305 TGTGCGTTGCAATGGAAAATC 58.598 42.857 19.93 6.20 41.47 2.17
743 915 2.522836 TGTGCGTTGCAATGGAAAAT 57.477 40.000 19.93 0.00 41.47 1.82
748 920 0.668096 ATGCTTGTGCGTTGCAATGG 60.668 50.000 19.93 8.34 41.47 3.16
792 969 2.605818 TGACTCGCTAAACACAACACAC 59.394 45.455 0.00 0.00 0.00 3.82
989 1625 0.256464 TTGGTTTCGGTTGGTGAGGT 59.744 50.000 0.00 0.00 0.00 3.85
1210 1846 0.505231 CGAAGCGCGTTCTAACAACA 59.495 50.000 8.43 0.00 32.33 3.33
1275 1911 2.943033 GCAATCCTAAGCTCGCCTTAAA 59.057 45.455 0.00 0.00 35.68 1.52
1369 2005 4.387256 CAGAAAGACGGCTTTTCTCTACAG 59.613 45.833 19.25 0.00 44.10 2.74
1406 2042 1.485032 GCGATCGCGGAAATACGGTT 61.485 55.000 26.12 0.00 38.16 4.44
1494 2131 4.157289 CCCTGAGATCTCAAAACACCAATG 59.843 45.833 25.09 10.06 39.39 2.82
1528 2165 2.829720 ACGACAGCATTGGAACTAGGTA 59.170 45.455 0.00 0.00 0.00 3.08
1571 2208 7.510685 AGGGCATCTCAGAGTTTACATAGAATA 59.489 37.037 0.00 0.00 0.00 1.75
1572 2209 6.328672 AGGGCATCTCAGAGTTTACATAGAAT 59.671 38.462 0.00 0.00 0.00 2.40
1667 2304 3.684788 CACCTCTGTTCTCCAATTTACGG 59.315 47.826 0.00 0.00 0.00 4.02
1692 2329 1.446907 CGAAGATGTTTCCAGCTGCT 58.553 50.000 8.66 0.00 37.40 4.24
1695 2332 0.035056 CCCCGAAGATGTTTCCAGCT 60.035 55.000 0.00 0.00 39.50 4.24
1704 2341 2.892784 GGAAGTAGTCCCCGAAGATG 57.107 55.000 0.00 0.00 41.10 2.90
1749 2386 4.641645 CAGCCAACACCGCCTCCA 62.642 66.667 0.00 0.00 0.00 3.86
1755 2392 1.295357 TGATAACGCAGCCAACACCG 61.295 55.000 0.00 0.00 0.00 4.94
1803 2440 1.556911 TCTCCTTGCATGTCTTCCTCC 59.443 52.381 0.00 0.00 0.00 4.30
1980 2617 3.010420 GGTTGTTATTCTGCTCTGACCC 58.990 50.000 0.00 0.00 0.00 4.46
2046 2683 4.868734 GTCTTGAAATGTACCCTACCTTCG 59.131 45.833 0.00 0.00 0.00 3.79
2134 2771 5.011329 TCCTGCAGAAAATTCATTCAGCTTT 59.989 36.000 17.39 0.00 41.02 3.51
2138 2775 6.530534 GTCATTCCTGCAGAAAATTCATTCAG 59.469 38.462 17.39 1.64 38.21 3.02
2139 2776 6.392354 GTCATTCCTGCAGAAAATTCATTCA 58.608 36.000 17.39 0.00 38.21 2.57
2140 2777 5.809051 GGTCATTCCTGCAGAAAATTCATTC 59.191 40.000 17.39 3.47 38.21 2.67
2141 2778 5.246656 TGGTCATTCCTGCAGAAAATTCATT 59.753 36.000 17.39 0.00 38.21 2.57
2143 2780 4.022068 GTGGTCATTCCTGCAGAAAATTCA 60.022 41.667 17.39 9.47 38.21 2.57
2144 2781 4.219288 AGTGGTCATTCCTGCAGAAAATTC 59.781 41.667 17.39 9.51 38.21 2.17
2145 2782 4.021719 CAGTGGTCATTCCTGCAGAAAATT 60.022 41.667 17.39 0.00 38.21 1.82
2173 2811 3.843422 TGGGACAAGAACATGAATTGGT 58.157 40.909 0.00 0.00 31.92 3.67
