Multiple sequence alignment - TraesCS4D01G219400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G219400 chr4D 100.000 4115 0 0 1 4115 374830463 374834577 0.000000e+00 7600.0
1 TraesCS4D01G219400 chr4D 93.434 198 12 1 3539 3735 506103973 506103776 4.020000e-75 292.0
2 TraesCS4D01G219400 chr4D 86.607 224 26 4 3895 4115 84009135 84009357 1.140000e-60 244.0
3 TraesCS4D01G219400 chr4A 89.313 3462 193 84 1 3377 89624304 89620935 0.000000e+00 4180.0
4 TraesCS4D01G219400 chr4A 95.652 69 3 0 3478 3546 225336619 225336551 1.210000e-20 111.0
5 TraesCS4D01G219400 chr4B 90.947 2640 145 41 823 3405 461734397 461736999 0.000000e+00 3465.0
6 TraesCS4D01G219400 chr4B 88.744 844 39 25 1 825 461733241 461734047 0.000000e+00 981.0
7 TraesCS4D01G219400 chr1B 91.480 223 17 2 3895 4115 567690456 567690678 5.170000e-79 305.0
8 TraesCS4D01G219400 chr6D 95.288 191 9 0 3537 3727 123116364 123116554 1.860000e-78 303.0
9 TraesCS4D01G219400 chr5D 95.263 190 9 0 3539 3728 58419326 58419515 6.690000e-78 302.0
10 TraesCS4D01G219400 chr5D 95.187 187 9 0 3542 3728 15537834 15538020 3.110000e-76 296.0
11 TraesCS4D01G219400 chr5D 94.301 193 10 1 3542 3734 27888490 27888681 1.120000e-75 294.0
12 TraesCS4D01G219400 chr5D 92.754 69 5 0 3478 3546 332918866 332918798 2.620000e-17 100.0
13 TraesCS4D01G219400 chr3D 95.263 190 8 1 3540 3729 454744836 454745024 2.400000e-77 300.0
14 TraesCS4D01G219400 chr3D 90.323 186 13 4 3718 3898 476728305 476728120 5.320000e-59 239.0
15 TraesCS4D01G219400 chr7A 94.709 189 8 2 3541 3729 712143495 712143309 4.020000e-75 292.0
16 TraesCS4D01G219400 chr7A 88.601 193 15 6 3718 3904 734198457 734198266 1.150000e-55 228.0
17 TraesCS4D01G219400 chr7A 88.083 193 16 6 3718 3904 734194478 734194287 5.350000e-54 222.0
18 TraesCS4D01G219400 chr7A 88.083 193 16 6 3718 3904 734206433 734206242 5.350000e-54 222.0
19 TraesCS4D01G219400 chr7A 87.565 193 17 6 3718 3904 734202441 734202250 2.490000e-52 217.0
20 TraesCS4D01G219400 chr7A 89.286 84 6 3 3466 3546 707496091 707496174 7.280000e-18 102.0
21 TraesCS4D01G219400 chr7A 91.549 71 4 1 3478 3546 80992570 80992640 3.390000e-16 97.1
22 TraesCS4D01G219400 chr2B 94.681 188 10 0 3541 3728 763446833 763446646 4.020000e-75 292.0
23 TraesCS4D01G219400 chr2B 92.574 202 13 2 3528 3727 28252406 28252607 5.200000e-74 289.0
24 TraesCS4D01G219400 chr2B 81.928 249 43 2 2762 3010 296478890 296479136 4.170000e-50 209.0
25 TraesCS4D01G219400 chr2B 92.754 69 5 0 3478 3546 23780126 23780194 2.620000e-17 100.0
26 TraesCS4D01G219400 chr7B 88.789 223 23 2 3895 4115 682744741 682744963 5.240000e-69 272.0
27 TraesCS4D01G219400 chr7B 83.594 128 19 2 3986 4112 595254753 595254627 7.230000e-23 119.0
28 TraesCS4D01G219400 chrUn 88.601 193 15 6 3718 3904 272230599 272230408 1.150000e-55 228.0
29 TraesCS4D01G219400 chrUn 88.601 193 15 6 3718 3904 279336081 279335890 1.150000e-55 228.0
30 TraesCS4D01G219400 chr5A 86.911 191 19 5 3718 3902 421857553 421857743 4.170000e-50 209.0
31 TraesCS4D01G219400 chr5A 92.754 69 5 0 3478 3546 540725983 540725915 2.620000e-17 100.0
32 TraesCS4D01G219400 chr6A 87.097 186 16 6 3720 3898 254835849 254835665 1.940000e-48 204.0
33 TraesCS4D01G219400 chr1D 83.260 227 30 7 3895 4115 341272153 341271929 6.970000e-48 202.0
34 TraesCS4D01G219400 chr1D 89.873 79 6 2 3461 3539 480957436 480957512 2.620000e-17 100.0
35 TraesCS4D01G219400 chr1D 92.647 68 5 0 3478 3545 37556908 37556841 9.410000e-17 99.0
36 TraesCS4D01G219400 chr3A 86.992 123 14 1 2733 2853 271637961 271638083 1.990000e-28 137.0
37 TraesCS4D01G219400 chr6B 90.411 73 5 2 3466 3536 172024792 172024864 1.220000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G219400 chr4D 374830463 374834577 4114 False 7600.00 7600 100.0000 1 4115 1 chr4D.!!$F2 4114
1 TraesCS4D01G219400 chr4A 89620935 89624304 3369 True 4180.00 4180 89.3130 1 3377 1 chr4A.!!$R1 3376
2 TraesCS4D01G219400 chr4B 461733241 461736999 3758 False 2223.00 3465 89.8455 1 3405 2 chr4B.!!$F1 3404
3 TraesCS4D01G219400 chr7A 734194287 734206433 12146 True 222.25 228 88.0830 3718 3904 4 chr7A.!!$R2 186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 579 0.034896 CACCGGCCAAGTTGACTACT 59.965 55.0 0.0 0.0 39.32 2.57 F
1420 1863 0.034896 TTGGTTTCTCCTCTGACGCC 59.965 55.0 0.0 0.0 37.07 5.68 F
2169 2630 0.469892 TGTGACAGGTGCAGAGGAGA 60.470 55.0 0.0 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2378 0.593618 TGTCAGCTGACTCACGAGAC 59.406 55.0 38.81 17.16 44.99 3.36 R
2645 3106 0.179056 CACCGTCCTCCTGTTGTGTT 60.179 55.0 0.00 0.00 0.00 3.32 R
3941 8207 0.108963 CCTACGGGGTGGTCAAACAA 59.891 55.0 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 88 2.887568 GGCGACATGCTCGGAGTG 60.888 66.667 15.96 0.39 43.18 3.51
82 90 2.161486 GCGACATGCTCGGAGTGTC 61.161 63.158 15.23 15.23 43.18 3.67
83 91 1.517257 CGACATGCTCGGAGTGTCC 60.517 63.158 17.92 5.97 39.17 4.02
147 155 1.870458 CGCAGCCGAACGAACGATA 60.870 57.895 0.14 0.00 36.29 2.92
148 156 1.629504 GCAGCCGAACGAACGATAC 59.370 57.895 0.14 0.00 35.09 2.24
150 158 0.914551 CAGCCGAACGAACGATACTG 59.085 55.000 0.14 7.88 35.09 2.74
152 160 1.200716 AGCCGAACGAACGATACTGAA 59.799 47.619 0.14 0.00 35.09 3.02
153 161 2.159282 AGCCGAACGAACGATACTGAAT 60.159 45.455 0.14 0.00 35.09 2.57
154 162 3.065786 AGCCGAACGAACGATACTGAATA 59.934 43.478 0.14 0.00 35.09 1.75
156 164 4.266029 GCCGAACGAACGATACTGAATAAA 59.734 41.667 0.14 0.00 35.09 1.40
157 165 5.553952 GCCGAACGAACGATACTGAATAAAG 60.554 44.000 0.14 0.00 35.09 1.85
159 167 6.075519 CCGAACGAACGATACTGAATAAAGAG 60.076 42.308 0.14 0.00 35.09 2.85
160 168 6.468319 CGAACGAACGATACTGAATAAAGAGT 59.532 38.462 0.14 0.00 35.09 3.24
162 170 8.612233 AACGAACGATACTGAATAAAGAGTAC 57.388 34.615 0.14 0.00 0.00 2.73
163 171 7.983307 ACGAACGATACTGAATAAAGAGTACT 58.017 34.615 0.00 0.00 0.00 2.73
164 172 8.121708 ACGAACGATACTGAATAAAGAGTACTC 58.878 37.037 15.41 15.41 0.00 2.59
248 264 3.909258 GACGATGTCACGGTGGCGT 62.909 63.158 7.25 7.25 37.61 5.68
318 342 4.609995 CCACGGTGGCGTTCTATT 57.390 55.556 15.29 0.00 0.00 1.73
345 369 1.775459 TGGCTAGTGGTTGGTTGGTTA 59.225 47.619 0.00 0.00 0.00 2.85
372 397 6.038356 CCTTTTGCAGCTGAAAATAATCGAT 58.962 36.000 20.69 0.00 0.00 3.59
373 398 6.532657 CCTTTTGCAGCTGAAAATAATCGATT 59.467 34.615 20.69 16.15 0.00 3.34
540 579 0.034896 CACCGGCCAAGTTGACTACT 59.965 55.000 0.00 0.00 39.32 2.57
541 580 1.274167 CACCGGCCAAGTTGACTACTA 59.726 52.381 0.00 0.00 35.54 1.82
542 581 1.274447 ACCGGCCAAGTTGACTACTAC 59.726 52.381 0.00 0.00 35.54 2.73
543 582 1.549170 CCGGCCAAGTTGACTACTACT 59.451 52.381 2.24 0.00 35.54 2.57
544 583 2.607187 CGGCCAAGTTGACTACTACTG 58.393 52.381 2.24 0.00 35.54 2.74
