Multiple sequence alignment - TraesCS4D01G219500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G219500 chr4D 100.000 2880 0 0 1 2880 375066771 375069650 0.000000e+00 5319.0
1 TraesCS4D01G219500 chr4D 85.437 515 71 4 18 530 151928253 151927741 1.520000e-147 532.0
2 TraesCS4D01G219500 chr4D 93.902 164 10 0 2424 2587 235796765 235796928 6.160000e-62 248.0
3 TraesCS4D01G219500 chr4A 94.173 1819 72 12 542 2343 89452885 89451084 0.000000e+00 2741.0
4 TraesCS4D01G219500 chr4B 95.904 1660 56 9 690 2343 462204295 462205948 0.000000e+00 2678.0
5 TraesCS4D01G219500 chr4B 94.512 164 9 0 2424 2587 330786923 330786760 1.320000e-63 254.0
6 TraesCS4D01G219500 chr4B 94.340 53 3 0 526 578 252174526 252174474 6.610000e-12 82.4
7 TraesCS4D01G219500 chr6A 86.957 529 59 8 1 526 529003379 529003900 1.150000e-163 586.0
8 TraesCS4D01G219500 chr3D 88.235 493 50 8 38 529 602098942 602098457 1.490000e-162 582.0
9 TraesCS4D01G219500 chr3D 96.271 295 11 0 2586 2880 45063225 45062931 4.310000e-133 484.0
10 TraesCS4D01G219500 chr3D 93.151 292 15 2 2589 2880 502048028 502047742 9.540000e-115 424.0
11 TraesCS4D01G219500 chr7B 87.259 518 51 14 18 530 623110330 623110837 6.920000e-161 577.0
12 TraesCS4D01G219500 chr7B 94.512 164 9 0 2424 2587 96926704 96926867 1.320000e-63 254.0
13 TraesCS4D01G219500 chr7B 93.902 164 10 0 2424 2587 393854882 393855045 6.160000e-62 248.0
14 TraesCS4D01G219500 chr1B 85.352 512 67 8 22 529 4956484 4955977 9.140000e-145 523.0
15 TraesCS4D01G219500 chr5B 85.294 510 65 5 22 524 140118330 140118836 4.250000e-143 518.0
16 TraesCS4D01G219500 chr2B 85.597 486 59 10 44 526 515073996 515074473 1.540000e-137 499.0
17 TraesCS4D01G219500 chr7D 85.294 476 56 10 58 526 28072199 28072667 2.010000e-131 479.0
18 TraesCS4D01G219500 chr7D 95.593 295 11 2 2587 2880 92234552 92234259 3.360000e-129 472.0
19 TraesCS4D01G219500 chr7D 92.177 294 22 1 2587 2880 393113869 393113577 5.740000e-112 414.0
20 TraesCS4D01G219500 chr5D 95.918 294 11 1 2587 2880 408555344 408555052 2.600000e-130 475.0
21 TraesCS4D01G219500 chr5D 92.177 294 22 1 2587 2880 545533143 545533435 5.740000e-112 414.0
22 TraesCS4D01G219500 chr5D 95.122 164 8 0 2424 2587 12608228 12608065 2.850000e-65 259.0
23 TraesCS4D01G219500 chr2D 82.927 533 82 9 1 526 326273131 326272601 3.360000e-129 472.0
24 TraesCS4D01G219500 chr2D 94.611 167 9 0 2421 2587 315124213 315124379 2.850000e-65 259.0
25 TraesCS4D01G219500 chr2D 93.902 164 10 0 2424 2587 474177296 474177459 6.160000e-62 248.0
26 TraesCS4D01G219500 chr2D 91.061 179 14 2 2410 2587 197394131 197394308 1.030000e-59 241.0
27 TraesCS4D01G219500 chr1D 94.915 295 15 0 2586 2880 414451243 414450949 2.020000e-126 462.0
28 TraesCS4D01G219500 chrUn 92.833 293 16 2 2588 2880 97174532 97174819 1.230000e-113 420.0
29 TraesCS4D01G219500 chrUn 92.491 293 21 1 2588 2880 70158593 70158302 4.440000e-113 418.0
30 TraesCS4D01G219500 chr3B 93.902 164 10 0 2424 2587 309058579 309058742 6.160000e-62 248.0
31 TraesCS4D01G219500 chr6B 94.340 53 3 0 527 579 58117930 58117878 6.610000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G219500 chr4D 375066771 375069650 2879 False 5319 5319 100.000 1 2880 1 chr4D.!!$F2 2879
1 TraesCS4D01G219500 chr4D 151927741 151928253 512 True 532 532 85.437 18 530 1 chr4D.!!$R1 512
2 TraesCS4D01G219500 chr4A 89451084 89452885 1801 True 2741 2741 94.173 542 2343 1 chr4A.!!$R1 1801
3 TraesCS4D01G219500 chr4B 462204295 462205948 1653 False 2678 2678 95.904 690 2343 1 chr4B.!!$F1 1653
4 TraesCS4D01G219500 chr6A 529003379 529003900 521 False 586 586 86.957 1 526 1 chr6A.!!$F1 525
5 TraesCS4D01G219500 chr7B 623110330 623110837 507 False 577 577 87.259 18 530 1 chr7B.!!$F3 512
6 TraesCS4D01G219500 chr1B 4955977 4956484 507 True 523 523 85.352 22 529 1 chr1B.!!$R1 507
7 TraesCS4D01G219500 chr5B 140118330 140118836 506 False 518 518 85.294 22 524 1 chr5B.!!$F1 502
8 TraesCS4D01G219500 chr2D 326272601 326273131 530 True 472 472 82.927 1 526 1 chr2D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 268 0.179124 GGAGGCGCAGAGTTAGTCAG 60.179 60.0 10.83 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2107 0.389817 TGCGCACTGAAAGCTATCGT 60.39 50.0 5.66 0.0 37.6 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 61 2.586079 CGATGCATCGCGGAAGGT 60.586 61.111 33.70 0.00 43.84 3.50
75 81 1.352622 TGTGGCTGGAGTGGAAACCT 61.353 55.000 0.00 0.00 0.00 3.50
76 82 0.606673 GTGGCTGGAGTGGAAACCTC 60.607 60.000 0.00 0.00 0.00 3.85
97 103 0.315251 GAGGTTGTTCAAGCAAGGCC 59.685 55.000 15.36 0.00 0.00 5.19
201 208 4.939399 TCGATGTCGAGTCGGGTA 57.061 55.556 13.54 0.00 44.22 3.69
231 238 0.597072 GAGGAAGTCGTCGTGGAACT 59.403 55.000 0.00 0.00 31.75 3.01
261 268 0.179124 GGAGGCGCAGAGTTAGTCAG 60.179 60.000 10.83 0.00 0.00 3.51
264 271 1.811679 GCGCAGAGTTAGTCAGGGC 60.812 63.158 0.30 5.83 42.21 5.19
267 274 1.889530 GCAGAGTTAGTCAGGGCCGT 61.890 60.000 0.00 0.00 0.00 5.68
286 293 2.481568 CGTAGTGGTGTCGAAGTAGTGA 59.518 50.000 0.00 0.00 0.00 3.41
320 327 0.231279 GATGTTGTTGACGACGCGTT 59.769 50.000 15.53 0.00 41.37 4.84
323 330 2.453638 TTGTTGACGACGCGTTGCA 61.454 52.632 26.19 20.60 41.37 4.08
401 409 4.201679 CCGGGCATGCGTAGACGA 62.202 66.667 12.44 0.00 43.02 4.20
477 491 2.593148 ACGCATCGGTGTTGCCAA 60.593 55.556 0.00 0.00 36.75 4.52
514 528 1.888436 CGAGGGACCTGCACAAGCTA 61.888 60.000 0.00 0.00 42.74 3.32
526 540 2.549926 CACAAGCTATACGCCATGTCA 58.450 47.619 0.00 0.00 37.16 3.58
530 544 4.060900 CAAGCTATACGCCATGTCAGAAT 58.939 43.478 0.00 0.00 40.39 2.40
531 545 5.221441 ACAAGCTATACGCCATGTCAGAATA 60.221 40.000 0.00 0.00 40.39 1.75
532 546 4.810790 AGCTATACGCCATGTCAGAATAC 58.189 43.478 0.00 0.00 40.39 1.89
533 547 4.524714 AGCTATACGCCATGTCAGAATACT 59.475 41.667 0.00 0.00 40.39 2.12
534 548 5.011125 AGCTATACGCCATGTCAGAATACTT 59.989 40.000 0.00 0.00 40.39 2.24
535 549 5.346281 GCTATACGCCATGTCAGAATACTTC 59.654 44.000 0.00 0.00 0.00 3.01
536 550 2.906354 ACGCCATGTCAGAATACTTCC 58.094 47.619 0.00 0.00 0.00 3.46
537 551 2.501723 ACGCCATGTCAGAATACTTCCT 59.498 45.455 0.00 0.00 0.00 3.36
538 552 3.704566 ACGCCATGTCAGAATACTTCCTA 59.295 43.478 0.00 0.00 0.00 2.94
539 553 4.161565 ACGCCATGTCAGAATACTTCCTAA 59.838 41.667 0.00 0.00 0.00 2.69
540 554 5.163301 ACGCCATGTCAGAATACTTCCTAAT 60.163 40.000 0.00 0.00 0.00 1.73
568 582 7.315247 TCTTATGTTTCCAATACAATCACGG 57.685 36.000 0.00 0.00 0.00 4.94
751 767 3.755628 GCACGTCCAGCCCTCGTA 61.756 66.667 0.00 0.00 36.05 3.43
1241 1263 9.737427 TTCTTCTAGCGATCTTACATTTTCTAG 57.263 33.333 0.00 0.00 0.00 2.43
1244 1266 9.871238 TTCTAGCGATCTTACATTTTCTAGTTT 57.129 29.630 0.00 0.00 0.00 2.66
1246 1268 7.541122 AGCGATCTTACATTTTCTAGTTTCC 57.459 36.000 0.00 0.00 0.00 3.13
1269 1292 4.953940 TTTTTACTGATGCTGGCCTTTT 57.046 36.364 3.32 0.00 0.00 2.27