2176 2814 5.735922 CGTGTTTGGGACAAGAACATGAATT 60.736 40.000 0.00 0.00 44.35 2.17
2260 2898 2.338577 AATGTCCAGCTACCATGAGC 57.661 50.000 0.00 0.00 43.19 4.26
2273 3016 5.118286 CAATTATTGCCCTTCCAAATGTCC 58.882 41.667 0.00 0.00 0.00 4.02
2319 3062 4.402155 TCCTGTGGAACCAAATATGATTGC 59.598 41.667 0.00 0.00 34.36 3.56
2403 3146 3.181475 CCTGCACAGATCTAACACCGTAT 60.181 47.826 0.00 0.00 0.00 3.06
2449 3192 6.437477 TCAGTGTGAGAACTGGTCTATACATT 59.563 38.462 13.32 8.16 46.27 2.71
2450 3193 5.952347 TCAGTGTGAGAACTGGTCTATACAT 59.048 40.000 13.32 3.49 46.27 2.29
2459 3202 1.869767 GTGCTTCAGTGTGAGAACTGG 59.130 52.381 4.63 0.00 46.27 4.00
2465 3208 5.163913 GCAATAGTTAGTGCTTCAGTGTGAG 60.164 44.000 4.48 0.00 43.28 3.51
2475 3218 5.006386 AGAAAAGCTGCAATAGTTAGTGCT 58.994 37.500 12.10 0.00 46.39 4.40
2502 3245 5.654650 AGAAAACACCCACATGTAAAGTTGA 59.345 36.000 0.00 0.00 30.75 3.18
2560 3303 2.844348 CCACCTCCCTATTACAGTTGGT 59.156 50.000 0.00 0.00 0.00 3.67
2561 3304 3.112263 TCCACCTCCCTATTACAGTTGG 58.888 50.000 0.00 0.00 0.00 3.77
2562 3305 4.384208 CCTTCCACCTCCCTATTACAGTTG 60.384 50.000 0.00 0.00 0.00 3.16
2660 3405 2.426381 CAAGTAGGACCGAACCTCTACC 59.574 54.545 3.77 0.00 41.00 3.18
2670 3415 0.036306 AAAGGTGCCAAGTAGGACCG 59.964 55.000 0.00 0.00 40.46 4.79
2721 3467 1.975680 GTAACCAGGGGAGTGACAAGA 59.024 52.381 0.00 0.00 0.00 3.02
2757 3503 3.181476 TGCAAGTTTTCTTTCTTCAGGCC 60.181 43.478 0.00 0.00 38.17 5.19
2843 3591 6.991938 ACCACTGCTTATTTGCAAAATCTAA 58.008 32.000 17.19 9.53 42.83 2.10
2873 3621 0.926293 TAAAGAGGGGCCATCCAAGG 59.074 55.000 15.72 0.00 37.22 3.61
2874 3622 3.319031 AATAAAGAGGGGCCATCCAAG 57.681 47.619 15.72 0.00 37.22 3.61
2898 3646 7.781056 AGGTCAAGCAAGAACTGAAATAAAAA 58.219 30.769 0.00 0.00 33.41 1.94
2935 3683 6.103997 GGATCGAAGTACATAAACAACTGGA 58.896 40.000 0.00 0.00 0.00 3.86
2936 3684 5.005394 CGGATCGAAGTACATAAACAACTGG 59.995 44.000 0.00 0.00 0.00 4.00
2944 3692 5.571784 ACAAGACGGATCGAAGTACATAA 57.428 39.130 0.00 0.00 0.00 1.90
2960 3708 6.517914 GCTCTATGCAACAGTATACAAGAC 57.482 41.667 5.50 0.00 42.31 3.01
2994 3742 7.444629 AATAAATCAGTATTCGCATCAGCAT 57.555 32.000 0.00 0.00 42.27 3.79
3000 3748 7.566760 TGGTGAAATAAATCAGTATTCGCAT 57.433 32.000 0.00 0.00 0.00 4.73
3001 3749 6.993786 TGGTGAAATAAATCAGTATTCGCA 57.006 33.333 0.00 0.00 0.00 5.10
3037 3785 1.613437 CCACGAAATTTGCCCTTCTGT 59.387 47.619 0.00 0.00 0.00 3.41
3053 3801 0.884514 TCAAGACAGAGAGAGCCACG 59.115 55.000 0.00 0.00 0.00 4.94