545 584 2.029290 CGGCCAAGTTGACTACTACTGT 60.029 50.000 2.24 0.00 35.54 3.55
616 655 1.822990 TGACCACGATCTACTTCCACC 59.177 52.381 0.00 0.00 0.00 4.61
635 675 0.402887 CTTTGGGTTCCCGGGTAACT 59.597 55.000 22.86 0.00 0.00 2.24
703 743 2.281208 TTCGTTTGACCAGGCCCG 60.281 61.111 0.00 0.00 0.00 6.13
712 752 4.208686 CCAGGCCCGCTCGTACTC 62.209 72.222 0.00 0.00 0.00 2.59
717 757 2.327244 CCCGCTCGTACTCGTAGC 59.673 66.667 0.00 0.00 37.10 3.58
719 759 1.297451 CCGCTCGTACTCGTAGCAC 60.297 63.158 0.00 0.00 38.82 4.40
926 1327 3.552132 TGGTCTGCGCAATATAAGGAA 57.448 42.857 13.05 0.00 0.00 3.36
928 1329 3.133901 TGGTCTGCGCAATATAAGGAAGA 59.866 43.478 13.05 0.00 0.00 2.87
930 1331 3.182572 GTCTGCGCAATATAAGGAAGACG 59.817 47.826 13.05 0.00 0.00 4.18
974 1378 4.436998 CCACCGGTCGTCCAGCTC 62.437 72.222 2.59 0.00 0.00 4.09
975 1379 4.436998 CACCGGTCGTCCAGCTCC 62.437 72.222 2.59 0.00 0.00 4.70
1198 1621 2.584608 GTGCACCTCCGCCATACT 59.415 61.111 5.22 0.00 0.00 2.12
1200 1623 0.529992 GTGCACCTCCGCCATACTAC 60.530 60.000 5.22 0.00 0.00 2.73
1201 1624 0.973496 TGCACCTCCGCCATACTACA 60.973 55.000 0.00 0.00 0.00 2.74
1203 1626 1.202651 GCACCTCCGCCATACTACAAT 60.203 52.381 0.00 0.00 0.00 2.71
1204 1627 2.036733 GCACCTCCGCCATACTACAATA 59.963 50.000 0.00 0.00 0.00 1.90
1205 1628 3.650139 CACCTCCGCCATACTACAATAC 58.350 50.000 0.00 0.00 0.00 1.89
1208 1631 4.202223 ACCTCCGCCATACTACAATACAAG 60.202 45.833 0.00 0.00 0.00 3.16
1210 1633 4.940463 TCCGCCATACTACAATACAAGTC 58.060 43.478 0.00 0.00 0.00 3.01
1211 1634 4.056050 CCGCCATACTACAATACAAGTCC 58.944 47.826 0.00 0.00 0.00 3.85
1212 1635 4.056050 CGCCATACTACAATACAAGTCCC 58.944 47.826 0.00 0.00 0.00 4.46
1216 1639 6.281405 CCATACTACAATACAAGTCCCTGTC 58.719 44.000 0.00 0.00 0.00 3.51
1217 1640 4.820894 ACTACAATACAAGTCCCTGTCC 57.179 45.455 0.00 0.00 0.00 4.02
1218 1641 3.518303 ACTACAATACAAGTCCCTGTCCC 59.482 47.826 0.00 0.00 0.00 4.46
1219 1642 2.632537 ACAATACAAGTCCCTGTCCCT 58.367 47.619 0.00 0.00 0.00 4.20
1220 1643 2.572104 ACAATACAAGTCCCTGTCCCTC 59.428 50.000 0.00 0.00 0.00 4.30
1222 1645 2.642171 TACAAGTCCCTGTCCCTCAT 57.358 50.000 0.00 0.00 0.00 2.90
1223 1646 1.280457 ACAAGTCCCTGTCCCTCATC 58.720 55.000 0.00 0.00 0.00 2.92
1245 1676 2.802719 TCAAATTCCCCTTGCTGTACC 58.197 47.619 0.00 0.00 0.00 3.34
1418 1861 2.558795 TCTCTTGGTTTCTCCTCTGACG 59.441 50.000 0.00 0.00 37.07 4.35
1419 1862 1.000955 TCTTGGTTTCTCCTCTGACGC 59.999 52.381 0.00 0.00 37.07 5.19
1420 1863 0.034896 TTGGTTTCTCCTCTGACGCC 59.965 55.000 0.00 0.00 37.07 5.68
1423 1866 3.296709 TTTCTCCTCTGACGCCGCC 62.297 63.158 0.00 0.00 0.00 6.13
1425 1868 4.200283 CTCCTCTGACGCCGCCTC 62.200 72.222 0.00 0.00 0.00 4.70
1428 1871 3.764466 CTCTGACGCCGCCTCCTT 61.764 66.667 0.00 0.00 0.00 3.36
1430 1873 3.764466 CTGACGCCGCCTCCTTCT 61.764 66.667 0.00 0.00 0.00 2.85
1431 1874 3.997064 CTGACGCCGCCTCCTTCTG 62.997 68.421 0.00 0.00 0.00 3.02
1433 1876 4.379243 ACGCCGCCTCCTTCTGTG 62.379 66.667 0.00 0.00 0.00 3.66
1437 1880 2.571757 CGCCTCCTTCTGTGCGTA 59.428 61.111 0.00 0.00 41.95 4.42
1438 1881 1.805945 CGCCTCCTTCTGTGCGTAC 60.806 63.158 0.00 0.00 41.95 3.67
1862 2311 4.452733 GACTTCCCCGACAGCCCG 62.453 72.222 0.00 0.00 0.00 6.13
1926 2375 4.566545 TGTTCATGCGAGTTTTGTGATT 57.433 36.364 0.00 0.00 0.00 2.57
1929 2378 4.408993 TCATGCGAGTTTTGTGATTCTG 57.591 40.909 0.00 0.00 0.00 3.02
1934 2388 3.422343 GCGAGTTTTGTGATTCTGTCTCG 60.422 47.826 0.00 0.00 43.78 4.04
1943 2397 2.095008 TGATTCTGTCTCGTGAGTCAGC 60.095 50.000 16.14 6.36 41.94 4.26
1946 2400 0.877743 CTGTCTCGTGAGTCAGCTGA 59.122 55.000 13.74 13.74 37.66 4.26
1981 2442 3.246226 GCGGTAATGTGATGCAGAGTAAG 59.754 47.826 0.00 0.00 0.00 2.34
2042 2503 2.872038 GCTGGGAAATCTGTCGAACAGT 60.872 50.000 12.62 1.59 46.03 3.55
2096 2557 1.645034 GTCAGTGTCATGTCATCGGG 58.355 55.000 0.00 0.00 0.00 5.14
2101 2562 1.745087 GTGTCATGTCATCGGGCAAAT 59.255 47.619 0.00 0.00 0.00 2.32
2169 2630 0.469892 TGTGACAGGTGCAGAGGAGA 60.470 55.000 0.00 0.00 0.00 3.71
2640 3101 3.889134 CTGGACTCCGCAGCTGCAA 62.889 63.158 36.03 22.95 42.21 4.08
2658 3125 1.101049 AACGGCAACACAACAGGAGG 61.101 55.000 0.00 0.00 0.00 4.30
2663 3130 0.179056 CAACACAACAGGAGGACGGT 60.179 55.000 0.00 0.00 0.00 4.83
2664 3131 0.179056 AACACAACAGGAGGACGGTG 60.179 55.000 0.00 0.00 0.00 4.94
2682 3149 1.151450 GTCCGCAATGGGGATGGAT 59.849 57.895 21.98 0.00 46.03 3.41
2856 3329 1.379977 CAGAGCCCCTCCGTACAGA 60.380 63.158 0.00 0.00 0.00 3.41
2867 3340 2.348888 CGTACAGAAGGAGCCCCGT 61.349 63.158 0.00 0.00 37.58 5.28
3115 3588 1.812922 GTGCGCACCAGGAGATGAG 60.813 63.158 30.12 0.00 0.00 2.90
3227 3718 2.671963 GGTGGTTTCCCGGACTGC 60.672 66.667 0.73 0.00 0.00 4.40
3230 3721 2.359975 GGTTTCCCGGACTGCCTG 60.360 66.667 0.73 0.00 0.00 4.85
3239 3730 1.452108 GGACTGCCTGGGGAAATCG 60.452 63.158 0.00 0.00 0.00 3.34
3241 3732 2.198304 GACTGCCTGGGGAAATCGGT 62.198 60.000 0.00 0.00 0.00 4.69
3377 3875 1.066858 GTGTTCTTGAGGCCGAGATGA 60.067 52.381 0.00 0.00 33.03 2.92
3378 3876 1.205655 TGTTCTTGAGGCCGAGATGAG 59.794 52.381 0.00 0.00 33.03 2.90
3380 3878 2.079170 TCTTGAGGCCGAGATGAGAT 57.921 50.000 0.00 0.00 0.00 2.75
3381 3879 3.229697 TCTTGAGGCCGAGATGAGATA 57.770 47.619 0.00 0.00 0.00 1.98
3386 3884 2.230266 GAGGCCGAGATGAGATAGGTTC 59.770 54.545 0.00 0.00 0.00 3.62
3405 3903 4.096984 GGTTCCCTAGATGCAGAATTGTTG 59.903 45.833 0.00 0.00 0.00 3.33
3406 3904 3.889815 TCCCTAGATGCAGAATTGTTGG 58.110 45.455 0.00 0.00 0.00 3.77
3407 3905 3.523157 TCCCTAGATGCAGAATTGTTGGA 59.477 43.478 0.00 0.00 0.00 3.53
3408 3906 3.629398 CCCTAGATGCAGAATTGTTGGAC 59.371 47.826 0.00 0.00 0.00 4.02
3410 3908 1.470098 AGATGCAGAATTGTTGGACGC 59.530 47.619 0.00 0.00 0.00 5.19
3411 3909 0.168788 ATGCAGAATTGTTGGACGCG 59.831 50.000 3.53 3.53 0.00 6.01
3412 3910 1.154225 GCAGAATTGTTGGACGCGG 60.154 57.895 12.47 0.00 0.00 6.46
3413 3911 1.154225 CAGAATTGTTGGACGCGGC 60.154 57.895 12.47 7.53 0.00 6.53
3415 3913 0.036765 AGAATTGTTGGACGCGGCTA 60.037 50.000 13.91 0.76 0.00 3.93
3416 3914 0.373716 GAATTGTTGGACGCGGCTAG 59.626 55.000 13.91 0.00 0.00 3.42
3417 3915 0.036765 AATTGTTGGACGCGGCTAGA 60.037 50.000 13.91 0.00 0.00 2.43
3419 3917 1.529152 TTGTTGGACGCGGCTAGAGA 61.529 55.000 13.91 0.00 0.00 3.10
3420 3918 1.226717 GTTGGACGCGGCTAGAGAG 60.227 63.158 13.91 0.00 0.00 3.20
3421 3919 1.378119 TTGGACGCGGCTAGAGAGA 60.378 57.895 13.91 0.00 0.00 3.10
3422 3920 1.377366 TTGGACGCGGCTAGAGAGAG 61.377 60.000 13.91 0.00 0.00 3.20
3423 3921 2.330041 GACGCGGCTAGAGAGAGC 59.670 66.667 12.47 0.00 42.05 4.09
3442 3940 2.713154 GCGGCACTCGTTTGTTGT 59.287 55.556 0.00 0.00 41.72 3.32
3443 3941 1.368850 GCGGCACTCGTTTGTTGTC 60.369 57.895 0.00 0.00 41.72 3.18
3444 3942 1.772063 GCGGCACTCGTTTGTTGTCT 61.772 55.000 0.00 0.00 41.72 3.41