1406 1429 4.321304 CCAAGTACGTCTCTTGATCACACT 60.321 45.833 25.03 4.55 43.17 3.55
1461 1484 7.333528 TGTTAATGCTTTTAGATCATCCACC 57.666 36.000 0.00 0.00 0.00 4.61
1693 1720 6.420008 CCCGATGGTAAAAGTTATAGTCTTCG 59.580 42.308 0.00 0.00 0.00 3.79
1708 1735 1.068055 TCTTCGTTTCTAGGCGTCCAC 60.068 52.381 0.00 0.00 0.00 4.02
1823 1850 4.836825 CATTAGCCTGAAGAAGAAGGTGA 58.163 43.478 0.00 0.00 35.86 4.02
1899 1926 0.730494 GCAATGGCAGCGTTGTTCTC 60.730 55.000 0.00 0.00 40.72 2.87
1982 2009 0.179215 CGTCGCTTTTGACAGGATGC 60.179 55.000 0.00 0.00 42.53 3.91
1989 2016 1.466856 TTTGACAGGATGCATGCCTC 58.533 50.000 16.68 15.19 42.53 4.70
1990 2017 0.745486 TTGACAGGATGCATGCCTCG 60.745 55.000 16.68 6.46 42.53 4.63
1991 2018 1.144716 GACAGGATGCATGCCTCGA 59.855 57.895 16.68 0.00 42.53 4.04
1992 2019 0.879400 GACAGGATGCATGCCTCGAG 60.879 60.000 16.68 12.74 42.53 4.04
1993 2020 1.145598 CAGGATGCATGCCTCGAGT 59.854 57.895 16.68 0.21 32.12 4.18
2075 2107 1.153568 CCGCTGAAGCCGAAGATGA 60.154 57.895 0.00 0.00 37.91 2.92
2112 2148 1.996191 GCACGAGGAGACAAAGTCATC 59.004 52.381 0.00 0.00 34.60 2.92
2143 2183 1.617850 TGGCCCAAAATGTAACTGCTG 59.382 47.619 0.00 0.00 0.00 4.41
2198 2238 5.163405 GGTCATGAAGAACTATGGCTCACTA 60.163 44.000 0.00 0.00 0.00 2.74
2256 2296 4.984146 AAAACTAGACCAGAAGCTCCTT 57.016 40.909 0.00 0.00 0.00 3.36
2301 2341 1.601903 TGTGAAACACAACATCGGAGC 59.398 47.619 1.99 0.00 45.67 4.70
2303 2343 0.165944 GAAACACAACATCGGAGCCG 59.834 55.000 1.74 1.74 41.35 5.52
2343 2384 5.269991 AGGCTAGGAGACACAACTGTATTA 58.730 41.667 0.00 0.00 0.00 0.98
2344 2385 5.127356 AGGCTAGGAGACACAACTGTATTAC 59.873 44.000 0.00 0.00 0.00 1.89
2345 2386 5.349809 GCTAGGAGACACAACTGTATTACC 58.650 45.833 0.00 0.00 0.00 2.85
2346 2387 4.820894 AGGAGACACAACTGTATTACCC 57.179 45.455 0.00 0.00 0.00 3.69
2347 2388 3.518303 AGGAGACACAACTGTATTACCCC 59.482 47.826 0.00 0.00 0.00 4.95
2348 2389 3.370209 GGAGACACAACTGTATTACCCCC 60.370 52.174 0.00 0.00 0.00 5.40
2349 2390 2.235402 AGACACAACTGTATTACCCCCG 59.765 50.000 0.00 0.00 0.00 5.73
2350 2391 1.339342 ACACAACTGTATTACCCCCGC 60.339 52.381 0.00 0.00 0.00 6.13
2351 2392 0.985760 ACAACTGTATTACCCCCGCA 59.014 50.000 0.00 0.00 0.00 5.69
2352 2393 1.351683 ACAACTGTATTACCCCCGCAA 59.648 47.619 0.00 0.00 0.00 4.85
2353 2394 2.224818 ACAACTGTATTACCCCCGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
2354 2395 2.820787 CAACTGTATTACCCCCGCAAAA 59.179 45.455 0.00 0.00 0.00 2.44
2355 2396 3.157750 ACTGTATTACCCCCGCAAAAA 57.842 42.857 0.00 0.00 0.00 1.94
2378 2419 7.639113 AAAAAGGAGACACAACTGTATTTCA 57.361 32.000 0.00 0.00 0.00 2.69
2379 2420 6.619801 AAAGGAGACACAACTGTATTTCAC 57.380 37.500 0.00 0.00 0.00 3.18
2380 2421 5.552870 AGGAGACACAACTGTATTTCACT 57.447 39.130 0.00 0.00 0.00 3.41
2381 2422 5.542779 AGGAGACACAACTGTATTTCACTC 58.457 41.667 0.00 0.00 0.00 3.51
2382 2423 5.070446 AGGAGACACAACTGTATTTCACTCA 59.930 40.000 0.00 0.00 0.00 3.41
2383 2424 5.934625 GGAGACACAACTGTATTTCACTCAT 59.065 40.000 0.00 0.00 0.00 2.90
2384 2425 7.039011 AGGAGACACAACTGTATTTCACTCATA 60.039 37.037 0.00 0.00 0.00 2.15
2385 2426 7.063544 GGAGACACAACTGTATTTCACTCATAC 59.936 40.741 0.00 0.00 0.00 2.39
2386 2427 7.441836 AGACACAACTGTATTTCACTCATACA 58.558 34.615 0.00 0.00 36.05 2.29
2387 2428 7.385205 AGACACAACTGTATTTCACTCATACAC 59.615 37.037 0.00 0.00 34.19 2.90
2388 2429 7.217200 ACACAACTGTATTTCACTCATACACT 58.783 34.615 0.00 0.00 34.19 3.55
2389 2430 7.715249 ACACAACTGTATTTCACTCATACACTT 59.285 33.333 0.00 0.00 34.19 3.16
2390 2431 8.223769 CACAACTGTATTTCACTCATACACTTC 58.776 37.037 0.00 0.00 34.19 3.01
2391 2432 7.116376 ACAACTGTATTTCACTCATACACTTCG 59.884 37.037 0.00 0.00 34.19 3.79
2392 2433 6.920817 ACTGTATTTCACTCATACACTTCGA 58.079 36.000 0.00 0.00 34.19 3.71
2393 2434 7.548097 ACTGTATTTCACTCATACACTTCGAT 58.452 34.615 0.00 0.00 34.19 3.59
2394 2435 8.035394 ACTGTATTTCACTCATACACTTCGATT 58.965 33.333 0.00 0.00 34.19 3.34
2395 2436 9.516314 CTGTATTTCACTCATACACTTCGATTA 57.484 33.333 0.00 0.00 34.19 1.75
2421 2462 9.783081 ATAAAATTTGAAAGTTCTTTGGCATCT 57.217 25.926 2.38 0.00 0.00 2.90
2422 2463 7.486802 AAATTTGAAAGTTCTTTGGCATCTG 57.513 32.000 2.38 0.00 0.00 2.90
2423 2464 3.648339 TGAAAGTTCTTTGGCATCTGC 57.352 42.857 2.38 0.00 41.14 4.26
2424 2465 3.225104 TGAAAGTTCTTTGGCATCTGCT 58.775 40.909 2.38 0.00 41.70 4.24
2425 2466 3.254166 TGAAAGTTCTTTGGCATCTGCTC 59.746 43.478 2.38 0.00 41.70 4.26
2426 2467 1.831580 AGTTCTTTGGCATCTGCTCC 58.168 50.000 1.70 0.00 41.70 4.70
2427 2468 0.813821 GTTCTTTGGCATCTGCTCCC 59.186 55.000 1.70 0.00 41.70 4.30
2428 2469 0.700564 TTCTTTGGCATCTGCTCCCT 59.299 50.000 1.70 0.00 41.70 4.20
2429 2470 0.254178 TCTTTGGCATCTGCTCCCTC 59.746 55.000 1.70 0.00 41.70 4.30
2430 2471 0.750911 CTTTGGCATCTGCTCCCTCC 60.751 60.000 1.70 0.00 41.70 4.30
2431 2472 1.210204 TTTGGCATCTGCTCCCTCCT 61.210 55.000 1.70 0.00 41.70 3.69
2432 2473 1.210204 TTGGCATCTGCTCCCTCCTT 61.210 55.000 1.70 0.00 41.70 3.36
2433 2474 1.148048 GGCATCTGCTCCCTCCTTC 59.852 63.158 1.70 0.00 41.70 3.46
2434 2475 1.148048 GCATCTGCTCCCTCCTTCC 59.852 63.158 0.00 0.00 38.21 3.46
2435 2476 1.835693 CATCTGCTCCCTCCTTCCC 59.164 63.158 0.00 0.00 0.00 3.97
2436 2477 1.764054 ATCTGCTCCCTCCTTCCCG 60.764 63.158 0.00 0.00 0.00 5.14
2437 2478 3.474570 CTGCTCCCTCCTTCCCGG 61.475 72.222 0.00 0.00 0.00 5.73
2438 2479 4.332543 TGCTCCCTCCTTCCCGGT 62.333 66.667 0.00 0.00 0.00 5.28
2439 2480 3.009714 GCTCCCTCCTTCCCGGTT 61.010 66.667 0.00 0.00 0.00 4.44
2440 2481 2.603652 GCTCCCTCCTTCCCGGTTT 61.604 63.158 0.00 0.00 0.00 3.27
2441 2482 1.269703 GCTCCCTCCTTCCCGGTTTA 61.270 60.000 0.00 0.00 0.00 2.01
2442 2483 1.508256 CTCCCTCCTTCCCGGTTTAT 58.492 55.000 0.00 0.00 0.00 1.40
2443 2484 2.686119 CTCCCTCCTTCCCGGTTTATA 58.314 52.381 0.00 0.00 0.00 0.98
2444 2485 2.633481 CTCCCTCCTTCCCGGTTTATAG 59.367 54.545 0.00 0.00 0.00 1.31
2445 2486 1.697982 CCCTCCTTCCCGGTTTATAGG 59.302 57.143 0.00 1.24 0.00 2.57
2454 2495 4.203654 CCCGGTTTATAGGGCTTATCTC 57.796 50.000 0.00 0.00 41.34 2.75
2455 2496 3.581332 CCCGGTTTATAGGGCTTATCTCA 59.419 47.826 0.00 0.00 41.34 3.27
2456 2497 4.041198 CCCGGTTTATAGGGCTTATCTCAA 59.959 45.833 0.00 0.00 41.34 3.02
2457 2498 5.455612 CCCGGTTTATAGGGCTTATCTCAAA 60.456 44.000 0.00 0.00 41.34 2.69
2458 2499 6.059484 CCGGTTTATAGGGCTTATCTCAAAA 58.941 40.000 0.00 0.00 0.00 2.44
2459 2500 6.544564 CCGGTTTATAGGGCTTATCTCAAAAA 59.455 38.462 0.00 0.00 0.00 1.94
2460 2501 7.230712 CCGGTTTATAGGGCTTATCTCAAAAAT 59.769 37.037 0.00 0.00 0.00 1.82
2461 2502 8.630037 CGGTTTATAGGGCTTATCTCAAAAATT 58.370 33.333 0.00 0.00 0.00 1.82
2465 2506 9.621629 TTATAGGGCTTATCTCAAAAATTTCGA 57.378 29.630 0.00 0.00 0.00 3.71
2466 2507 8.697507 ATAGGGCTTATCTCAAAAATTTCGAT 57.302 30.769 0.00 0.00 0.00 3.59
