Multiple sequence alignment - TraesCS4D01G219000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G219000 chr4D 100.000 3701 0 0 1 3701 374337172 374333472 0.000000e+00 6835.0
1 TraesCS4D01G219000 chr4D 93.293 164 9 2 698 859 455598038 455598201 1.330000e-59 241.0
2 TraesCS4D01G219000 chr4D 90.643 171 13 3 691 859 120833946 120834115 1.340000e-54 224.0
3 TraesCS4D01G219000 chr4A 91.195 2476 98 37 854 3264 90048942 90051362 0.000000e+00 3254.0
4 TraesCS4D01G219000 chr4A 86.014 429 32 7 10 419 89952315 89952734 5.680000e-118 435.0
5 TraesCS4D01G219000 chr4A 89.474 285 17 9 421 697 90048666 90048945 7.610000e-92 348.0
6 TraesCS4D01G219000 chr4A 89.179 268 23 4 425 691 89956960 89957222 2.760000e-86 329.0
7 TraesCS4D01G219000 chr4A 89.015 264 10 7 854 1101 89957220 89957480 3.590000e-80 309.0
8 TraesCS4D01G219000 chr4A 95.000 60 3 0 3392 3451 90070827 90070886 1.090000e-15 95.3
9 TraesCS4D01G219000 chr4A 89.474 76 5 2 3626 3701 262663846 262663774 3.940000e-15 93.5
10 TraesCS4D01G219000 chr4A 89.041 73 7 1 432 504 89951975 89952046 5.090000e-14 89.8
11 TraesCS4D01G219000 chr4A 94.286 35 1 1 389 423 90014183 90014216 7.000000e-03 52.8
12 TraesCS4D01G219000 chr4B 95.605 1934 53 7 854 2766 460783797 460781875 0.000000e+00 3072.0
13 TraesCS4D01G219000 chr4B 85.149 707 53 28 2803 3480 460781872 460781189 0.000000e+00 676.0
14 TraesCS4D01G219000 chr4B 88.011 367 35 4 61 426 460786951 460786593 3.420000e-115 425.0
15 TraesCS4D01G219000 chr4B 87.410 278 13 7 421 697 460784045 460783789 2.160000e-77 300.0
16 TraesCS4D01G219000 chr3B 94.904 157 8 0 698 854 736318071 736318227 2.850000e-61 246.0
17 TraesCS4D01G219000 chr7B 94.231 156 9 0 699 854 680543718 680543563 4.780000e-59 239.0
18 TraesCS4D01G219000 chr6B 92.994 157 11 0 697 853 702214545 702214389 2.870000e-56 230.0
19 TraesCS4D01G219000 chr1A 79.825 228 17 10 3501 3701 510700682 510700457 4.980000e-29 139.0
20 TraesCS4D01G219000 chrUn 79.730 222 18 6 3501 3695 32095249 32095470 6.450000e-28 135.0
21 TraesCS4D01G219000 chr6D 78.947 228 21 3 3501 3701 308586202 308585975 3.000000e-26 130.0
22 TraesCS4D01G219000 chr5A 83.673 147 15 5 3501 3639 9386339 9386194 3.000000e-26 130.0
23 TraesCS4D01G219000 chr5A 79.186 221 20 12 3501 3695 165364972 165365192 3.000000e-26 130.0
24 TraesCS4D01G219000 chr6A 78.070 228 23 7 3501 3701 91897990 91897763 6.490000e-23 119.0
25 TraesCS4D01G219000 chr6A 95.238 63 3 0 3639 3701 440233213 440233151 2.350000e-17 100.0
26 TraesCS4D01G219000 chr5B 98.333 60 1 0 3638 3697 506783299 506783240 5.060000e-19 106.0
27 TraesCS4D01G219000 chr5D 98.214 56 1 0 3640 3695 182505246 182505301 8.460000e-17 99.0
28 TraesCS4D01G219000 chr7A 91.525 59 5 0 3501 3559 539932033 539932091 8.520000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G219000 chr4D 374333472 374337172 3700 True 6835.00 6835 100.00000 1 3701 1 chr4D.!!$R1 3700
1 TraesCS4D01G219000 chr4A 90048666 90051362 2696 False 1801.00 3254 90.33450 421 3264 2 chr4A.!!$F5 2843
2 TraesCS4D01G219000 chr4A 89956960 89957480 520 False 319.00 329 89.09700 425 1101 2 chr4A.!!$F4 676
3 TraesCS4D01G219000 chr4A 89951975 89952734 759 False 262.40 435 87.52750 10 504 2 chr4A.!!$F3 494
4 TraesCS4D01G219000 chr4B 460781189 460786951 5762 True 1118.25 3072 89.04375 61 3480 4 chr4B.!!$R1 3419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 390 0.041238 CTTCCCTTTCCCCTTTCCCC 59.959 60.0 0.00 0.0 0.00 4.81 F
847 3760 0.100682 AGGCATCGTACGCACAGTAG 59.899 55.0 11.24 0.0 35.72 2.57 F
848 3761 0.179145 GGCATCGTACGCACAGTAGT 60.179 55.0 11.24 0.0 35.72 2.73 F
2335 5297 0.107654 CCTCCGTCCAAAGATCACCC 60.108 60.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4942 1.143813 GGATCATGTCCCCCATCACT 58.856 55.0 0.00 0.00 41.5 3.41 R
2322 5284 0.477597 AGGGGTGGGTGATCTTTGGA 60.478 55.0 0.00 0.00 0.0 3.53 R
2382 5344 0.742281 CCTCGAACTGCAGGGTCATG 60.742 60.0 19.93 9.68 0.0 3.07 R
3213 6268 0.459585 AATCATTCCCGTGACGTCCG 60.460 55.0 14.12 15.50 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 390 0.041238 CTTCCCTTTCCCCTTTCCCC 59.959 60.000 0.00 0.00 0.00 4.81
105 451 6.811253 TGTAAACTGAACCACCATAATCAC 57.189 37.500 0.00 0.00 0.00 3.06
116 462 5.111989 CCACCATAATCACAGACACTAGTG 58.888 45.833 21.44 21.44 37.10 2.74
120 466 0.108615 ATCACAGACACTAGTGCCGC 60.109 55.000 22.90 12.26 35.76 6.53
136 482 4.992319 AGTGCCGCGCTAACAATATTTATA 59.008 37.500 4.15 0.00 0.00 0.98