3446 3944 1.455786 CGGCACTCGTTTGTTGTCTAG 59.544 52.381 0.00 0.00 0.00 2.43
3448 3946 2.731976 GGCACTCGTTTGTTGTCTAGAG 59.268 50.000 0.00 0.00 0.00 2.43
3449 3947 2.155924 GCACTCGTTTGTTGTCTAGAGC 59.844 50.000 0.00 0.00 0.00 4.09
3451 3949 3.182572 CACTCGTTTGTTGTCTAGAGCAC 59.817 47.826 0.00 0.00 0.00 4.40
3453 3951 3.120792 TCGTTTGTTGTCTAGAGCACAC 58.879 45.455 3.79 2.01 0.00 3.82
3454 3952 2.863740 CGTTTGTTGTCTAGAGCACACA 59.136 45.455 3.79 5.39 0.00 3.72
3455 3953 3.308595 CGTTTGTTGTCTAGAGCACACAA 59.691 43.478 3.79 9.56 0.00 3.33
3457 3955 5.444122 GTTTGTTGTCTAGAGCACACAATC 58.556 41.667 3.79 8.37 32.80 2.67
3461 3959 4.983671 TGTCTAGAGCACACAATCGTAT 57.016 40.909 0.00 0.00 0.00 3.06
3463 3961 6.635030 TGTCTAGAGCACACAATCGTATAT 57.365 37.500 0.00 0.00 0.00 0.86
3464 3962 7.039313 TGTCTAGAGCACACAATCGTATATT 57.961 36.000 0.00 0.00 0.00 1.28
3465 3963 6.918022 TGTCTAGAGCACACAATCGTATATTG 59.082 38.462 0.00 0.00 35.29 1.90
3467 3965 8.074370 GTCTAGAGCACACAATCGTATATTGTA 58.926 37.037 3.24 0.00 39.94 2.41
3468 3966 8.793592 TCTAGAGCACACAATCGTATATTGTAT 58.206 33.333 3.24 0.00 39.94 2.29
3469 3967 9.411801 CTAGAGCACACAATCGTATATTGTATT 57.588 33.333 3.24 0.00 39.94 1.89
3471 3969 7.385205 AGAGCACACAATCGTATATTGTATTCC 59.615 37.037 3.24 0.00 39.94 3.01
3472 3970 6.426937 AGCACACAATCGTATATTGTATTCCC 59.573 38.462 3.24 0.00 39.94 3.97
3473 3971 6.426937 GCACACAATCGTATATTGTATTCCCT 59.573 38.462 3.24 0.00 39.94 4.20
3474 3972 7.360101 GCACACAATCGTATATTGTATTCCCTC 60.360 40.741 3.24 0.00 39.94 4.30
3475 3973 7.872993 CACACAATCGTATATTGTATTCCCTCT 59.127 37.037 3.24 0.00 39.94 3.69
3476 3974 7.872993 ACACAATCGTATATTGTATTCCCTCTG 59.127 37.037 3.24 0.00 39.94 3.35
3477 3975 7.872993 CACAATCGTATATTGTATTCCCTCTGT 59.127 37.037 3.24 0.00 39.94 3.41
3479 3977 9.273016 CAATCGTATATTGTATTCCCTCTGTTT 57.727 33.333 0.00 0.00 0.00 2.83
3480 3978 9.847224 AATCGTATATTGTATTCCCTCTGTTTT 57.153 29.630 0.00 0.00 0.00 2.43
3481 3979 9.847224 ATCGTATATTGTATTCCCTCTGTTTTT 57.153 29.630 0.00 0.00 0.00 1.94
3487 3985 7.979444 TTGTATTCCCTCTGTTTTTAGTCTG 57.021 36.000 0.00 0.00 0.00 3.51
3488 3986 7.074653 TGTATTCCCTCTGTTTTTAGTCTGT 57.925 36.000 0.00 0.00 0.00 3.41
3489 3987 8.197592 TGTATTCCCTCTGTTTTTAGTCTGTA 57.802 34.615 0.00 0.00 0.00 2.74
3490 3988 8.822805 TGTATTCCCTCTGTTTTTAGTCTGTAT 58.177 33.333 0.00 0.00 0.00 2.29
3508 4006 9.427821 AGTCTGTATATAAGATTTGGTCAGAGT 57.572 33.333 0.00 0.00 31.60 3.24
3509 4007 9.685828 GTCTGTATATAAGATTTGGTCAGAGTC 57.314 37.037 0.00 0.00 31.60 3.36
3510 4008 9.421399 TCTGTATATAAGATTTGGTCAGAGTCA 57.579 33.333 0.00 0.00 0.00 3.41
3516 4014 8.697507 ATAAGATTTGGTCAGAGTCAAACTTT 57.302 30.769 0.00 8.85 35.97 2.66
3517 4015 9.793259 ATAAGATTTGGTCAGAGTCAAACTTTA 57.207 29.630 0.00 9.97 35.97 1.85
3518 4016 8.697507 AAGATTTGGTCAGAGTCAAACTTTAT 57.302 30.769 0.00 0.00 35.97 1.40
3519 4017 9.793259 AAGATTTGGTCAGAGTCAAACTTTATA 57.207 29.630 0.00 0.00 35.97 0.98
3571 4069 6.577103 TGAGTGCCTAGAACTCATTTAGATG 58.423 40.000 18.84 0.00 46.96 2.90
3572 4070 6.381133 TGAGTGCCTAGAACTCATTTAGATGA 59.619 38.462 18.84 0.00 46.96 2.92
3595 4093 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
3597 4095 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
3598 4096 9.347240 AGATATAATTTGGTCTCATTCACCTTG 57.653 33.333 0.00 0.00 34.66 3.61
3599 4097 9.342308 GATATAATTTGGTCTCATTCACCTTGA 57.658 33.333 0.00 0.00 34.66 3.02
3600 4098 9.699410 ATATAATTTGGTCTCATTCACCTTGAA 57.301 29.630 0.00 0.00 41.09 2.69
3601 4099 6.729690 AATTTGGTCTCATTCACCTTGAAA 57.270 33.333 0.00 0.00 40.12 2.69
3602 4100 6.729690 ATTTGGTCTCATTCACCTTGAAAA 57.270 33.333 0.00 0.00 40.12 2.29
3603 4101 5.514274 TTGGTCTCATTCACCTTGAAAAC 57.486 39.130 0.00 0.00 40.12 2.43
3604 4102 4.531854 TGGTCTCATTCACCTTGAAAACA 58.468 39.130 0.00 0.00 40.12 2.83
3605 4103 4.952957 TGGTCTCATTCACCTTGAAAACAA 59.047 37.500 0.00 0.00 40.12 2.83
3607 4105 6.071108 TGGTCTCATTCACCTTGAAAACAAAA 60.071 34.615 0.00 0.00 40.12 2.44
3609 4107 7.201522 GGTCTCATTCACCTTGAAAACAAAAAC 60.202 37.037 0.00 0.00 40.12 2.43
3611 4109 7.545265 TCTCATTCACCTTGAAAACAAAAACAG 59.455 33.333 0.00 0.00 40.12 3.16
3612 4110 7.382110 TCATTCACCTTGAAAACAAAAACAGA 58.618 30.769 0.00 0.00 40.12 3.41
3615 4113 8.696410 TTCACCTTGAAAACAAAAACAGATAC 57.304 30.769 0.00 0.00 32.71 2.24
3616 4114 7.831753 TCACCTTGAAAACAAAAACAGATACA 58.168 30.769 0.00 0.00 0.00 2.29
3617 4115 8.307483 TCACCTTGAAAACAAAAACAGATACAA 58.693 29.630 0.00 0.00 0.00 2.41
3618 4116 8.379902 CACCTTGAAAACAAAAACAGATACAAC 58.620 33.333 0.00 0.00 0.00 3.32
3619 4117 7.547722 ACCTTGAAAACAAAAACAGATACAACC 59.452 33.333 0.00 0.00 0.00 3.77
3620 4118 7.011016 CCTTGAAAACAAAAACAGATACAACCC 59.989 37.037 0.00 0.00 0.00 4.11
3621 4119 6.936279 TGAAAACAAAAACAGATACAACCCA 58.064 32.000 0.00 0.00 0.00 4.51
3623 4121 4.561735 ACAAAAACAGATACAACCCACG 57.438 40.909 0.00 0.00 0.00 4.94
3624 4122 3.949113 ACAAAAACAGATACAACCCACGT 59.051 39.130 0.00 0.00 0.00 4.49
3625 4123 4.035909 ACAAAAACAGATACAACCCACGTC 59.964 41.667 0.00 0.00 0.00 4.34
3626 4124 3.478857 AAACAGATACAACCCACGTCA 57.521 42.857 0.00 0.00 0.00 4.35
3627 4125 2.743636 ACAGATACAACCCACGTCAG 57.256 50.000 0.00 0.00 0.00 3.51
3628 4126 1.337823 ACAGATACAACCCACGTCAGC 60.338 52.381 0.00 0.00 0.00 4.26
3630 4128 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
3631 4129 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
3632 4130 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
3633 4131 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
3634 4132 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
3635 4133 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
3637 4135 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
3639 4137 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
3640 4138 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
3641 4139 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
3642 4140 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
3643 4141 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
3645 4143 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
3646 4144 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
3647 4145 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
3648 4146 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
3649 4147 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
3650 4148 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
3651 4149 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
3652 4150 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
3653 4151 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