2467 2508 7.410120 AGGGCTTATCTCAAAAATTTCGATT 57.590 32.000 0.00 0.00 0.00 3.34
2468 2509 7.840931 AGGGCTTATCTCAAAAATTTCGATTT 58.159 30.769 0.00 0.00 0.00 2.17
2469 2510 7.976175 AGGGCTTATCTCAAAAATTTCGATTTC 59.024 33.333 0.00 0.00 0.00 2.17
2470 2511 7.222805 GGGCTTATCTCAAAAATTTCGATTTCC 59.777 37.037 0.00 0.00 0.00 3.13
2471 2512 7.222805 GGCTTATCTCAAAAATTTCGATTTCCC 59.777 37.037 0.00 0.00 0.00 3.97
2472 2513 7.044052 GCTTATCTCAAAAATTTCGATTTCCCG 60.044 37.037 0.00 0.00 0.00 5.14
2473 2514 5.699097 TCTCAAAAATTTCGATTTCCCGT 57.301 34.783 0.00 0.00 0.00 5.28
2474 2515 6.079424 TCTCAAAAATTTCGATTTCCCGTT 57.921 33.333 0.00 0.00 0.00 4.44
2475 2516 6.508777 TCTCAAAAATTTCGATTTCCCGTTT 58.491 32.000 0.00 0.00 0.00 3.60
2476 2517 6.981559 TCTCAAAAATTTCGATTTCCCGTTTT 59.018 30.769 0.00 0.00 0.00 2.43
2477 2518 8.136165 TCTCAAAAATTTCGATTTCCCGTTTTA 58.864 29.630 0.00 0.00 0.00 1.52
2478 2519 8.819643 TCAAAAATTTCGATTTCCCGTTTTAT 57.180 26.923 0.00 0.00 0.00 1.40
2479 2520 9.909644 TCAAAAATTTCGATTTCCCGTTTTATA 57.090 25.926 0.00 0.00 0.00 0.98
2482 2523 9.917129 AAAATTTCGATTTCCCGTTTTATAAGT 57.083 25.926 0.00 0.00 0.00 2.24
2483 2524 9.563898 AAATTTCGATTTCCCGTTTTATAAGTC 57.436 29.630 0.00 0.00 0.00 3.01
2484 2525 7.910441 TTTCGATTTCCCGTTTTATAAGTCT 57.090 32.000 0.00 0.00 0.00 3.24
2485 2526 7.529880 TTCGATTTCCCGTTTTATAAGTCTC 57.470 36.000 0.00 0.00 0.00 3.36
2486 2527 6.632909 TCGATTTCCCGTTTTATAAGTCTCA 58.367 36.000 0.00 0.00 0.00 3.27
2487 2528 7.098477 TCGATTTCCCGTTTTATAAGTCTCAA 58.902 34.615 0.00 0.00 0.00 3.02
2488 2529 7.767198 TCGATTTCCCGTTTTATAAGTCTCAAT 59.233 33.333 0.00 0.00 0.00 2.57
2489 2530 8.395633 CGATTTCCCGTTTTATAAGTCTCAATT 58.604 33.333 0.00 0.00 0.00 2.32
2491 2532 9.855021 ATTTCCCGTTTTATAAGTCTCAATTTG 57.145 29.630 0.00 0.00 0.00 2.32
2492 2533 8.624367 TTCCCGTTTTATAAGTCTCAATTTGA 57.376 30.769 0.00 0.00 0.00 2.69
2493 2534 8.801882 TCCCGTTTTATAAGTCTCAATTTGAT 57.198 30.769 0.00 0.00 0.00 2.57
2494 2535 9.238368 TCCCGTTTTATAAGTCTCAATTTGATT 57.762 29.630 0.00 0.00 0.00 2.57
2495 2536 9.289303 CCCGTTTTATAAGTCTCAATTTGATTG 57.711 33.333 0.00 0.00 41.57 2.67
2496 2537 9.840427 CCGTTTTATAAGTCTCAATTTGATTGT 57.160 29.630 0.00 0.00 41.02 2.71
2501 2542 5.728637 AAGTCTCAATTTGATTGTTCCCC 57.271 39.130 0.00 0.00 41.02 4.81
2502 2543 4.739793 AGTCTCAATTTGATTGTTCCCCA 58.260 39.130 0.00 0.00 41.02 4.96
2503 2544 5.336102 AGTCTCAATTTGATTGTTCCCCAT 58.664 37.500 0.00 0.00 41.02 4.00
2504 2545 5.420104 AGTCTCAATTTGATTGTTCCCCATC 59.580 40.000 0.00 0.00 41.02 3.51
2505 2546 5.185635 GTCTCAATTTGATTGTTCCCCATCA 59.814 40.000 0.00 0.00 41.02 3.07
2506 2547 5.185635 TCTCAATTTGATTGTTCCCCATCAC 59.814 40.000 0.00 0.00 41.02 3.06
2507 2548 4.837298 TCAATTTGATTGTTCCCCATCACA 59.163 37.500 0.00 0.00 41.02 3.58
2508 2549 5.484644 TCAATTTGATTGTTCCCCATCACAT 59.515 36.000 0.00 0.00 41.02 3.21
2509 2550 4.804868 TTTGATTGTTCCCCATCACATG 57.195 40.909 0.00 0.00 0.00 3.21
2510 2551 2.101783 TGATTGTTCCCCATCACATGC 58.898 47.619 0.00 0.00 0.00 4.06
2511 2552 2.291735 TGATTGTTCCCCATCACATGCT 60.292 45.455 0.00 0.00 0.00 3.79
2512 2553 1.838112 TTGTTCCCCATCACATGCTC 58.162 50.000 0.00 0.00 0.00 4.26
2513 2554 0.697658 TGTTCCCCATCACATGCTCA 59.302 50.000 0.00 0.00 0.00 4.26
2514 2555 1.340308 TGTTCCCCATCACATGCTCAG 60.340 52.381 0.00 0.00 0.00 3.35
2515 2556 1.065199 GTTCCCCATCACATGCTCAGA 60.065 52.381 0.00 0.00 0.00 3.27
2516 2557 1.514983 TCCCCATCACATGCTCAGAT 58.485 50.000 0.00 0.00 0.00 2.90
2517 2558 1.848388 TCCCCATCACATGCTCAGATT 59.152 47.619 0.00 0.00 0.00 2.40
2518 2559 2.242965 TCCCCATCACATGCTCAGATTT 59.757 45.455 0.00 0.00 0.00 2.17
2519 2560 3.028850 CCCCATCACATGCTCAGATTTT 58.971 45.455 0.00 0.00 0.00 1.82
2520 2561 4.079844 TCCCCATCACATGCTCAGATTTTA 60.080 41.667 0.00 0.00 0.00 1.52
2521 2562 4.646040 CCCCATCACATGCTCAGATTTTAA 59.354 41.667 0.00 0.00 0.00 1.52
2522 2563 5.127519 CCCCATCACATGCTCAGATTTTAAA 59.872 40.000 0.00 0.00 0.00 1.52
2523 2564 6.183360 CCCCATCACATGCTCAGATTTTAAAT 60.183 38.462 0.00 0.00 0.00 1.40
2524 2565 7.270047 CCCATCACATGCTCAGATTTTAAATT 58.730 34.615 0.00 0.00 0.00 1.82
2525 2566 7.223971 CCCATCACATGCTCAGATTTTAAATTG 59.776 37.037 0.00 0.00 0.00 2.32
2526 2567 7.254319 CCATCACATGCTCAGATTTTAAATTGC 60.254 37.037 0.00 0.00 0.00 3.56
2527 2568 6.689554 TCACATGCTCAGATTTTAAATTGCA 58.310 32.000 0.00 9.50 0.00 4.08
2528 2569 7.324935 TCACATGCTCAGATTTTAAATTGCAT 58.675 30.769 12.03 12.03 39.99 3.96
2529 2570 7.820386 TCACATGCTCAGATTTTAAATTGCATT 59.180 29.630 13.85 0.00 37.74 3.56
2530 2571 9.089601 CACATGCTCAGATTTTAAATTGCATTA 57.910 29.630 13.85 0.00 37.74 1.90
2531 2572 9.656040 ACATGCTCAGATTTTAAATTGCATTAA 57.344 25.926 13.85 0.00 37.74 1.40
2547 2588 7.773864 TTGCATTAATTCATTACATGCAAGG 57.226 32.000 22.14 0.00 42.77 3.61
2548 2589 7.110043 TGCATTAATTCATTACATGCAAGGA 57.890 32.000 17.66 0.00 40.05 3.36
2549 2590 7.728148 TGCATTAATTCATTACATGCAAGGAT 58.272 30.769 17.66 0.00 40.05 3.24
2550 2591 8.205512 TGCATTAATTCATTACATGCAAGGATT 58.794 29.630 17.66 0.00 40.05 3.01
2551 2592 9.695526 GCATTAATTCATTACATGCAAGGATTA 57.304 29.630 14.93 0.00 37.09 1.75
2556 2597 8.929260 ATTCATTACATGCAAGGATTATGAGA 57.071 30.769 0.00 0.00 0.00 3.27
2557 2598 8.750515 TTCATTACATGCAAGGATTATGAGAA 57.249 30.769 0.00 0.00 0.00 2.87
2558 2599 8.750515 TCATTACATGCAAGGATTATGAGAAA 57.249 30.769 0.00 0.00 0.00 2.52
2559 2600 8.623903 TCATTACATGCAAGGATTATGAGAAAC 58.376 33.333 0.00 0.00 0.00 2.78
2560 2601 8.627403 CATTACATGCAAGGATTATGAGAAACT 58.373 33.333 0.00 0.00 0.00 2.66
2561 2602 8.579850 TTACATGCAAGGATTATGAGAAACTT 57.420 30.769 0.00 0.00 0.00 2.66
2562 2603 6.860080 ACATGCAAGGATTATGAGAAACTTG 58.140 36.000 0.00 0.00 38.57 3.16
2563 2604 6.660521 ACATGCAAGGATTATGAGAAACTTGA 59.339 34.615 10.44 0.00 37.98 3.02
2564 2605 6.500684 TGCAAGGATTATGAGAAACTTGAC 57.499 37.500 10.44 4.50 37.98 3.18
2565 2606 5.415701 TGCAAGGATTATGAGAAACTTGACC 59.584 40.000 10.44 0.00 37.98 4.02
2566 2607 5.415701 GCAAGGATTATGAGAAACTTGACCA 59.584 40.000 10.44 0.00 37.98 4.02
2567 2608 6.071952 GCAAGGATTATGAGAAACTTGACCAA 60.072 38.462 10.44 0.00 37.98 3.67
2568 2609 7.363268 GCAAGGATTATGAGAAACTTGACCAAT 60.363 37.037 10.44 0.00 37.98 3.16
2569 2610 7.636150 AGGATTATGAGAAACTTGACCAATG 57.364 36.000 0.00 0.00 0.00 2.82
2570 2611 6.096001 AGGATTATGAGAAACTTGACCAATGC 59.904 38.462 0.00 0.00 0.00 3.56
2571 2612 6.127647 GGATTATGAGAAACTTGACCAATGCA 60.128 38.462 0.00 0.00 0.00 3.96
2572 2613 6.839124 TTATGAGAAACTTGACCAATGCAT 57.161 33.333 0.00 0.00 0.00 3.96
2573 2614 7.936496 TTATGAGAAACTTGACCAATGCATA 57.064 32.000 0.00 0.00 0.00 3.14
2574 2615 8.523915 TTATGAGAAACTTGACCAATGCATAT 57.476 30.769 0.00 0.00 0.00 1.78
2575 2616 9.625747 TTATGAGAAACTTGACCAATGCATATA 57.374 29.630 0.00 0.00 0.00 0.86
2576 2617 7.936496 TGAGAAACTTGACCAATGCATATAA 57.064 32.000 0.00 0.00 0.00 0.98