3276 4027 7.833183 AGATGTTGCTCTCTATCTGGAAATTTT 59.167 33.333 0.00 0.00 0.00 1.82
3277 4028 7.282675 CAGATGTTGCTCTCTATCTGGAAATTT 59.717 37.037 0.00 0.00 41.61 1.82
3301 4052 5.804944 ATTCTGGATCAGGACATCTACAG 57.195 43.478 0.00 0.00 31.51 2.74
3608 4368 7.468631 GCTTCAAGTTTGTCAAATACAGGAGAA 60.469 37.037 0.40 0.22 39.87 2.87
3893 4658 7.083875 TGAACATTGTAATAGTAAAGCAGGC 57.916 36.000 0.00 0.00 0.00 4.85
4046 4973 3.557898 GGAAGTTCTCTGCACTGGAATGA 60.558 47.826 2.25 0.00 0.00 2.57
4078 5005 6.629128 TCAAGAACATTTTCTCTGTTTTGCA 58.371 32.000 0.00 0.00 41.56 4.08
4079 5006 7.524294 TTCAAGAACATTTTCTCTGTTTTGC 57.476 32.000 0.00 0.00 41.56 3.68
4098 5025 4.201871 TGGAAACGTTGCTACACTTTCAAG 60.202 41.667 6.17 0.00 0.00 3.02
4116 5043 1.891811 TCGAAAAGCATGCCATGGAAA 59.108 42.857 18.40 2.28 0.00 3.13
4166 5093 6.104146 TGACATAGCAGTGGTTACAAGTTA 57.896 37.500 0.00 0.00 0.00 2.24
4172 5099 6.338146 TGATACTTGACATAGCAGTGGTTAC 58.662 40.000 0.00 0.00 0.00 2.50
4195 5122 3.921119 TCATGGCTGCTAACAAGTTTG 57.079 42.857 0.00 0.00 0.00 2.93
4211 5138 9.357652 CACCAAATAAAGGTTTGACTATTCATG 57.642 33.333 1.24 0.00 40.64 3.07
4219 5146 6.670077 TTTTGCACCAAATAAAGGTTTGAC 57.330 33.333 0.00 0.00 40.64 3.18
4225 5152 7.036996 ACCAAATTTTTGCACCAAATAAAGG 57.963 32.000 3.92 8.16 36.86 3.11
4226 5153 8.923609 AAACCAAATTTTTGCACCAAATAAAG 57.076 26.923 3.92 0.10 36.86 1.85
4255 5183 3.306780 CGCCCTACTTATACTCCAATGGG 60.307 52.174 0.00 0.00 35.47 4.00
4258 5186 4.220724 TGTCGCCCTACTTATACTCCAAT 58.779 43.478 0.00 0.00 0.00 3.16
4430 5363 6.584950 AGTATTAGATGGATCCATTACCCCT 58.415 40.000 27.93 20.73 36.70 4.79
4453 5386 7.063074 CACCAATAGACGTAACAAAAGGTAGAG 59.937 40.741 0.00 0.00 0.00 2.43
4678 5670 0.889186 GGCCTTCTCGTTCCAAAGCA 60.889 55.000 0.00 0.00 0.00 3.91
4681 5673 0.036306 GAGGGCCTTCTCGTTCCAAA 59.964 55.000 7.89 0.00 0.00 3.28
4730 5722 8.032411 TGCTTAGCAAAACCCTGAAATATGGG 62.032 42.308 3.67 0.00 41.75 4.00
4734 5726 5.076873 ACTGCTTAGCAAAACCCTGAAATA 58.923 37.500 8.68 0.00 38.41 1.40
4841 5834 3.500680 ACAAACTGTTCACGTCACAAACT 59.499 39.130 0.00 0.00 0.00 2.66
4929 5927 4.945246 ACTATACTGGCGTACATGGAAAG 58.055 43.478 0.00 0.00 0.00 2.62
4934 5932 7.114953 CACATAGAAACTATACTGGCGTACATG 59.885 40.741 0.00 0.00 0.00 3.21
4939 5937 4.369182 GCACATAGAAACTATACTGGCGT 58.631 43.478 0.00 0.00 0.00 5.68
4949 5947 6.573434 TGAATATCTGACGCACATAGAAACT 58.427 36.000 0.00 0.00 0.00 2.66