3654 4152 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
3655 4153 4.928020 CACGCATCTTATAGCATCACATCT 59.072 41.667 0.00 0.00 0.00 2.90
3656 4154 6.095377 CACGCATCTTATAGCATCACATCTA 58.905 40.000 0.00 0.00 0.00 1.98
3658 4156 7.277319 CACGCATCTTATAGCATCACATCTAAT 59.723 37.037 0.00 0.00 0.00 1.73
3659 4157 7.277319 ACGCATCTTATAGCATCACATCTAATG 59.723 37.037 0.00 0.00 0.00 1.90
3660 4158 7.254353 CGCATCTTATAGCATCACATCTAATGG 60.254 40.741 0.00 0.00 33.60 3.16
3661 4159 7.466996 GCATCTTATAGCATCACATCTAATGGC 60.467 40.741 0.00 0.00 33.60 4.40
3662 4160 7.250032 TCTTATAGCATCACATCTAATGGCT 57.750 36.000 0.00 0.00 33.60 4.75
3664 4162 8.985922 TCTTATAGCATCACATCTAATGGCTAT 58.014 33.333 0.00 0.00 32.32 2.97
3670 4168 8.790718 AGCATCACATCTAATGGCTATAAAAAG 58.209 33.333 0.00 0.00 33.60 2.27
3671 4169 8.571336 GCATCACATCTAATGGCTATAAAAAGT 58.429 33.333 0.00 0.00 33.60 2.66
3673 4171 9.851686 ATCACATCTAATGGCTATAAAAAGTGA 57.148 29.630 9.00 9.00 34.74 3.41
3681 4179 7.573968 ATGGCTATAAAAAGTGAATGAGACC 57.426 36.000 0.00 0.00 0.00 3.85
3683 4181 6.945435 TGGCTATAAAAAGTGAATGAGACCAA 59.055 34.615 0.00 0.00 0.00 3.67
3686 4184 8.515414 GCTATAAAAAGTGAATGAGACCAAACT 58.485 33.333 0.00 0.00 0.00 2.66
3692 4190 9.965902 AAAAGTGAATGAGACCAAACTATATCT 57.034 29.630 0.00 0.00 0.00 1.98
3721 4219 8.627487 CTAGATGAGTTCTAGCAAAACTGTAG 57.373 38.462 0.32 0.00 45.63 2.74
3858 8124 9.598517 TCAAAGCAAATAAAGTTTGACTTTCAT 57.401 25.926 9.15 0.00 44.47 2.57
3900 8166 6.774170 ACTAAAAAGAAACGGTGGGAGTAATT 59.226 34.615 0.00 0.00 0.00 1.40
3901 8167 7.938490 ACTAAAAAGAAACGGTGGGAGTAATTA 59.062 33.333 0.00 0.00 0.00 1.40
3902 8168 6.564709 AAAAGAAACGGTGGGAGTAATTAC 57.435 37.500 7.57 7.57 0.00 1.89
3903 8169 4.895668 AGAAACGGTGGGAGTAATTACA 57.104 40.909 17.65 0.00 0.00 2.41
3904 8170 5.431179 AGAAACGGTGGGAGTAATTACAT 57.569 39.130 17.65 3.10 0.00 2.29
3905 8171 5.183228 AGAAACGGTGGGAGTAATTACATG 58.817 41.667 17.65 0.00 0.00 3.21
3906 8172 4.563140 AACGGTGGGAGTAATTACATGT 57.437 40.909 17.65 2.69 0.00 3.21
3907 8173 4.563140 ACGGTGGGAGTAATTACATGTT 57.437 40.909 17.65 0.00 0.00 2.71
3909 8175 4.224370 ACGGTGGGAGTAATTACATGTTCT 59.776 41.667 17.65 0.00 0.00 3.01
3911 8177 5.064707 CGGTGGGAGTAATTACATGTTCTTG 59.935 44.000 17.65 0.00 0.00 3.02
3914 8180 6.430000 GTGGGAGTAATTACATGTTCTTGTGT 59.570 38.462 17.65 0.00 0.00 3.72
3915 8181 7.604927 GTGGGAGTAATTACATGTTCTTGTGTA 59.395 37.037 17.65 0.00 0.00 2.90
3916 8182 7.604927 TGGGAGTAATTACATGTTCTTGTGTAC 59.395 37.037 17.65 0.00 31.05 2.90
3917 8183 7.604927 GGGAGTAATTACATGTTCTTGTGTACA 59.395 37.037 17.65 0.00 31.05 2.90
3918 8184 8.995220 GGAGTAATTACATGTTCTTGTGTACAA 58.005 33.333 17.65 0.00 31.05 2.41
3920 8186 9.555727 AGTAATTACATGTTCTTGTGTACAACT 57.444 29.630 17.65 0.00 31.05 3.16
3921 8187 9.594038 GTAATTACATGTTCTTGTGTACAACTG 57.406 33.333 2.30 0.00 31.05 3.16
3922 8188 7.801716 ATTACATGTTCTTGTGTACAACTGT 57.198 32.000 2.30 1.73 31.05 3.55
3924 8190 5.428253 ACATGTTCTTGTGTACAACTGTCT 58.572 37.500 0.00 0.00 0.00 3.41
3926 8192 6.479001 ACATGTTCTTGTGTACAACTGTCTAC 59.521 38.462 0.00 0.00 0.00 2.59
3927 8193 5.968254 TGTTCTTGTGTACAACTGTCTACA 58.032 37.500 0.00 0.00 0.00 2.74
3929 8195 5.847111 TCTTGTGTACAACTGTCTACACT 57.153 39.130 20.59 0.00 42.20 3.55
3930 8196 6.947644 TCTTGTGTACAACTGTCTACACTA 57.052 37.500 20.59 15.50 42.20 2.74
3931 8197 6.967135 TCTTGTGTACAACTGTCTACACTAG 58.033 40.000 21.12 21.12 42.90 2.57
3932 8198 6.769341 TCTTGTGTACAACTGTCTACACTAGA 59.231 38.462 23.37 23.37 45.50 2.43
3933 8199 6.947644 TGTGTACAACTGTCTACACTAGAA 57.052 37.500 20.59 6.43 42.20 2.10
3934 8200 7.337480 TGTGTACAACTGTCTACACTAGAAA 57.663 36.000 20.59 6.18 42.20 2.52
3935 8201 7.774134 TGTGTACAACTGTCTACACTAGAAAA 58.226 34.615 20.59 5.70 42.20 2.29
3936 8202 8.252417 TGTGTACAACTGTCTACACTAGAAAAA 58.748 33.333 20.59 5.22 42.20 1.94
3937 8203 8.753175 GTGTACAACTGTCTACACTAGAAAAAG 58.247 37.037 16.04 0.00 39.55 2.27
3938 8204 8.689061 TGTACAACTGTCTACACTAGAAAAAGA 58.311 33.333 0.00 0.00 36.40 2.52
3939 8205 9.525409 GTACAACTGTCTACACTAGAAAAAGAA 57.475 33.333 0.00 0.00 36.40 2.52
3941 8207 9.614792 ACAACTGTCTACACTAGAAAAAGAAAT 57.385 29.630 0.00 0.00 36.40 2.17
3951 8217 8.527810 ACACTAGAAAAAGAAATTGTTTGACCA 58.472 29.630 0.00 0.00 0.00 4.02
3952 8218 8.807581 CACTAGAAAAAGAAATTGTTTGACCAC 58.192 33.333 0.00 0.00 0.00 4.16
3953 8219 7.979537 ACTAGAAAAAGAAATTGTTTGACCACC 59.020 33.333 0.00 0.00 0.00 4.61
3954 8220 6.112734 AGAAAAAGAAATTGTTTGACCACCC 58.887 36.000 0.00 0.00 0.00 4.61
3955 8221 4.415881 AAAGAAATTGTTTGACCACCCC 57.584 40.909 0.00 0.00 0.00 4.95
3956 8222 1.960689 AGAAATTGTTTGACCACCCCG 59.039 47.619 0.00 0.00 0.00 5.73
3957 8223 1.684450 GAAATTGTTTGACCACCCCGT 59.316 47.619 0.00 0.00 0.00 5.28
3958 8224 2.660670 AATTGTTTGACCACCCCGTA 57.339 45.000 0.00 0.00 0.00 4.02
3959 8225 2.194201 ATTGTTTGACCACCCCGTAG 57.806 50.000 0.00 0.00 0.00 3.51
3973 8239 1.497991 CCGTAGGCACATGGTTATCG 58.502 55.000 0.00 0.00 46.14 2.92
3975 8241 2.288825 CCGTAGGCACATGGTTATCGAT 60.289 50.000 2.16 2.16 46.14 3.59
3976 8242 2.731451 CGTAGGCACATGGTTATCGATG 59.269 50.000 8.54 0.00 36.18 3.84
3977 8243 2.260844 AGGCACATGGTTATCGATGG 57.739 50.000 8.54 0.00 34.77 3.51
3979 8245 2.172505 AGGCACATGGTTATCGATGGAA 59.827 45.455 8.54 0.00 34.77 3.53
3980 8246 3.149196 GGCACATGGTTATCGATGGAAT 58.851 45.455 8.54 0.00 34.77 3.01
3981 8247 3.189287 GGCACATGGTTATCGATGGAATC 59.811 47.826 8.54 0.00 40.89 2.52
3982 8248 3.814842 GCACATGGTTATCGATGGAATCA 59.185 43.478 8.54 1.85 45.97 2.57
3983 8249 4.083643 GCACATGGTTATCGATGGAATCAG 60.084 45.833 8.54 0.00 45.97 2.90
3984 8250 4.067896 ACATGGTTATCGATGGAATCAGC 58.932 43.478 8.54 0.00 45.97 4.26
3985 8251 3.126001 TGGTTATCGATGGAATCAGCC 57.874 47.619 8.54 0.00 45.97 4.85
3987 8253 3.901222 TGGTTATCGATGGAATCAGCCTA 59.099 43.478 8.54 0.00 45.97 3.93
3988 8254 4.346709 TGGTTATCGATGGAATCAGCCTAA 59.653 41.667 8.54 0.00 45.97 2.69
3990 8256 5.940470 GGTTATCGATGGAATCAGCCTAAAT 59.060 40.000 8.54 0.00 45.97 1.40
3991 8257 6.092807 GGTTATCGATGGAATCAGCCTAAATC 59.907 42.308 8.54 0.00 45.97 2.17
3992 8258 4.008074 TCGATGGAATCAGCCTAAATCC 57.992 45.455 0.00 0.00 45.97 3.01
3993 8259 3.648067 TCGATGGAATCAGCCTAAATCCT 59.352 43.478 0.00 0.00 45.97 3.24
3994 8260 3.750130 CGATGGAATCAGCCTAAATCCTG 59.250 47.826 0.00 0.00 45.97 3.86
3995 8261 4.723309 GATGGAATCAGCCTAAATCCTGT 58.277 43.478 0.00 0.00 44.70 4.00
3996 8262 4.156455 TGGAATCAGCCTAAATCCTGTC 57.844 45.455 0.00 0.00 0.00 3.51
3998 8264 3.879892 GGAATCAGCCTAAATCCTGTCAC 59.120 47.826 0.00 0.00 0.00 3.67
3999 8265 4.517285 GAATCAGCCTAAATCCTGTCACA 58.483 43.478 0.00 0.00 0.00 3.58
4000 8266 3.334583 TCAGCCTAAATCCTGTCACAC 57.665 47.619 0.00 0.00 0.00 3.82