2577 2618 8.523915 TGAGAAACTTGACCAATGCATATAAT 57.476 30.769 0.00 0.00 0.00 1.28
2578 2619 8.970020 TGAGAAACTTGACCAATGCATATAATT 58.030 29.630 0.00 0.00 0.00 1.40
2579 2620 9.455847 GAGAAACTTGACCAATGCATATAATTC 57.544 33.333 0.00 0.00 0.00 2.17
2580 2621 8.970020 AGAAACTTGACCAATGCATATAATTCA 58.030 29.630 0.00 0.00 0.00 2.57
2581 2622 9.754382 GAAACTTGACCAATGCATATAATTCAT 57.246 29.630 0.00 0.00 0.00 2.57
2582 2623 9.537192 AAACTTGACCAATGCATATAATTCATG 57.463 29.630 0.00 4.20 0.00 3.07
2598 2639 6.964807 AATTCATGCATGGAGTAAATAGCA 57.035 33.333 25.97 0.00 36.34 3.49
2599 2640 6.964807 ATTCATGCATGGAGTAAATAGCAA 57.035 33.333 25.97 8.97 35.45 3.91
2600 2641 6.772360 TTCATGCATGGAGTAAATAGCAAA 57.228 33.333 25.97 5.73 35.45 3.68
2601 2642 6.772360 TCATGCATGGAGTAAATAGCAAAA 57.228 33.333 25.97 0.00 35.45 2.44
2602 2643 7.167924 TCATGCATGGAGTAAATAGCAAAAA 57.832 32.000 25.97 0.00 35.45 1.94
2623 2664 4.820894 AACTACCAGTTTACAGGCTAGG 57.179 45.455 0.00 0.00 34.11 3.02
2624 2665 3.105283 ACTACCAGTTTACAGGCTAGGG 58.895 50.000 0.00 0.00 0.00 3.53
2625 2666 2.040342 ACCAGTTTACAGGCTAGGGT 57.960 50.000 0.00 0.00 0.00 4.34
2626 2667 2.345560 ACCAGTTTACAGGCTAGGGTT 58.654 47.619 0.00 0.00 0.00 4.11
2627 2668 2.305052 ACCAGTTTACAGGCTAGGGTTC 59.695 50.000 0.00 0.00 0.00 3.62
2628 2669 2.355818 CCAGTTTACAGGCTAGGGTTCC 60.356 54.545 0.00 0.00 0.00 3.62
2629 2670 2.304761 CAGTTTACAGGCTAGGGTTCCA 59.695 50.000 0.00 0.00 0.00 3.53
2630 2671 2.983898 AGTTTACAGGCTAGGGTTCCAA 59.016 45.455 0.00 0.00 0.00 3.53
2631 2672 3.396611 AGTTTACAGGCTAGGGTTCCAAA 59.603 43.478 0.00 0.00 0.00 3.28
2632 2673 4.141111 AGTTTACAGGCTAGGGTTCCAAAA 60.141 41.667 0.00 0.00 0.00 2.44
2633 2674 4.456662 TTACAGGCTAGGGTTCCAAAAA 57.543 40.909 0.00 0.00 0.00 1.94
2663 2704 9.378551 ACCAACTTTTAATTTTTCTCAGAAACC 57.621 29.630 0.00 0.00 0.00 3.27
2664 2705 9.599866 CCAACTTTTAATTTTTCTCAGAAACCT 57.400 29.630 0.00 0.00 0.00 3.50
2672 2713 6.554334 TTTTTCTCAGAAACCTACCAATCG 57.446 37.500 0.00 0.00 0.00 3.34
2673 2714 3.247006 TCTCAGAAACCTACCAATCGC 57.753 47.619 0.00 0.00 0.00 4.58
2674 2715 1.927174 CTCAGAAACCTACCAATCGCG 59.073 52.381 0.00 0.00 0.00 5.87
2675 2716 1.274167 TCAGAAACCTACCAATCGCGT 59.726 47.619 5.77 0.00 0.00 6.01
2676 2717 1.393539 CAGAAACCTACCAATCGCGTG 59.606 52.381 5.77 0.00 0.00 5.34
2677 2718 0.725117 GAAACCTACCAATCGCGTGG 59.275 55.000 13.76 13.76 44.92 4.94
2691 2732 3.907927 CGTGGTTCGCTGTTTCAAA 57.092 47.368 0.00 0.00 0.00 2.69
2692 2733 2.181426 CGTGGTTCGCTGTTTCAAAA 57.819 45.000 0.00 0.00 0.00 2.44
2693 2734 2.520979 CGTGGTTCGCTGTTTCAAAAA 58.479 42.857 0.00 0.00 0.00 1.94
2707 2748 4.838046 AAAAACCCAAAACGCCCG 57.162 50.000 0.00 0.00 0.00 6.13
2708 2749 1.898885 AAAAACCCAAAACGCCCGT 59.101 47.368 0.00 0.00 0.00 5.28
2709 2750 0.460459 AAAAACCCAAAACGCCCGTG 60.460 50.000 0.00 0.00 0.00 4.94
2710 2751 1.321074 AAAACCCAAAACGCCCGTGA 61.321 50.000 0.00 0.00 0.00 4.35
2711 2752 2.007113 AAACCCAAAACGCCCGTGAC 62.007 55.000 0.00 0.00 0.00 3.67
2712 2753 2.593436 CCCAAAACGCCCGTGACT 60.593 61.111 0.00 0.00 0.00 3.41
2713 2754 1.301874 CCCAAAACGCCCGTGACTA 60.302 57.895 0.00 0.00 0.00 2.59
2714 2755 1.296056 CCCAAAACGCCCGTGACTAG 61.296 60.000 0.00 0.00 0.00 2.57
2715 2756 1.495951 CAAAACGCCCGTGACTAGC 59.504 57.895 0.00 0.00 0.00 3.42
2720 2761 4.515404 GCCCGTGACTAGCGATTT 57.485 55.556 0.00 0.00 0.00 2.17
2721 2762 3.654178 GCCCGTGACTAGCGATTTA 57.346 52.632 0.00 0.00 0.00 1.40
2722 2763 1.930567 GCCCGTGACTAGCGATTTAA 58.069 50.000 0.00 0.00 0.00 1.52
2723 2764 1.591619 GCCCGTGACTAGCGATTTAAC 59.408 52.381 0.00 0.00 0.00 2.01
2724 2765 2.199236 CCCGTGACTAGCGATTTAACC 58.801 52.381 0.00 0.00 0.00 2.85
2725 2766 1.850441 CCGTGACTAGCGATTTAACCG 59.150 52.381 0.00 0.00 0.00 4.44
2726 2767 2.523015 CGTGACTAGCGATTTAACCGT 58.477 47.619 0.00 0.00 0.00 4.83
2727 2768 2.919229 CGTGACTAGCGATTTAACCGTT 59.081 45.455 0.00 0.00 0.00 4.44
2728 2769 3.365820 CGTGACTAGCGATTTAACCGTTT 59.634 43.478 0.00 0.00 0.00 3.60
2729 2770 4.143263 CGTGACTAGCGATTTAACCGTTTT 60.143 41.667 0.00 0.00 0.00 2.43
2730 2771 5.613142 CGTGACTAGCGATTTAACCGTTTTT 60.613 40.000 0.00 0.00 0.00 1.94
2731 2772 5.787062 GTGACTAGCGATTTAACCGTTTTTC 59.213 40.000 0.00 0.00 0.00 2.29
2732 2773 5.697633 TGACTAGCGATTTAACCGTTTTTCT 59.302 36.000 0.00 0.00 0.00 2.52
2733 2774 6.867816 TGACTAGCGATTTAACCGTTTTTCTA 59.132 34.615 0.00 0.00 0.00 2.10
2734 2775 7.384660 TGACTAGCGATTTAACCGTTTTTCTAA 59.615 33.333 0.00 0.00 0.00 2.10
2735 2776 7.513132 ACTAGCGATTTAACCGTTTTTCTAAC 58.487 34.615 0.00 0.00 0.00 2.34
2736 2777 5.692814 AGCGATTTAACCGTTTTTCTAACC 58.307 37.500 0.00 0.00 0.00 2.85
2737 2778 4.550744 GCGATTTAACCGTTTTTCTAACCG 59.449 41.667 0.00 0.00 0.00 4.44
2738 2779 5.678921 CGATTTAACCGTTTTTCTAACCGT 58.321 37.500 0.00 0.00 0.00 4.83
2739 2780 5.785112 CGATTTAACCGTTTTTCTAACCGTC 59.215 40.000 0.00 0.00 0.00 4.79
2740 2781 6.346838 CGATTTAACCGTTTTTCTAACCGTCT 60.347 38.462 0.00 0.00 0.00 4.18
2741 2782 5.655893 TTAACCGTTTTTCTAACCGTCTG 57.344 39.130 0.00 0.00 0.00 3.51
2742 2783 2.486918 ACCGTTTTTCTAACCGTCTGG 58.513 47.619 0.00 0.00 42.84 3.86
2743 2784 2.102925 ACCGTTTTTCTAACCGTCTGGA 59.897 45.455 0.00 0.00 39.21 3.86
2744 2785 2.477754 CCGTTTTTCTAACCGTCTGGAC 59.522 50.000 0.00 0.00 39.21 4.02
2745 2786 2.477754 CGTTTTTCTAACCGTCTGGACC 59.522 50.000 0.00 0.00 39.21 4.46
2746 2787 2.810274 GTTTTTCTAACCGTCTGGACCC 59.190 50.000 0.00 0.00 39.21 4.46
2747 2788 1.719529 TTTCTAACCGTCTGGACCCA 58.280 50.000 0.00 0.00 39.21 4.51
2748 2789 0.971386 TTCTAACCGTCTGGACCCAC 59.029 55.000 0.00 0.00 39.21 4.61
2749 2790 0.178955 TCTAACCGTCTGGACCCACA 60.179 55.000 0.00 0.00 39.21 4.17
2750 2791 0.902531 CTAACCGTCTGGACCCACAT 59.097 55.000 0.00 0.00 39.21 3.21
2751 2792 0.611200 TAACCGTCTGGACCCACATG 59.389 55.000 0.00 0.00 39.21 3.21
2752 2793 1.415672 AACCGTCTGGACCCACATGT 61.416 55.000 0.00 0.00 39.21 3.21
2753 2794 1.079127 CCGTCTGGACCCACATGTC 60.079 63.158 0.00 0.00 37.49 3.06
2754 2795 1.671166 CGTCTGGACCCACATGTCA 59.329 57.895 0.00 0.00 36.97 3.58
2755 2796 0.390340 CGTCTGGACCCACATGTCAG 60.390 60.000 0.00 0.00 36.97 3.51
2756 2797 0.036010 GTCTGGACCCACATGTCAGG 60.036 60.000 9.48 9.48 36.97 3.86
2757 2798 1.377725 CTGGACCCACATGTCAGGC 60.378 63.158 10.76 0.30 36.97 4.85
2758 2799 2.044946 GGACCCACATGTCAGGCC 60.045 66.667 10.76 6.09 36.97 5.19
2759 2800 2.756400 GACCCACATGTCAGGCCA 59.244 61.111 5.01 0.00 35.29 5.36
2760 2801 1.675641 GACCCACATGTCAGGCCAC 60.676 63.158 5.01 0.00 35.29 5.01
2761 2802 2.361610 CCCACATGTCAGGCCACC 60.362 66.667 5.01 0.00 0.00 4.61
2762 2803 2.759114 CCACATGTCAGGCCACCT 59.241 61.111 5.01 0.00 0.00 4.00
2832 2873 4.078516 GGTCCGGTCGGAACCAGG 62.079 72.222 15.91 0.87 45.91 4.45