187 533 7.551974 ACATCATCTAGTTGTTGAGAATCTTGG 59.448 37.037 15.59 0.00 34.92 3.61
191 537 6.459066 TCTAGTTGTTGAGAATCTTGGACTG 58.541 40.000 0.00 0.00 34.92 3.51
223 569 9.535270 GATCATTAGTAGATTTTTAGAATGCGC 57.465 33.333 0.00 0.00 0.00 6.09
266 612 6.672147 AGTTATGTCAATTTTCAGAGTGCAC 58.328 36.000 9.40 9.40 0.00 4.57
274 620 0.463654 TTCAGAGTGCACGTGGCTTT 60.464 50.000 18.88 2.49 45.15 3.51
276 622 2.050985 GAGTGCACGTGGCTTTGC 60.051 61.111 18.88 1.49 45.15 3.68
289 635 4.048504 GTGGCTTTGCATTTCGTAAGTTT 58.951 39.130 0.00 0.00 39.48 2.66
296 645 7.161900 GCTTTGCATTTCGTAAGTTTGTTTTTC 59.838 33.333 0.00 0.00 39.48 2.29
297 646 7.582435 TTGCATTTCGTAAGTTTGTTTTTCA 57.418 28.000 0.00 0.00 39.48 2.69
304 653 5.875910 TCGTAAGTTTGTTTTTCACCTCTGA 59.124 36.000 0.00 0.00 39.48 3.27
319 668 6.644347 TCACCTCTGATAACTTGAATTCCTC 58.356 40.000 2.27 0.00 0.00 3.71
320 669 6.441924 TCACCTCTGATAACTTGAATTCCTCT 59.558 38.462 2.27 0.00 0.00 3.69
321 670 6.538021 CACCTCTGATAACTTGAATTCCTCTG 59.462 42.308 2.27 0.00 0.00 3.35
322 671 5.526846 CCTCTGATAACTTGAATTCCTCTGC 59.473 44.000 2.27 0.00 0.00 4.26
323 672 5.111989 TCTGATAACTTGAATTCCTCTGCG 58.888 41.667 2.27 0.00 0.00 5.18
324 673 4.191544 TGATAACTTGAATTCCTCTGCGG 58.808 43.478 2.27 0.00 0.00 5.69
325 674 1.168714 AACTTGAATTCCTCTGCGGC 58.831 50.000 2.27 0.00 0.00 6.53
357 706 6.310224 CCATACTTTAACTGAAATTTTGCCCG 59.690 38.462 0.00 0.00 0.00 6.13
380 729 5.287992 CGAACAAGTTCCTATCCGTAAACTC 59.712 44.000 7.32 0.00 36.27 3.01
423 3324 6.095860 ACTTTTGCTAAGTAAAAACGAAGGGT 59.904 34.615 3.41 0.00 28.02 4.34
430 3331 4.721132 AGTAAAAACGAAGGGTTCATGGA 58.279 39.130 0.00 0.00 38.08 3.41
515 3420 2.863740 CTGATTGACTGCGCCGTTTATA 59.136 45.455 5.77 0.00 0.00 0.98
539 3445 0.320050 ACGGGCCGCAAAATCAAAAT 59.680 45.000 28.71 0.00 0.00 1.82
548 3454 7.173047 GGGCCGCAAAATCAAAATATCATAAAT 59.827 33.333 0.00 0.00 0.00 1.40
600 3506 8.440059 CAAAATCAATGTCAGAATCAAACCATG 58.560 33.333 0.00 0.00 0.00 3.66
601 3507 5.063180 TCAATGTCAGAATCAAACCATGC 57.937 39.130 0.00 0.00 0.00 4.06
602 3508 4.523558 TCAATGTCAGAATCAAACCATGCA 59.476 37.500 0.00 0.00 0.00 3.96
603 3509 5.186215 TCAATGTCAGAATCAAACCATGCAT 59.814 36.000 0.00 0.00 0.00 3.96
604 3510 5.670792 ATGTCAGAATCAAACCATGCATT 57.329 34.783 0.00 0.00 0.00 3.56
621 3530 5.417754 TGCATTCCTGGCAAAAATAATGA 57.582 34.783 6.29 0.00 38.54 2.57
622 3531 5.802465 TGCATTCCTGGCAAAAATAATGAA 58.198 33.333 6.29 0.00 38.54 2.57
627 3540 2.598192 CTGGCAAAAATAATGAACGCGG 59.402 45.455 12.47 0.00 0.00 6.46
695 3608 5.570344 CGAAGATCGTCAATACTGTACTGT 58.430 41.667 10.46 10.46 34.72 3.55
696 3609 6.712549 CGAAGATCGTCAATACTGTACTGTA 58.287 40.000 14.12 14.12 34.72 2.74
697 3610 6.846786 CGAAGATCGTCAATACTGTACTGTAG 59.153 42.308 16.42 5.95 34.72 2.74
698 3611 7.254353 CGAAGATCGTCAATACTGTACTGTAGA 60.254 40.741 16.42 9.23 34.72 2.59
699 3612 7.860918 AGATCGTCAATACTGTACTGTAGAA 57.139 36.000 16.42 3.89 0.00 2.10
700 3613 7.695820 AGATCGTCAATACTGTACTGTAGAAC 58.304 38.462 16.42 12.70 0.00 3.01
701 3614 6.187125 TCGTCAATACTGTACTGTAGAACC 57.813 41.667 16.42 5.84 0.00 3.62
702 3615 5.942236 TCGTCAATACTGTACTGTAGAACCT 59.058 40.000 16.42 0.00 0.00 3.50
703 3616 6.432162 TCGTCAATACTGTACTGTAGAACCTT 59.568 38.462 16.42 4.76 0.00 3.50
704 3617 6.527023 CGTCAATACTGTACTGTAGAACCTTG 59.473 42.308 16.42 14.55 0.00 3.61
705 3618 6.310711 GTCAATACTGTACTGTAGAACCTTGC 59.689 42.308 16.42 9.04 0.00 4.01
706 3619 6.210784 TCAATACTGTACTGTAGAACCTTGCT 59.789 38.462 16.42 0.00 0.00 3.91
707 3620 7.395206 TCAATACTGTACTGTAGAACCTTGCTA 59.605 37.037 16.42 1.43 0.00 3.49
708 3621 7.899648 ATACTGTACTGTAGAACCTTGCTAT 57.100 36.000 16.42 0.00 0.00 2.97
709 3622 8.991783 ATACTGTACTGTAGAACCTTGCTATA 57.008 34.615 16.42 0.00 0.00 1.31
710 3623 7.336161 ACTGTACTGTAGAACCTTGCTATAG 57.664 40.000 3.21 0.00 34.45 1.31
711 3624 6.321690 ACTGTACTGTAGAACCTTGCTATAGG 59.678 42.308 3.21 0.00 41.31 2.57
725 3638 8.594550 ACCTTGCTATAGGTATGATAAATTCGT 58.405 33.333 1.04 0.00 46.65 3.85
726 3639 8.873830 CCTTGCTATAGGTATGATAAATTCGTG 58.126 37.037 1.04 0.00 0.00 4.35
727 3640 9.424319 CTTGCTATAGGTATGATAAATTCGTGT 57.576 33.333 1.04 0.00 0.00 4.49
728 3641 8.981724 TGCTATAGGTATGATAAATTCGTGTC 57.018 34.615 1.04 0.00 0.00 3.67
729 3642 7.753580 TGCTATAGGTATGATAAATTCGTGTCG 59.246 37.037 1.04 0.00 0.00 4.35
730 3643 7.966753 GCTATAGGTATGATAAATTCGTGTCGA 59.033 37.037 1.04 0.00 0.00 4.20