4001 8267 2.002586 CAGCCTAAATCCTGTCACACG 58.997 52.381 0.00 0.00 0.00 4.49
4003 8269 1.732259 GCCTAAATCCTGTCACACGTG 59.268 52.381 15.48 15.48 0.00 4.49
4004 8270 1.732259 CCTAAATCCTGTCACACGTGC 59.268 52.381 17.22 0.00 0.00 5.34
4005 8271 2.412870 CTAAATCCTGTCACACGTGCA 58.587 47.619 17.22 4.69 0.00 4.57
4007 8273 1.896220 AATCCTGTCACACGTGCATT 58.104 45.000 17.22 0.00 0.00 3.56
4008 8274 1.896220 ATCCTGTCACACGTGCATTT 58.104 45.000 17.22 0.00 0.00 2.32
4009 8275 2.535012 TCCTGTCACACGTGCATTTA 57.465 45.000 17.22 0.00 0.00 1.40
4010 8276 3.052455 TCCTGTCACACGTGCATTTAT 57.948 42.857 17.22 0.00 0.00 1.40
4012 8278 3.818210 TCCTGTCACACGTGCATTTATTT 59.182 39.130 17.22 0.00 0.00 1.40
4013 8279 4.998033 TCCTGTCACACGTGCATTTATTTA 59.002 37.500 17.22 0.00 0.00 1.40
4014 8280 5.121611 TCCTGTCACACGTGCATTTATTTAG 59.878 40.000 17.22 2.11 0.00 1.85
4015 8281 5.289917 TGTCACACGTGCATTTATTTAGG 57.710 39.130 17.22 0.00 0.00 2.69
4018 8284 4.762765 TCACACGTGCATTTATTTAGGGTT 59.237 37.500 17.22 0.00 0.00 4.11
4019 8285 5.092781 CACACGTGCATTTATTTAGGGTTC 58.907 41.667 17.22 0.00 0.00 3.62
4020 8286 4.762765 ACACGTGCATTTATTTAGGGTTCA 59.237 37.500 17.22 0.00 0.00 3.18
4022 8288 6.153067 CACGTGCATTTATTTAGGGTTCAAA 58.847 36.000 0.82 0.00 0.00 2.69
4023 8289 6.642950 CACGTGCATTTATTTAGGGTTCAAAA 59.357 34.615 0.82 0.00 0.00 2.44
4024 8290 7.169982 CACGTGCATTTATTTAGGGTTCAAAAA 59.830 33.333 0.82 0.00 0.00 1.94
4025 8291 7.383843 ACGTGCATTTATTTAGGGTTCAAAAAG 59.616 33.333 0.00 0.00 0.00 2.27
4026 8292 7.383843 CGTGCATTTATTTAGGGTTCAAAAAGT 59.616 33.333 0.00 0.00 0.00 2.66
4028 8294 9.050601 TGCATTTATTTAGGGTTCAAAAAGTTG 57.949 29.630 0.00 0.00 35.95 3.16
4035 8301 8.481974 TTTAGGGTTCAAAAAGTTGTAAAAGC 57.518 30.769 0.00 0.00 36.07 3.51
4036 8302 5.424757 AGGGTTCAAAAAGTTGTAAAAGCC 58.575 37.500 0.00 0.00 37.10 4.35
4037 8303 5.046231 AGGGTTCAAAAAGTTGTAAAAGCCA 60.046 36.000 9.87 0.00 38.31 4.75
4038 8304 5.820423 GGGTTCAAAAAGTTGTAAAAGCCAT 59.180 36.000 4.46 0.00 36.95 4.40
4039 8305 6.987404 GGGTTCAAAAAGTTGTAAAAGCCATA 59.013 34.615 4.46 0.00 36.95 2.74
4070 8336 8.633075 TTATTCAAGCATCGAAATTCATTTCC 57.367 30.769 6.68 0.00 42.34 3.13
4072 8338 4.155826 TCAAGCATCGAAATTCATTTCCGT 59.844 37.500 6.68 0.00 42.34 4.69
4073 8339 4.701956 AGCATCGAAATTCATTTCCGTT 57.298 36.364 6.68 0.00 42.34 4.44
4074 8340 5.059404 AGCATCGAAATTCATTTCCGTTT 57.941 34.783 6.68 0.00 42.34 3.60
4077 10312 5.344665 GCATCGAAATTCATTTCCGTTTTCA 59.655 36.000 6.68 0.00 42.34 2.69
4079 10314 5.216648 TCGAAATTCATTTCCGTTTTCACC 58.783 37.500 6.68 0.00 42.34 4.02
4097 10332 1.349259 CCGCCAGGTTTCTAACGACG 61.349 60.000 0.00 0.00 0.00 5.12
4099 10334 1.347320 GCCAGGTTTCTAACGACGAG 58.653 55.000 0.00 0.00 0.00 4.18
4102 10337 2.985139 CCAGGTTTCTAACGACGAGTTC 59.015 50.000 0.00 0.00 43.06 3.01
4103 10338 3.305199 CCAGGTTTCTAACGACGAGTTCT 60.305 47.826 0.00 0.00 43.06 3.01
4104 10339 4.296690 CAGGTTTCTAACGACGAGTTCTT 58.703 43.478 0.00 0.00 43.06 2.52
4105 10340 4.382160 CAGGTTTCTAACGACGAGTTCTTC 59.618 45.833 0.00 0.00 43.06 2.87
4106 10341 4.037208 AGGTTTCTAACGACGAGTTCTTCA 59.963 41.667 0.00 0.00 43.06 3.02
4107 10342 4.741676 GGTTTCTAACGACGAGTTCTTCAA 59.258 41.667 0.00 0.00 43.06 2.69
4108 10343 5.232838 GGTTTCTAACGACGAGTTCTTCAAA 59.767 40.000 0.00 0.00 43.06 2.69
4110 10345 5.878261 TCTAACGACGAGTTCTTCAAAAC 57.122 39.130 0.00 0.00 43.06 2.43
4111 10346 5.585390 TCTAACGACGAGTTCTTCAAAACT 58.415 37.500 0.00 0.00 43.06 2.66
4113 10348 5.885020 AACGACGAGTTCTTCAAAACTAG 57.115 39.130 0.00 0.00 39.16 2.57
4114 10349 5.179045 ACGACGAGTTCTTCAAAACTAGA 57.821 39.130 0.00 0.00 39.55 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 88 1.739196 GGTGTAAAGCCGGACGGAC 60.739 63.158 15.99 6.01 37.50 4.79
82 90 2.435410 GGGTGTAAAGCCGGACGG 60.435 66.667 5.05 6.35 38.57 4.79
83 91 1.740296 CAGGGTGTAAAGCCGGACG 60.740 63.158 5.05 0.00 0.00 4.79
132 140 0.806868 TCAGTATCGTTCGTTCGGCT 59.193 50.000 2.85 0.00 0.00 5.52
248 264 1.544724 GGTGATGCCTTGCTTACCAA 58.455 50.000 0.00 0.00 31.04 3.67
316 340 3.225104 CAACCACTAGCCATGCCATAAT 58.775 45.455 0.00 0.00 0.00 1.28
318 342 1.133823 CCAACCACTAGCCATGCCATA 60.134 52.381 0.00 0.00 0.00 2.74
345 369 5.789643 TTATTTTCAGCTGCAAAAGGTCT 57.210 34.783 15.43 1.66 33.14 3.85
372 397 4.343814 GGGAACAAATGAACCTTCTTGGAA 59.656 41.667 0.00 0.00 39.71 3.53
373 398 3.895041 GGGAACAAATGAACCTTCTTGGA 59.105 43.478 0.00 0.00 39.71 3.53
540 579 2.823747 ACTATTCCACGCAGTCACAGTA 59.176 45.455 0.00 0.00 41.61 2.74
541 580 1.618837 ACTATTCCACGCAGTCACAGT 59.381 47.619 0.00 0.00 41.61 3.55
542 581 2.370281 ACTATTCCACGCAGTCACAG 57.630 50.000 0.00 0.00 41.61 3.66
543 582 2.416836 GCTACTATTCCACGCAGTCACA 60.417 50.000 0.00 0.00 41.61 3.58
544 583 2.194271 GCTACTATTCCACGCAGTCAC 58.806 52.381 0.00 0.00 41.61 3.67
545 584 1.202256 CGCTACTATTCCACGCAGTCA 60.202 52.381 0.00 0.00 41.61 3.41
581 620 1.996898 TGGTCACAAGTTATTAGCGCG 59.003 47.619 0.00 0.00 0.00 6.86
635 675 5.678583 CCTGCAGAGGAGAATATCAAAAGA 58.321 41.667 17.39 0.00 42.93 2.52
708 748 0.453282 GAACGTGCGTGCTACGAGTA 60.453 55.000 18.61 0.00 46.05 2.59
712 752 2.510308 GAACGAACGTGCGTGCTACG 62.510 60.000 24.81 12.79 44.86 3.51
714 754 1.299240 TGAACGAACGTGCGTGCTA 60.299 52.632 27.19 11.50 44.86 3.49
717 757 2.128637 CGTGAACGAACGTGCGTG 60.129 61.111 24.81 5.97 44.86 5.34
719 759 2.983977 CTCCGTGAACGAACGTGCG 61.984 63.158 16.06 16.06 42.01 5.34
926 1327 0.705253 TCTCTTTCTCTCCCCCGTCT 59.295 55.000 0.00 0.00 0.00 4.18
928 1329 0.966370 CGTCTCTTTCTCTCCCCCGT 60.966 60.000 0.00 0.00 0.00 5.28
930 1331 0.818938 GTCGTCTCTTTCTCTCCCCC 59.181 60.000 0.00 0.00 0.00 5.40
977 1381 3.865830 GCTAGTTCGCCTTGGCGC 61.866 66.667 26.94 15.19 0.00 6.53
979 1383 2.109126 CCTGCTAGTTCGCCTTGGC 61.109 63.158 0.75 0.75 0.00 4.52
987 1391 1.152881 CCCCATGGCCTGCTAGTTC 60.153 63.158 6.09 0.00 0.00 3.01
1174 1590 3.379445 CGGAGGTGCACGTACCCT 61.379 66.667 15.91 4.18 41.83 4.34
1198 1621 3.773119 GAGGGACAGGGACTTGTATTGTA 59.227 47.826 0.00 0.00 34.60 2.41
1200 1623 2.571653 TGAGGGACAGGGACTTGTATTG 59.428 50.000 0.00 0.00 34.60 1.90
1201 1624 2.915869 TGAGGGACAGGGACTTGTATT 58.084 47.619 0.00 0.00 34.60 1.89
1203 1626 2.225522 TGATGAGGGACAGGGACTTGTA 60.226 50.000 0.00 0.00 34.60 2.41
1204 1627 1.280457 GATGAGGGACAGGGACTTGT 58.720 55.000 0.00 0.00 34.60 3.16
1205 1628 1.279496 TGATGAGGGACAGGGACTTG 58.721 55.000 0.00 0.00 34.60 3.16
1208 1631 1.500474 TGATGATGAGGGACAGGGAC 58.500 55.000 0.00 0.00 0.00 4.46
1210 1633 3.589951 ATTTGATGATGAGGGACAGGG 57.410 47.619 0.00 0.00 0.00 4.45
1211 1634 3.887716 GGAATTTGATGATGAGGGACAGG 59.112 47.826 0.00 0.00 0.00 4.00