4952 5950 5.406477 GCATGAATATCTGACGCACATAGAA 59.594 40.000 0.00 0.00 0.00 2.10
4953 5951 4.925646 GCATGAATATCTGACGCACATAGA 59.074 41.667 0.00 0.00 0.00 1.98
4954 5952 4.928020 AGCATGAATATCTGACGCACATAG 59.072 41.667 0.00 0.00 0.00 2.23
4955 5953 4.886579 AGCATGAATATCTGACGCACATA 58.113 39.130 0.00 0.00 0.00 2.29
4956 5954 3.736720 AGCATGAATATCTGACGCACAT 58.263 40.909 0.00 0.00 0.00 3.21
4957 5955 3.183793 AGCATGAATATCTGACGCACA 57.816 42.857 0.00 0.00 0.00 4.57
4958 5956 3.847467 GCAAGCATGAATATCTGACGCAC 60.847 47.826 0.00 0.00 0.00 5.34
4959 5957 2.288729 GCAAGCATGAATATCTGACGCA 59.711 45.455 0.00 0.00 0.00 5.24
4961 5959 3.603173 CGTGCAAGCATGAATATCTGACG 60.603 47.826 8.54 0.00 35.09 4.35
4962 5960 3.310774 ACGTGCAAGCATGAATATCTGAC 59.689 43.478 20.14 0.00 36.80 3.51
4963 5961 3.534554 ACGTGCAAGCATGAATATCTGA 58.465 40.909 20.14 0.00 36.80 3.27
4964 5962 3.310501 TGACGTGCAAGCATGAATATCTG 59.689 43.478 20.14 0.00 36.80 2.90
4965 5963 3.534554 TGACGTGCAAGCATGAATATCT 58.465 40.909 20.14 0.00 36.80 1.98
4966 5964 3.310774 ACTGACGTGCAAGCATGAATATC 59.689 43.478 20.14 8.19 36.80 1.63
4967 5965 3.273434 ACTGACGTGCAAGCATGAATAT 58.727 40.909 20.14 0.00 36.80 1.28
4968 5966 2.672874 GACTGACGTGCAAGCATGAATA 59.327 45.455 20.14 5.68 36.80 1.75
4970 5968 0.867746 GACTGACGTGCAAGCATGAA 59.132 50.000 20.14 7.57 36.80 2.57
4971 5969 0.033920 AGACTGACGTGCAAGCATGA 59.966 50.000 20.14 0.00 36.80 3.07
4972 5970 0.441533 GAGACTGACGTGCAAGCATG 59.558 55.000 12.42 12.42 38.78 4.06
4973 5971 0.319728 AGAGACTGACGTGCAAGCAT 59.680 50.000 0.00 0.00 0.00 3.79
5003 6051 6.419413 TCAATTTTACGCCAGACAACAATTTC 59.581 34.615 0.00 0.00 0.00 2.17
5004 6052 6.276847 TCAATTTTACGCCAGACAACAATTT 58.723 32.000 0.00 0.00 0.00 1.82
5005 6053 5.837437 TCAATTTTACGCCAGACAACAATT 58.163 33.333 0.00 0.00 0.00 2.32
5006 6054 5.446143 TCAATTTTACGCCAGACAACAAT 57.554 34.783 0.00 0.00 0.00 2.71
5007 6055 4.902443 TCAATTTTACGCCAGACAACAA 57.098 36.364 0.00 0.00 0.00 2.83
5008 6056 4.902443 TTCAATTTTACGCCAGACAACA 57.098 36.364 0.00 0.00 0.00 3.33
5009 6057 5.388371 GCATTTCAATTTTACGCCAGACAAC 60.388 40.000 0.00 0.00 0.00 3.32
5010 6058 4.683781 GCATTTCAATTTTACGCCAGACAA 59.316 37.500 0.00 0.00 0.00 3.18
5011 6059 4.233789 GCATTTCAATTTTACGCCAGACA 58.766 39.130 0.00 0.00 0.00 3.41
5012 6060 3.300590 CGCATTTCAATTTTACGCCAGAC 59.699 43.478 0.00 0.00 0.00 3.51
5013 6061 3.189495 TCGCATTTCAATTTTACGCCAGA 59.811 39.130 0.00 0.00 0.00 3.86