741 3654 2.624316 TCGTGTCGAACACTCCATAC 57.376 50.000 13.65 0.00 46.46 2.39
742 3655 1.135888 TCGTGTCGAACACTCCATACG 60.136 52.381 13.65 0.00 46.46 3.06
743 3656 1.135888 CGTGTCGAACACTCCATACGA 60.136 52.381 13.65 0.00 46.46 3.43
744 3657 2.477357 CGTGTCGAACACTCCATACGAT 60.477 50.000 13.65 0.00 46.46 3.73
745 3658 3.508762 GTGTCGAACACTCCATACGATT 58.491 45.455 9.86 0.00 45.27 3.34
746 3659 4.665212 GTGTCGAACACTCCATACGATTA 58.335 43.478 9.86 0.00 45.27 1.75
747 3660 4.733887 GTGTCGAACACTCCATACGATTAG 59.266 45.833 9.86 0.00 45.27 1.73
748 3661 4.637091 TGTCGAACACTCCATACGATTAGA 59.363 41.667 0.00 0.00 35.57 2.10
749 3662 5.206299 GTCGAACACTCCATACGATTAGAG 58.794 45.833 0.00 0.00 35.57 2.43
750 3663 5.007430 GTCGAACACTCCATACGATTAGAGA 59.993 44.000 0.00 0.00 35.57 3.10
751 3664 5.007430 TCGAACACTCCATACGATTAGAGAC 59.993 44.000 0.00 0.00 0.00 3.36
752 3665 5.220796 CGAACACTCCATACGATTAGAGACA 60.221 44.000 0.00 0.00 0.00 3.41
753 3666 5.759506 ACACTCCATACGATTAGAGACAG 57.240 43.478 0.00 0.00 0.00 3.51
754 3667 4.036971 ACACTCCATACGATTAGAGACAGC 59.963 45.833 0.00 0.00 0.00 4.40
755 3668 3.570550 ACTCCATACGATTAGAGACAGCC 59.429 47.826 0.00 0.00 0.00 4.85
756 3669 3.562182 TCCATACGATTAGAGACAGCCA 58.438 45.455 0.00 0.00 0.00 4.75
757 3670 4.152647 TCCATACGATTAGAGACAGCCAT 58.847 43.478 0.00 0.00 0.00 4.40
758 3671 5.321927 TCCATACGATTAGAGACAGCCATA 58.678 41.667 0.00 0.00 0.00 2.74
759 3672 5.183331 TCCATACGATTAGAGACAGCCATAC 59.817 44.000 0.00 0.00 0.00 2.39
760 3673 5.048013 CCATACGATTAGAGACAGCCATACA 60.048 44.000 0.00 0.00 0.00 2.29
761 3674 4.576216 ACGATTAGAGACAGCCATACAG 57.424 45.455 0.00 0.00 0.00 2.74
762 3675 3.319405 ACGATTAGAGACAGCCATACAGG 59.681 47.826 0.00 0.00 41.84 4.00
763 3676 3.570125 CGATTAGAGACAGCCATACAGGA 59.430 47.826 0.00 0.00 41.22 3.86
764 3677 4.219507 CGATTAGAGACAGCCATACAGGAT 59.780 45.833 0.00 0.00 41.22 3.24
765 3678 5.279206 CGATTAGAGACAGCCATACAGGATT 60.279 44.000 0.00 0.00 41.22 3.01
766 3679 5.537300 TTAGAGACAGCCATACAGGATTC 57.463 43.478 0.00 0.00 41.22 2.52
767 3680 3.378512 AGAGACAGCCATACAGGATTCA 58.621 45.455 0.00 0.00 41.22 2.57
768 3681 3.387374 AGAGACAGCCATACAGGATTCAG 59.613 47.826 0.00 0.00 41.22 3.02
769 3682 3.110705 AGACAGCCATACAGGATTCAGT 58.889 45.455 0.00 0.00 41.22 3.41
770 3683 3.521126 AGACAGCCATACAGGATTCAGTT 59.479 43.478 0.00 0.00 41.22 3.16
771 3684 4.018960 AGACAGCCATACAGGATTCAGTTT 60.019 41.667 0.00 0.00 41.22 2.66
772 3685 4.012374 ACAGCCATACAGGATTCAGTTTG 58.988 43.478 0.00 0.00 41.22 2.93
773 3686 4.012374 CAGCCATACAGGATTCAGTTTGT 58.988 43.478 0.00 0.00 41.22 2.83
774 3687 4.012374 AGCCATACAGGATTCAGTTTGTG 58.988 43.478 0.00 0.00 41.22 3.33
775 3688 3.129287 GCCATACAGGATTCAGTTTGTGG 59.871 47.826 0.00 0.00 41.22 4.17
776 3689 3.696051 CCATACAGGATTCAGTTTGTGGG 59.304 47.826 0.00 0.00 41.22 4.61
777 3690 1.620822 ACAGGATTCAGTTTGTGGGC 58.379 50.000 0.00 0.00 0.00 5.36
778 3691 0.890683 CAGGATTCAGTTTGTGGGCC 59.109 55.000 0.00 0.00 0.00 5.80
779 3692 0.251787 AGGATTCAGTTTGTGGGCCC 60.252 55.000 17.59 17.59 0.00 5.80
780 3693 0.251787 GGATTCAGTTTGTGGGCCCT 60.252 55.000 25.70 0.00 0.00 5.19
781 3694 1.005450 GGATTCAGTTTGTGGGCCCTA 59.995 52.381 25.70 9.60 0.00 3.53
782 3695 2.369394 GATTCAGTTTGTGGGCCCTAG 58.631 52.381 25.70 4.84 0.00 3.02
783 3696 1.145571 TTCAGTTTGTGGGCCCTAGT 58.854 50.000 25.70 5.80 0.00 2.57
784 3697 2.032965 TCAGTTTGTGGGCCCTAGTA 57.967 50.000 25.70 0.00 0.00 1.82
785 3698 1.626825 TCAGTTTGTGGGCCCTAGTAC 59.373 52.381 25.70 13.70 0.00 2.73
786 3699 1.628846 CAGTTTGTGGGCCCTAGTACT 59.371 52.381 25.70 17.82 0.00 2.73
787 3700 2.039879 CAGTTTGTGGGCCCTAGTACTT 59.960 50.000 25.70 0.00 0.00 2.24
788 3701 3.262405 CAGTTTGTGGGCCCTAGTACTTA 59.738 47.826 25.70 0.00 0.00 2.24
789 3702 3.518303 AGTTTGTGGGCCCTAGTACTTAG 59.482 47.826 25.70 0.00 0.00 2.18
790 3703 3.478175 TTGTGGGCCCTAGTACTTAGA 57.522 47.619 25.70 0.00 0.00 2.10
791 3704 3.028094 TGTGGGCCCTAGTACTTAGAG 57.972 52.381 25.70 0.00 0.00 2.43
792 3705 2.584031 TGTGGGCCCTAGTACTTAGAGA 59.416 50.000 25.70 0.00 0.00 3.10
793 3706 3.206866 TGTGGGCCCTAGTACTTAGAGAT 59.793 47.826 25.70 0.00 0.00 2.75
794 3707 3.574826 GTGGGCCCTAGTACTTAGAGATG 59.425 52.174 25.70 0.00 0.00 2.90
795 3708 3.465966 TGGGCCCTAGTACTTAGAGATGA 59.534 47.826 25.70 0.00 0.00 2.92
796 3709 4.108124 TGGGCCCTAGTACTTAGAGATGAT 59.892 45.833 25.70 0.00 0.00 2.45