1212 1635 3.887716 GGGAATTTGATGATGAGGGACAG 59.112 47.826 0.00 0.00 0.00 3.51
1216 1639 3.607490 AGGGGAATTTGATGATGAGGG 57.393 47.619 0.00 0.00 0.00 4.30
1217 1640 3.069158 GCAAGGGGAATTTGATGATGAGG 59.931 47.826 0.00 0.00 0.00 3.86
1218 1641 3.958798 AGCAAGGGGAATTTGATGATGAG 59.041 43.478 0.00 0.00 0.00 2.90
1219 1642 3.702548 CAGCAAGGGGAATTTGATGATGA 59.297 43.478 0.00 0.00 42.79 2.92
1220 1643 3.449737 ACAGCAAGGGGAATTTGATGATG 59.550 43.478 9.82 0.00 42.79 3.07
1222 1645 3.173953 ACAGCAAGGGGAATTTGATGA 57.826 42.857 9.82 0.00 42.79 2.92
1223 1646 3.131046 GGTACAGCAAGGGGAATTTGATG 59.869 47.826 0.00 2.11 44.93 3.07
1245 1676 3.266376 ACACGCCGTTCGGTGTTG 61.266 61.111 24.56 20.75 45.57 3.33
1423 1866 2.152699 CGCGTACGCACAGAAGGAG 61.153 63.158 36.44 15.50 42.06 3.69
1435 1878 3.242248 ACAAATTAGAATCTCGCGCGTAC 59.758 43.478 30.98 16.52 0.00 3.67
1437 1880 2.268298 ACAAATTAGAATCTCGCGCGT 58.732 42.857 30.98 10.67 0.00 6.01
1438 1881 2.998668 ACAAATTAGAATCTCGCGCG 57.001 45.000 26.76 26.76 0.00 6.86
1469 1912 1.416813 GCCGCACTCTCTGAATGTCG 61.417 60.000 0.00 0.00 0.00 4.35
1631 2074 0.959867 TACCGTGGGATTGACGACGA 60.960 55.000 0.00 0.00 39.21 4.20
1862 2311 1.065126 CCAACCTGATGAACCTCTCCC 60.065 57.143 0.00 0.00 0.00 4.30
1916 2365 4.508124 ACTCACGAGACAGAATCACAAAAC 59.492 41.667 0.00 0.00 0.00 2.43
1929 2378 0.593618 TGTCAGCTGACTCACGAGAC 59.406 55.000 38.81 17.16 44.99 3.36
1934 2388 6.018425 CCATAACATTATGTCAGCTGACTCAC 60.018 42.308 38.81 20.25 44.99 3.51
1943 2397 6.204688 ACATTACCGCCATAACATTATGTCAG 59.795 38.462 10.06 0.00 39.04 3.51
1946 2400 6.058833 TCACATTACCGCCATAACATTATGT 58.941 36.000 10.06 0.00 39.04 2.29
1981 2442 1.597742 TCTTGGCTTGTTCACTCTGC 58.402 50.000 0.00 0.00 0.00 4.26
2096 2557 2.482490 GGAATGCCTGGTGATCATTTGC 60.482 50.000 0.00 0.46 31.30 3.68
2101 2562 0.928505 ATGGGAATGCCTGGTGATCA 59.071 50.000 0.00 0.00 0.00 2.92
2169 2630 1.123077 TATCATCGGCAAGCCTCTGT 58.877 50.000 9.73 1.17 0.00 3.41
2547 3008 3.952628 CTTCCCCTTCGGCGGTGAC 62.953 68.421 7.21 0.00 0.00 3.67
2640 3101 1.525995 CCTCCTGTTGTGTTGCCGT 60.526 57.895 0.00 0.00 0.00 5.68
2645 3106 0.179056 CACCGTCCTCCTGTTGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
2646 3107 1.335132 ACACCGTCCTCCTGTTGTGT 61.335 55.000 0.00 0.00 32.48 3.72
2663 3130 1.644437 ATCCATCCCCATTGCGGACA 61.644 55.000 0.00 0.00 36.56 4.02
2664 3131 1.151450 ATCCATCCCCATTGCGGAC 59.849 57.895 0.00 0.00 36.56 4.79
2933 3406 2.583593 GCGCAGACGTGATCCTCC 60.584 66.667 0.30 0.00 42.83 4.30
3115 3588 3.444034 TGTACTGCTGTACCAGACTGATC 59.556 47.826 25.51 3.30 46.19 2.92
3138 3611 1.341531 ACCCAAGTCTGAACTGACGAG 59.658 52.381 0.00 3.92 41.47 4.18
3227 3718 1.449601 CACGACCGATTTCCCCAGG 60.450 63.158 0.00 0.00 0.00 4.45
3230 3721 2.124860 CCCACGACCGATTTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
3352 3845 1.598130 GGCCTCAAGAACACACGCT 60.598 57.895 0.00 0.00 0.00 5.07
3386 3884 3.629398 GTCCAACAATTCTGCATCTAGGG 59.371 47.826 0.00 0.00 0.00 3.53
3405 3903 3.027292 CTCTCTCTAGCCGCGTCC 58.973 66.667 4.92 0.00 0.00 4.79
3406 3904 2.330041 GCTCTCTCTAGCCGCGTC 59.670 66.667 4.92 0.00 36.45 5.19
3412 3910 4.639171 GCCGCGGCTCTCTCTAGC 62.639 72.222 41.71 12.20 41.99 3.42
3413 3911 3.212682 TGCCGCGGCTCTCTCTAG 61.213 66.667 45.79 9.63 42.51 2.43
3423 3921 3.645975 AACAAACGAGTGCCGCGG 61.646 61.111 24.05 24.05 43.32 6.46
3424 3922 2.425124 CAACAAACGAGTGCCGCG 60.425 61.111 0.00 0.00 43.32 6.46
3425 3923 1.368850 GACAACAAACGAGTGCCGC 60.369 57.895 0.00 0.00 43.32 6.53
3427 3925 2.731976 CTCTAGACAACAAACGAGTGCC 59.268 50.000 0.00 0.00 0.00 5.01
3431 3929 3.182572 GTGTGCTCTAGACAACAAACGAG 59.817 47.826 4.66 0.00 0.00 4.18
3432 3930 3.120792 GTGTGCTCTAGACAACAAACGA 58.879 45.455 4.66 0.00 0.00 3.85
3433 3931 2.863740 TGTGTGCTCTAGACAACAAACG 59.136 45.455 4.66 0.00 28.30 3.60
3434 3932 4.875544 TTGTGTGCTCTAGACAACAAAC 57.124 40.909 4.66 2.63 37.61 2.93
3435 3933 4.211164 CGATTGTGTGCTCTAGACAACAAA 59.789 41.667 16.60 7.48 44.20 2.83
3436 3934 3.740832 CGATTGTGTGCTCTAGACAACAA 59.259 43.478 15.85 15.85 44.20 2.83
3437 3935 3.243737 ACGATTGTGTGCTCTAGACAACA 60.244 43.478 0.00 0.00 44.20 3.33
3438 3936 3.318017 ACGATTGTGTGCTCTAGACAAC 58.682 45.455 0.00 0.00 44.20 3.32
3442 3940 7.039313 ACAATATACGATTGTGTGCTCTAGA 57.961 36.000 2.24 0.00 40.37 2.43
3443 3941 8.972262 ATACAATATACGATTGTGTGCTCTAG 57.028 34.615 12.12 0.00 41.73 2.43
3444 3942 9.406828 GAATACAATATACGATTGTGTGCTCTA 57.593 33.333 12.12 0.00 41.73 2.43
3446 3944 7.360101 GGGAATACAATATACGATTGTGTGCTC 60.360 40.741 12.12 1.87 41.73 4.26
3448 3946 6.426937 AGGGAATACAATATACGATTGTGTGC 59.573 38.462 12.12 5.17 41.73 4.57
3449 3947 7.872993 AGAGGGAATACAATATACGATTGTGTG 59.127 37.037 12.12 0.00 41.73 3.82
3451 3949 7.872993 ACAGAGGGAATACAATATACGATTGTG 59.127 37.037 12.12 0.00 41.73 3.33
3453 3951 8.833231 AACAGAGGGAATACAATATACGATTG 57.167 34.615 0.00 0.00 35.29 2.67
3454 3952 9.847224 AAAACAGAGGGAATACAATATACGATT 57.153 29.630 0.00 0.00 0.00 3.34
3455 3953 9.847224 AAAAACAGAGGGAATACAATATACGAT 57.153 29.630 0.00 0.00 0.00 3.73
3461 3959 9.667107 CAGACTAAAAACAGAGGGAATACAATA 57.333 33.333 0.00 0.00 0.00 1.90
3463 3961 7.514721 ACAGACTAAAAACAGAGGGAATACAA 58.485 34.615 0.00 0.00 0.00 2.41
3464 3962 7.074653 ACAGACTAAAAACAGAGGGAATACA 57.925 36.000 0.00 0.00 0.00 2.29
3482 3980 9.427821 ACTCTGACCAAATCTTATATACAGACT 57.572 33.333 0.00 0.00 0.00 3.24
3483 3981 9.685828 GACTCTGACCAAATCTTATATACAGAC 57.314 37.037 0.00 0.00 0.00 3.51
3489 3987 9.965902 AAGTTTGACTCTGACCAAATCTTATAT 57.034 29.630 0.00 0.00 35.14 0.86
3490 3988 9.793259 AAAGTTTGACTCTGACCAAATCTTATA 57.207 29.630 0.00 0.00 35.14 0.98
3492 3990 9.793259 ATAAAGTTTGACTCTGACCAAATCTTA 57.207 29.630 0.00 0.00 35.14 2.10
3493 3991 8.697507 ATAAAGTTTGACTCTGACCAAATCTT 57.302 30.769 0.00 0.00 35.14 2.40
3494 3992 9.793259 TTATAAAGTTTGACTCTGACCAAATCT 57.207 29.630 0.00 0.00 35.14 2.40
3498 3996 8.974060 ACTTTATAAAGTTTGACTCTGACCAA 57.026 30.769 22.49 0.00 46.52 3.67
3541 4039 5.036117 TGAGTTCTAGGCACTCACTTTTT 57.964 39.130 17.22 0.00 44.66 1.94
3548 4046 6.810911 TCATCTAAATGAGTTCTAGGCACTC 58.189 40.000 13.40 13.40 37.09 3.51
3571 4069 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
3572 4070 9.347240 CAAGGTGAATGAGACCAAATTATATCT 57.653 33.333 0.00 0.00 35.76 1.98
3573 4071 9.342308 TCAAGGTGAATGAGACCAAATTATATC 57.658 33.333 0.00 0.00 35.76 1.63
3574 4072 9.699410 TTCAAGGTGAATGAGACCAAATTATAT 57.301 29.630 0.00 0.00 35.76 0.86
3575 4073 9.527157 TTTCAAGGTGAATGAGACCAAATTATA 57.473 29.630 0.00 0.00 36.11 0.98
3576 4074 8.421249 TTTCAAGGTGAATGAGACCAAATTAT 57.579 30.769 0.00 0.00 36.11 1.28
3578 4076 6.729690 TTTCAAGGTGAATGAGACCAAATT 57.270 33.333 0.00 0.00 36.11 1.82
