Multiple sequence alignment - TraesCS4D01G219700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G219700 chr4D 100.000 2639 0 0 1 2639 375115552 375118190 0.000000e+00 4874.0
1 TraesCS4D01G219700 chr4D 80.187 747 115 19 909 1647 414328434 414327713 1.800000e-146 529.0
2 TraesCS4D01G219700 chr4D 86.897 145 18 1 767 911 414350013 414349870 7.560000e-36 161.0
3 TraesCS4D01G219700 chr4D 85.294 136 20 0 776 911 414371354 414371219 9.850000e-30 141.0
4 TraesCS4D01G219700 chr4D 89.286 56 4 2 2096 2150 438148793 438148739 4.710000e-08 69.4
5 TraesCS4D01G219700 chr3B 90.324 2191 153 29 1 2147 203612312 203614487 0.000000e+00 2817.0
6 TraesCS4D01G219700 chr3B 91.383 499 40 3 2141 2639 548054330 548053835 0.000000e+00 680.0
7 TraesCS4D01G219700 chr3B 83.686 331 52 2 909 1239 25907251 25907579 7.090000e-81 311.0
8 TraesCS4D01G219700 chr3B 83.686 331 52 2 909 1239 26232686 26233014 7.090000e-81 311.0
9 TraesCS4D01G219700 chr3B 83.686 331 52 2 909 1239 26385903 26386231 7.090000e-81 311.0
10 TraesCS4D01G219700 chr3B 83.384 331 53 2 909 1239 26043709 26044037 3.300000e-79 305.0
11 TraesCS4D01G219700 chr3A 88.895 1837 140 32 2 1819 159994667 159996458 0.000000e+00 2204.0
12 TraesCS4D01G219700 chr3A 86.176 2105 163 51 103 2147 160015926 160017962 0.000000e+00 2158.0
13 TraesCS4D01G219700 chr3A 83.988 331 51 2 909 1239 17433633 17433961 1.520000e-82 316.0
14 TraesCS4D01G219700 chr3D 89.885 1740 121 33 103 1819 141649958 141651665 0.000000e+00 2187.0
15 TraesCS4D01G219700 chr3D 89.759 332 26 3 107 431 141596788 141597118 4.060000e-113 418.0
16 TraesCS4D01G219700 chr3D 84.956 339 29 11 1820 2147 141652494 141652821 9.110000e-85 324.0
17 TraesCS4D01G219700 chr3D 77.228 303 69 0 1322 1624 10804765 10805067 7.510000e-41 178.0
18 TraesCS4D01G219700 chr3D 90.400 125 11 1 1 125 141451744 141451867 2.100000e-36 163.0
19 TraesCS4D01G219700 chr5D 91.751 497 35 4 2146 2639 545283067 545282574 0.000000e+00 686.0
20 TraesCS4D01G219700 chr5D 91.700 494 35 6 2146 2639 442674130 442673643 0.000000e+00 680.0
21 TraesCS4D01G219700 chr5D 90.726 496 41 5 2147 2639 554752823 554752330 0.000000e+00 656.0
22 TraesCS4D01G219700 chr6B 91.200 500 42 2 2140 2639 152401390 152400893 0.000000e+00 678.0
23 TraesCS4D01G219700 chr1D 91.481 493 37 5 2147 2639 289773033 289773520 0.000000e+00 673.0
24 TraesCS4D01G219700 chr5B 91.111 495 41 3 2147 2639 265436452 265435959 0.000000e+00 667.0
25 TraesCS4D01G219700 chr6D 90.946 497 37 8 2145 2639 156699003 156698513 0.000000e+00 662.0
26 TraesCS4D01G219700 chr6A 90.744 497 39 7 2145 2639 212583333 212583824 0.000000e+00 656.0
27 TraesCS4D01G219700 chr4A 80.111 719 113 18 909 1624 49200043 49200734 2.340000e-140 508.0
28 TraesCS4D01G219700 chr7B 92.308 39 2 1 2109 2147 71830341 71830378 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G219700 chr4D 375115552 375118190 2638 False 4874.0 4874 100.0000 1 2639 1 chr4D.!!$F1 2638
1 TraesCS4D01G219700 chr4D 414327713 414328434 721 True 529.0 529 80.1870 909 1647 1 chr4D.!!$R1 738
2 TraesCS4D01G219700 chr3B 203612312 203614487 2175 False 2817.0 2817 90.3240 1 2147 1 chr3B.!!$F5 2146
3 TraesCS4D01G219700 chr3A 159994667 159996458 1791 False 2204.0 2204 88.8950 2 1819 1 chr3A.!!$F2 1817
4 TraesCS4D01G219700 chr3A 160015926 160017962 2036 False 2158.0 2158 86.1760 103 2147 1 chr3A.!!$F3 2044
5 TraesCS4D01G219700 chr3D 141649958 141652821 2863 False 1255.5 2187 87.4205 103 2147 2 chr3D.!!$F4 2044
6 TraesCS4D01G219700 chr4A 49200043 49200734 691 False 508.0 508 80.1110 909 1624 1 chr4A.!!$F1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 840 0.179084 GAGCTATTGCGGTGGTGCTA 60.179 55.0 0.0 0.0 45.42 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2595 3491 0.168788 CGTAGCCACCGACGTAGAAA 59.831 55.0 0.0 0.0 35.7 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.132834 TGATTTGATCCATGTGCACGC 59.867 47.619 13.13 0.00 0.00 5.34
22 23 2.106477 TTTGATCCATGTGCACGCTA 57.894 45.000 13.13 0.00 0.00 4.26
26 27 2.279741 GATCCATGTGCACGCTAAGAA 58.720 47.619 13.13 0.00 0.00 2.52
62 63 2.350804 GACGGCCTAAAAATTCGACCTC 59.649 50.000 0.00 0.00 0.00 3.85
87 88 4.520492 AGCCAAATCAAAATCAGTCGACTT 59.480 37.500 17.26 0.00 0.00 3.01
148 149 2.509786 GGGCGCCGTTCGATGTTA 60.510 61.111 22.54 0.00 41.67 2.41
159 160 3.606687 GTTCGATGTTATGGACCAGGTT 58.393 45.455 0.00 0.00 0.00 3.50
167 168 2.969821 ATGGACCAGGTTTAGTGCAA 57.030 45.000 0.00 0.00 37.88 4.08
184 185 1.258982 GCAAGATCAGCCGTACGATTG 59.741 52.381 18.76 14.25 0.00 2.67
208 212 5.420409 GAGGAACATACGAGACATCCTTTT 58.580 41.667 0.00 0.00 37.42 2.27
220 224 4.597507 AGACATCCTTTTGTAGACAAGGGA 59.402 41.667 16.23 16.23 40.21 4.20
284 290 9.768215 AAAGTCAATCAAATATCCTCCCTTAAA 57.232 29.630 0.00 0.00 0.00 1.52
285 291 9.768215 AAGTCAATCAAATATCCTCCCTTAAAA 57.232 29.630 0.00 0.00 0.00 1.52
306 316 7.945033 AAAAATGAAAACGTCAAGCATACAT 57.055 28.000 0.00 0.00 40.50 2.29
308 318 8.447787 AAAATGAAAACGTCAAGCATACATAC 57.552 30.769 0.00 0.00 40.50 2.39
309 319 6.985188 ATGAAAACGTCAAGCATACATACT 57.015 33.333 0.00 0.00 40.50 2.12
340 350 1.087771 AAACGCCGCCTATTTCCTCG 61.088 55.000 0.00 0.00 0.00 4.63
350 360 1.852895 CTATTTCCTCGGAAAGCGTCG 59.147 52.381 15.56 0.00 45.66 5.12
401 411 3.609853 AGACACTGTGTGAAGCAAAGAA 58.390 40.909 19.62 0.00 35.96 2.52
489 519 1.799181 CGTGTCTGCGGATTAGTCCAG 60.799 57.143 0.00 0.00 45.37 3.86
554 592 0.678950 TCGTGATGACCTTGCTGACA 59.321 50.000 0.00 0.00 0.00 3.58
624 662 6.849305 CACATAATCATCACAACATCATCACG 59.151 38.462 0.00 0.00 0.00 4.35
700 741 2.568623 AACACACAGTTCCCAGATCC 57.431 50.000 0.00 0.00 34.74 3.36
799 840 0.179084 GAGCTATTGCGGTGGTGCTA 60.179 55.000 0.00 0.00 45.42 3.49
811 852 0.386476 TGGTGCTACTCACGTTCGTT 59.614 50.000 0.00 0.00 46.56 3.85
887 928 4.867599 CGACCTTCTACGGCGGCC 62.868 72.222 13.24 9.54 0.00 6.13
1045 1086 3.058160 GACCGCACAAGCTGGCAT 61.058 61.111 6.16 0.00 37.76 4.40