2833 2874 4.078516 GTCCGGTCGGAACCAGGG 62.079 72.222 14.07 0.00 46.86 4.45
2834 2875 4.626402 TCCGGTCGGAACCAGGGT 62.626 66.667 9.90 0.00 46.86 4.34
2835 2876 2.681064 CCGGTCGGAACCAGGGTA 60.681 66.667 2.83 0.00 46.86 3.69
2836 2877 2.285024 CCGGTCGGAACCAGGGTAA 61.285 63.158 2.83 0.00 46.86 2.85
2837 2878 1.672898 CGGTCGGAACCAGGGTAAA 59.327 57.895 0.00 0.00 46.86 2.01
2838 2879 0.251073 CGGTCGGAACCAGGGTAAAT 59.749 55.000 0.00 0.00 46.86 1.40
2839 2880 1.481772 CGGTCGGAACCAGGGTAAATA 59.518 52.381 0.00 0.00 46.86 1.40
2840 2881 2.739609 CGGTCGGAACCAGGGTAAATAC 60.740 54.545 0.00 0.00 46.86 1.89
2841 2882 2.420547 GGTCGGAACCAGGGTAAATACC 60.421 54.545 0.73 0.73 45.68 2.73
2850 2891 3.507675 GGTAAATACCCCACCCTGC 57.492 57.895 0.00 0.00 40.53 4.85
2851 2892 0.924090 GGTAAATACCCCACCCTGCT 59.076 55.000 0.00 0.00 40.53 4.24
2852 2893 1.133884 GGTAAATACCCCACCCTGCTC 60.134 57.143 0.00 0.00 40.53 4.26
2853 2894 1.133884 GTAAATACCCCACCCTGCTCC 60.134 57.143 0.00 0.00 0.00 4.70
2854 2895 1.580994 AAATACCCCACCCTGCTCCC 61.581 60.000 0.00 0.00 0.00 4.30
2855 2896 2.798760 AATACCCCACCCTGCTCCCA 62.799 60.000 0.00 0.00 0.00 4.37
2858 2899 3.721706 CCCACCCTGCTCCCACTC 61.722 72.222 0.00 0.00 0.00 3.51
2859 2900 2.930019 CCACCCTGCTCCCACTCA 60.930 66.667 0.00 0.00 0.00 3.41
2860 2901 2.348998 CACCCTGCTCCCACTCAC 59.651 66.667 0.00 0.00 0.00 3.51
2861 2902 2.205462 ACCCTGCTCCCACTCACT 59.795 61.111 0.00 0.00 0.00 3.41
2862 2903 2.219875 ACCCTGCTCCCACTCACTG 61.220 63.158 0.00 0.00 0.00 3.66
2863 2904 2.046507 CCTGCTCCCACTCACTGC 60.047 66.667 0.00 0.00 0.00 4.40
2864 2905 2.591072 CCTGCTCCCACTCACTGCT 61.591 63.158 0.00 0.00 0.00 4.24
2865 2906 1.079266 CTGCTCCCACTCACTGCTC 60.079 63.158 0.00 0.00 0.00 4.26
2866 2907 2.125753 GCTCCCACTCACTGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
2867 2908 2.125753 CTCCCACTCACTGCTCGC 60.126 66.667 0.00 0.00 0.00 5.03
2868 2909 2.601666 TCCCACTCACTGCTCGCT 60.602 61.111 0.00 0.00 0.00 4.93
2869 2910 2.125753 CCCACTCACTGCTCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
2870 2911 2.653115 CCACTCACTGCTCGCTCA 59.347 61.111 0.00 0.00 0.00 4.26
2871 2912 1.735920 CCACTCACTGCTCGCTCAC 60.736 63.158 0.00 0.00 0.00 3.51
2872 2913 1.288439 CACTCACTGCTCGCTCACT 59.712 57.895 0.00 0.00 0.00 3.41
2873 2914 0.732196 CACTCACTGCTCGCTCACTC 60.732 60.000 0.00 0.00 0.00 3.51
2874 2915 1.153862 CTCACTGCTCGCTCACTCC 60.154 63.158 0.00 0.00 0.00 3.85
2875 2916 2.125753 CACTGCTCGCTCACTCCC 60.126 66.667 0.00 0.00 0.00 4.30
2876 2917 3.386237 ACTGCTCGCTCACTCCCC 61.386 66.667 0.00 0.00 0.00 4.81
2877 2918 3.073735 CTGCTCGCTCACTCCCCT 61.074 66.667 0.00 0.00 0.00 4.79
2878 2919 3.368190 CTGCTCGCTCACTCCCCTG 62.368 68.421 0.00 0.00 0.00 4.45
2879 2920 4.828925 GCTCGCTCACTCCCCTGC 62.829 72.222 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.395312 ACCGTTACAACTGTGGGGAG 59.605 55.000 0.00 0.00 0.00 4.30
20 21 0.393820 GACCGTTACAACTGTGGGGA 59.606 55.000 0.00 0.00 0.00 4.81
55 60 1.172812 GGTTTCCACTCCAGCCACAC 61.173 60.000 0.00 0.00 0.00 3.82
56 61 1.150536 GGTTTCCACTCCAGCCACA 59.849 57.895 0.00 0.00 0.00 4.17
75 81 1.593196 CTTGCTTGAACAACCTCGGA 58.407 50.000 0.00 0.00 0.00 4.55
76 82 0.593128 CCTTGCTTGAACAACCTCGG 59.407 55.000 0.00 0.00 0.00 4.63
85 91 3.981308 GCTACGGCCTTGCTTGAA 58.019 55.556 0.00 0.00 0.00 2.69
97 103 1.512156 AAACGGCACAAAGGGCTACG 61.512 55.000 0.00 0.00 0.00 3.51
200 207 2.036098 TTCCTCGACACCGGCCTA 59.964 61.111 0.00 0.00 36.24 3.93
201 208 3.382832 CTTCCTCGACACCGGCCT 61.383 66.667 0.00 0.00 36.24 5.19
250 257 1.005687 ACTACGGCCCTGACTAACTCT 59.994 52.381 0.00 0.00 0.00 3.24
261 268 2.830704 CTTCGACACCACTACGGCCC 62.831 65.000 0.00 0.00 39.03 5.80
264 271 1.808945 ACTACTTCGACACCACTACGG 59.191 52.381 0.00 0.00 42.50 4.02
267 274 3.119602 GCATCACTACTTCGACACCACTA 60.120 47.826 0.00 0.00 0.00 2.74
286 293 1.524621 CATCTTCTTCCCGGCGCAT 60.525 57.895 10.83 0.00 0.00 4.73
320 327 2.265182 GCTTGGTAAACCCGCTGCA 61.265 57.895 0.00 0.00 35.15 4.41
323 330 2.035155 GGGCTTGGTAAACCCGCT 59.965 61.111 9.49 0.00 32.92 5.52
366 374 2.629002 GTGCCAGAAACACCGATGT 58.371 52.632 0.00 0.00 42.46 3.06
477 491 3.387091 TCTACGCATGCCCGGTGT 61.387 61.111 13.15 6.24 0.00 4.16
514 528 4.345257 AGGAAGTATTCTGACATGGCGTAT 59.655 41.667 0.00 0.00 46.56 3.06
550 564 3.190535 AGTGCCGTGATTGTATTGGAAAC 59.809 43.478 0.00 0.00 0.00 2.78
554 568 2.355197 TGAGTGCCGTGATTGTATTGG 58.645 47.619 0.00 0.00 0.00 3.16
555 569 3.188254 TGTTGAGTGCCGTGATTGTATTG 59.812 43.478 0.00 0.00 0.00 1.90
751 767 9.981114 AAAACGAACTTCTTTCATATTTGGAAT 57.019 25.926 0.00 0.00 33.24 3.01
780 796 5.817816 GCACAGGCTGTTAGTTCAGTTATAT 59.182 40.000 19.43 0.00 37.70 0.86
950 966 2.638480 TGAGGTGTTGGAGTCTTTGG 57.362 50.000 0.00 0.00 0.00 3.28
955 971 2.104963 AGTTCCTTGAGGTGTTGGAGTC 59.895 50.000 0.00 0.00 36.34 3.36
1268 1291 2.688507 CTCTACCTGCGCAGAGAAAAA 58.311 47.619 38.06 16.49 40.68 1.94
1269 1292 1.673033 GCTCTACCTGCGCAGAGAAAA 60.673 52.381 38.06 17.53 40.68 2.29
1406 1429 9.829507 GGAGAAGAAATTAAGAGATCAGATCAA 57.170 33.333 13.14 0.00 0.00 2.57
1461 1484 3.992643 TGCCCAAAACATTGACATTGAG 58.007 40.909 4.40 0.00 0.00 3.02
1693 1720 2.674796 ATCAGTGGACGCCTAGAAAC 57.325 50.000 0.00 0.00 0.00 2.78
1708 1735 5.645497 CCTTTCCTCTACAACTCCAAATCAG 59.355 44.000 0.00 0.00 0.00 2.90
1823 1850 2.125106 GGCGGCGATCTCTTTGGT 60.125 61.111 12.98 0.00 0.00 3.67
1888 1915 1.300697 GACCGTGGAGAACAACGCT 60.301 57.895 0.00 0.00 0.00 5.07
1899 1926 0.458543 CGACAATCTCCTGACCGTGG 60.459 60.000 0.00 0.00 0.00 4.94
1982 2009 2.166459 TCTAGTCCAAACTCGAGGCATG 59.834 50.000 18.41 11.92 36.92 4.06
1989 2016 3.917329 TGTCACTCTAGTCCAAACTCG 57.083 47.619 0.00 0.00 36.92 4.18
1990 2017 3.982058 CGTTGTCACTCTAGTCCAAACTC 59.018 47.826 0.00 0.00 36.92 3.01
1991 2018 3.635373 TCGTTGTCACTCTAGTCCAAACT 59.365 43.478 0.00 0.00 39.66 2.66
1992 2019 3.734735 GTCGTTGTCACTCTAGTCCAAAC 59.265 47.826 0.00 0.00 0.00 2.93
1993 2020 3.382227 TGTCGTTGTCACTCTAGTCCAAA 59.618 43.478 0.00 0.00 0.00 3.28
2035 2067 4.346418 GGCCTATCATCCGATCCATAAGAT 59.654 45.833 0.00 0.00 38.17 2.40
2075 2107 0.389817 TGCGCACTGAAAGCTATCGT 60.390 50.000 5.66 0.00 37.60 3.73
2112 2148 2.503846 TTTGGGCCAGATGCAGAGGG 62.504 60.000 6.23 0.00 43.89 4.30
2143 2183 7.546667 TCCGATACTAATTTTGAACCTACACAC 59.453 37.037 0.00 0.00 0.00 3.82
2198 2238 5.723887 ACAGATGTCTTCCCTTCTCTTGTAT 59.276 40.000 0.00 0.00 0.00 2.29
2286 2326 1.671054 CCGGCTCCGATGTTGTGTT 60.671 57.895 10.28 0.00 42.83 3.32
2293 2333 0.391130 TTCAAGTTCCGGCTCCGATG 60.391 55.000 10.28 1.50 42.83 3.84
2294 2334 0.391263 GTTCAAGTTCCGGCTCCGAT 60.391 55.000 10.28 0.00 42.83 4.18
2295 2335 1.005394 GTTCAAGTTCCGGCTCCGA 60.005 57.895 10.28 0.00 42.83 4.55
2296 2336 1.301401 TGTTCAAGTTCCGGCTCCG 60.301 57.895 0.00 0.48 39.44 4.63