5014 6062 3.497118 TCGCATTTCAATTTTACGCCAG 58.503 40.909 0.00 0.00 0.00 4.85
5017 6065 4.323336 ACACATCGCATTTCAATTTTACGC 59.677 37.500 0.00 0.00 0.00 4.42
5021 6069 7.887996 ATAACACACATCGCATTTCAATTTT 57.112 28.000 0.00 0.00 0.00 1.82
5022 6070 8.243426 ACTATAACACACATCGCATTTCAATTT 58.757 29.630 0.00 0.00 0.00 1.82
5047 6101 7.649057 TCAGTGCATACATACACAGAGTATAC 58.351 38.462 0.00 0.00 41.47 1.47
5051 6105 4.706962 TCTCAGTGCATACATACACAGAGT 59.293 41.667 13.06 0.00 45.44 3.24
5052 6106 5.254339 TCTCAGTGCATACATACACAGAG 57.746 43.478 8.68 8.68 46.15 3.35
5053 6107 5.047377 TGTTCTCAGTGCATACATACACAGA 60.047 40.000 0.00 0.00 39.30 3.41
5054 6108 5.170748 TGTTCTCAGTGCATACATACACAG 58.829 41.667 0.00 0.00 39.30 3.66
5056 6110 5.812127 TCATGTTCTCAGTGCATACATACAC 59.188 40.000 0.00 0.00 37.05 2.90
5076 6133 9.861138 GTTTTCGAGATCTAAAAGATGATCATG 57.139 33.333 14.30 0.00 40.92 3.07
5164 6221 1.084370 AAACTATCGCCTGCTGTCGC 61.084 55.000 0.00 0.00 0.00 5.19
5242 6299 5.975693 AACACATTATACACAACCAAGGG 57.024 39.130 0.00 0.00 0.00 3.95
5275 6333 6.751888 GCACAAAGTGTAAAGTCAAGAAATGT 59.248 34.615 0.00 0.00 35.75 2.71
5316 6374 5.756195 TGTTTCTGTCCATGAAAACTCAG 57.244 39.130 0.00 0.00 35.54 3.35
5324 6382 4.531854 TGTCCTTTTGTTTCTGTCCATGA 58.468 39.130 0.00 0.00 0.00 3.07
5329 6387 7.657336 TCCAATTATGTCCTTTTGTTTCTGTC 58.343 34.615 0.00 0.00 0.00 3.51
5506 6566 8.554011 ACCAACCCAAATAATATGTACTGTAGT 58.446 33.333 0.00 0.00 0.00 2.73
5507 6567 8.836413 CACCAACCCAAATAATATGTACTGTAG 58.164 37.037 0.00 0.00 0.00 2.74
5508 6568 7.776030 CCACCAACCCAAATAATATGTACTGTA 59.224 37.037 0.00 0.00 0.00 2.74
5509 6569 6.605594 CCACCAACCCAAATAATATGTACTGT 59.394 38.462 0.00 0.00 0.00 3.55
5510 6570 6.605594 ACCACCAACCCAAATAATATGTACTG 59.394 38.462 0.00 0.00 0.00 2.74
5511 6571 6.737608 ACCACCAACCCAAATAATATGTACT 58.262 36.000 0.00 0.00 0.00 2.73
5512 6572 6.238538 CGACCACCAACCCAAATAATATGTAC 60.239 42.308 0.00 0.00 0.00 2.90
5513 6573 5.823570 CGACCACCAACCCAAATAATATGTA 59.176 40.000 0.00 0.00 0.00 2.29
5538 6598 6.128200 GGTTTCGGGAAAGATACGTAATTTGT 60.128 38.462 12.34 0.00 0.00 2.83
5539 6599 6.093082 AGGTTTCGGGAAAGATACGTAATTTG 59.907 38.462 12.34 1.66 0.00 2.32
5583 6643 1.069906 GCTTGCTTGTGTACTTGGTCG 60.070 52.381 0.00 0.00 0.00 4.79
5599 6659 7.275888 AGATAGTAGAACATCTCTGAGCTTG 57.724 40.000 0.00 3.05 35.41 4.01
5600 6660 7.896383 AAGATAGTAGAACATCTCTGAGCTT 57.104 36.000 0.00 0.00 35.41 3.74