1071 1112 2.441164 TGGTGCAAACCAGGCGTT 60.441 55.556 0.00 0.00 34.33 4.84
1206 1247 2.997986 GGAGAAGATCGGCGTTTACAAA 59.002 45.455 6.85 0.00 0.00 2.83
1332 1381 2.237893 TCGATTTTTCTGTAGGGTCCCC 59.762 50.000 3.51 0.00 0.00 4.81
1412 1461 4.260194 TGTGATGAACGTCGCAGG 57.740 55.556 6.23 0.00 33.96 4.85
1452 1501 3.370209 CCATGGATGTCAAGAGCTCTGAA 60.370 47.826 19.06 5.52 0.00 3.02
1629 1678 5.152097 CAAACATTTGCAAGCAAACAACAA 58.848 33.333 21.04 0.00 46.80 2.83
1784 1838 8.029522 CCACTTCTTGTATATACGCTACATCAT 58.970 37.037 8.33 0.00 0.00 2.45
1878 2762 6.701841 TGATTCTACCGAGTTTCATCTAATGC 59.298 38.462 0.00 0.00 0.00 3.56
1888 2773 8.950961 CGAGTTTCATCTAATGCATATTTTGTG 58.049 33.333 0.00 0.00 0.00 3.33
1897 2782 9.225436 TCTAATGCATATTTTGTGTACTTGTGA 57.775 29.630 0.00 0.00 0.00 3.58
1900 2785 8.746922 ATGCATATTTTGTGTACTTGTGAAAG 57.253 30.769 0.00 0.00 0.00 2.62
1931 2820 9.814899 CATAACAATATAAGGCAAAATGGTTGA 57.185 29.630 0.00 0.00 0.00 3.18
1937 2826 1.069049 AGGCAAAATGGTTGAGTGCAC 59.931 47.619 9.40 9.40 36.93 4.57
1949 2838 3.678915 TGAGTGCACAATAATGATGCG 57.321 42.857 21.04 0.00 42.44 4.73
1950 2839 3.269178 TGAGTGCACAATAATGATGCGA 58.731 40.909 21.04 0.00 42.44 5.10
1957 2846 2.033801 ACAATAATGATGCGAAGGCTGC 59.966 45.455 0.00 0.00 40.82 5.25
1974 2863 2.035155 CGGTGAACCCCCTTTCCC 59.965 66.667 0.00 0.00 0.00 3.97
1980 2872 1.338107 GAACCCCCTTTCCCAAACAG 58.662 55.000 0.00 0.00 0.00 3.16
1990 2882 2.747396 TCCCAAACAGTATAACGCGT 57.253 45.000 5.58 5.58 0.00 6.01
1997 2889 8.306038 TCCCAAACAGTATAACGCGTTATATAT 58.694 33.333 39.28 30.91 39.40 0.86
2080 2972 3.054434 ACAAGGGAATGTGATCGGATGAA 60.054 43.478 0.00 0.00 30.82 2.57
2111 3005 0.400594 CGAAAAGGAGGACAACCCCT 59.599 55.000 0.00 0.00 38.08 4.79
2147 3043 4.031028 GCGATGCACACAATCATCTTTAC 58.969 43.478 0.00 0.00 37.52 2.01
2148 3044 4.201851 GCGATGCACACAATCATCTTTACT 60.202 41.667 0.00 0.00 37.52 2.24
2149 3045 5.006649 GCGATGCACACAATCATCTTTACTA 59.993 40.000 0.00 0.00 37.52 1.82
2150 3046 6.643845 CGATGCACACAATCATCTTTACTAG 58.356 40.000 0.00 0.00 37.52 2.57
2151 3047 6.476706 CGATGCACACAATCATCTTTACTAGA 59.523 38.462 0.00 0.00 37.52 2.43
2152 3048 7.010460 CGATGCACACAATCATCTTTACTAGAA 59.990 37.037 0.00 0.00 37.52 2.10
2153 3049 7.601073 TGCACACAATCATCTTTACTAGAAG 57.399 36.000 0.00 0.00 36.22 2.85
2154 3050 6.595326 TGCACACAATCATCTTTACTAGAAGG 59.405 38.462 0.00 0.00 36.22 3.46
2155 3051 6.595716 GCACACAATCATCTTTACTAGAAGGT 59.404 38.462 0.00 0.00 36.22 3.50
2156 3052 7.119846 GCACACAATCATCTTTACTAGAAGGTT 59.880 37.037 0.00 0.00 36.22 3.50
2157 3053 9.003658 CACACAATCATCTTTACTAGAAGGTTT 57.996 33.333 0.00 0.00 36.22 3.27
2158 3054 9.003658 ACACAATCATCTTTACTAGAAGGTTTG 57.996 33.333 0.00 0.00 36.22 2.93
2159 3055 8.454106 CACAATCATCTTTACTAGAAGGTTTGG 58.546 37.037 0.00 0.00 36.22 3.28
2160 3056 7.611855 ACAATCATCTTTACTAGAAGGTTTGGG 59.388 37.037 0.00 0.00 36.22 4.12
2161 3057 5.497474 TCATCTTTACTAGAAGGTTTGGGC 58.503 41.667 0.00 0.00 36.22 5.36
2162 3058 3.934068 TCTTTACTAGAAGGTTTGGGCG 58.066 45.455 0.00 0.00 0.00 6.13
2163 3059 2.103537 TTACTAGAAGGTTTGGGCGC 57.896 50.000 0.00 0.00 0.00 6.53
2164 3060 0.108520 TACTAGAAGGTTTGGGCGCG 60.109 55.000 0.00 0.00 0.00 6.86
2165 3061 2.744709 TAGAAGGTTTGGGCGCGC 60.745 61.111 25.94 25.94 0.00 6.86
2166 3062 3.248446 TAGAAGGTTTGGGCGCGCT 62.248 57.895 32.29 8.24 0.00 5.92
2167 3063 2.741486 TAGAAGGTTTGGGCGCGCTT 62.741 55.000 32.29 15.66 0.00 4.68
2168 3064 3.207547 GAAGGTTTGGGCGCGCTTT 62.208 57.895 32.29 13.38 0.00 3.51
2169 3065 3.498401 AAGGTTTGGGCGCGCTTTG 62.498 57.895 32.29 0.00 0.00 2.77
2171 3067 4.645921 GTTTGGGCGCGCTTTGCT 62.646 61.111 32.29 0.00 43.27 3.91
2172 3068 4.644230 TTTGGGCGCGCTTTGCTG 62.644 61.111 32.29 0.00 43.27 4.41
2181 3077 4.729856 GCTTTGCTGCGCCCTTGG 62.730 66.667 4.18 0.00 0.00 3.61
2182 3078 3.297620 CTTTGCTGCGCCCTTGGT 61.298 61.111 4.18 0.00 0.00 3.67
2183 3079 3.562779 CTTTGCTGCGCCCTTGGTG 62.563 63.158 4.18 0.00 36.10 4.17
2184 3080 4.892965 TTGCTGCGCCCTTGGTGT 62.893 61.111 4.18 0.00 35.34 4.16
2185 3081 4.892965 TGCTGCGCCCTTGGTGTT 62.893 61.111 4.18 0.00 35.34 3.32
2186 3082 4.347453 GCTGCGCCCTTGGTGTTG 62.347 66.667 4.18 0.00 35.34 3.33
2187 3083 2.906897 CTGCGCCCTTGGTGTTGT 60.907 61.111 4.18 0.00 35.34 3.32
2188 3084 2.441164 TGCGCCCTTGGTGTTGTT 60.441 55.556 4.18 0.00 35.34 2.83
2189 3085 2.027460 GCGCCCTTGGTGTTGTTG 59.973 61.111 0.00 0.00 35.34 3.33
2190 3086 2.485795 GCGCCCTTGGTGTTGTTGA 61.486 57.895 0.00 0.00 35.34 3.18
2191 3087 1.654220 CGCCCTTGGTGTTGTTGAG 59.346 57.895 0.00 0.00 0.00 3.02
2192 3088 0.817634 CGCCCTTGGTGTTGTTGAGA 60.818 55.000 0.00 0.00 0.00 3.27
2193 3089 1.620822 GCCCTTGGTGTTGTTGAGAT 58.379 50.000 0.00 0.00 0.00 2.75
2194 3090 1.963515 GCCCTTGGTGTTGTTGAGATT 59.036 47.619 0.00 0.00 0.00 2.40
2195 3091 2.029918 GCCCTTGGTGTTGTTGAGATTC 60.030 50.000 0.00 0.00 0.00 2.52
2196 3092 3.490348 CCCTTGGTGTTGTTGAGATTCT 58.510 45.455 0.00 0.00 0.00 2.40
2197 3093 4.651778 CCCTTGGTGTTGTTGAGATTCTA 58.348 43.478 0.00 0.00 0.00 2.10
2198 3094 5.070001 CCCTTGGTGTTGTTGAGATTCTAA 58.930 41.667 0.00 0.00 0.00 2.10
2199 3095 5.534654 CCCTTGGTGTTGTTGAGATTCTAAA 59.465 40.000 0.00 0.00 0.00 1.85
2200 3096 6.040391 CCCTTGGTGTTGTTGAGATTCTAAAA 59.960 38.462 0.00 0.00 0.00 1.52
2201 3097 7.417342 CCCTTGGTGTTGTTGAGATTCTAAAAA 60.417 37.037 0.00 0.00 0.00 1.94
2265 3161 8.996024 TTTTTGAAAAGTCCAACCTCTTTAAG 57.004 30.769 0.00 0.00 34.14 1.85
2266 3162 7.712204 TTTGAAAAGTCCAACCTCTTTAAGT 57.288 32.000 0.00 0.00 34.14 2.24
2267 3163 6.693315 TGAAAAGTCCAACCTCTTTAAGTG 57.307 37.500 0.00 0.00 34.14 3.16
2268 3164 6.184789 TGAAAAGTCCAACCTCTTTAAGTGT 58.815 36.000 0.00 0.00 34.14 3.55
2269 3165 6.094881 TGAAAAGTCCAACCTCTTTAAGTGTG 59.905 38.462 0.00 0.00 34.14 3.82
2270 3166 5.367945 AAGTCCAACCTCTTTAAGTGTGA 57.632 39.130 0.00 0.00 0.00 3.58