797 3710 5.088026 GGGCCCTAGTACTTAGAGATGATT 58.912 45.833 17.04 0.00 0.00 2.57
798 3711 5.186215 GGGCCCTAGTACTTAGAGATGATTC 59.814 48.000 17.04 0.00 0.00 2.52
799 3712 5.186215 GGCCCTAGTACTTAGAGATGATTCC 59.814 48.000 0.00 0.00 0.00 3.01
800 3713 5.775701 GCCCTAGTACTTAGAGATGATTCCA 59.224 44.000 0.00 0.00 0.00 3.53
801 3714 6.071616 GCCCTAGTACTTAGAGATGATTCCAG 60.072 46.154 0.00 0.00 0.00 3.86
802 3715 7.007723 CCCTAGTACTTAGAGATGATTCCAGT 58.992 42.308 0.00 0.00 0.00 4.00
803 3716 7.175990 CCCTAGTACTTAGAGATGATTCCAGTC 59.824 44.444 0.00 0.00 0.00 3.51
804 3717 7.942341 CCTAGTACTTAGAGATGATTCCAGTCT 59.058 40.741 0.00 0.00 0.00 3.24
805 3718 7.581213 AGTACTTAGAGATGATTCCAGTCTG 57.419 40.000 0.00 0.00 0.00 3.51
806 3719 7.350382 AGTACTTAGAGATGATTCCAGTCTGA 58.650 38.462 0.00 0.00 0.00 3.27
807 3720 8.004215 AGTACTTAGAGATGATTCCAGTCTGAT 58.996 37.037 0.00 0.00 0.00 2.90
808 3721 7.288810 ACTTAGAGATGATTCCAGTCTGATC 57.711 40.000 0.00 0.00 0.00 2.92
809 3722 4.852134 AGAGATGATTCCAGTCTGATCG 57.148 45.455 0.00 0.00 0.00 3.69
810 3723 4.214310 AGAGATGATTCCAGTCTGATCGT 58.786 43.478 0.00 0.00 0.00 3.73
811 3724 5.380900 AGAGATGATTCCAGTCTGATCGTA 58.619 41.667 0.00 0.00 0.00 3.43
812 3725 6.009589 AGAGATGATTCCAGTCTGATCGTAT 58.990 40.000 0.00 0.00 0.00 3.06
813 3726 6.493115 AGAGATGATTCCAGTCTGATCGTATT 59.507 38.462 0.00 0.00 0.00 1.89
814 3727 7.667635 AGAGATGATTCCAGTCTGATCGTATTA 59.332 37.037 0.00 0.00 0.00 0.98
815 3728 8.359875 AGATGATTCCAGTCTGATCGTATTAT 57.640 34.615 0.00 0.00 0.00 1.28
816 3729 8.811017 AGATGATTCCAGTCTGATCGTATTATT 58.189 33.333 0.00 0.00 0.00 1.40
817 3730 8.768957 ATGATTCCAGTCTGATCGTATTATTG 57.231 34.615 0.00 0.00 0.00 1.90
818 3731 7.726216 TGATTCCAGTCTGATCGTATTATTGT 58.274 34.615 0.00 0.00 0.00 2.71
819 3732 7.867909 TGATTCCAGTCTGATCGTATTATTGTC 59.132 37.037 0.00 0.00 0.00 3.18
820 3733 6.085555 TCCAGTCTGATCGTATTATTGTCC 57.914 41.667 0.00 0.00 0.00 4.02
821 3734 4.917998 CCAGTCTGATCGTATTATTGTCCG 59.082 45.833 0.00 0.00 0.00 4.79
822 3735 5.278315 CCAGTCTGATCGTATTATTGTCCGA 60.278 44.000 0.00 0.00 0.00 4.55
823 3736 5.625721 CAGTCTGATCGTATTATTGTCCGAC 59.374 44.000 0.00 0.00 31.43 4.79
824 3737 4.611782 GTCTGATCGTATTATTGTCCGACG 59.388 45.833 0.00 0.00 34.90 5.12
825 3738 4.512571 TCTGATCGTATTATTGTCCGACGA 59.487 41.667 0.00 0.00 45.54 4.20
826 3739 4.779987 TGATCGTATTATTGTCCGACGAG 58.220 43.478 0.00 0.00 44.78 4.18
827 3740 4.512571 TGATCGTATTATTGTCCGACGAGA 59.487 41.667 0.00 0.00 44.78 4.04
828 3741 4.880886 TCGTATTATTGTCCGACGAGAA 57.119 40.909 0.00 0.00 37.60 2.87
829 3742 4.840911 TCGTATTATTGTCCGACGAGAAG 58.159 43.478 0.00 0.00 37.60 2.85
830 3743 3.973135 CGTATTATTGTCCGACGAGAAGG 59.027 47.826 0.00 0.00 35.59 3.46
831 3744 2.288961 TTATTGTCCGACGAGAAGGC 57.711 50.000 0.00 0.00 0.00 4.35
832 3745 1.179152 TATTGTCCGACGAGAAGGCA 58.821 50.000 0.00 0.00 0.00 4.75
833 3746 0.537188 ATTGTCCGACGAGAAGGCAT 59.463 50.000 0.00 0.00 0.00 4.40
834 3747 0.108804 TTGTCCGACGAGAAGGCATC 60.109 55.000 0.00 0.00 0.00 3.91
835 3748 1.586564 GTCCGACGAGAAGGCATCG 60.587 63.158 0.00 5.42 45.54 3.84
840 3753 3.601981 CGAGAAGGCATCGTACGC 58.398 61.111 11.24 0.00 35.48 4.42
841 3754 1.226575 CGAGAAGGCATCGTACGCA 60.227 57.895 11.24 0.00 35.48 5.24
842 3755 1.472276 CGAGAAGGCATCGTACGCAC 61.472 60.000 11.24 1.70 35.48 5.34
843 3756 0.457853 GAGAAGGCATCGTACGCACA 60.458 55.000 11.24 0.00 0.00 4.57
844 3757 0.458543 AGAAGGCATCGTACGCACAG 60.459 55.000 11.24 1.01 0.00 3.66
845 3758 0.736325 GAAGGCATCGTACGCACAGT 60.736 55.000 11.24 0.00 0.00 3.55
846 3759 0.528924 AAGGCATCGTACGCACAGTA 59.471 50.000 11.24 0.00 0.00 2.74
847 3760 0.100682 AGGCATCGTACGCACAGTAG 59.899 55.000 11.24 0.00 35.72 2.57
848 3761 0.179145 GGCATCGTACGCACAGTAGT 60.179 55.000 11.24 0.00 35.72 2.73
849 3762 1.625616 GCATCGTACGCACAGTAGTT 58.374 50.000 11.24 0.00 35.72 2.24
850 3763 1.990563 GCATCGTACGCACAGTAGTTT 59.009 47.619 11.24 0.00 35.72 2.66
851 3764 2.027688 GCATCGTACGCACAGTAGTTTC 59.972 50.000 11.24 0.00 35.72 2.78
852 3765 1.954437 TCGTACGCACAGTAGTTTCG 58.046 50.000 11.24 0.00 35.72 3.46
1316 4260 4.394712 CACCTTCCGCCCGCTCTT 62.395 66.667 0.00 0.00 0.00 2.85
1788 4750 1.627297 CCAGGAACTACCCCAGCTCC 61.627 65.000 0.00 0.00 39.50 4.70
1908 4870 3.607370 GACCTTCTTCCCGGCGCTT 62.607 63.158 7.64 0.00 0.00 4.68
1980 4942 4.111016 AGAATGTCGTCGCCGCGA 62.111 61.111 12.39 12.39 38.68 5.87
2249 5211 4.841443 TCTACTACAACTTCAGCAACGA 57.159 40.909 0.00 0.00 0.00 3.85