2297 2337 1.566018 CGTGTTCAAGTTCCGGCTCC 61.566 60.000 0.00 0.00 0.00 4.70
2298 2338 1.860078 CGTGTTCAAGTTCCGGCTC 59.140 57.895 0.00 0.00 0.00 4.70
2299 2339 2.251642 GCGTGTTCAAGTTCCGGCT 61.252 57.895 0.00 0.00 0.00 5.52
2300 2340 1.852067 ATGCGTGTTCAAGTTCCGGC 61.852 55.000 0.00 0.00 0.00 6.13
2301 2341 1.393539 CTATGCGTGTTCAAGTTCCGG 59.606 52.381 0.00 0.00 0.00 5.14
2303 2343 1.130561 GCCTATGCGTGTTCAAGTTCC 59.869 52.381 0.00 0.00 0.00 3.62
2354 2395 7.339466 AGTGAAATACAGTTGTGTCTCCTTTTT 59.661 33.333 0.00 0.00 38.19 1.94
2355 2396 6.828785 AGTGAAATACAGTTGTGTCTCCTTTT 59.171 34.615 0.00 0.00 38.19 2.27
2356 2397 6.357367 AGTGAAATACAGTTGTGTCTCCTTT 58.643 36.000 0.00 0.00 38.19 3.11
2357 2398 5.930135 AGTGAAATACAGTTGTGTCTCCTT 58.070 37.500 0.00 0.00 38.19 3.36
2358 2399 5.070446 TGAGTGAAATACAGTTGTGTCTCCT 59.930 40.000 0.00 0.00 38.19 3.69
2359 2400 5.297547 TGAGTGAAATACAGTTGTGTCTCC 58.702 41.667 0.00 0.00 38.19 3.71
2360 2401 7.598869 TGTATGAGTGAAATACAGTTGTGTCTC 59.401 37.037 0.00 0.00 35.97 3.36
2361 2402 7.385205 GTGTATGAGTGAAATACAGTTGTGTCT 59.615 37.037 0.00 0.00 40.30 3.41
2362 2403 7.385205 AGTGTATGAGTGAAATACAGTTGTGTC 59.615 37.037 0.00 0.00 39.89 3.67
2363 2404 7.217200 AGTGTATGAGTGAAATACAGTTGTGT 58.783 34.615 0.00 0.00 39.89 3.72
2364 2405 7.658179 AGTGTATGAGTGAAATACAGTTGTG 57.342 36.000 0.00 0.00 39.89 3.33
2365 2406 7.116376 CGAAGTGTATGAGTGAAATACAGTTGT 59.884 37.037 17.10 0.14 46.64 3.32
2366 2407 7.328493 TCGAAGTGTATGAGTGAAATACAGTTG 59.672 37.037 17.10 11.38 46.64 3.16
2368 2409 6.920817 TCGAAGTGTATGAGTGAAATACAGT 58.079 36.000 0.00 0.00 43.03 3.55
2369 2410 7.993821 ATCGAAGTGTATGAGTGAAATACAG 57.006 36.000 0.00 0.00 40.30 2.74
2395 2436 9.783081 AGATGCCAAAGAACTTTCAAATTTTAT 57.217 25.926 0.00 0.00 0.00 1.40
2396 2437 9.044150 CAGATGCCAAAGAACTTTCAAATTTTA 57.956 29.630 0.00 0.00 0.00 1.52
2397 2438 7.467675 GCAGATGCCAAAGAACTTTCAAATTTT 60.468 33.333 0.00 0.00 34.31 1.82
2398 2439 6.017687 GCAGATGCCAAAGAACTTTCAAATTT 60.018 34.615 0.00 0.00 34.31 1.82
2399 2440 5.467735 GCAGATGCCAAAGAACTTTCAAATT 59.532 36.000 0.00 0.00 34.31 1.82
2400 2441 4.992951 GCAGATGCCAAAGAACTTTCAAAT 59.007 37.500 0.00 0.00 34.31 2.32
2401 2442 4.099881 AGCAGATGCCAAAGAACTTTCAAA 59.900 37.500 0.14 0.00 43.38 2.69
2402 2443 3.638160 AGCAGATGCCAAAGAACTTTCAA 59.362 39.130 0.14 0.00 43.38 2.69
2403 2444 3.225104 AGCAGATGCCAAAGAACTTTCA 58.775 40.909 0.14 0.00 43.38 2.69
2404 2445 3.366781 GGAGCAGATGCCAAAGAACTTTC 60.367 47.826 0.14 0.00 43.38 2.62
2405 2446 2.560105 GGAGCAGATGCCAAAGAACTTT 59.440 45.455 0.14 0.00 43.38 2.66
2406 2447 2.165998 GGAGCAGATGCCAAAGAACTT 58.834 47.619 0.14 0.00 43.38 2.66
2407 2448 1.615384 GGGAGCAGATGCCAAAGAACT 60.615 52.381 0.14 0.00 43.38 3.01
2408 2449 0.813821 GGGAGCAGATGCCAAAGAAC 59.186 55.000 0.14 0.00 43.38 3.01
2409 2450 0.700564 AGGGAGCAGATGCCAAAGAA 59.299 50.000 0.00 0.00 43.31 2.52
2410 2451 0.254178 GAGGGAGCAGATGCCAAAGA 59.746 55.000 0.00 0.00 43.31 2.52
2411 2452 0.750911 GGAGGGAGCAGATGCCAAAG 60.751 60.000 0.00 0.00 43.31 2.77
2412 2453 1.210204 AGGAGGGAGCAGATGCCAAA 61.210 55.000 0.00 0.00 43.31 3.28
2413 2454 1.210204 AAGGAGGGAGCAGATGCCAA 61.210 55.000 0.00 0.00 43.31 4.52
2414 2455 1.617536 AAGGAGGGAGCAGATGCCA 60.618 57.895 0.00 0.00 43.31 4.92
2415 2456 1.148048 GAAGGAGGGAGCAGATGCC 59.852 63.158 0.14 0.00 43.38 4.40
2416 2457 1.148048 GGAAGGAGGGAGCAGATGC 59.852 63.158 0.00 0.00 42.49 3.91
2417 2458 1.835693 GGGAAGGAGGGAGCAGATG 59.164 63.158 0.00 0.00 0.00 2.90
2418 2459 1.764054 CGGGAAGGAGGGAGCAGAT 60.764 63.158 0.00 0.00 0.00 2.90
2419 2460 2.364317 CGGGAAGGAGGGAGCAGA 60.364 66.667 0.00 0.00 0.00 4.26
2420 2461 3.474570 CCGGGAAGGAGGGAGCAG 61.475 72.222 0.00 0.00 45.00 4.24
2421 2462 3.864983 AACCGGGAAGGAGGGAGCA 62.865 63.158 6.32 0.00 45.00 4.26
2422 2463 1.269703 TAAACCGGGAAGGAGGGAGC 61.270 60.000 6.32 0.00 45.00 4.70
2423 2464 1.508256 ATAAACCGGGAAGGAGGGAG 58.492 55.000 6.32 0.00 45.00 4.30
2424 2465 2.686119 CTATAAACCGGGAAGGAGGGA 58.314 52.381 6.32 0.00 45.00 4.20
2425 2466 1.697982 CCTATAAACCGGGAAGGAGGG 59.302 57.143 6.32 0.00 45.00 4.30
2426 2467 1.697982 CCCTATAAACCGGGAAGGAGG 59.302 57.143 6.32 6.70 43.44 4.30
2427 2468 1.071857 GCCCTATAAACCGGGAAGGAG 59.928 57.143 6.32 0.00 43.44 3.69
2428 2469 1.134228 GCCCTATAAACCGGGAAGGA 58.866 55.000 6.32 0.00 43.44 3.36
2429 2470 1.137697 AGCCCTATAAACCGGGAAGG 58.862 55.000 6.32 4.57 43.44 3.46
2430 2471 4.286291 AGATAAGCCCTATAAACCGGGAAG 59.714 45.833 6.32 0.00 43.44 3.46
2431 2472 4.237018 AGATAAGCCCTATAAACCGGGAA 58.763 43.478 6.32 0.00 43.44 3.97
2432 2473 3.836562 GAGATAAGCCCTATAAACCGGGA 59.163 47.826 6.32 0.00 43.44 5.14
2433 2474 3.581332 TGAGATAAGCCCTATAAACCGGG 59.419 47.826 6.32 0.00 43.60 5.73
2434 2475 4.884668 TGAGATAAGCCCTATAAACCGG 57.115 45.455 0.00 0.00 0.00 5.28
2435 2476 7.562454 TTTTTGAGATAAGCCCTATAAACCG 57.438 36.000 0.00 0.00 0.00 4.44
2439 2480 9.621629 TCGAAATTTTTGAGATAAGCCCTATAA 57.378 29.630 0.00 0.00 0.00 0.98
2440 2481 9.793259 ATCGAAATTTTTGAGATAAGCCCTATA 57.207 29.630 5.37 0.00 0.00 1.31
2441 2482 8.697507 ATCGAAATTTTTGAGATAAGCCCTAT 57.302 30.769 5.37 0.00 0.00 2.57
2442 2483 8.519799 AATCGAAATTTTTGAGATAAGCCCTA 57.480 30.769 5.37 0.00 0.00 3.53
2443 2484 7.410120 AATCGAAATTTTTGAGATAAGCCCT 57.590 32.000 5.37 0.00 0.00 5.19
2444 2485 7.222805 GGAAATCGAAATTTTTGAGATAAGCCC 59.777 37.037 5.37 0.00 35.21 5.19
2445 2486 7.222805 GGGAAATCGAAATTTTTGAGATAAGCC 59.777 37.037 5.37 1.77 35.21 4.35
2446 2487 7.044052 CGGGAAATCGAAATTTTTGAGATAAGC 60.044 37.037 5.37 0.00 35.21 3.09
2447 2488 7.968405 ACGGGAAATCGAAATTTTTGAGATAAG 59.032 33.333 5.37 0.00 35.21 1.73
2448 2489 7.822658 ACGGGAAATCGAAATTTTTGAGATAA 58.177 30.769 5.37 0.00 35.21 1.75
2449 2490 7.385778 ACGGGAAATCGAAATTTTTGAGATA 57.614 32.000 5.37 0.00 35.21 1.98
2450 2491 6.267496 ACGGGAAATCGAAATTTTTGAGAT 57.733 33.333 5.37 0.00 35.21 2.75
2451 2492 5.699097 ACGGGAAATCGAAATTTTTGAGA 57.301 34.783 5.37 0.00 35.21 3.27
2452 2493 6.763303 AAACGGGAAATCGAAATTTTTGAG 57.237 33.333 5.37 0.00 35.21 3.02
2453 2494 8.819643 ATAAAACGGGAAATCGAAATTTTTGA 57.180 26.923 1.58 1.58 35.21 2.69
2456 2497 9.917129 ACTTATAAAACGGGAAATCGAAATTTT 57.083 25.926 0.00 0.00 35.21 1.82
2457 2498 9.563898 GACTTATAAAACGGGAAATCGAAATTT 57.436 29.630 0.00 0.00 37.80 1.82
2458 2499 8.953313 AGACTTATAAAACGGGAAATCGAAATT 58.047 29.630 0.00 0.00 0.00 1.82
2459 2500 8.502105 AGACTTATAAAACGGGAAATCGAAAT 57.498 30.769 0.00 0.00 0.00 2.17
2460 2501 7.603404 TGAGACTTATAAAACGGGAAATCGAAA 59.397 33.333 0.00 0.00 0.00 3.46
2461 2502 7.098477 TGAGACTTATAAAACGGGAAATCGAA 58.902 34.615 0.00 0.00 0.00 3.71
2462 2503 6.632909 TGAGACTTATAAAACGGGAAATCGA 58.367 36.000 0.00 0.00 0.00 3.59
2463 2504 6.897259 TGAGACTTATAAAACGGGAAATCG 57.103 37.500 0.00 0.00 0.00 3.34