2271 3167 5.568620 AGTCCAACCTCTTTAAGTGTGAT 57.431 39.130 0.00 0.00 0.00 3.06
2272 3168 5.552178 AGTCCAACCTCTTTAAGTGTGATC 58.448 41.667 0.00 0.00 0.00 2.92
2273 3169 5.071788 AGTCCAACCTCTTTAAGTGTGATCA 59.928 40.000 0.00 0.00 0.00 2.92
2274 3170 5.763204 GTCCAACCTCTTTAAGTGTGATCAA 59.237 40.000 0.00 0.00 0.00 2.57
2275 3171 6.262273 GTCCAACCTCTTTAAGTGTGATCAAA 59.738 38.462 0.00 0.00 0.00 2.69
2276 3172 7.004086 TCCAACCTCTTTAAGTGTGATCAAAT 58.996 34.615 0.00 0.00 0.00 2.32
2277 3173 7.505585 TCCAACCTCTTTAAGTGTGATCAAATT 59.494 33.333 0.00 0.00 0.00 1.82
2278 3174 8.143835 CCAACCTCTTTAAGTGTGATCAAATTT 58.856 33.333 0.00 0.00 0.00 1.82
2377 3273 6.618287 TTTGGCTTAATATTGAGGATGTCG 57.382 37.500 9.11 0.00 0.00 4.35
2378 3274 5.545063 TGGCTTAATATTGAGGATGTCGA 57.455 39.130 9.11 0.00 0.00 4.20
2379 3275 6.114187 TGGCTTAATATTGAGGATGTCGAT 57.886 37.500 9.11 0.00 33.40 3.59
2380 3276 7.239763 TGGCTTAATATTGAGGATGTCGATA 57.760 36.000 9.11 0.00 36.18 2.92
2381 3277 7.851228 TGGCTTAATATTGAGGATGTCGATAT 58.149 34.615 9.11 0.00 42.19 1.63
2383 3279 8.821894 GGCTTAATATTGAGGATGTCGATATTC 58.178 37.037 9.11 0.00 44.33 1.75
2384 3280 9.593134 GCTTAATATTGAGGATGTCGATATTCT 57.407 33.333 2.02 2.02 44.33 2.40
2388 3284 8.994429 ATATTGAGGATGTCGATATTCTTGAC 57.006 34.615 4.24 0.00 38.64 3.18
2389 3285 6.471233 TTGAGGATGTCGATATTCTTGACT 57.529 37.500 4.24 0.00 38.85 3.41
2390 3286 6.078202 TGAGGATGTCGATATTCTTGACTC 57.922 41.667 4.24 3.52 38.85 3.36
2391 3287 5.830457 TGAGGATGTCGATATTCTTGACTCT 59.170 40.000 4.24 0.00 38.85 3.24
2392 3288 6.998673 TGAGGATGTCGATATTCTTGACTCTA 59.001 38.462 4.24 0.00 38.85 2.43
2393 3289 7.502561 TGAGGATGTCGATATTCTTGACTCTAA 59.497 37.037 4.24 0.00 38.85 2.10
2394 3290 8.239038 AGGATGTCGATATTCTTGACTCTAAA 57.761 34.615 0.00 0.00 38.85 1.85
2395 3291 8.138712 AGGATGTCGATATTCTTGACTCTAAAC 58.861 37.037 0.00 0.00 38.85 2.01
2396 3292 8.138712 GGATGTCGATATTCTTGACTCTAAACT 58.861 37.037 0.00 0.00 38.85 2.66
2397 3293 9.522804 GATGTCGATATTCTTGACTCTAAACTT 57.477 33.333 0.00 0.00 38.85 2.66
2398 3294 8.689251 TGTCGATATTCTTGACTCTAAACTTG 57.311 34.615 0.00 0.00 38.85 3.16
2399 3295 7.759886 TGTCGATATTCTTGACTCTAAACTTGG 59.240 37.037 0.00 0.00 38.85 3.61
2400 3296 7.760340 GTCGATATTCTTGACTCTAAACTTGGT 59.240 37.037 0.00 0.00 35.63 3.67
2401 3297 7.974501 TCGATATTCTTGACTCTAAACTTGGTC 59.025 37.037 0.00 0.00 0.00 4.02
2402 3298 7.759886 CGATATTCTTGACTCTAAACTTGGTCA 59.240 37.037 0.00 0.00 37.00 4.02
2403 3299 9.436957 GATATTCTTGACTCTAAACTTGGTCAA 57.563 33.333 0.00 0.00 43.46 3.18
2404 3300 9.793259 ATATTCTTGACTCTAAACTTGGTCAAA 57.207 29.630 8.37 0.00 44.46 2.69
2405 3301 7.553881 TTCTTGACTCTAAACTTGGTCAAAG 57.446 36.000 8.37 0.00 44.46 2.77
2435 3331 9.500785 AAAGAAATTTGACTTTTCCAAAGAACA 57.499 25.926 0.00 1.21 37.00 3.18
2436 3332 9.500785 AAGAAATTTGACTTTTCCAAAGAACAA 57.499 25.926 0.00 6.43 37.00 2.83
2437 3333 9.500785 AGAAATTTGACTTTTCCAAAGAACAAA 57.499 25.926 18.32 18.32 37.00 2.83
2441 3337 8.710835 TTTGACTTTTCCAAAGAACAAATACC 57.289 30.769 15.15 0.00 0.00 2.73
2442 3338 6.811954 TGACTTTTCCAAAGAACAAATACCC 58.188 36.000 3.24 0.00 0.00 3.69
2443 3339 6.169557 ACTTTTCCAAAGAACAAATACCCC 57.830 37.500 3.24 0.00 0.00 4.95
2444 3340 5.903010 ACTTTTCCAAAGAACAAATACCCCT 59.097 36.000 3.24 0.00 0.00 4.79
2445 3341 6.385759 ACTTTTCCAAAGAACAAATACCCCTT 59.614 34.615 3.24 0.00 0.00 3.95
2446 3342 5.799827 TTCCAAAGAACAAATACCCCTTG 57.200 39.130 0.00 0.00 0.00 3.61
2447 3343 4.810345 TCCAAAGAACAAATACCCCTTGT 58.190 39.130 0.00 0.00 38.65 3.16
2448 3344 5.954757 TCCAAAGAACAAATACCCCTTGTA 58.045 37.500 0.00 0.00 35.98 2.41
2449 3345 6.557568 TCCAAAGAACAAATACCCCTTGTAT 58.442 36.000 0.00 0.00 42.06 2.29
2459 3355 6.850752 AATACCCCTTGTATTTTGGAACTG 57.149 37.500 0.00 0.00 45.78 3.16
2460 3356 4.463050 ACCCCTTGTATTTTGGAACTGA 57.537 40.909 0.00 0.00 0.00 3.41
2461 3357 5.010708 ACCCCTTGTATTTTGGAACTGAT 57.989 39.130 0.00 0.00 0.00 2.90
2462 3358 4.772100 ACCCCTTGTATTTTGGAACTGATG 59.228 41.667 0.00 0.00 0.00 3.07
2463 3359 4.160252 CCCCTTGTATTTTGGAACTGATGG 59.840 45.833 0.00 0.00 0.00 3.51
2464 3360 5.016173 CCCTTGTATTTTGGAACTGATGGA 58.984 41.667 0.00 0.00 0.00 3.41
2465 3361 5.126061 CCCTTGTATTTTGGAACTGATGGAG 59.874 44.000 0.00 0.00 0.00 3.86
2466 3362 5.711976 CCTTGTATTTTGGAACTGATGGAGT 59.288 40.000 0.00 0.00 35.94 3.85
2467 3363 6.884295 CCTTGTATTTTGGAACTGATGGAGTA 59.116 38.462 0.00 0.00 33.09 2.59
2468 3364 7.557719 CCTTGTATTTTGGAACTGATGGAGTAT 59.442 37.037 0.00 0.00 33.09 2.12
2469 3365 8.877864 TTGTATTTTGGAACTGATGGAGTATT 57.122 30.769 0.00 0.00 33.09 1.89
2470 3366 8.877864 TGTATTTTGGAACTGATGGAGTATTT 57.122 30.769 0.00 0.00 33.09 1.40
2471 3367 9.967451 TGTATTTTGGAACTGATGGAGTATTTA 57.033 29.630 0.00 0.00 33.09 1.40
2474 3370 8.934023 TTTTGGAACTGATGGAGTATTTAGTT 57.066 30.769 0.00 0.00 33.09 2.24
2475 3371 8.934023 TTTGGAACTGATGGAGTATTTAGTTT 57.066 30.769 0.00 0.00 33.09 2.66
2476 3372 7.921786 TGGAACTGATGGAGTATTTAGTTTG 57.078 36.000 0.00 0.00 33.09 2.93
2477 3373 7.685481 TGGAACTGATGGAGTATTTAGTTTGA 58.315 34.615 0.00 0.00 33.09 2.69
2478 3374 7.606456 TGGAACTGATGGAGTATTTAGTTTGAC 59.394 37.037 0.00 0.00 33.09 3.18
2479 3375 7.201530 GGAACTGATGGAGTATTTAGTTTGACG 60.202 40.741 0.00 0.00 33.09 4.35
2480 3376 6.106673 ACTGATGGAGTATTTAGTTTGACGG 58.893 40.000 0.00 0.00 30.86 4.79
2481 3377 6.070995 ACTGATGGAGTATTTAGTTTGACGGA 60.071 38.462 0.00 0.00 30.86 4.69
2482 3378 6.884832 TGATGGAGTATTTAGTTTGACGGAT 58.115 36.000 0.00 0.00 0.00 4.18
2483 3379 6.761242 TGATGGAGTATTTAGTTTGACGGATG 59.239 38.462 0.00 0.00 0.00 3.51
2484 3380 5.424757 TGGAGTATTTAGTTTGACGGATGG 58.575 41.667 0.00 0.00 0.00 3.51
2485 3381 4.814771 GGAGTATTTAGTTTGACGGATGGG 59.185 45.833 0.00 0.00 0.00 4.00
2486 3382 4.777463 AGTATTTAGTTTGACGGATGGGG 58.223 43.478 0.00 0.00 0.00 4.96
2487 3383 2.500392 TTTAGTTTGACGGATGGGGG 57.500 50.000 0.00 0.00 0.00 5.40