2298 5260 1.726533 CCTTCTCGCCGGAGTACCTC 61.727 65.000 5.05 0.00 41.26 3.85
2335 5297 0.107654 CCTCCGTCCAAAGATCACCC 60.108 60.000 0.00 0.00 0.00 4.61
2771 5753 6.848296 CGATTGTTTTGTTCTCTTCTGTCTTC 59.152 38.462 0.00 0.00 0.00 2.87
2823 5808 0.396435 TGAGGTGATGCCGTGACTTT 59.604 50.000 0.00 0.00 43.70 2.66
2838 5823 4.331962 GTGACTTTGTTCGTTGTTCAGTC 58.668 43.478 0.00 0.00 0.00 3.51
2842 5835 4.569564 ACTTTGTTCGTTGTTCAGTCCTAC 59.430 41.667 0.00 0.00 0.00 3.18
2914 5907 2.337583 CGAAAGGCGAAGAATGTCTGA 58.662 47.619 0.00 0.00 44.57 3.27
2915 5908 2.736721 CGAAAGGCGAAGAATGTCTGAA 59.263 45.455 0.00 0.00 44.57 3.02
2916 5909 3.186409 CGAAAGGCGAAGAATGTCTGAAA 59.814 43.478 0.00 0.00 44.57 2.69
2917 5910 4.319477 CGAAAGGCGAAGAATGTCTGAAAA 60.319 41.667 0.00 0.00 44.57 2.29
2918 5911 5.514274 AAAGGCGAAGAATGTCTGAAAAA 57.486 34.783 0.00 0.00 0.00 1.94
2919 5912 4.756084 AGGCGAAGAATGTCTGAAAAAG 57.244 40.909 0.00 0.00 0.00 2.27
2920 5913 3.503748 AGGCGAAGAATGTCTGAAAAAGG 59.496 43.478 0.00 0.00 0.00 3.11
2921 5914 3.253432 GGCGAAGAATGTCTGAAAAAGGT 59.747 43.478 0.00 0.00 0.00 3.50
2922 5915 4.222114 GCGAAGAATGTCTGAAAAAGGTG 58.778 43.478 0.00 0.00 0.00 4.00
2923 5916 4.222114 CGAAGAATGTCTGAAAAAGGTGC 58.778 43.478 0.00 0.00 0.00 5.01
2924 5917 4.023707 CGAAGAATGTCTGAAAAAGGTGCT 60.024 41.667 0.00 0.00 0.00 4.40
2925 5918 5.444663 AAGAATGTCTGAAAAAGGTGCTC 57.555 39.130 0.00 0.00 0.00 4.26
2926 5919 3.499918 AGAATGTCTGAAAAAGGTGCTCG 59.500 43.478 0.00 0.00 0.00 5.03
2927 5920 1.593196 TGTCTGAAAAAGGTGCTCGG 58.407 50.000 0.00 0.00 0.00 4.63
2928 5921 0.238553 GTCTGAAAAAGGTGCTCGGC 59.761 55.000 0.00 0.00 0.00 5.54
2929 5922 0.108585 TCTGAAAAAGGTGCTCGGCT 59.891 50.000 0.00 0.00 0.00 5.52
2930 5923 0.519077 CTGAAAAAGGTGCTCGGCTC 59.481 55.000 0.00 0.00 0.00 4.70
2931 5924 0.179032 TGAAAAAGGTGCTCGGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
2932 5925 0.519077 GAAAAAGGTGCTCGGCTCAG 59.481 55.000 0.00 0.00 0.00 3.35
2933 5926 1.518903 AAAAAGGTGCTCGGCTCAGC 61.519 55.000 0.00 0.00 40.13 4.26
2934 5927 2.403132 AAAAGGTGCTCGGCTCAGCT 62.403 55.000 0.00 2.68 43.28 4.24
2935 5928 3.602513 AAGGTGCTCGGCTCAGCTG 62.603 63.158 7.63 7.63 40.91 4.24
2936 5929 4.074526 GGTGCTCGGCTCAGCTGA 62.075 66.667 17.19 17.19 42.08 4.26
2973 5988 3.229156 ATTCACGTGAACCGGCCGA 62.229 57.895 31.87 9.03 42.24 5.54
3005 6020 2.683859 CGTGACGCACCCTAGACGA 61.684 63.158 0.00 0.00 0.00 4.20
3013 6028 1.537135 GCACCCTAGACGAATCTGCTC 60.537 57.143 0.00 0.00 36.29 4.26
3014 6029 1.067821 CACCCTAGACGAATCTGCTCC 59.932 57.143 0.00 0.00 36.29 4.70
3015 6030 1.063567 ACCCTAGACGAATCTGCTCCT 60.064 52.381 0.00 0.00 36.29 3.69
3016 6031 1.339610 CCCTAGACGAATCTGCTCCTG 59.660 57.143 0.00 0.00 36.29 3.86
3017 6032 1.339610 CCTAGACGAATCTGCTCCTGG 59.660 57.143 0.00 0.00 36.29 4.45
3018 6033 1.339610 CTAGACGAATCTGCTCCTGGG 59.660 57.143 0.00 0.00 36.29 4.45
3044 6069 2.091541 CCTACGTGCATTTGGTGGATT 58.908 47.619 0.00 0.00 0.00 3.01
3056 6106 1.063649 GTGGATTCATGCTGCTGCG 59.936 57.895 11.21 0.00 43.34 5.18
3063 6113 3.494336 ATGCTGCTGCGTCGAAGC 61.494 61.111 18.86 18.86 43.34 3.86
3124 6178 2.235155 GTTCCTTCCTTCTCTGGGAGAC 59.765 54.545 0.00 0.00 38.51 3.36
3267 6322 3.923864 TGCGGACGTGCAGTTCCT 61.924 61.111 8.11 0.00 40.62 3.36
3268 6323 3.414700 GCGGACGTGCAGTTCCTG 61.415 66.667 8.11 6.51 34.15 3.86
3283 6338 3.060615 CTGGGCAGTCAGCTTGGC 61.061 66.667 1.92 1.92 44.79 4.52
3308 6363 1.522580 GAGGAATGGCTGCGGTCTC 60.523 63.158 0.00 0.00 0.00 3.36
3339 6400 3.051392 GAAAATCCTGGCGTGCCGG 62.051 63.158 12.91 12.91 42.03 6.13
3349 6410 4.776322 CGTGCCGGGATGCCTTCA 62.776 66.667 2.18 0.00 0.00 3.02
3354 6415 2.885644 CGGGATGCCTTCACGTCG 60.886 66.667 0.28 0.00 46.41 5.12
3363 6424 3.287121 CTTCACGTCGTGCAGCTGC 62.287 63.158 31.89 31.89 42.50 5.25
3372 6433 4.908687 TGCAGCTGCGTGAACGGT 62.909 61.111 32.11 0.00 45.83 4.83
3434 6495 1.766864 TTGGTCGGACTGAACCCCA 60.767 57.895 8.23 0.00 31.20 4.96
3437 6498 0.887836 GGTCGGACTGAACCCCAAAC 60.888 60.000 8.23 0.00 0.00 2.93
3438 6499 0.179040 GTCGGACTGAACCCCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
3444 6505 3.005791 GGACTGAACCCCAAACAATCAAG 59.994 47.826 0.00 0.00 0.00 3.02
3457 6518 7.148323 CCCAAACAATCAAGAATGTATCGTACA 60.148 37.037 0.00 1.30 43.80 2.90
3472 6533 6.807720 TGTATCGTACAAAAATGCTTCGTCTA 59.192 34.615 0.00 0.00 35.38 2.59