3579 4077 6.098124 TGTTTTCAAGGTGAATGAGACCAAAT 59.902 34.615 0.00 0.00 36.11 2.32
3580 4078 5.420421 TGTTTTCAAGGTGAATGAGACCAAA 59.580 36.000 0.00 0.00 36.11 3.28
3582 4080 4.531854 TGTTTTCAAGGTGAATGAGACCA 58.468 39.130 0.00 0.00 36.11 4.02
3583 4081 5.514274 TTGTTTTCAAGGTGAATGAGACC 57.486 39.130 0.00 0.00 36.11 3.85
3584 4082 7.330700 TGTTTTTGTTTTCAAGGTGAATGAGAC 59.669 33.333 0.00 0.00 41.09 3.36
3585 4083 7.382110 TGTTTTTGTTTTCAAGGTGAATGAGA 58.618 30.769 0.00 0.00 41.09 3.27
3586 4084 7.545265 TCTGTTTTTGTTTTCAAGGTGAATGAG 59.455 33.333 0.00 0.00 41.09 2.90
3587 4085 7.382110 TCTGTTTTTGTTTTCAAGGTGAATGA 58.618 30.769 0.00 0.00 41.09 2.57
3588 4086 7.593875 TCTGTTTTTGTTTTCAAGGTGAATG 57.406 32.000 0.00 0.00 41.09 2.67
3591 4089 7.831753 TGTATCTGTTTTTGTTTTCAAGGTGA 58.168 30.769 0.00 0.00 41.09 4.02
3592 4090 8.379902 GTTGTATCTGTTTTTGTTTTCAAGGTG 58.620 33.333 0.00 0.00 41.09 4.00
3593 4091 7.547722 GGTTGTATCTGTTTTTGTTTTCAAGGT 59.452 33.333 0.00 0.00 41.09 3.50
3594 4092 7.011016 GGGTTGTATCTGTTTTTGTTTTCAAGG 59.989 37.037 0.00 0.00 41.09 3.61
3595 4093 7.547370 TGGGTTGTATCTGTTTTTGTTTTCAAG 59.453 33.333 0.00 0.00 41.09 3.02
3597 4095 6.814146 GTGGGTTGTATCTGTTTTTGTTTTCA 59.186 34.615 0.00 0.00 0.00 2.69
3598 4096 6.020201 CGTGGGTTGTATCTGTTTTTGTTTTC 60.020 38.462 0.00 0.00 0.00 2.29
3599 4097 5.808030 CGTGGGTTGTATCTGTTTTTGTTTT 59.192 36.000 0.00 0.00 0.00 2.43
3600 4098 5.105675 ACGTGGGTTGTATCTGTTTTTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
3601 4099 4.399934 ACGTGGGTTGTATCTGTTTTTGTT 59.600 37.500 0.00 0.00 0.00 2.83
3602 4100 3.949113 ACGTGGGTTGTATCTGTTTTTGT 59.051 39.130 0.00 0.00 0.00 2.83
3603 4101 4.035792 TGACGTGGGTTGTATCTGTTTTTG 59.964 41.667 0.00 0.00 0.00 2.44
3604 4102 4.200874 TGACGTGGGTTGTATCTGTTTTT 58.799 39.130 0.00 0.00 0.00 1.94
3605 4103 3.811083 TGACGTGGGTTGTATCTGTTTT 58.189 40.909 0.00 0.00 0.00 2.43
3607 4105 2.870435 GCTGACGTGGGTTGTATCTGTT 60.870 50.000 0.00 0.00 0.00 3.16
3609 4107 1.337728 TGCTGACGTGGGTTGTATCTG 60.338 52.381 0.00 0.00 0.00 2.90
3611 4109 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
3612 4110 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
3615 4113 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
3616 4114 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
3617 4115 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
3618 4116 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
3619 4117 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
3620 4118 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
3621 4119 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
3623 4121 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
3624 4122 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
3625 4123 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
3626 4124 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
3627 4125 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
3628 4126 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
3630 4128 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
3631 4129 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
3632 4130 4.928020 AGATGTGATGCTATAAGATGCGTG 59.072 41.667 0.00 0.00 0.00 5.34
3633 4131 5.144692 AGATGTGATGCTATAAGATGCGT 57.855 39.130 0.00 0.00 0.00 5.24
3634 4132 7.254353 CCATTAGATGTGATGCTATAAGATGCG 60.254 40.741 0.00 0.00 0.00 4.73
3635 4133 7.466996 GCCATTAGATGTGATGCTATAAGATGC 60.467 40.741 0.00 0.00 0.00 3.91
3637 4135 7.859540 AGCCATTAGATGTGATGCTATAAGAT 58.140 34.615 0.00 0.00 0.00 2.40
3642 4140 9.964354 TTTTATAGCCATTAGATGTGATGCTAT 57.036 29.630 12.45 12.45 32.56 2.97
3643 4141 9.791801 TTTTTATAGCCATTAGATGTGATGCTA 57.208 29.630 0.00 0.00 0.00 3.49
3645 4143 8.571336 ACTTTTTATAGCCATTAGATGTGATGC 58.429 33.333 0.00 0.00 0.00 3.91
3646 4144 9.888878 CACTTTTTATAGCCATTAGATGTGATG 57.111 33.333 0.00 0.00 0.00 3.07
3647 4145 9.851686 TCACTTTTTATAGCCATTAGATGTGAT 57.148 29.630 0.00 0.00 0.00 3.06
3648 4146 9.679661 TTCACTTTTTATAGCCATTAGATGTGA 57.320 29.630 0.00 0.00 0.00 3.58
3655 4153 9.120538 GGTCTCATTCACTTTTTATAGCCATTA 57.879 33.333 0.00 0.00 0.00 1.90
3656 4154 7.615365 TGGTCTCATTCACTTTTTATAGCCATT 59.385 33.333 0.00 0.00 0.00 3.16
3658 4156 6.480763 TGGTCTCATTCACTTTTTATAGCCA 58.519 36.000 0.00 0.00 0.00 4.75
3659 4157 7.391148 TTGGTCTCATTCACTTTTTATAGCC 57.609 36.000 0.00 0.00 0.00 3.93
3660 4158 8.515414 AGTTTGGTCTCATTCACTTTTTATAGC 58.485 33.333 0.00 0.00 0.00 2.97
3667 4165 9.606631 GAGATATAGTTTGGTCTCATTCACTTT 57.393 33.333 0.00 0.00 37.60 2.66
3697 4195 8.349568 TCTACAGTTTTGCTAGAACTCATCTA 57.650 34.615 0.00 0.00 39.71 1.98
3699 4197 7.891183 TTCTACAGTTTTGCTAGAACTCATC 57.109 36.000 0.00 0.00 35.26 2.92
3700 4198 8.677148 TTTTCTACAGTTTTGCTAGAACTCAT 57.323 30.769 0.00 0.00 35.26 2.90
3701 4199 8.500753 TTTTTCTACAGTTTTGCTAGAACTCA 57.499 30.769 0.00 0.00 35.26 3.41
3874 8140 5.294734 ACTCCCACCGTTTCTTTTTAGTA 57.705 39.130 0.00 0.00 0.00 1.82
3878 8144 6.546772 TGTAATTACTCCCACCGTTTCTTTTT 59.453 34.615 16.33 0.00 0.00 1.94
3890 8156 6.539173 ACACAAGAACATGTAATTACTCCCA 58.461 36.000 16.33 0.00 30.84 4.37
3900 8166 6.578944 AGACAGTTGTACACAAGAACATGTA 58.421 36.000 0.00 0.00 36.39 2.29
3901 8167 5.428253 AGACAGTTGTACACAAGAACATGT 58.572 37.500 0.00 0.00 36.39 3.21
3902 8168 5.991328 AGACAGTTGTACACAAGAACATG 57.009 39.130 0.00 0.00 36.39 3.21
3903 8169 6.479001 GTGTAGACAGTTGTACACAAGAACAT 59.521 38.462 16.87 0.00 45.60 2.71
3904 8170 5.808540 GTGTAGACAGTTGTACACAAGAACA 59.191 40.000 16.87 0.00 45.60 3.18
3905 8171 6.270096 GTGTAGACAGTTGTACACAAGAAC 57.730 41.667 16.87 0.00 45.60 3.01
3911 8177 8.638685 TTTTTCTAGTGTAGACAGTTGTACAC 57.361 34.615 15.05 15.05 46.32 2.90
3915 8181 9.614792 ATTTCTTTTTCTAGTGTAGACAGTTGT 57.385 29.630 0.00 0.00 33.84 3.32
3918 8184 9.614792 ACAATTTCTTTTTCTAGTGTAGACAGT 57.385 29.630 0.00 0.00 33.84 3.55
3926 8192 8.807581 GTGGTCAAACAATTTCTTTTTCTAGTG 58.192 33.333 0.00 0.00 0.00 2.74
3927 8193 7.979537 GGTGGTCAAACAATTTCTTTTTCTAGT 59.020 33.333 0.00 0.00 0.00 2.57
3929 8195 7.269316 GGGTGGTCAAACAATTTCTTTTTCTA 58.731 34.615 0.00 0.00 0.00 2.10
3930 8196 6.112734 GGGTGGTCAAACAATTTCTTTTTCT 58.887 36.000 0.00 0.00 0.00 2.52
3931 8197 5.295787 GGGGTGGTCAAACAATTTCTTTTTC 59.704 40.000 0.00 0.00 0.00 2.29
3932 8198 5.189928 GGGGTGGTCAAACAATTTCTTTTT 58.810 37.500 0.00 0.00 0.00 1.94
3933 8199 4.682050 CGGGGTGGTCAAACAATTTCTTTT 60.682 41.667 0.00 0.00 0.00 2.27
3934 8200 3.181470 CGGGGTGGTCAAACAATTTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
3935 8201 2.364002 CGGGGTGGTCAAACAATTTCTT 59.636 45.455 0.00 0.00 0.00 2.52
3936 8202 1.960689 CGGGGTGGTCAAACAATTTCT 59.039 47.619 0.00 0.00 0.00 2.52