2488 3384 1.659022 TTAGTTTGACGGATGGGGGA 58.341 50.000 0.00 0.00 0.00 4.81
2489 3385 1.200519 TAGTTTGACGGATGGGGGAG 58.799 55.000 0.00 0.00 0.00 4.30
2490 3386 0.546747 AGTTTGACGGATGGGGGAGA 60.547 55.000 0.00 0.00 0.00 3.71
2491 3387 0.392595 GTTTGACGGATGGGGGAGAC 60.393 60.000 0.00 0.00 0.00 3.36
2492 3388 1.895020 TTTGACGGATGGGGGAGACG 61.895 60.000 0.00 0.00 0.00 4.18
2493 3389 2.441532 GACGGATGGGGGAGACGA 60.442 66.667 0.00 0.00 0.00 4.20
2494 3390 1.833049 GACGGATGGGGGAGACGAT 60.833 63.158 0.00 0.00 0.00 3.73
2495 3391 2.088674 GACGGATGGGGGAGACGATG 62.089 65.000 0.00 0.00 0.00 3.84
2496 3392 2.872388 CGGATGGGGGAGACGATGG 61.872 68.421 0.00 0.00 0.00 3.51
2497 3393 1.459539 GGATGGGGGAGACGATGGA 60.460 63.158 0.00 0.00 0.00 3.41
2498 3394 1.476007 GGATGGGGGAGACGATGGAG 61.476 65.000 0.00 0.00 0.00 3.86
2499 3395 2.105806 GATGGGGGAGACGATGGAGC 62.106 65.000 0.00 0.00 0.00 4.70
2500 3396 3.917760 GGGGGAGACGATGGAGCG 61.918 72.222 0.00 0.00 37.29 5.03
2502 3398 2.105128 GGGAGACGATGGAGCGTG 59.895 66.667 0.00 0.00 45.72 5.34
2503 3399 2.711922 GGGAGACGATGGAGCGTGT 61.712 63.158 0.00 0.00 45.72 4.49
2504 3400 1.215647 GGAGACGATGGAGCGTGTT 59.784 57.895 0.00 0.00 45.72 3.32
2505 3401 0.389948 GGAGACGATGGAGCGTGTTT 60.390 55.000 0.00 0.00 45.72 2.83
2506 3402 1.429463 GAGACGATGGAGCGTGTTTT 58.571 50.000 0.00 0.00 45.72 2.43
2507 3403 2.602878 GAGACGATGGAGCGTGTTTTA 58.397 47.619 0.00 0.00 45.72 1.52
2508 3404 3.187700 GAGACGATGGAGCGTGTTTTAT 58.812 45.455 0.00 0.00 45.72 1.40
2509 3405 2.930040 AGACGATGGAGCGTGTTTTATG 59.070 45.455 0.00 0.00 45.72 1.90
2510 3406 2.671396 GACGATGGAGCGTGTTTTATGT 59.329 45.455 0.00 0.00 45.72 2.29
2511 3407 3.071479 ACGATGGAGCGTGTTTTATGTT 58.929 40.909 0.00 0.00 43.79 2.71
2512 3408 3.500680 ACGATGGAGCGTGTTTTATGTTT 59.499 39.130 0.00 0.00 43.79 2.83
2513 3409 4.691685 ACGATGGAGCGTGTTTTATGTTTA 59.308 37.500 0.00 0.00 43.79 2.01
2514 3410 5.353123 ACGATGGAGCGTGTTTTATGTTTAT 59.647 36.000 0.00 0.00 43.79 1.40
2515 3411 6.128117 ACGATGGAGCGTGTTTTATGTTTATT 60.128 34.615 0.00 0.00 43.79 1.40
2516 3412 6.745450 CGATGGAGCGTGTTTTATGTTTATTT 59.255 34.615 0.00 0.00 0.00 1.40
2517 3413 7.906010 CGATGGAGCGTGTTTTATGTTTATTTA 59.094 33.333 0.00 0.00 0.00 1.40
2518 3414 9.730420 GATGGAGCGTGTTTTATGTTTATTTAT 57.270 29.630 0.00 0.00 0.00 1.40
2524 3420 9.758470 GCGTGTTTTATGTTTATTTATAATGCG 57.242 29.630 0.00 0.00 0.00 4.73
2536 3432 9.751542 TTTATTTATAATGCGGTTATTTGGTGG 57.248 29.630 0.26 0.00 34.82 4.61
2537 3433 5.776173 TTATAATGCGGTTATTTGGTGGG 57.224 39.130 0.26 0.00 34.82 4.61
2538 3434 0.534873 AATGCGGTTATTTGGTGGGC 59.465 50.000 0.00 0.00 0.00 5.36
2539 3435 1.326951 ATGCGGTTATTTGGTGGGCC 61.327 55.000 0.00 0.00 0.00 5.80
2540 3436 1.680989 GCGGTTATTTGGTGGGCCT 60.681 57.895 4.53 0.00 35.27 5.19
2541 3437 1.254975 GCGGTTATTTGGTGGGCCTT 61.255 55.000 4.53 0.00 35.27 4.35
2542 3438 1.262417 CGGTTATTTGGTGGGCCTTT 58.738 50.000 4.53 0.00 35.27 3.11
2543 3439 1.203758 CGGTTATTTGGTGGGCCTTTC 59.796 52.381 4.53 0.00 35.27 2.62
2544 3440 2.252714 GGTTATTTGGTGGGCCTTTCA 58.747 47.619 4.53 0.00 35.27 2.69
2545 3441 2.837591 GGTTATTTGGTGGGCCTTTCAT 59.162 45.455 4.53 0.00 35.27 2.57
2546 3442 3.369366 GGTTATTTGGTGGGCCTTTCATG 60.369 47.826 4.53 0.00 35.27 3.07
2547 3443 1.278537 ATTTGGTGGGCCTTTCATGG 58.721 50.000 4.53 0.00 35.27 3.66
2556 3452 2.368655 GCCTTTCATGGCGTGATTTT 57.631 45.000 10.74 0.00 43.74 1.82
2557 3453 1.994779 GCCTTTCATGGCGTGATTTTG 59.005 47.619 10.74 1.32 43.74 2.44
2558 3454 2.610232 GCCTTTCATGGCGTGATTTTGT 60.610 45.455 10.74 0.00 43.74 2.83
2559 3455 2.988493 CCTTTCATGGCGTGATTTTGTG 59.012 45.455 10.74 0.00 36.54 3.33
2560 3456 3.552684 CCTTTCATGGCGTGATTTTGTGT 60.553 43.478 10.74 0.00 36.54 3.72
2561 3457 3.724508 TTCATGGCGTGATTTTGTGTT 57.275 38.095 10.74 0.00 36.54 3.32
2562 3458 4.837896 TTCATGGCGTGATTTTGTGTTA 57.162 36.364 10.74 0.00 36.54 2.41
2563 3459 5.384063 TTCATGGCGTGATTTTGTGTTAT 57.616 34.783 10.74 0.00 36.54 1.89
2564 3460 4.731720 TCATGGCGTGATTTTGTGTTATG 58.268 39.130 5.03 0.00 0.00 1.90
2565 3461 2.940147 TGGCGTGATTTTGTGTTATGC 58.060 42.857 0.00 0.00 0.00 3.14
2566 3462 1.910819 GGCGTGATTTTGTGTTATGCG 59.089 47.619 0.00 0.00 0.00 4.73
2567 3463 2.580589 GCGTGATTTTGTGTTATGCGT 58.419 42.857 0.00 0.00 0.00 5.24
2568 3464 2.977169 GCGTGATTTTGTGTTATGCGTT 59.023 40.909 0.00 0.00 0.00 4.84
2569 3465 4.152526 GCGTGATTTTGTGTTATGCGTTA 58.847 39.130 0.00 0.00 0.00 3.18
2570 3466 4.613448 GCGTGATTTTGTGTTATGCGTTAA 59.387 37.500 0.00 0.00 0.00 2.01
2571 3467 5.285134 GCGTGATTTTGTGTTATGCGTTAAT 59.715 36.000 0.00 0.00 0.00 1.40
2572 3468 6.504180 GCGTGATTTTGTGTTATGCGTTAATC 60.504 38.462 0.00 0.00 0.00 1.75
2573 3469 6.521477 CGTGATTTTGTGTTATGCGTTAATCA 59.479 34.615 0.00 0.00 0.00 2.57
2574 3470 7.060059 CGTGATTTTGTGTTATGCGTTAATCAA 59.940 33.333 0.00 0.00 33.92 2.57
2575 3471 8.153411 GTGATTTTGTGTTATGCGTTAATCAAC 58.847 33.333 0.00 0.00 33.92 3.18
2576 3472 8.079203 TGATTTTGTGTTATGCGTTAATCAACT 58.921 29.630 0.00 0.00 30.40 3.16
2577 3473 7.845617 TTTTGTGTTATGCGTTAATCAACTC 57.154 32.000 0.00 0.00 32.09 3.01
2578 3474 6.546972 TTGTGTTATGCGTTAATCAACTCA 57.453 33.333 0.00 0.00 34.10 3.41
2579 3475 6.735678 TGTGTTATGCGTTAATCAACTCAT 57.264 33.333 0.00 0.00 41.66 2.90
2580 3476 7.835634 TGTGTTATGCGTTAATCAACTCATA 57.164 32.000 0.00 0.00 39.94 2.15
2581 3477 7.680982 TGTGTTATGCGTTAATCAACTCATAC 58.319 34.615 0.00 0.00 40.36 2.39
2582 3478 7.547722 TGTGTTATGCGTTAATCAACTCATACT 59.452 33.333 0.00 0.00 40.36 2.12
2583 3479 8.388103 GTGTTATGCGTTAATCAACTCATACTT 58.612 33.333 0.00 0.00 40.36 2.24
2584 3480 8.941977 TGTTATGCGTTAATCAACTCATACTTT 58.058 29.630 0.00 0.00 40.36 2.66
2585 3481 9.769093 GTTATGCGTTAATCAACTCATACTTTT 57.231 29.630 0.00 0.00 40.36 2.27
2586 3482 9.767684 TTATGCGTTAATCAACTCATACTTTTG 57.232 29.630 0.00 0.00 40.36 2.44
2587 3483 7.197071 TGCGTTAATCAACTCATACTTTTGT 57.803 32.000 0.00 0.00 32.09 2.83