3473 6534 5.505165 TCGTACAAAAATGCTTCGTCTAC 57.495 39.130 0.00 0.00 0.00 2.59
3474 6535 5.224888 TCGTACAAAAATGCTTCGTCTACT 58.775 37.500 0.00 0.00 0.00 2.57
3476 6537 4.749245 ACAAAAATGCTTCGTCTACTGG 57.251 40.909 0.00 0.00 0.00 4.00
3477 6538 4.134563 ACAAAAATGCTTCGTCTACTGGT 58.865 39.130 0.00 0.00 0.00 4.00
3478 6539 5.302360 ACAAAAATGCTTCGTCTACTGGTA 58.698 37.500 0.00 0.00 0.00 3.25
3479 6540 5.408604 ACAAAAATGCTTCGTCTACTGGTAG 59.591 40.000 1.65 1.65 34.56 3.18
3480 6541 4.803098 AAATGCTTCGTCTACTGGTAGT 57.197 40.909 7.52 0.00 34.84 2.73
3481 6542 5.909621 AAATGCTTCGTCTACTGGTAGTA 57.090 39.130 7.52 0.00 34.84 1.82
3482 6543 6.466885 AAATGCTTCGTCTACTGGTAGTAT 57.533 37.500 7.52 0.00 34.84 2.12
3483 6544 5.692613 ATGCTTCGTCTACTGGTAGTATC 57.307 43.478 7.52 0.93 34.84 2.24
3484 6545 4.778579 TGCTTCGTCTACTGGTAGTATCT 58.221 43.478 7.52 0.00 34.84 1.98
3485 6546 5.922053 TGCTTCGTCTACTGGTAGTATCTA 58.078 41.667 7.52 0.00 34.84 1.98
3486 6547 6.351711 TGCTTCGTCTACTGGTAGTATCTAA 58.648 40.000 7.52 0.23 34.84 2.10
3487 6548 6.825213 TGCTTCGTCTACTGGTAGTATCTAAA 59.175 38.462 7.52 0.00 34.84 1.85
3488 6549 7.337689 TGCTTCGTCTACTGGTAGTATCTAAAA 59.662 37.037 7.52 0.00 34.84 1.52
3489 6550 7.643371 GCTTCGTCTACTGGTAGTATCTAAAAC 59.357 40.741 7.52 0.00 34.84 2.43
3490 6551 8.798859 TTCGTCTACTGGTAGTATCTAAAACT 57.201 34.615 7.52 0.00 34.84 2.66
3491 6552 8.430801 TCGTCTACTGGTAGTATCTAAAACTC 57.569 38.462 7.52 0.00 34.84 3.01
3492 6553 7.497249 TCGTCTACTGGTAGTATCTAAAACTCC 59.503 40.741 7.52 0.00 34.84 3.85
3493 6554 7.281774 CGTCTACTGGTAGTATCTAAAACTCCA 59.718 40.741 7.52 0.00 34.84 3.86
3494 6555 8.964772 GTCTACTGGTAGTATCTAAAACTCCAA 58.035 37.037 7.52 0.00 34.84 3.53
3495 6556 9.537852 TCTACTGGTAGTATCTAAAACTCCAAA 57.462 33.333 7.52 0.00 34.84 3.28
3497 6558 8.843885 ACTGGTAGTATCTAAAACTCCAAAAC 57.156 34.615 0.00 0.00 0.00 2.43
3498 6559 8.434392 ACTGGTAGTATCTAAAACTCCAAAACA 58.566 33.333 0.00 0.00 0.00 2.83
3499 6560 8.842358 TGGTAGTATCTAAAACTCCAAAACAG 57.158 34.615 0.00 0.00 0.00 3.16
3500 6561 8.434392 TGGTAGTATCTAAAACTCCAAAACAGT 58.566 33.333 0.00 0.00 0.00 3.55
3501 6562 8.718734 GGTAGTATCTAAAACTCCAAAACAGTG 58.281 37.037 0.00 0.00 0.00 3.66
3502 6563 9.269453 GTAGTATCTAAAACTCCAAAACAGTGT 57.731 33.333 0.00 0.00 0.00 3.55
3504 6565 9.490379 AGTATCTAAAACTCCAAAACAGTGTAG 57.510 33.333 0.00 0.00 0.00 2.74
3505 6566 7.745620 ATCTAAAACTCCAAAACAGTGTAGG 57.254 36.000 0.00 0.00 0.00 3.18
3506 6567 6.891388 TCTAAAACTCCAAAACAGTGTAGGA 58.109 36.000 0.00 4.01 0.00 2.94
3507 6568 7.340256 TCTAAAACTCCAAAACAGTGTAGGAA 58.660 34.615 11.71 0.00 0.00 3.36
3508 6569 7.996644 TCTAAAACTCCAAAACAGTGTAGGAAT 59.003 33.333 11.71 1.53 0.00 3.01
3509 6570 6.635030 AAACTCCAAAACAGTGTAGGAATC 57.365 37.500 11.71 0.00 0.00 2.52
3510 6571 5.568620 ACTCCAAAACAGTGTAGGAATCT 57.431 39.130 11.71 0.00 0.00 2.40
3511 6572 5.552178 ACTCCAAAACAGTGTAGGAATCTC 58.448 41.667 11.71 0.00 0.00 2.75
3512 6573 5.071788 ACTCCAAAACAGTGTAGGAATCTCA 59.928 40.000 11.71 0.00 0.00 3.27
3513 6574 6.126863 TCCAAAACAGTGTAGGAATCTCAT 57.873 37.500 8.99 0.00 0.00 2.90
3514 6575 7.038302 ACTCCAAAACAGTGTAGGAATCTCATA 60.038 37.037 11.71 0.00 0.00 2.15
3515 6576 7.331026 TCCAAAACAGTGTAGGAATCTCATAG 58.669 38.462 8.99 0.00 0.00 2.23
3516 6577 7.180229 TCCAAAACAGTGTAGGAATCTCATAGA 59.820 37.037 8.99 0.00 0.00 1.98
3517 6578 7.824289 CCAAAACAGTGTAGGAATCTCATAGAA 59.176 37.037 0.00 0.00 0.00 2.10
3518 6579 9.388506 CAAAACAGTGTAGGAATCTCATAGAAT 57.611 33.333 0.00 0.00 0.00 2.40
3519 6580 9.965902 AAAACAGTGTAGGAATCTCATAGAATT 57.034 29.630 0.00 0.00 0.00 2.17
3520 6581 9.965902 AAACAGTGTAGGAATCTCATAGAATTT 57.034 29.630 0.00 0.00 0.00 1.82
3521 6582 9.606631 AACAGTGTAGGAATCTCATAGAATTTC 57.393 33.333 0.00 0.00 0.00 2.17
3522 6583 8.986991 ACAGTGTAGGAATCTCATAGAATTTCT 58.013 33.333 4.03 4.03 0.00 2.52
3568 6629 3.518634 TTTTCTTTGAAGCGCTTTGGT 57.481 38.095 25.84 0.03 0.00 3.67
3569 6630 3.518634 TTTCTTTGAAGCGCTTTGGTT 57.481 38.095 25.84 0.00 42.02 3.67
3570 6631 3.518634 TTCTTTGAAGCGCTTTGGTTT 57.481 38.095 25.84 0.00 38.70 3.27
3571 6632 4.640789 TTCTTTGAAGCGCTTTGGTTTA 57.359 36.364 25.84 6.46 38.70 2.01
3572 6633 4.846779 TCTTTGAAGCGCTTTGGTTTAT 57.153 36.364 25.84 0.00 38.70 1.40
3573 6634 5.950758 TCTTTGAAGCGCTTTGGTTTATA 57.049 34.783 25.84 2.77 38.70 0.98
3574 6635 5.938322 TCTTTGAAGCGCTTTGGTTTATAG 58.062 37.500 25.84 12.62 38.70 1.31