3937 8203 1.684450 ACGGGGTGGTCAAACAATTTC 59.316 47.619 0.00 0.00 0.00 2.17
3938 8204 1.783071 ACGGGGTGGTCAAACAATTT 58.217 45.000 0.00 0.00 0.00 1.82
3939 8205 2.510613 CTACGGGGTGGTCAAACAATT 58.489 47.619 0.00 0.00 0.00 2.32
3940 8206 1.271707 CCTACGGGGTGGTCAAACAAT 60.272 52.381 0.00 0.00 0.00 2.71
3941 8207 0.108963 CCTACGGGGTGGTCAAACAA 59.891 55.000 0.00 0.00 0.00 2.83
3943 8209 1.673337 GCCTACGGGGTGGTCAAAC 60.673 63.158 0.00 0.00 37.43 2.93
3945 8211 2.527123 TGCCTACGGGGTGGTCAA 60.527 61.111 0.00 0.00 37.43 3.18
3947 8213 2.666098 ATGTGCCTACGGGGTGGTC 61.666 63.158 0.00 0.00 37.43 4.02
3948 8214 2.609610 ATGTGCCTACGGGGTGGT 60.610 61.111 0.00 0.00 37.43 4.16
3949 8215 2.124736 CATGTGCCTACGGGGTGG 60.125 66.667 0.00 0.00 37.43 4.61
3951 8217 0.910566 TAACCATGTGCCTACGGGGT 60.911 55.000 0.00 0.00 37.42 4.95
3952 8218 0.472471 ATAACCATGTGCCTACGGGG 59.528 55.000 0.00 0.00 38.36 5.73
3953 8219 1.872237 CGATAACCATGTGCCTACGGG 60.872 57.143 0.00 0.00 0.00 5.28
3954 8220 1.067974 TCGATAACCATGTGCCTACGG 59.932 52.381 0.00 0.00 0.00 4.02
3955 8221 2.502213 TCGATAACCATGTGCCTACG 57.498 50.000 0.00 0.00 0.00 3.51
3956 8222 3.067106 CCATCGATAACCATGTGCCTAC 58.933 50.000 0.00 0.00 0.00 3.18
3957 8223 2.969262 TCCATCGATAACCATGTGCCTA 59.031 45.455 0.00 0.00 0.00 3.93
3958 8224 1.768275 TCCATCGATAACCATGTGCCT 59.232 47.619 0.00 0.00 0.00 4.75
3959 8225 2.254546 TCCATCGATAACCATGTGCC 57.745 50.000 0.00 0.00 0.00 5.01
3960 8226 3.814842 TGATTCCATCGATAACCATGTGC 59.185 43.478 0.00 0.00 0.00 4.57
3962 8228 4.067896 GCTGATTCCATCGATAACCATGT 58.932 43.478 0.00 0.00 0.00 3.21
3963 8229 3.438087 GGCTGATTCCATCGATAACCATG 59.562 47.826 0.00 0.00 0.00 3.66
3964 8230 3.328931 AGGCTGATTCCATCGATAACCAT 59.671 43.478 0.00 0.00 0.00 3.55
3965 8231 2.705658 AGGCTGATTCCATCGATAACCA 59.294 45.455 0.00 0.00 0.00 3.67
3966 8232 3.409026 AGGCTGATTCCATCGATAACC 57.591 47.619 0.00 0.00 0.00 2.85
3967 8233 6.092807 GGATTTAGGCTGATTCCATCGATAAC 59.907 42.308 13.54 0.00 0.00 1.89
3969 8235 5.485353 AGGATTTAGGCTGATTCCATCGATA 59.515 40.000 18.79 0.00 0.00 2.92
3972 8238 3.750130 CAGGATTTAGGCTGATTCCATCG 59.250 47.826 18.79 6.49 0.00 3.84
3973 8239 4.723309 ACAGGATTTAGGCTGATTCCATC 58.277 43.478 18.79 2.31 0.00 3.51
3975 8241 3.523157 TGACAGGATTTAGGCTGATTCCA 59.477 43.478 18.79 0.00 0.00 3.53
3976 8242 3.879892 GTGACAGGATTTAGGCTGATTCC 59.120 47.826 11.17 11.17 0.00 3.01
3977 8243 4.333926 GTGTGACAGGATTTAGGCTGATTC 59.666 45.833 0.00 0.00 0.00 2.52
3979 8245 3.679917 CGTGTGACAGGATTTAGGCTGAT 60.680 47.826 0.00 0.00 0.00 2.90
3980 8246 2.353704 CGTGTGACAGGATTTAGGCTGA 60.354 50.000 0.00 0.00 0.00 4.26
3981 8247 2.002586 CGTGTGACAGGATTTAGGCTG 58.997 52.381 0.00 0.00 0.00 4.85
3982 8248 1.623811 ACGTGTGACAGGATTTAGGCT 59.376 47.619 12.67 0.00 0.00 4.58
3983 8249 1.732259 CACGTGTGACAGGATTTAGGC 59.268 52.381 12.67 0.00 0.00 3.93
3984 8250 1.732259 GCACGTGTGACAGGATTTAGG 59.268 52.381 18.38 0.00 0.00 2.69
3985 8251 2.412870 TGCACGTGTGACAGGATTTAG 58.587 47.619 18.38 0.00 0.00 1.85
3987 8253 1.896220 ATGCACGTGTGACAGGATTT 58.104 45.000 18.38 0.00 0.00 2.17
3988 8254 1.896220 AATGCACGTGTGACAGGATT 58.104 45.000 18.38 0.00 0.00 3.01
3990 8256 2.535012 TAAATGCACGTGTGACAGGA 57.465 45.000 18.38 0.00 0.00 3.86
3991 8257 3.829886 AATAAATGCACGTGTGACAGG 57.170 42.857 18.38 3.43 0.00 4.00
3992 8258 5.323900 CCTAAATAAATGCACGTGTGACAG 58.676 41.667 18.38 2.72 0.00 3.51
3993 8259 4.155099 CCCTAAATAAATGCACGTGTGACA 59.845 41.667 18.38 7.14 0.00 3.58
3994 8260 4.155280 ACCCTAAATAAATGCACGTGTGAC 59.845 41.667 18.38 0.49 0.00 3.67
3995 8261 4.328536 ACCCTAAATAAATGCACGTGTGA 58.671 39.130 18.38 4.51 0.00 3.58
3996 8262 4.695217 ACCCTAAATAAATGCACGTGTG 57.305 40.909 18.38 0.00 0.00 3.82
3998 8264 5.303747 TGAACCCTAAATAAATGCACGTG 57.696 39.130 12.28 12.28 0.00 4.49
3999 8265 5.968528 TTGAACCCTAAATAAATGCACGT 57.031 34.783 0.00 0.00 0.00 4.49
4000 8266 7.383843 ACTTTTTGAACCCTAAATAAATGCACG 59.616 33.333 0.00 0.00 0.00 5.34
4001 8267 8.601845 ACTTTTTGAACCCTAAATAAATGCAC 57.398 30.769 0.00 0.00 0.00 4.57
4003 8269 9.051679 ACAACTTTTTGAACCCTAAATAAATGC 57.948 29.630 0.00 0.00 36.48 3.56
4009 8275 9.104965 GCTTTTACAACTTTTTGAACCCTAAAT 57.895 29.630 0.00 0.00 36.48 1.40
4010 8276 7.549842 GGCTTTTACAACTTTTTGAACCCTAAA 59.450 33.333 0.00 0.00 36.48 1.85
4012 8278 6.154706 TGGCTTTTACAACTTTTTGAACCCTA 59.845 34.615 0.00 0.00 36.48 3.53
4013 8279 5.046231 TGGCTTTTACAACTTTTTGAACCCT 60.046 36.000 0.00 0.00 36.48 4.34
4014 8280 5.179533 TGGCTTTTACAACTTTTTGAACCC 58.820 37.500 0.00 0.00 36.48 4.11
4015 8281 6.918892 ATGGCTTTTACAACTTTTTGAACC 57.081 33.333 0.00 0.00 36.48 3.62
4044 8310 9.086336 GGAAATGAATTTCGATGCTTGAATAAA 57.914 29.630 9.13 0.00 45.37 1.40
4046 8312 6.912051 CGGAAATGAATTTCGATGCTTGAATA 59.088 34.615 9.13 0.00 45.37 1.75
4047 8313 5.745294 CGGAAATGAATTTCGATGCTTGAAT 59.255 36.000 9.13 0.00 45.37 2.57
4048 8314 5.094812 CGGAAATGAATTTCGATGCTTGAA 58.905 37.500 9.13 0.00 45.37 2.69
4049 8315 4.155826 ACGGAAATGAATTTCGATGCTTGA 59.844 37.500 9.13 0.00 45.37 3.02
4050 8316 4.414852 ACGGAAATGAATTTCGATGCTTG 58.585 39.130 9.13 0.00 45.37 4.01
4053 8319 5.344665 TGAAAACGGAAATGAATTTCGATGC 59.655 36.000 9.13 0.00 45.37 3.91
4054 8320 6.183359 GGTGAAAACGGAAATGAATTTCGATG 60.183 38.462 9.13 5.20 45.37 3.84
4056 8322 5.216648 GGTGAAAACGGAAATGAATTTCGA 58.783 37.500 9.13 0.00 45.37 3.71
4057 8323 4.087930 CGGTGAAAACGGAAATGAATTTCG 59.912 41.667 9.13 7.53 45.37 3.46
4059 8325 3.738791 GCGGTGAAAACGGAAATGAATTT 59.261 39.130 0.00 0.00 0.00 1.82
4061 8327 2.352323 GGCGGTGAAAACGGAAATGAAT 60.352 45.455 0.00 0.00 0.00 2.57
4062 8328 1.001158 GGCGGTGAAAACGGAAATGAA 60.001 47.619 0.00 0.00 0.00 2.57
4063 8329 0.594110 GGCGGTGAAAACGGAAATGA 59.406 50.000 0.00 0.00 0.00 2.57
4064 8330 0.312416 TGGCGGTGAAAACGGAAATG 59.688 50.000 0.00 0.00 0.00 2.32
4065 8331 0.596082 CTGGCGGTGAAAACGGAAAT 59.404 50.000 0.00 0.00 0.00 2.17
4066 8332 1.448922 CCTGGCGGTGAAAACGGAAA 61.449 55.000 0.00 0.00 0.00 3.13
4067 8333 1.894756 CCTGGCGGTGAAAACGGAA 60.895 57.895 0.00 0.00 0.00 4.30
4069 8335 1.730451 AAACCTGGCGGTGAAAACGG 61.730 55.000 0.00 0.00 44.73 4.44
4070 8336 0.317519 GAAACCTGGCGGTGAAAACG 60.318 55.000 0.00 0.00 44.73 3.60
4072 8338 2.619646 GTTAGAAACCTGGCGGTGAAAA 59.380 45.455 0.00 0.00 44.73 2.29
4073 8339 2.223745 GTTAGAAACCTGGCGGTGAAA 58.776 47.619 0.00 0.00 44.73 2.69
4074 8340 1.874739 CGTTAGAAACCTGGCGGTGAA 60.875 52.381 0.00 0.00 44.73 3.18
4079 10314 0.387622 TCGTCGTTAGAAACCTGGCG 60.388 55.000 0.00 0.00 0.00 5.69
4086 10321 6.532657 AGTTTTGAAGAACTCGTCGTTAGAAA 59.467 34.615 0.00 0.00 34.94 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.