2588 3484 7.075121 TGCGTTAATCAACTCATACTTTTGTG 58.925 34.615 0.00 0.00 32.09 3.33
2589 3485 6.523201 GCGTTAATCAACTCATACTTTTGTGG 59.477 38.462 0.00 0.00 32.09 4.17
2590 3486 7.021196 CGTTAATCAACTCATACTTTTGTGGG 58.979 38.462 0.00 0.00 32.09 4.61
2591 3487 7.308348 CGTTAATCAACTCATACTTTTGTGGGT 60.308 37.037 0.00 0.00 32.09 4.51
2592 3488 9.005777 GTTAATCAACTCATACTTTTGTGGGTA 57.994 33.333 0.00 0.00 0.00 3.69
2593 3489 7.687941 AATCAACTCATACTTTTGTGGGTAG 57.312 36.000 0.00 0.00 0.00 3.18
2594 3490 6.428083 TCAACTCATACTTTTGTGGGTAGA 57.572 37.500 0.00 0.00 0.00 2.59
2595 3491 7.016153 TCAACTCATACTTTTGTGGGTAGAT 57.984 36.000 0.00 0.00 0.00 1.98
2596 3492 7.458397 TCAACTCATACTTTTGTGGGTAGATT 58.542 34.615 0.00 0.00 0.00 2.40
2597 3493 7.942341 TCAACTCATACTTTTGTGGGTAGATTT 59.058 33.333 0.00 0.00 0.00 2.17
2598 3494 7.923414 ACTCATACTTTTGTGGGTAGATTTC 57.077 36.000 0.00 0.00 0.00 2.17
2599 3495 7.690256 ACTCATACTTTTGTGGGTAGATTTCT 58.310 34.615 0.00 0.00 0.00 2.52
2600 3496 8.822805 ACTCATACTTTTGTGGGTAGATTTCTA 58.177 33.333 0.00 0.00 0.00 2.10
2601 3497 9.099454 CTCATACTTTTGTGGGTAGATTTCTAC 57.901 37.037 8.88 8.88 46.09 2.59
2610 3506 2.457970 GTAGATTTCTACGTCGGTGGC 58.542 52.381 0.00 0.00 39.36 5.01
2611 3507 1.183549 AGATTTCTACGTCGGTGGCT 58.816 50.000 0.00 0.00 0.00 4.75
2612 3508 2.372264 AGATTTCTACGTCGGTGGCTA 58.628 47.619 0.00 0.00 0.00 3.93
2613 3509 2.098770 AGATTTCTACGTCGGTGGCTAC 59.901 50.000 0.00 0.00 0.00 3.58
2614 3510 0.168788 TTTCTACGTCGGTGGCTACG 59.831 55.000 0.00 0.00 44.47 3.51
2618 3514 2.869646 CGTCGGTGGCTACGTGTA 59.130 61.111 0.00 0.00 34.48 2.90
2619 3515 1.512734 CGTCGGTGGCTACGTGTAC 60.513 63.158 0.00 0.00 34.48 2.90
2620 3516 1.878775 GTCGGTGGCTACGTGTACT 59.121 57.895 0.00 0.00 0.00 2.73
2621 3517 1.086696 GTCGGTGGCTACGTGTACTA 58.913 55.000 0.00 0.00 0.00 1.82
2622 3518 1.672881 GTCGGTGGCTACGTGTACTAT 59.327 52.381 0.00 0.00 0.00 2.12
2623 3519 2.872245 GTCGGTGGCTACGTGTACTATA 59.128 50.000 0.00 0.00 0.00 1.31
2624 3520 3.499918 GTCGGTGGCTACGTGTACTATAT 59.500 47.826 0.00 0.00 0.00 0.86
2625 3521 4.023707 GTCGGTGGCTACGTGTACTATATT 60.024 45.833 0.00 0.00 0.00 1.28
2626 3522 4.023792 TCGGTGGCTACGTGTACTATATTG 60.024 45.833 0.00 0.00 0.00 1.90
2627 3523 4.553323 GGTGGCTACGTGTACTATATTGG 58.447 47.826 0.00 0.00 0.00 3.16
2628 3524 4.038402 GGTGGCTACGTGTACTATATTGGT 59.962 45.833 0.00 0.00 0.00 3.67
2629 3525 4.980434 GTGGCTACGTGTACTATATTGGTG 59.020 45.833 0.00 0.00 0.00 4.17
2630 3526 3.985925 GGCTACGTGTACTATATTGGTGC 59.014 47.826 0.00 0.00 0.00 5.01
2631 3527 4.261909 GGCTACGTGTACTATATTGGTGCT 60.262 45.833 0.00 0.00 0.00 4.40
2632 3528 5.048504 GGCTACGTGTACTATATTGGTGCTA 60.049 44.000 0.00 0.00 0.00 3.49
2633 3529 6.349944 GGCTACGTGTACTATATTGGTGCTAT 60.350 42.308 0.00 0.00 0.00 2.97
2634 3530 7.148188 GGCTACGTGTACTATATTGGTGCTATA 60.148 40.741 0.00 0.00 0.00 1.31
2635 3531 7.909121 GCTACGTGTACTATATTGGTGCTATAG 59.091 40.741 0.00 0.00 35.95 1.31
2636 3532 7.756395 ACGTGTACTATATTGGTGCTATAGT 57.244 36.000 0.84 7.50 42.34 2.12
2637 3533 8.853077 ACGTGTACTATATTGGTGCTATAGTA 57.147 34.615 0.84 5.95 40.87 1.82
2638 3534 9.458727 ACGTGTACTATATTGGTGCTATAGTAT 57.541 33.333 11.05 0.00 42.36 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.314647 GCGGTTCTTAGCGTGCACA 61.315 57.895 18.64 0.00 46.45 4.57
20 21 3.682858 TCCGATTTCTTTGCGGTTCTTAG 59.317 43.478 0.00 0.00 45.02 2.18
22 23 2.225727 GTCCGATTTCTTTGCGGTTCTT 59.774 45.455 0.00 0.00 45.02 2.52
26 27 1.296056 CCGTCCGATTTCTTTGCGGT 61.296 55.000 0.00 0.00 45.02 5.68
62 63 4.618489 GTCGACTGATTTTGATTTGGCTTG 59.382 41.667 8.70 0.00 0.00 4.01
140 141 3.992943 AAACCTGGTCCATAACATCGA 57.007 42.857 0.00 0.00 0.00 3.59
148 149 2.375174 TCTTGCACTAAACCTGGTCCAT 59.625 45.455 0.00 0.00 0.00 3.41
159 160 2.734175 CGTACGGCTGATCTTGCACTAA 60.734 50.000 7.57 0.00 0.00 2.24
167 168 1.338337 CTCCAATCGTACGGCTGATCT 59.662 52.381 16.52 0.00 0.00 2.75
184 185 2.959707 AGGATGTCTCGTATGTTCCTCC 59.040 50.000 0.00 0.00 0.00 4.30
208 212 1.292223 GCTGCGTCCCTTGTCTACA 59.708 57.895 0.00 0.00 0.00 2.74
220 224 2.742372 GTCCATGTTCGGCTGCGT 60.742 61.111 0.00 0.00 0.00 5.24
284 290 7.816640 AGTATGTATGCTTGACGTTTTCATTT 58.183 30.769 0.00 0.00 32.84 2.32
285 291 7.377766 AGTATGTATGCTTGACGTTTTCATT 57.622 32.000 0.00 0.00 32.84 2.57
340 350 2.242564 GATTTTTGCTCGACGCTTTCC 58.757 47.619 8.07 0.00 40.11 3.13
401 411 8.150945 AGCATTATATCACTGGTTCTTTATCGT 58.849 33.333 0.00 0.00 0.00 3.73
554 592 5.129980 TGTGATTGATCCATAGCTTGAGAGT 59.870 40.000 0.00 0.00 0.00 3.24
604 642 3.690628 TGCGTGATGATGTTGTGATGATT 59.309 39.130 0.00 0.00 0.00 2.57
887 928 1.043816 ATAGTGTCAGAGGCATCGGG 58.956 55.000 0.00 0.00 0.00 5.14
980 1021 0.318275 GCCGCACCGTCATTGAAAAA 60.318 50.000 0.00 0.00 0.00 1.94
982 1023 1.240641 ATGCCGCACCGTCATTGAAA 61.241 50.000 0.00 0.00 0.00 2.69
1033 1074 1.534163 CATCGGATATGCCAGCTTGTG 59.466 52.381 0.00 0.00 35.94 3.33
1034 1075 1.141657 ACATCGGATATGCCAGCTTGT 59.858 47.619 0.00 0.00 35.94 3.16
1045 1086 1.745232 GGTTTGCACCACATCGGATA 58.255 50.000 0.00 0.00 43.61 2.59
1071 1112 4.651008 GCCGTGACCGTCACCGAA 62.651 66.667 23.01 0.00 44.20 4.30
1206 1247 2.692368 ACGGGGATGATGCCACCT 60.692 61.111 5.07 0.00 0.00 4.00
1332 1381 0.682209 CCCCACCCTTCTTCATGCAG 60.682 60.000 0.00 0.00 0.00 4.41
1412 1461 3.228688 GATTTGATCGAGCCGGCGC 62.229 63.158 23.20 22.30 0.00 6.53
1584 1633 0.324943 CGAACTTCCATCCACCAGGT 59.675 55.000 0.00 0.00 35.89 4.00
1629 1678 4.080919 TCACCGGAGAATGATCACTTGAAT 60.081 41.667 9.46 0.00 0.00 2.57
1710 1764 9.405587 ACCACGACACAAATAAATTAAATTCAG 57.594 29.630 0.00 0.00 0.00 3.02
1847 2731 5.410924 TGAAACTCGGTAGAATCAGTCATG 58.589 41.667 0.00 0.00 0.00 3.07
1878 2762 7.144661 TGGCTTTCACAAGTACACAAAATATG 58.855 34.615 0.00 0.00 31.86 1.78
1888 2773 6.067263 TGTTATGTTGGCTTTCACAAGTAC 57.933 37.500 0.00 0.00 31.86 2.73