5601 6661 7.896383 AAAGATAGTAGAACATCTCTGAGCT 57.104 36.000 0.00 0.00 35.41 4.09
5602 6662 8.194104 TGAAAAGATAGTAGAACATCTCTGAGC 58.806 37.037 0.00 0.00 35.41 4.26
5603 6663 9.734620 CTGAAAAGATAGTAGAACATCTCTGAG 57.265 37.037 0.00 0.00 35.41 3.35
5605 6665 9.868277 AACTGAAAAGATAGTAGAACATCTCTG 57.132 33.333 0.00 0.00 35.41 3.35
5611 6671 9.607988 TGACAAAACTGAAAAGATAGTAGAACA 57.392 29.630 0.00 0.00 0.00 3.18
5614 6674 9.778741 ACATGACAAAACTGAAAAGATAGTAGA 57.221 29.630 0.00 0.00 0.00 2.59
5616 6676 8.708742 CGACATGACAAAACTGAAAAGATAGTA 58.291 33.333 0.00 0.00 0.00 1.82
5617 6677 7.307989 CCGACATGACAAAACTGAAAAGATAGT 60.308 37.037 0.00 0.00 0.00 2.12
5618 6678 7.017645 CCGACATGACAAAACTGAAAAGATAG 58.982 38.462 0.00 0.00 0.00 2.08
5619 6679 6.485313 ACCGACATGACAAAACTGAAAAGATA 59.515 34.615 0.00 0.00 0.00 1.98
5620 6680 5.299279 ACCGACATGACAAAACTGAAAAGAT 59.701 36.000 0.00 0.00 0.00 2.40
5621 6681 4.638421 ACCGACATGACAAAACTGAAAAGA 59.362 37.500 0.00 0.00 0.00 2.52
5622 6682 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
5623 6683 4.201970 GGACCGACATGACAAAACTGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
5624 6684 3.314080 GGACCGACATGACAAAACTGAAA 59.686 43.478 0.00 0.00 0.00 2.69
5625 6685 2.875933 GGACCGACATGACAAAACTGAA 59.124 45.455 0.00 0.00 0.00 3.02
5626 6686 2.104111 AGGACCGACATGACAAAACTGA 59.896 45.455 0.00 0.00 0.00 3.41
5627 6687 2.494059 AGGACCGACATGACAAAACTG 58.506 47.619 0.00 0.00 0.00 3.16
5628 6688 2.930826 AGGACCGACATGACAAAACT 57.069 45.000 0.00 0.00 0.00 2.66
5629 6689 3.810941 TGTAAGGACCGACATGACAAAAC 59.189 43.478 0.00 0.00 0.00 2.43
5630 6690 4.074627 TGTAAGGACCGACATGACAAAA 57.925 40.909 0.00 0.00 0.00 2.44
5631 6691 3.755112 TGTAAGGACCGACATGACAAA 57.245 42.857 0.00 0.00 0.00 2.83
5632 6692 3.973206 ATGTAAGGACCGACATGACAA 57.027 42.857 12.72 0.00 34.98 3.18
5675 6735 9.151471 GCATGGTAATACGTGTCTCATTTATAT 57.849 33.333 0.00 0.00 0.00 0.86
5676 6736 8.145122 TGCATGGTAATACGTGTCTCATTTATA 58.855 33.333 0.00 0.00 0.00 0.98
5677 6737 6.989759 TGCATGGTAATACGTGTCTCATTTAT 59.010 34.615 0.00 0.00 0.00 1.40
5678 6738 6.342111 TGCATGGTAATACGTGTCTCATTTA 58.658 36.000 0.00 0.00 0.00 1.40
5679 6739 5.182487 TGCATGGTAATACGTGTCTCATTT 58.818 37.500 0.00 0.00 0.00 2.32
5680 6740 4.765273 TGCATGGTAATACGTGTCTCATT 58.235 39.130 0.00 0.00 0.00 2.57
5681 6741 4.400529 TGCATGGTAATACGTGTCTCAT 57.599 40.909 0.00 0.00 0.00 2.90
5682 6742 3.878160 TGCATGGTAATACGTGTCTCA 57.122 42.857 0.00 0.00 0.00 3.27