2465 2506 9.855021 CAAATTGAGACTTATAAAACGGGAAAT 57.145 29.630 0.00 0.00 0.00 2.17
2466 2507 9.069082 TCAAATTGAGACTTATAAAACGGGAAA 57.931 29.630 0.00 0.00 0.00 3.13
2467 2508 8.624367 TCAAATTGAGACTTATAAAACGGGAA 57.376 30.769 0.00 0.00 0.00 3.97
2468 2509 8.801882 ATCAAATTGAGACTTATAAAACGGGA 57.198 30.769 1.10 0.00 0.00 5.14
2469 2510 9.289303 CAATCAAATTGAGACTTATAAAACGGG 57.711 33.333 1.10 0.00 42.83 5.28
2470 2511 9.840427 ACAATCAAATTGAGACTTATAAAACGG 57.160 29.630 1.10 0.00 42.83 4.44
2475 2516 8.966868 GGGGAACAATCAAATTGAGACTTATAA 58.033 33.333 1.10 0.00 42.83 0.98
2476 2517 8.112822 TGGGGAACAATCAAATTGAGACTTATA 58.887 33.333 1.10 0.00 42.83 0.98
2477 2518 6.953520 TGGGGAACAATCAAATTGAGACTTAT 59.046 34.615 1.10 0.00 42.83 1.73
2478 2519 6.310941 TGGGGAACAATCAAATTGAGACTTA 58.689 36.000 1.10 0.00 42.83 2.24
2479 2520 5.147032 TGGGGAACAATCAAATTGAGACTT 58.853 37.500 1.10 0.00 42.83 3.01
2480 2521 4.739793 TGGGGAACAATCAAATTGAGACT 58.260 39.130 1.10 0.00 42.83 3.24
2481 2522 5.185635 TGATGGGGAACAATCAAATTGAGAC 59.814 40.000 1.10 0.00 42.83 3.36
2482 2523 5.185635 GTGATGGGGAACAATCAAATTGAGA 59.814 40.000 1.10 0.00 42.83 3.27
2483 2524 5.047164 TGTGATGGGGAACAATCAAATTGAG 60.047 40.000 1.10 0.00 42.83 3.02
2484 2525 4.837298 TGTGATGGGGAACAATCAAATTGA 59.163 37.500 0.00 0.00 42.83 2.57
2485 2526 5.149973 TGTGATGGGGAACAATCAAATTG 57.850 39.130 0.00 0.00 45.59 2.32
2486 2527 5.736813 CATGTGATGGGGAACAATCAAATT 58.263 37.500 0.00 0.00 0.00 1.82
2487 2528 4.383335 GCATGTGATGGGGAACAATCAAAT 60.383 41.667 0.00 0.00 0.00 2.32
2488 2529 3.055963 GCATGTGATGGGGAACAATCAAA 60.056 43.478 0.00 0.00 0.00 2.69
2489 2530 2.496871 GCATGTGATGGGGAACAATCAA 59.503 45.455 0.00 0.00 0.00 2.57
2490 2531 2.101783 GCATGTGATGGGGAACAATCA 58.898 47.619 0.00 0.00 0.00 2.57
2491 2532 2.360165 GAGCATGTGATGGGGAACAATC 59.640 50.000 0.00 0.00 0.00 2.67
2492 2533 2.291735 TGAGCATGTGATGGGGAACAAT 60.292 45.455 0.00 0.00 0.00 2.71
2493 2534 1.075212 TGAGCATGTGATGGGGAACAA 59.925 47.619 0.00 0.00 0.00 2.83
2494 2535 0.697658 TGAGCATGTGATGGGGAACA 59.302 50.000 0.00 0.00 0.00 3.18
2495 2536 1.065199 TCTGAGCATGTGATGGGGAAC 60.065 52.381 0.00 0.00 0.00 3.62
2496 2537 1.288188 TCTGAGCATGTGATGGGGAA 58.712 50.000 0.00 0.00 0.00 3.97
2497 2538 1.514983 ATCTGAGCATGTGATGGGGA 58.485 50.000 0.00 0.00 0.00 4.81
2498 2539 2.359981 AATCTGAGCATGTGATGGGG 57.640 50.000 0.00 0.00 0.00 4.96
2499 2540 5.840243 TTAAAATCTGAGCATGTGATGGG 57.160 39.130 0.00 0.00 0.00 4.00
2500 2541 7.254319 GCAATTTAAAATCTGAGCATGTGATGG 60.254 37.037 0.00 0.00 0.00 3.51
2501 2542 7.276878 TGCAATTTAAAATCTGAGCATGTGATG 59.723 33.333 0.00 0.00 0.00 3.07
2502 2543 7.324935 TGCAATTTAAAATCTGAGCATGTGAT 58.675 30.769 0.00 0.00 0.00 3.06
2503 2544 6.689554 TGCAATTTAAAATCTGAGCATGTGA 58.310 32.000 0.00 0.00 0.00 3.58
2504 2545 6.954616 TGCAATTTAAAATCTGAGCATGTG 57.045 33.333 0.00 0.00 0.00 3.21
2505 2546 9.656040 TTAATGCAATTTAAAATCTGAGCATGT 57.344 25.926 0.00 0.00 40.86 3.21
2535 2576 8.757982 AGTTTCTCATAATCCTTGCATGTAAT 57.242 30.769 0.00 0.00 0.00 1.89
2536 2577 8.461222 CAAGTTTCTCATAATCCTTGCATGTAA 58.539 33.333 0.00 0.00 0.00 2.41
2537 2578 7.828717 TCAAGTTTCTCATAATCCTTGCATGTA 59.171 33.333 0.00 0.00 31.64 2.29
2538 2579 6.660521 TCAAGTTTCTCATAATCCTTGCATGT 59.339 34.615 0.00 0.00 31.64 3.21
2539 2580 6.971184 GTCAAGTTTCTCATAATCCTTGCATG 59.029 38.462 0.00 0.00 31.64 4.06
2540 2581 6.096001 GGTCAAGTTTCTCATAATCCTTGCAT 59.904 38.462 0.00 0.00 31.64 3.96
2541 2582 5.415701 GGTCAAGTTTCTCATAATCCTTGCA 59.584 40.000 0.00 0.00 31.64 4.08
2542 2583 5.415701 TGGTCAAGTTTCTCATAATCCTTGC 59.584 40.000 0.00 0.00 31.64 4.01
2543 2584 7.452880 TTGGTCAAGTTTCTCATAATCCTTG 57.547 36.000 0.00 0.00 0.00 3.61
2544 2585 7.363268 GCATTGGTCAAGTTTCTCATAATCCTT 60.363 37.037 0.00 0.00 0.00 3.36
2545 2586 6.096001 GCATTGGTCAAGTTTCTCATAATCCT 59.904 38.462 0.00 0.00 0.00 3.24
2546 2587 6.127647 TGCATTGGTCAAGTTTCTCATAATCC 60.128 38.462 0.00 0.00 0.00 3.01
2547 2588 6.855836 TGCATTGGTCAAGTTTCTCATAATC 58.144 36.000 0.00 0.00 0.00 1.75
2548 2589 6.839124 TGCATTGGTCAAGTTTCTCATAAT 57.161 33.333 0.00 0.00 0.00 1.28
2549 2590 6.839124 ATGCATTGGTCAAGTTTCTCATAA 57.161 33.333 0.00 0.00 0.00 1.90
2550 2591 9.625747 TTATATGCATTGGTCAAGTTTCTCATA 57.374 29.630 3.54 0.00 0.00 2.15
2551 2592 8.523915 TTATATGCATTGGTCAAGTTTCTCAT 57.476 30.769 3.54 0.00 0.00 2.90
2552 2593 7.936496 TTATATGCATTGGTCAAGTTTCTCA 57.064 32.000 3.54 0.00 0.00 3.27
2553 2594 9.455847 GAATTATATGCATTGGTCAAGTTTCTC 57.544 33.333 3.54 0.00 0.00 2.87
2554 2595 8.970020 TGAATTATATGCATTGGTCAAGTTTCT 58.030 29.630 3.54 0.00 0.00 2.52
2555 2596 9.754382 ATGAATTATATGCATTGGTCAAGTTTC 57.246 29.630 3.54 0.00 0.00 2.78
2556 2597 9.537192 CATGAATTATATGCATTGGTCAAGTTT 57.463 29.630 3.54 0.00 0.00 2.66
2572 2613 9.737844 TGCTATTTACTCCATGCATGAATTATA 57.262 29.630 28.31 14.65 0.00 0.98
2573 2614 8.640063 TGCTATTTACTCCATGCATGAATTAT 57.360 30.769 28.31 14.33 0.00 1.28
2574 2615 8.462589 TTGCTATTTACTCCATGCATGAATTA 57.537 30.769 28.31 11.99 0.00 1.40
2575 2616 6.964807 TGCTATTTACTCCATGCATGAATT 57.035 33.333 28.31 12.98 0.00 2.17
2576 2617 6.964807 TTGCTATTTACTCCATGCATGAAT 57.035 33.333 28.31 19.58 0.00 2.57
2577 2618 6.772360 TTTGCTATTTACTCCATGCATGAA 57.228 33.333 28.31 13.90 0.00 2.57
2578 2619 6.772360 TTTTGCTATTTACTCCATGCATGA 57.228 33.333 28.31 12.81 0.00 3.07
2599 2640 6.002082 CCTAGCCTGTAAACTGGTAGTTTTT 58.998 40.000 11.66 0.00 45.38 1.94
2600 2641 5.514310 CCCTAGCCTGTAAACTGGTAGTTTT 60.514 44.000 11.66 0.00 45.38 2.43
2602 2643 3.518303 CCCTAGCCTGTAAACTGGTAGTT 59.482 47.826 7.72 0.00 40.80 2.24
2603 2644 3.105283 CCCTAGCCTGTAAACTGGTAGT 58.895 50.000 7.72 0.00 37.30 2.73
2604 2645 3.105283 ACCCTAGCCTGTAAACTGGTAG 58.895 50.000 7.72 7.78 37.30 3.18
2605 2646 3.194904 ACCCTAGCCTGTAAACTGGTA 57.805 47.619 7.72 0.07 37.30 3.25
2606 2647 2.040342 ACCCTAGCCTGTAAACTGGT 57.960 50.000 7.72 0.00 37.30 4.00
2607 2648 2.355818 GGAACCCTAGCCTGTAAACTGG 60.356 54.545 1.88 1.88 37.93 4.00
2608 2649 2.304761 TGGAACCCTAGCCTGTAAACTG 59.695 50.000 0.00 0.00 0.00 3.16
2609 2650 2.627933 TGGAACCCTAGCCTGTAAACT 58.372 47.619 0.00 0.00 0.00 2.66
2610 2651 3.428413 TTGGAACCCTAGCCTGTAAAC 57.572 47.619 0.00 0.00 0.00 2.01
2611 2652 4.456662 TTTTGGAACCCTAGCCTGTAAA 57.543 40.909 0.00 0.00 0.00 2.01
2612 2653 4.456662 TTTTTGGAACCCTAGCCTGTAA 57.543 40.909 0.00 0.00 0.00 2.41
2637 2678 9.378551 GGTTTCTGAGAAAAATTAAAAGTTGGT 57.621 29.630 9.51 0.00 0.00 3.67
2638 2679 9.599866 AGGTTTCTGAGAAAAATTAAAAGTTGG 57.400 29.630 9.51 0.00 0.00 3.77
2646 2687 8.726988 CGATTGGTAGGTTTCTGAGAAAAATTA 58.273 33.333 9.51 0.24 0.00 1.40
2647 2688 7.593825 CGATTGGTAGGTTTCTGAGAAAAATT 58.406 34.615 9.51 1.18 0.00 1.82
2648 2689 6.349363 GCGATTGGTAGGTTTCTGAGAAAAAT 60.349 38.462 9.51 4.71 0.00 1.82