1897 2782 7.416964 TGCCTTATATTGTTATGTTGGCTTT 57.583 32.000 0.00 0.00 38.70 3.51
1900 2785 8.550376 CATTTTGCCTTATATTGTTATGTTGGC 58.450 33.333 0.00 0.00 38.42 4.52
1931 2820 3.065786 CCTTCGCATCATTATTGTGCACT 59.934 43.478 19.41 0.28 38.75 4.40
1937 2826 2.658285 GCAGCCTTCGCATCATTATTG 58.342 47.619 0.00 0.00 37.52 1.90
1949 2838 3.056328 GGGTTCACCGCAGCCTTC 61.056 66.667 0.00 0.00 36.71 3.46
1950 2839 4.660938 GGGGTTCACCGCAGCCTT 62.661 66.667 8.14 0.00 46.98 4.35
1957 2846 2.035155 GGGAAAGGGGGTTCACCG 59.965 66.667 0.00 0.00 41.60 4.94
1980 2872 8.610855 TGAAGCTGATATATAACGCGTTATAC 57.389 34.615 39.58 30.22 39.84 1.47
1997 2889 6.650427 TGTCTAAAGACTAACTGAAGCTGA 57.350 37.500 11.22 0.00 44.99 4.26
2062 2954 5.520376 AAAATTCATCCGATCACATTCCC 57.480 39.130 0.00 0.00 0.00 3.97
2147 3043 2.750888 GCGCGCCCAAACCTTCTAG 61.751 63.158 23.24 0.00 0.00 2.43
2148 3044 2.741486 AAGCGCGCCCAAACCTTCTA 62.741 55.000 30.33 0.00 0.00 2.10
2149 3045 4.643387 AGCGCGCCCAAACCTTCT 62.643 61.111 30.33 0.79 0.00 2.85
2150 3046 3.207547 AAAGCGCGCCCAAACCTTC 62.208 57.895 30.33 0.00 0.00 3.46
2151 3047 3.223589 AAAGCGCGCCCAAACCTT 61.224 55.556 30.33 11.02 0.00 3.50
2152 3048 3.977244 CAAAGCGCGCCCAAACCT 61.977 61.111 30.33 3.60 0.00 3.50
2170 3066 2.489275 AACAACACCAAGGGCGCAG 61.489 57.895 10.83 0.00 0.00 5.18
2171 3067 2.441164 AACAACACCAAGGGCGCA 60.441 55.556 10.83 0.00 0.00 6.09
2172 3068 2.027460 CAACAACACCAAGGGCGC 59.973 61.111 0.00 0.00 0.00 6.53
2173 3069 0.817634 TCTCAACAACACCAAGGGCG 60.818 55.000 0.00 0.00 0.00 6.13
2174 3070 1.620822 ATCTCAACAACACCAAGGGC 58.379 50.000 0.00 0.00 0.00 5.19
2175 3071 3.490348 AGAATCTCAACAACACCAAGGG 58.510 45.455 0.00 0.00 0.00 3.95
2176 3072 6.633500 TTTAGAATCTCAACAACACCAAGG 57.367 37.500 0.00 0.00 0.00 3.61
2240 3136 8.590204 ACTTAAAGAGGTTGGACTTTTCAAAAA 58.410 29.630 0.00 0.00 37.49 1.94
2241 3137 8.032451 CACTTAAAGAGGTTGGACTTTTCAAAA 58.968 33.333 0.00 0.00 37.49 2.44
2242 3138 7.177744 ACACTTAAAGAGGTTGGACTTTTCAAA 59.822 33.333 0.00 0.00 37.49 2.69
2243 3139 6.661805 ACACTTAAAGAGGTTGGACTTTTCAA 59.338 34.615 0.00 0.00 37.49 2.69
2244 3140 6.094881 CACACTTAAAGAGGTTGGACTTTTCA 59.905 38.462 0.00 0.00 37.49 2.69
2245 3141 6.317893 TCACACTTAAAGAGGTTGGACTTTTC 59.682 38.462 0.00 0.00 37.49 2.29
2246 3142 6.184789 TCACACTTAAAGAGGTTGGACTTTT 58.815 36.000 0.00 0.00 37.49 2.27
2247 3143 5.751586 TCACACTTAAAGAGGTTGGACTTT 58.248 37.500 0.00 0.00 39.27 2.66
2248 3144 5.367945 TCACACTTAAAGAGGTTGGACTT 57.632 39.130 0.00 0.00 0.00 3.01
2249 3145 5.071788 TGATCACACTTAAAGAGGTTGGACT 59.928 40.000 0.00 0.00 0.00 3.85
2250 3146 5.305585 TGATCACACTTAAAGAGGTTGGAC 58.694 41.667 0.00 0.00 0.00 4.02
2251 3147 5.560722 TGATCACACTTAAAGAGGTTGGA 57.439 39.130 0.00 0.00 0.00 3.53
2252 3148 6.633500 TTTGATCACACTTAAAGAGGTTGG 57.367 37.500 0.00 0.00 0.00 3.77
2352 3248 7.338196 TCGACATCCTCAATATTAAGCCAAAAA 59.662 33.333 0.00 0.00 0.00 1.94
2353 3249 6.826231 TCGACATCCTCAATATTAAGCCAAAA 59.174 34.615 0.00 0.00 0.00 2.44
2354 3250 6.353323 TCGACATCCTCAATATTAAGCCAAA 58.647 36.000 0.00 0.00 0.00 3.28
2355 3251 5.924356 TCGACATCCTCAATATTAAGCCAA 58.076 37.500 0.00 0.00 0.00 4.52
2356 3252 5.545063 TCGACATCCTCAATATTAAGCCA 57.455 39.130 0.00 0.00 0.00 4.75
2357 3253 8.723942 AATATCGACATCCTCAATATTAAGCC 57.276 34.615 0.00 0.00 0.00 4.35
2358 3254 9.593134 AGAATATCGACATCCTCAATATTAAGC 57.407 33.333 0.00 0.00 0.00 3.09
2362 3258 9.429359 GTCAAGAATATCGACATCCTCAATATT 57.571 33.333 0.00 0.00 0.00 1.28
2363 3259 8.811017 AGTCAAGAATATCGACATCCTCAATAT 58.189 33.333 0.00 0.00 31.92 1.28
2364 3260 8.183104 AGTCAAGAATATCGACATCCTCAATA 57.817 34.615 0.00 0.00 31.92 1.90
2365 3261 7.015098 AGAGTCAAGAATATCGACATCCTCAAT 59.985 37.037 0.00 0.00 31.92 2.57
2366 3262 6.322456 AGAGTCAAGAATATCGACATCCTCAA 59.678 38.462 0.00 0.00 31.92 3.02
2367 3263 5.830457 AGAGTCAAGAATATCGACATCCTCA 59.170 40.000 0.00 0.00 31.92 3.86
2368 3264 6.325919 AGAGTCAAGAATATCGACATCCTC 57.674 41.667 0.00 0.00 31.92 3.71
2369 3265 7.825331 TTAGAGTCAAGAATATCGACATCCT 57.175 36.000 0.00 0.00 31.92 3.24
2370 3266 8.138712 AGTTTAGAGTCAAGAATATCGACATCC 58.861 37.037 0.00 0.00 31.92 3.51
2371 3267 9.522804 AAGTTTAGAGTCAAGAATATCGACATC 57.477 33.333 0.00 0.00 31.92 3.06
2372 3268 9.307121 CAAGTTTAGAGTCAAGAATATCGACAT 57.693 33.333 0.00 0.00 31.92 3.06
2373 3269 7.759886 CCAAGTTTAGAGTCAAGAATATCGACA 59.240 37.037 0.00 0.00 31.92 4.35
2374 3270 7.760340 ACCAAGTTTAGAGTCAAGAATATCGAC 59.240 37.037 0.00 0.00 0.00 4.20
2375 3271 7.837863 ACCAAGTTTAGAGTCAAGAATATCGA 58.162 34.615 0.00 0.00 0.00 3.59
2376 3272 7.759886 TGACCAAGTTTAGAGTCAAGAATATCG 59.240 37.037 0.00 0.00 36.36 2.92
2377 3273 9.436957 TTGACCAAGTTTAGAGTCAAGAATATC 57.563 33.333 0.54 0.00 42.61 1.63
2378 3274 9.793259 TTTGACCAAGTTTAGAGTCAAGAATAT 57.207 29.630 4.80 0.00 46.56 1.28
2379 3275 9.273016 CTTTGACCAAGTTTAGAGTCAAGAATA 57.727 33.333 4.80 0.00 46.56 1.75
2380 3276 7.775561 ACTTTGACCAAGTTTAGAGTCAAGAAT 59.224 33.333 4.80 0.00 43.89 2.40
2381 3277 7.110155 ACTTTGACCAAGTTTAGAGTCAAGAA 58.890 34.615 4.80 0.00 43.89 2.52
2382 3278 6.650120 ACTTTGACCAAGTTTAGAGTCAAGA 58.350 36.000 4.80 0.00 43.89 3.02
2383 3279 6.927294 ACTTTGACCAAGTTTAGAGTCAAG 57.073 37.500 4.80 3.23 43.89 3.02
2409 3305 9.500785 TGTTCTTTGGAAAAGTCAAATTTCTTT 57.499 25.926 0.27 0.27 37.06 2.52
2410 3306 9.500785 TTGTTCTTTGGAAAAGTCAAATTTCTT 57.499 25.926 0.00 0.00 37.06 2.52
2411 3307 9.500785 TTTGTTCTTTGGAAAAGTCAAATTTCT 57.499 25.926 14.80 0.00 37.06 2.52
2415 3311 9.325198 GGTATTTGTTCTTTGGAAAAGTCAAAT 57.675 29.630 23.58 23.58 37.09 2.32
2416 3312 7.766738 GGGTATTTGTTCTTTGGAAAAGTCAAA 59.233 33.333 17.96 17.96 32.81 2.69
2417 3313 7.269316 GGGTATTTGTTCTTTGGAAAAGTCAA 58.731 34.615 0.05 4.93 32.81 3.18
2418 3314 6.183360 GGGGTATTTGTTCTTTGGAAAAGTCA 60.183 38.462 0.05 0.00 32.81 3.41
2419 3315 6.041637 AGGGGTATTTGTTCTTTGGAAAAGTC 59.958 38.462 0.05 0.00 32.81 3.01