3575 6636 4.695217 TTGAAGCGCTTTGGTTTATAGG 57.305 40.909 25.84 0.00 38.70 2.57
3576 6637 3.945346 TGAAGCGCTTTGGTTTATAGGA 58.055 40.909 25.84 0.00 38.70 2.94
3577 6638 4.328536 TGAAGCGCTTTGGTTTATAGGAA 58.671 39.130 25.84 0.00 38.70 3.36
3578 6639 4.394920 TGAAGCGCTTTGGTTTATAGGAAG 59.605 41.667 25.84 0.00 38.70 3.46
3579 6640 3.279434 AGCGCTTTGGTTTATAGGAAGG 58.721 45.455 2.64 0.00 0.00 3.46
3580 6641 2.357952 GCGCTTTGGTTTATAGGAAGGG 59.642 50.000 0.00 0.00 34.55 3.95
3581 6642 2.949644 CGCTTTGGTTTATAGGAAGGGG 59.050 50.000 0.00 0.00 0.00 4.79
3582 6643 3.623954 CGCTTTGGTTTATAGGAAGGGGT 60.624 47.826 0.00 0.00 0.00 4.95
3583 6644 4.350245 GCTTTGGTTTATAGGAAGGGGTT 58.650 43.478 0.00 0.00 0.00 4.11
3584 6645 4.401519 GCTTTGGTTTATAGGAAGGGGTTC 59.598 45.833 0.00 0.00 0.00 3.62
3585 6646 4.596354 TTGGTTTATAGGAAGGGGTTCC 57.404 45.455 0.00 0.00 41.42 3.62
3599 6660 8.458951 GGAAGGGGTTCCTATTCCTATATAAA 57.541 38.462 14.03 0.00 44.07 1.40
3600 6661 9.070210 GGAAGGGGTTCCTATTCCTATATAAAT 57.930 37.037 14.03 0.00 44.07 1.40
3651 6712 9.829507 AGAAACATTAGCTATATCCTATGCATC 57.170 33.333 0.19 0.00 0.00 3.91
3652 6713 9.605275 GAAACATTAGCTATATCCTATGCATCA 57.395 33.333 0.19 0.00 0.00 3.07
3653 6714 9.964354 AAACATTAGCTATATCCTATGCATCAA 57.036 29.630 0.19 0.00 0.00 2.57
3654 6715 9.964354 AACATTAGCTATATCCTATGCATCAAA 57.036 29.630 0.19 0.00 0.00 2.69
3666 6727 8.985315 TCCTATGCATCAAATAACATCTCTTT 57.015 30.769 0.19 0.00 0.00 2.52
3667 6728 9.060347 TCCTATGCATCAAATAACATCTCTTTC 57.940 33.333 0.19 0.00 0.00 2.62
3668 6729 9.064706 CCTATGCATCAAATAACATCTCTTTCT 57.935 33.333 0.19 0.00 0.00 2.52
3670 6731 8.749026 ATGCATCAAATAACATCTCTTTCTCT 57.251 30.769 0.00 0.00 0.00 3.10
3671 6732 9.842775 ATGCATCAAATAACATCTCTTTCTCTA 57.157 29.630 0.00 0.00 0.00 2.43
3672 6733 9.842775 TGCATCAAATAACATCTCTTTCTCTAT 57.157 29.630 0.00 0.00 0.00 1.98
3683 6744 9.653516 ACATCTCTTTCTCTATAGGAATTGAGA 57.346 33.333 21.74 21.74 40.68 3.27
3692 6753 9.813826 TCTCTATAGGAATTGAGATACATGTCA 57.186 33.333 0.00 0.00 38.53 3.58
3697 6758 6.892485 AGGAATTGAGATACATGTCATCACA 58.108 36.000 0.00 6.49 36.78 3.58
3698 6759 7.515586 AGGAATTGAGATACATGTCATCACAT 58.484 34.615 0.00 0.00 44.72 3.21
3699 6760 7.997223 AGGAATTGAGATACATGTCATCACATT 59.003 33.333 0.00 7.94 40.66 2.71
3700 6761 8.627403 GGAATTGAGATACATGTCATCACATTT 58.373 33.333 0.00 10.78 40.66 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.447801 GTAGGTCATTTGCCGCAGTG 59.552 55.000 0.00 0.00 0.00 3.66
9 10 1.296727 GGTAGTAGGTCATTTGCCGC 58.703 55.000 0.00 0.00 0.00 6.53
10 11 2.684001 TGGTAGTAGGTCATTTGCCG 57.316 50.000 0.00 0.00 0.00 5.69
11 12 6.183360 GGTTTTATGGTAGTAGGTCATTTGCC 60.183 42.308 0.00 0.00 0.00 4.52
12 13 6.602009 AGGTTTTATGGTAGTAGGTCATTTGC 59.398 38.462 0.00 0.00 0.00 3.68
13 14 9.326413 CTAGGTTTTATGGTAGTAGGTCATTTG 57.674 37.037 0.00 0.00 0.00 2.32
14 15 7.991460 GCTAGGTTTTATGGTAGTAGGTCATTT 59.009 37.037 0.00 0.00 0.00 2.32
15 16 7.347485 AGCTAGGTTTTATGGTAGTAGGTCATT 59.653 37.037 0.00 0.00 0.00 2.57
16 17 6.844917 AGCTAGGTTTTATGGTAGTAGGTCAT 59.155 38.462 0.00 0.00 0.00 3.06
17 18 6.200114 AGCTAGGTTTTATGGTAGTAGGTCA 58.800 40.000 0.00 0.00 0.00 4.02
18 19 6.728089 AGCTAGGTTTTATGGTAGTAGGTC 57.272 41.667 0.00 0.00 0.00 3.85
59 390 5.590530 AGATCTACTCCTTACAAGCACAG 57.409 43.478 0.00 0.00 0.00 3.66
105 451 2.266376 TAGCGCGGCACTAGTGTCTG 62.266 60.000 24.20 20.08 31.96 3.51
116 462 6.774717 CAATATAAATATTGTTAGCGCGGC 57.225 37.500 8.83 0.00 42.78 6.53
160 506 9.591792 CAAGATTCTCAACAACTAGATGATGTA 57.408 33.333 7.05 0.00 31.22 2.29
187 533 8.443953 AAATCTACTAATGATCCAAAGCAGTC 57.556 34.615 0.00 0.00 0.00 3.51
250 596 2.653890 CCACGTGCACTCTGAAAATTG 58.346 47.619 16.19 0.00 0.00 2.32
251 597 1.001378 GCCACGTGCACTCTGAAAATT 60.001 47.619 16.19 0.00 40.77 1.82
252 598 0.593128 GCCACGTGCACTCTGAAAAT 59.407 50.000 16.19 0.00 40.77 1.82
266 612 2.241722 CTTACGAAATGCAAAGCCACG 58.758 47.619 0.00 0.00 0.00 4.94
274 620 6.035112 GGTGAAAAACAAACTTACGAAATGCA 59.965 34.615 0.00 0.00 0.00 3.96
276 622 7.700656 AGAGGTGAAAAACAAACTTACGAAATG 59.299 33.333 0.00 0.00 0.00 2.32
289 635 7.873719 TTCAAGTTATCAGAGGTGAAAAACA 57.126 32.000 6.71 0.00 36.09 2.83
296 645 6.538021 CAGAGGAATTCAAGTTATCAGAGGTG 59.462 42.308 7.93 0.00 0.00 4.00
297 646 6.648192 CAGAGGAATTCAAGTTATCAGAGGT 58.352 40.000 7.93 0.00 0.00 3.85
304 653 2.945668 GCCGCAGAGGAATTCAAGTTAT 59.054 45.455 7.93 0.00 45.00 1.89