5683 6743 3.308866 GGTTGCATGGTAATACGTGTCTC 59.691 47.826 0.00 0.00 0.00 3.36
5684 6744 3.267483 GGTTGCATGGTAATACGTGTCT 58.733 45.455 0.00 0.00 0.00 3.41
5685 6745 2.353579 GGGTTGCATGGTAATACGTGTC 59.646 50.000 0.00 0.00 0.00 3.67
5686 6746 2.290387 TGGGTTGCATGGTAATACGTGT 60.290 45.455 0.00 0.00 0.00 4.49
5687 6747 2.354510 CTGGGTTGCATGGTAATACGTG 59.645 50.000 0.00 0.00 0.00 4.49
5688 6748 2.639065 CTGGGTTGCATGGTAATACGT 58.361 47.619 0.00 0.00 0.00 3.57
5689 6749 1.333619 GCTGGGTTGCATGGTAATACG 59.666 52.381 0.00 0.00 0.00 3.06
5690 6750 1.333619 CGCTGGGTTGCATGGTAATAC 59.666 52.381 0.00 0.00 0.00 1.89
5691 6751 1.674359 CGCTGGGTTGCATGGTAATA 58.326 50.000 0.00 0.00 0.00 0.98
5692 6752 1.666209 GCGCTGGGTTGCATGGTAAT 61.666 55.000 0.00 0.00 0.00 1.89
5693 6753 2.339556 GCGCTGGGTTGCATGGTAA 61.340 57.895 0.00 0.00 0.00 2.85
5694 6754 2.749839 GCGCTGGGTTGCATGGTA 60.750 61.111 0.00 0.00 0.00 3.25
5695 6755 4.972733 TGCGCTGGGTTGCATGGT 62.973 61.111 9.73 0.00 35.90 3.55
5696 6756 2.712325 TTTTGCGCTGGGTTGCATGG 62.712 55.000 9.73 0.00 41.42 3.66
5697 6757 1.286354 CTTTTGCGCTGGGTTGCATG 61.286 55.000 9.73 0.00 41.42 4.06
5698 6758 1.005867 CTTTTGCGCTGGGTTGCAT 60.006 52.632 9.73 0.00 41.42 3.96
5699 6759 1.670949 TTCTTTTGCGCTGGGTTGCA 61.671 50.000 9.73 0.00 39.81 4.08
5700 6760 0.319813 ATTCTTTTGCGCTGGGTTGC 60.320 50.000 9.73 0.00 0.00 4.17
5701 6761 2.153366 AATTCTTTTGCGCTGGGTTG 57.847 45.000 9.73 0.00 0.00 3.77
5702 6762 4.705023 AGTATAATTCTTTTGCGCTGGGTT 59.295 37.500 9.73 0.00 0.00 4.11
5703 6763 4.270008 AGTATAATTCTTTTGCGCTGGGT 58.730 39.130 9.73 0.00 0.00 4.51
5707 6767 9.542462 TTGAGTATAGTATAATTCTTTTGCGCT 57.458 29.630 9.73 0.00 0.00 5.92
5726 6786 6.983307 GCATCATGTGAGTAGAACTTGAGTAT 59.017 38.462 0.00 0.00 35.81 2.12
5727 6787 6.153510 AGCATCATGTGAGTAGAACTTGAGTA 59.846 38.462 0.00 0.00 35.81 2.59
5728 6788 5.046735 AGCATCATGTGAGTAGAACTTGAGT 60.047 40.000 0.00 0.00 35.81 3.41
5729 6789 5.417811 AGCATCATGTGAGTAGAACTTGAG 58.582 41.667 0.00 0.00 35.81 3.02
5730 6790 5.411831 AGCATCATGTGAGTAGAACTTGA 57.588 39.130 0.00 0.00 36.50 3.02
5731 6791 6.492007 AAAGCATCATGTGAGTAGAACTTG 57.508 37.500 0.00 0.00 0.00 3.16
5732 6792 7.516198 AAAAAGCATCATGTGAGTAGAACTT 57.484 32.000 0.00 0.00 0.00 2.66
5743 6803 3.193267 ACCACGCATAAAAAGCATCATGT 59.807 39.130 0.00 0.00 0.00 3.21
5774 6834 5.904362 ATTTCATACCCTGCAAAAGACTC 57.096 39.130 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.