2420 3316 5.903010 AGGGGTATTTGTTCTTTGGAAAAGT 59.097 36.000 0.05 0.00 32.81 2.66
2421 3317 6.419484 AGGGGTATTTGTTCTTTGGAAAAG 57.581 37.500 0.00 0.00 32.81 2.27
2422 3318 6.157123 ACAAGGGGTATTTGTTCTTTGGAAAA 59.843 34.615 0.00 0.00 35.32 2.29
2423 3319 5.663556 ACAAGGGGTATTTGTTCTTTGGAAA 59.336 36.000 0.00 0.00 35.32 3.13
2424 3320 5.212745 ACAAGGGGTATTTGTTCTTTGGAA 58.787 37.500 0.00 0.00 35.32 3.53
2425 3321 4.810345 ACAAGGGGTATTTGTTCTTTGGA 58.190 39.130 0.00 0.00 35.32 3.53
2426 3322 6.850752 ATACAAGGGGTATTTGTTCTTTGG 57.149 37.500 0.00 0.00 39.73 3.28
2437 3333 6.147437 TCAGTTCCAAAATACAAGGGGTAT 57.853 37.500 0.00 0.00 44.62 2.73
2438 3334 5.586155 TCAGTTCCAAAATACAAGGGGTA 57.414 39.130 0.00 0.00 36.16 3.69
2439 3335 4.463050 TCAGTTCCAAAATACAAGGGGT 57.537 40.909 0.00 0.00 0.00 4.95
2440 3336 4.160252 CCATCAGTTCCAAAATACAAGGGG 59.840 45.833 0.00 0.00 0.00 4.79
2441 3337 5.016173 TCCATCAGTTCCAAAATACAAGGG 58.984 41.667 0.00 0.00 0.00 3.95
2442 3338 5.711976 ACTCCATCAGTTCCAAAATACAAGG 59.288 40.000 0.00 0.00 26.56 3.61
2443 3339 6.824305 ACTCCATCAGTTCCAAAATACAAG 57.176 37.500 0.00 0.00 26.56 3.16
2444 3340 8.877864 AATACTCCATCAGTTCCAAAATACAA 57.122 30.769 0.00 0.00 36.43 2.41
2445 3341 8.877864 AAATACTCCATCAGTTCCAAAATACA 57.122 30.769 0.00 0.00 36.43 2.29
2448 3344 9.533831 AACTAAATACTCCATCAGTTCCAAAAT 57.466 29.630 0.00 0.00 36.43 1.82
2449 3345 8.934023 AACTAAATACTCCATCAGTTCCAAAA 57.066 30.769 0.00 0.00 36.43 2.44
2450 3346 8.792633 CAAACTAAATACTCCATCAGTTCCAAA 58.207 33.333 0.00 0.00 36.43 3.28
2451 3347 8.160765 TCAAACTAAATACTCCATCAGTTCCAA 58.839 33.333 0.00 0.00 36.43 3.53
2452 3348 7.606456 GTCAAACTAAATACTCCATCAGTTCCA 59.394 37.037 0.00 0.00 36.43 3.53
2453 3349 7.201530 CGTCAAACTAAATACTCCATCAGTTCC 60.202 40.741 0.00 0.00 36.43 3.62
2454 3350 7.201530 CCGTCAAACTAAATACTCCATCAGTTC 60.202 40.741 0.00 0.00 36.43 3.01
2455 3351 6.594159 CCGTCAAACTAAATACTCCATCAGTT 59.406 38.462 0.00 0.00 36.43 3.16
2456 3352 6.070995 TCCGTCAAACTAAATACTCCATCAGT 60.071 38.462 0.00 0.00 39.41 3.41
2457 3353 6.338146 TCCGTCAAACTAAATACTCCATCAG 58.662 40.000 0.00 0.00 0.00 2.90
2458 3354 6.288941 TCCGTCAAACTAAATACTCCATCA 57.711 37.500 0.00 0.00 0.00 3.07
2459 3355 6.202954 CCATCCGTCAAACTAAATACTCCATC 59.797 42.308 0.00 0.00 0.00 3.51
2460 3356 6.055588 CCATCCGTCAAACTAAATACTCCAT 58.944 40.000 0.00 0.00 0.00 3.41
2461 3357 5.424757 CCATCCGTCAAACTAAATACTCCA 58.575 41.667 0.00 0.00 0.00 3.86
2462 3358 4.814771 CCCATCCGTCAAACTAAATACTCC 59.185 45.833 0.00 0.00 0.00 3.85
2463 3359 4.814771 CCCCATCCGTCAAACTAAATACTC 59.185 45.833 0.00 0.00 0.00 2.59
2464 3360 4.384868 CCCCCATCCGTCAAACTAAATACT 60.385 45.833 0.00 0.00 0.00 2.12
2465 3361 3.881089 CCCCCATCCGTCAAACTAAATAC 59.119 47.826 0.00 0.00 0.00 1.89
2466 3362 3.781407 TCCCCCATCCGTCAAACTAAATA 59.219 43.478 0.00 0.00 0.00 1.40
2467 3363 2.578940 TCCCCCATCCGTCAAACTAAAT 59.421 45.455 0.00 0.00 0.00 1.40
2468 3364 1.986631 TCCCCCATCCGTCAAACTAAA 59.013 47.619 0.00 0.00 0.00 1.85
2469 3365 1.557832 CTCCCCCATCCGTCAAACTAA 59.442 52.381 0.00 0.00 0.00 2.24
2470 3366 1.200519 CTCCCCCATCCGTCAAACTA 58.799 55.000 0.00 0.00 0.00 2.24
2471 3367 0.546747 TCTCCCCCATCCGTCAAACT 60.547 55.000 0.00 0.00 0.00 2.66
2472 3368 0.392595 GTCTCCCCCATCCGTCAAAC 60.393 60.000 0.00 0.00 0.00 2.93
2473 3369 1.895020 CGTCTCCCCCATCCGTCAAA 61.895 60.000 0.00 0.00 0.00 2.69
2474 3370 2.355986 CGTCTCCCCCATCCGTCAA 61.356 63.158 0.00 0.00 0.00 3.18
2475 3371 2.583298 ATCGTCTCCCCCATCCGTCA 62.583 60.000 0.00 0.00 0.00 4.35
2476 3372 1.833049 ATCGTCTCCCCCATCCGTC 60.833 63.158 0.00 0.00 0.00 4.79
2477 3373 2.134287 CATCGTCTCCCCCATCCGT 61.134 63.158 0.00 0.00 0.00 4.69
2478 3374 2.737180 CATCGTCTCCCCCATCCG 59.263 66.667 0.00 0.00 0.00 4.18
2479 3375 1.459539 TCCATCGTCTCCCCCATCC 60.460 63.158 0.00 0.00 0.00 3.51
2480 3376 2.053618 CTCCATCGTCTCCCCCATC 58.946 63.158 0.00 0.00 0.00 3.51
2481 3377 2.143419 GCTCCATCGTCTCCCCCAT 61.143 63.158 0.00 0.00 0.00 4.00
2482 3378 2.764128 GCTCCATCGTCTCCCCCA 60.764 66.667 0.00 0.00 0.00 4.96
2483 3379 3.917760 CGCTCCATCGTCTCCCCC 61.918 72.222 0.00 0.00 0.00 5.40
2484 3380 3.148279 ACGCTCCATCGTCTCCCC 61.148 66.667 0.00 0.00 38.44 4.81
2485 3381 2.105128 CACGCTCCATCGTCTCCC 59.895 66.667 0.00 0.00 41.21 4.30
2486 3382 0.389948 AAACACGCTCCATCGTCTCC 60.390 55.000 0.00 0.00 41.21 3.71
2487 3383 1.429463 AAAACACGCTCCATCGTCTC 58.571 50.000 0.00 0.00 41.21 3.36
2488 3384 2.736144 TAAAACACGCTCCATCGTCT 57.264 45.000 0.00 0.00 41.21 4.18
2489 3385 2.671396 ACATAAAACACGCTCCATCGTC 59.329 45.455 0.00 0.00 41.21 4.20
2490 3386 2.695359 ACATAAAACACGCTCCATCGT 58.305 42.857 0.00 0.00 44.35 3.73
2491 3387 3.740044 AACATAAAACACGCTCCATCG 57.260 42.857 0.00 0.00 0.00 3.84
2492 3388 9.730420 ATAAATAAACATAAAACACGCTCCATC 57.270 29.630 0.00 0.00 0.00 3.51
2498 3394 9.758470 CGCATTATAAATAAACATAAAACACGC 57.242 29.630 0.00 0.00 0.00 5.34
2510 3406 9.751542 CCACCAAATAACCGCATTATAAATAAA 57.248 29.630 0.00 0.00 32.86 1.40
2511 3407 8.361139 CCCACCAAATAACCGCATTATAAATAA 58.639 33.333 0.00 0.00 32.86 1.40
2512 3408 7.524038 GCCCACCAAATAACCGCATTATAAATA 60.524 37.037 0.00 0.00 32.86 1.40
2513 3409 6.740122 GCCCACCAAATAACCGCATTATAAAT 60.740 38.462 0.00 0.00 32.86 1.40
2514 3410 5.452077 GCCCACCAAATAACCGCATTATAAA 60.452 40.000 0.00 0.00 32.86 1.40
2515 3411 4.038162 GCCCACCAAATAACCGCATTATAA 59.962 41.667 0.00 0.00 32.86 0.98
2516 3412 3.570550 GCCCACCAAATAACCGCATTATA 59.429 43.478 0.00 0.00 32.86 0.98
2517 3413 2.364002 GCCCACCAAATAACCGCATTAT 59.636 45.455 0.00 0.00 34.78 1.28
2518 3414 1.751924 GCCCACCAAATAACCGCATTA 59.248 47.619 0.00 0.00 0.00 1.90
2519 3415 0.534873 GCCCACCAAATAACCGCATT 59.465 50.000 0.00 0.00 0.00 3.56
2520 3416 1.326951 GGCCCACCAAATAACCGCAT 61.327 55.000 0.00 0.00 35.26 4.73
2521 3417 1.979693 GGCCCACCAAATAACCGCA 60.980 57.895 0.00 0.00 35.26 5.69