2649 2690 5.048991 GCGATTGGTAGGTTTCTGAGAAAAA 60.049 40.000 9.51 0.00 0.00 1.94
2650 2691 4.454504 GCGATTGGTAGGTTTCTGAGAAAA 59.545 41.667 9.51 0.00 0.00 2.29
2651 2692 4.000988 GCGATTGGTAGGTTTCTGAGAAA 58.999 43.478 3.02 3.02 0.00 2.52
2652 2693 3.596214 GCGATTGGTAGGTTTCTGAGAA 58.404 45.455 0.00 0.00 0.00 2.87
2653 2694 2.416836 CGCGATTGGTAGGTTTCTGAGA 60.417 50.000 0.00 0.00 0.00 3.27
2654 2695 1.927174 CGCGATTGGTAGGTTTCTGAG 59.073 52.381 0.00 0.00 0.00 3.35
2655 2696 1.274167 ACGCGATTGGTAGGTTTCTGA 59.726 47.619 15.93 0.00 0.00 3.27
2656 2697 1.393539 CACGCGATTGGTAGGTTTCTG 59.606 52.381 15.93 0.00 0.00 3.02
2657 2698 1.674817 CCACGCGATTGGTAGGTTTCT 60.675 52.381 15.93 0.00 0.00 2.52
2658 2699 0.725117 CCACGCGATTGGTAGGTTTC 59.275 55.000 15.93 0.00 0.00 2.78
2659 2700 2.849081 CCACGCGATTGGTAGGTTT 58.151 52.632 15.93 0.00 0.00 3.27
2660 2701 4.609995 CCACGCGATTGGTAGGTT 57.390 55.556 15.93 0.00 0.00 3.50
2673 2714 2.181426 TTTTGAAACAGCGAACCACG 57.819 45.000 0.00 0.00 45.66 4.94
2690 2731 0.460459 CACGGGCGTTTTGGGTTTTT 60.460 50.000 0.00 0.00 0.00 1.94
2691 2732 1.142097 CACGGGCGTTTTGGGTTTT 59.858 52.632 0.00 0.00 0.00 2.43
2692 2733 1.753463 TCACGGGCGTTTTGGGTTT 60.753 52.632 0.00 0.00 0.00 3.27
2693 2734 2.124236 TCACGGGCGTTTTGGGTT 60.124 55.556 0.00 0.00 0.00 4.11
2694 2735 2.042404 TAGTCACGGGCGTTTTGGGT 62.042 55.000 0.00 0.00 0.00 4.51
2695 2736 1.296056 CTAGTCACGGGCGTTTTGGG 61.296 60.000 0.00 0.00 0.00 4.12
2696 2737 1.908066 GCTAGTCACGGGCGTTTTGG 61.908 60.000 0.00 0.00 0.00 3.28
2697 2738 1.495951 GCTAGTCACGGGCGTTTTG 59.504 57.895 0.00 0.00 0.00 2.44
2698 2739 2.025418 CGCTAGTCACGGGCGTTTT 61.025 57.895 8.85 0.00 43.28 2.43
2699 2740 2.431942 CGCTAGTCACGGGCGTTT 60.432 61.111 8.85 0.00 43.28 3.60
2703 2744 1.591619 GTTAAATCGCTAGTCACGGGC 59.408 52.381 0.00 0.00 0.00 6.13
2704 2745 2.199236 GGTTAAATCGCTAGTCACGGG 58.801 52.381 0.00 0.00 0.00 5.28
2705 2746 1.850441 CGGTTAAATCGCTAGTCACGG 59.150 52.381 0.00 0.00 0.00 4.94
2706 2747 2.523015 ACGGTTAAATCGCTAGTCACG 58.477 47.619 0.00 0.00 0.00 4.35
2707 2748 4.916099 AAACGGTTAAATCGCTAGTCAC 57.084 40.909 0.00 0.00 0.00 3.67
2708 2749 5.697633 AGAAAAACGGTTAAATCGCTAGTCA 59.302 36.000 0.00 0.00 0.00 3.41
2709 2750 6.161911 AGAAAAACGGTTAAATCGCTAGTC 57.838 37.500 0.00 0.00 0.00 2.59
2710 2751 7.360353 GGTTAGAAAAACGGTTAAATCGCTAGT 60.360 37.037 0.00 0.00 0.00 2.57
2711 2752 6.957635 GGTTAGAAAAACGGTTAAATCGCTAG 59.042 38.462 0.00 0.00 0.00 3.42
2712 2753 6.400940 CGGTTAGAAAAACGGTTAAATCGCTA 60.401 38.462 0.00 0.00 42.20 4.26
2713 2754 5.615325 CGGTTAGAAAAACGGTTAAATCGCT 60.615 40.000 0.00 0.00 42.20 4.93
2714 2755 4.550744 CGGTTAGAAAAACGGTTAAATCGC 59.449 41.667 0.00 0.00 42.20 4.58
2725 2766 2.810274 GGGTCCAGACGGTTAGAAAAAC 59.190 50.000 0.00 0.00 0.00 2.43
2726 2767 2.438763 TGGGTCCAGACGGTTAGAAAAA 59.561 45.455 0.00 0.00 0.00 1.94
2727 2768 2.048601 TGGGTCCAGACGGTTAGAAAA 58.951 47.619 0.00 0.00 0.00 2.29
2728 2769 1.345415 GTGGGTCCAGACGGTTAGAAA 59.655 52.381 0.00 0.00 0.00 2.52
2729 2770 0.971386 GTGGGTCCAGACGGTTAGAA 59.029 55.000 0.00 0.00 0.00 2.10
2730 2771 0.178955 TGTGGGTCCAGACGGTTAGA 60.179 55.000 0.00 0.00 0.00 2.10
2731 2772 0.902531 ATGTGGGTCCAGACGGTTAG 59.097 55.000 0.00 0.00 0.00 2.34
2732 2773 0.611200 CATGTGGGTCCAGACGGTTA 59.389 55.000 0.00 0.00 0.00 2.85
2733 2774 1.374947 CATGTGGGTCCAGACGGTT 59.625 57.895 0.00 0.00 0.00 4.44
2734 2775 1.827399 GACATGTGGGTCCAGACGGT 61.827 60.000 1.15 0.00 0.00 4.83
2735 2776 1.079127 GACATGTGGGTCCAGACGG 60.079 63.158 1.15 0.00 0.00 4.79
2736 2777 0.390340 CTGACATGTGGGTCCAGACG 60.390 60.000 1.15 0.00 36.97 4.18
2737 2778 0.036010 CCTGACATGTGGGTCCAGAC 60.036 60.000 1.15 0.00 36.97 3.51
2738 2779 1.841302 GCCTGACATGTGGGTCCAGA 61.841 60.000 1.15 0.00 36.97 3.86
2739 2780 1.377725 GCCTGACATGTGGGTCCAG 60.378 63.158 1.15 3.54 36.97 3.86
2740 2781 2.756400 GCCTGACATGTGGGTCCA 59.244 61.111 1.15 0.00 36.97 4.02
2741 2782 2.044946 GGCCTGACATGTGGGTCC 60.045 66.667 1.15 7.50 36.97 4.46
2742 2783 1.675641 GTGGCCTGACATGTGGGTC 60.676 63.158 1.15 7.64 38.29 4.46
2743 2784 2.436109 GTGGCCTGACATGTGGGT 59.564 61.111 1.15 0.00 0.00 4.51
2744 2785 2.361610 GGTGGCCTGACATGTGGG 60.362 66.667 1.15 6.58 0.00 4.61
2745 2786 2.759114 AGGTGGCCTGACATGTGG 59.241 61.111 1.15 0.00 29.57 4.17
2819 2860 5.848138 GGTATTTACCCTGGTTCCGACCG 62.848 56.522 0.00 0.00 43.64 4.79
2820 2861 2.420547 GGTATTTACCCTGGTTCCGACC 60.421 54.545 0.00 0.00 42.29 4.79
2821 2862 2.910199 GGTATTTACCCTGGTTCCGAC 58.090 52.381 0.00 0.00 40.53 4.79
2832 2873 0.924090 AGCAGGGTGGGGTATTTACC 59.076 55.000 0.00 0.00 45.71 2.85
2833 2874 1.133884 GGAGCAGGGTGGGGTATTTAC 60.134 57.143 0.00 0.00 0.00 2.01
2834 2875 1.218844 GGAGCAGGGTGGGGTATTTA 58.781 55.000 0.00 0.00 0.00 1.40
2835 2876 1.580994 GGGAGCAGGGTGGGGTATTT 61.581 60.000 0.00 0.00 0.00 1.40
2836 2877 2.006991 GGGAGCAGGGTGGGGTATT 61.007 63.158 0.00 0.00 0.00 1.89
2837 2878 2.368329 GGGAGCAGGGTGGGGTAT 60.368 66.667 0.00 0.00 0.00 2.73
2838 2879 3.948360 TGGGAGCAGGGTGGGGTA 61.948 66.667 0.00 0.00 0.00 3.69
2841 2882 3.721706 GAGTGGGAGCAGGGTGGG 61.722 72.222 0.00 0.00 0.00 4.61
2842 2883 2.930019 TGAGTGGGAGCAGGGTGG 60.930 66.667 0.00 0.00 0.00 4.61
2843 2884 2.219875 AGTGAGTGGGAGCAGGGTG 61.220 63.158 0.00 0.00 0.00 4.61
2844 2885 2.205462 AGTGAGTGGGAGCAGGGT 59.795 61.111 0.00 0.00 0.00 4.34
2845 2886 2.667418 CAGTGAGTGGGAGCAGGG 59.333 66.667 0.00 0.00 0.00 4.45
2846 2887 2.046507 GCAGTGAGTGGGAGCAGG 60.047 66.667 0.00 0.00 0.00 4.85
2847 2888 1.079266 GAGCAGTGAGTGGGAGCAG 60.079 63.158 0.00 0.00 0.00 4.24
2848 2889 2.935740 CGAGCAGTGAGTGGGAGCA 61.936 63.158 0.00 0.00 0.00 4.26
2849 2890 2.125753 CGAGCAGTGAGTGGGAGC 60.126 66.667 0.00 0.00 0.00 4.70
2850 2891 2.125753 GCGAGCAGTGAGTGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
2851 2892 2.601666 AGCGAGCAGTGAGTGGGA 60.602 61.111 0.00 0.00 0.00 4.37
2852 2893 2.125753 GAGCGAGCAGTGAGTGGG 60.126 66.667 0.00 0.00 0.00 4.61
2853 2894 1.735920 GTGAGCGAGCAGTGAGTGG 60.736 63.158 0.00 0.00 0.00 4.00
2854 2895 0.732196 GAGTGAGCGAGCAGTGAGTG 60.732 60.000 0.00 0.00 0.00 3.51
2855 2896 1.583986 GAGTGAGCGAGCAGTGAGT 59.416 57.895 0.00 0.00 0.00 3.41
2856 2897 1.153862 GGAGTGAGCGAGCAGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
2857 2898 2.640302 GGGAGTGAGCGAGCAGTGA 61.640 63.158 0.00 0.00 0.00 3.41
2858 2899 2.125753 GGGAGTGAGCGAGCAGTG 60.126 66.667 0.00 0.00 0.00 3.66
2859 2900 3.386237 GGGGAGTGAGCGAGCAGT 61.386 66.667 0.00 0.00 0.00 4.40
2860 2901 3.073735 AGGGGAGTGAGCGAGCAG 61.074 66.667 0.00 0.00 0.00 4.24
2861 2902 3.385384 CAGGGGAGTGAGCGAGCA 61.385 66.667 0.00 0.00 0.00 4.26
2862 2903 4.828925 GCAGGGGAGTGAGCGAGC 62.829 72.222 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.