2522 3418 1.254975 AAGGCCCACCAAATAACCGC 61.255 55.000 0.00 0.00 39.06 5.68
2523 3419 1.203758 GAAAGGCCCACCAAATAACCG 59.796 52.381 0.00 0.00 39.06 4.44
2524 3420 2.252714 TGAAAGGCCCACCAAATAACC 58.747 47.619 0.00 0.00 39.06 2.85
2525 3421 3.369366 CCATGAAAGGCCCACCAAATAAC 60.369 47.826 0.00 0.00 39.06 1.89
2526 3422 2.836981 CCATGAAAGGCCCACCAAATAA 59.163 45.455 0.00 0.00 39.06 1.40
2527 3423 2.465813 CCATGAAAGGCCCACCAAATA 58.534 47.619 0.00 0.00 39.06 1.40
2528 3424 1.278537 CCATGAAAGGCCCACCAAAT 58.721 50.000 0.00 0.00 39.06 2.32
2529 3425 2.757313 CCATGAAAGGCCCACCAAA 58.243 52.632 0.00 0.00 39.06 3.28
2530 3426 4.537260 CCATGAAAGGCCCACCAA 57.463 55.556 0.00 0.00 39.06 3.67
2538 3434 2.988493 CACAAAATCACGCCATGAAAGG 59.012 45.455 0.00 0.00 41.93 3.11
2539 3435 3.641648 ACACAAAATCACGCCATGAAAG 58.358 40.909 0.00 0.00 41.93 2.62
2540 3436 3.724508 ACACAAAATCACGCCATGAAA 57.275 38.095 0.00 0.00 41.93 2.69
2541 3437 3.724508 AACACAAAATCACGCCATGAA 57.275 38.095 0.00 0.00 41.93 2.57
2542 3438 4.731720 CATAACACAAAATCACGCCATGA 58.268 39.130 0.00 0.00 43.13 3.07
2543 3439 3.304026 GCATAACACAAAATCACGCCATG 59.696 43.478 0.00 0.00 0.00 3.66
2544 3440 3.510719 GCATAACACAAAATCACGCCAT 58.489 40.909 0.00 0.00 0.00 4.40
2545 3441 2.666895 CGCATAACACAAAATCACGCCA 60.667 45.455 0.00 0.00 0.00 5.69
2546 3442 1.910819 CGCATAACACAAAATCACGCC 59.089 47.619 0.00 0.00 0.00 5.68
2547 3443 2.580589 ACGCATAACACAAAATCACGC 58.419 42.857 0.00 0.00 0.00 5.34
2548 3444 6.521477 TGATTAACGCATAACACAAAATCACG 59.479 34.615 0.00 0.00 29.67 4.35
2549 3445 7.789341 TGATTAACGCATAACACAAAATCAC 57.211 32.000 0.00 0.00 29.67 3.06
2550 3446 8.079203 AGTTGATTAACGCATAACACAAAATCA 58.921 29.630 0.00 0.00 41.71 2.57
2551 3447 8.447787 AGTTGATTAACGCATAACACAAAATC 57.552 30.769 0.00 0.00 41.71 2.17
2552 3448 8.079203 TGAGTTGATTAACGCATAACACAAAAT 58.921 29.630 2.64 0.00 40.86 1.82
2553 3449 7.418408 TGAGTTGATTAACGCATAACACAAAA 58.582 30.769 2.64 0.00 40.86 2.44
2554 3450 6.960468 TGAGTTGATTAACGCATAACACAAA 58.040 32.000 2.64 0.00 40.86 2.83
2555 3451 6.546972 TGAGTTGATTAACGCATAACACAA 57.453 33.333 2.64 0.00 40.86 3.33
2564 3460 6.523201 CCACAAAAGTATGAGTTGATTAACGC 59.477 38.462 0.00 0.00 41.71 4.84
2565 3461 7.021196 CCCACAAAAGTATGAGTTGATTAACG 58.979 38.462 0.00 0.00 41.71 3.18
2566 3462 7.882179 ACCCACAAAAGTATGAGTTGATTAAC 58.118 34.615 0.00 0.00 37.06 2.01
2567 3463 9.226606 CTACCCACAAAAGTATGAGTTGATTAA 57.773 33.333 0.00 0.00 0.00 1.40
2568 3464 8.598916 TCTACCCACAAAAGTATGAGTTGATTA 58.401 33.333 0.00 0.00 0.00 1.75
2569 3465 7.458397 TCTACCCACAAAAGTATGAGTTGATT 58.542 34.615 0.00 0.00 0.00 2.57
2570 3466 7.016153 TCTACCCACAAAAGTATGAGTTGAT 57.984 36.000 0.00 0.00 0.00 2.57
2571 3467 6.428083 TCTACCCACAAAAGTATGAGTTGA 57.572 37.500 0.00 0.00 0.00 3.18
2572 3468 7.687941 AATCTACCCACAAAAGTATGAGTTG 57.312 36.000 0.00 0.00 0.00 3.16
2573 3469 8.164070 AGAAATCTACCCACAAAAGTATGAGTT 58.836 33.333 0.00 0.00 0.00 3.01
2574 3470 7.690256 AGAAATCTACCCACAAAAGTATGAGT 58.310 34.615 0.00 0.00 0.00 3.41
2575 3471 9.099454 GTAGAAATCTACCCACAAAAGTATGAG 57.901 37.037 9.04 0.00 42.19 2.90
2576 3472 7.762615 CGTAGAAATCTACCCACAAAAGTATGA 59.237 37.037 13.51 0.00 44.46 2.15
2577 3473 7.548075 ACGTAGAAATCTACCCACAAAAGTATG 59.452 37.037 13.51 0.14 44.46 2.39
2578 3474 7.618137 ACGTAGAAATCTACCCACAAAAGTAT 58.382 34.615 13.51 0.00 44.46 2.12
2579 3475 6.996509 ACGTAGAAATCTACCCACAAAAGTA 58.003 36.000 13.51 0.00 44.46 2.24
2580 3476 5.861727 ACGTAGAAATCTACCCACAAAAGT 58.138 37.500 13.51 2.43 44.46 2.66
2581 3477 5.061808 CGACGTAGAAATCTACCCACAAAAG 59.938 44.000 13.51 1.90 44.46 2.27
2582 3478 4.925054 CGACGTAGAAATCTACCCACAAAA 59.075 41.667 13.51 0.00 44.46 2.44
2583 3479 4.487948 CGACGTAGAAATCTACCCACAAA 58.512 43.478 13.51 0.00 44.46 2.83
2584 3480 3.119388 CCGACGTAGAAATCTACCCACAA 60.119 47.826 13.51 0.00 44.46 3.33
2585 3481 2.424601 CCGACGTAGAAATCTACCCACA 59.575 50.000 13.51 0.00 44.46 4.17
2586 3482 2.424956 ACCGACGTAGAAATCTACCCAC 59.575 50.000 13.51 5.89 44.46 4.61
2587 3483 2.424601 CACCGACGTAGAAATCTACCCA 59.575 50.000 13.51 0.00 44.46 4.51
2588 3484 2.223665 CCACCGACGTAGAAATCTACCC 60.224 54.545 13.51 6.36 44.46 3.69
2589 3485 2.797439 GCCACCGACGTAGAAATCTACC 60.797 54.545 13.51 1.96 44.46 3.18
2590 3486 2.098770 AGCCACCGACGTAGAAATCTAC 59.901 50.000 9.99 9.99 44.00 2.59
2591 3487 2.372264 AGCCACCGACGTAGAAATCTA 58.628 47.619 0.00 0.00 0.00 1.98
2592 3488 1.183549 AGCCACCGACGTAGAAATCT 58.816 50.000 0.00 0.00 0.00 2.40
2593 3489 2.457970 GTAGCCACCGACGTAGAAATC 58.542 52.381 0.00 0.00 0.00 2.17
2594 3490 1.202222 CGTAGCCACCGACGTAGAAAT 60.202 52.381 0.00 0.00 35.70 2.17
2595 3491 0.168788 CGTAGCCACCGACGTAGAAA 59.831 55.000 0.00 0.00 35.70 2.52
2596 3492 1.796151 CGTAGCCACCGACGTAGAA 59.204 57.895 0.00 0.00 35.70 2.10
2597 3493 3.489731 CGTAGCCACCGACGTAGA 58.510 61.111 0.00 0.00 35.70 2.59
2601 3497 1.512734 GTACACGTAGCCACCGACG 60.513 63.158 0.00 0.00 44.20 5.12
2602 3498 1.086696 TAGTACACGTAGCCACCGAC 58.913 55.000 0.00 0.00 0.00 4.79
2603 3499 2.042686 ATAGTACACGTAGCCACCGA 57.957 50.000 0.00 0.00 0.00 4.69
2604 3500 4.224433 CAATATAGTACACGTAGCCACCG 58.776 47.826 0.00 0.00 0.00 4.94
2605 3501 4.038402 ACCAATATAGTACACGTAGCCACC 59.962 45.833 0.00 0.00 0.00 4.61
2606 3502 4.980434 CACCAATATAGTACACGTAGCCAC 59.020 45.833 0.00 0.00 0.00 5.01
2607 3503 4.500205 GCACCAATATAGTACACGTAGCCA 60.500 45.833 0.00 0.00 0.00 4.75
2608 3504 3.985925 GCACCAATATAGTACACGTAGCC 59.014 47.826 0.00 0.00 0.00 3.93
2609 3505 4.868067 AGCACCAATATAGTACACGTAGC 58.132 43.478 0.00 0.00 0.00 3.58
2610 3506 8.944029 ACTATAGCACCAATATAGTACACGTAG 58.056 37.037 0.00 0.00 42.12 3.51
2611 3507 8.853077 ACTATAGCACCAATATAGTACACGTA 57.147 34.615 0.00 0.00 42.12 3.57
2612 3508 7.756395 ACTATAGCACCAATATAGTACACGT 57.244 36.000 0.00 0.00 42.12 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.