319 668 1.382522 AGTATGGTCATTTGCCGCAG 58.617 50.000 0.00 0.00 0.00 5.18
320 669 1.832883 AAGTATGGTCATTTGCCGCA 58.167 45.000 0.00 0.00 0.00 5.69
321 670 2.939460 AAAGTATGGTCATTTGCCGC 57.061 45.000 0.00 0.00 0.00 6.53
322 671 5.123186 TCAGTTAAAGTATGGTCATTTGCCG 59.877 40.000 0.00 0.00 0.00 5.69
323 672 6.509418 TCAGTTAAAGTATGGTCATTTGCC 57.491 37.500 0.00 0.00 0.00 4.52
324 673 8.986477 ATTTCAGTTAAAGTATGGTCATTTGC 57.014 30.769 0.00 0.00 0.00 3.68
357 706 6.310711 CAGAGTTTACGGATAGGAACTTGTTC 59.689 42.308 5.03 5.03 41.75 3.18
380 729 7.915397 AGCAAAAGTACAATGTTTTCTGTACAG 59.085 33.333 17.17 17.17 46.79 2.74
413 762 1.702957 TCCTCCATGAACCCTTCGTTT 59.297 47.619 0.00 0.00 33.74 3.60
423 3324 2.106566 GCTCAGTCTCTCCTCCATGAA 58.893 52.381 0.00 0.00 0.00 2.57
430 3331 1.709578 TGTGTTGCTCAGTCTCTCCT 58.290 50.000 0.00 0.00 0.00 3.69
548 3454 4.500887 GCTCGGTCCTGTATTAACATGCTA 60.501 45.833 0.00 0.00 34.37 3.49
553 3459 1.483415 GGGCTCGGTCCTGTATTAACA 59.517 52.381 0.00 0.00 0.00 2.41
600 3506 5.220453 CGTTCATTATTTTTGCCAGGAATGC 60.220 40.000 0.00 0.00 0.00 3.56
601 3507 5.220453 GCGTTCATTATTTTTGCCAGGAATG 60.220 40.000 0.00 0.00 0.00 2.67
602 3508 4.869861 GCGTTCATTATTTTTGCCAGGAAT 59.130 37.500 0.00 0.00 0.00 3.01
603 3509 4.241681 GCGTTCATTATTTTTGCCAGGAA 58.758 39.130 0.00 0.00 0.00 3.36
604 3510 3.671971 CGCGTTCATTATTTTTGCCAGGA 60.672 43.478 0.00 0.00 0.00 3.86
700 3613 8.873830 CACGAATTTATCATACCTATAGCAAGG 58.126 37.037 0.00 0.00 42.82 3.61
701 3614 9.424319 ACACGAATTTATCATACCTATAGCAAG 57.576 33.333 0.00 0.00 0.00 4.01
702 3615 9.419297 GACACGAATTTATCATACCTATAGCAA 57.581 33.333 0.00 0.00 0.00 3.91
703 3616 7.753580 CGACACGAATTTATCATACCTATAGCA 59.246 37.037 0.00 0.00 0.00 3.49
704 3617 7.966753 TCGACACGAATTTATCATACCTATAGC 59.033 37.037 0.00 0.00 31.06 2.97
705 3618 9.836076 TTCGACACGAATTTATCATACCTATAG 57.164 33.333 2.48 0.00 41.05 1.31
725 3638 3.861276 AATCGTATGGAGTGTTCGACA 57.139 42.857 0.00 0.00 33.55 4.35
726 3639 5.007430 TCTCTAATCGTATGGAGTGTTCGAC 59.993 44.000 0.00 0.00 33.55 4.20
727 3640 5.007430 GTCTCTAATCGTATGGAGTGTTCGA 59.993 44.000 0.00 0.00 35.14 3.71
728 3641 5.206299 GTCTCTAATCGTATGGAGTGTTCG 58.794 45.833 4.22 0.00 0.00 3.95
729 3642 6.132791 TGTCTCTAATCGTATGGAGTGTTC 57.867 41.667 4.22 0.00 0.00 3.18
730 3643 5.450688 GCTGTCTCTAATCGTATGGAGTGTT 60.451 44.000 4.22 0.00 0.00 3.32
731 3644 4.036971 GCTGTCTCTAATCGTATGGAGTGT 59.963 45.833 4.22 0.00 0.00 3.55
732 3645 4.541779 GCTGTCTCTAATCGTATGGAGTG 58.458 47.826 4.22 0.00 0.00 3.51
733 3646 3.570550 GGCTGTCTCTAATCGTATGGAGT 59.429 47.826 4.22 0.00 0.00 3.85
734 3647 3.570125 TGGCTGTCTCTAATCGTATGGAG 59.430 47.826 0.00 0.00 0.00 3.86
735 3648 3.562182 TGGCTGTCTCTAATCGTATGGA 58.438 45.455 0.00 0.00 0.00 3.41
736 3649 4.527509 ATGGCTGTCTCTAATCGTATGG 57.472 45.455 0.00 0.00 0.00 2.74
737 3650 6.013842 TGTATGGCTGTCTCTAATCGTATG 57.986 41.667 0.00 0.00 0.00 2.39
738 3651 5.184096 CCTGTATGGCTGTCTCTAATCGTAT 59.816 44.000 0.00 0.00 0.00 3.06
739 3652 4.519350 CCTGTATGGCTGTCTCTAATCGTA 59.481 45.833 0.00 0.00 0.00 3.43
740 3653 3.319405 CCTGTATGGCTGTCTCTAATCGT 59.681 47.826 0.00 0.00 0.00 3.73
741 3654 3.570125 TCCTGTATGGCTGTCTCTAATCG 59.430 47.826 0.00 0.00 35.26 3.34
742 3655 5.736951 ATCCTGTATGGCTGTCTCTAATC 57.263 43.478 0.00 0.00 35.26 1.75
743 3656 5.604231 TGAATCCTGTATGGCTGTCTCTAAT 59.396 40.000 0.00 0.00 35.26 1.73
744 3657 4.962362 TGAATCCTGTATGGCTGTCTCTAA 59.038 41.667 0.00 0.00 35.26 2.10
745 3658 4.546674 TGAATCCTGTATGGCTGTCTCTA 58.453 43.478 0.00 0.00 35.26 2.43
746 3659 3.378512 TGAATCCTGTATGGCTGTCTCT 58.621 45.455 0.00 0.00 35.26 3.10
747 3660 3.133721 ACTGAATCCTGTATGGCTGTCTC 59.866 47.826 0.00 0.00 35.26 3.36
748 3661 3.110705 ACTGAATCCTGTATGGCTGTCT 58.889 45.455 0.00 0.00 35.26 3.41
749 3662 3.550437 ACTGAATCCTGTATGGCTGTC 57.450 47.619 0.00 0.00 35.26 3.51
750 3663 4.012374 CAAACTGAATCCTGTATGGCTGT 58.988 43.478 0.00 0.00 35.26 4.40
751 3664 4.012374 ACAAACTGAATCCTGTATGGCTG 58.988 43.478 0.00 0.00 35.26 4.85
752 3665 4.012374 CACAAACTGAATCCTGTATGGCT 58.988 43.478 0.00 0.00 35.26 4.75
753 3666 3.129287 CCACAAACTGAATCCTGTATGGC 59.871 47.826 0.00 0.00 35.26 4.40
754 3667 3.696051 CCCACAAACTGAATCCTGTATGG 59.304 47.826 0.00 0.00 37.10 2.74
755 3668 3.129287 GCCCACAAACTGAATCCTGTATG 59.871 47.826 0.00 0.00 0.00 2.39
756 3669 3.356290 GCCCACAAACTGAATCCTGTAT 58.644 45.455 0.00 0.00 0.00 2.29
757 3670 2.554344 GGCCCACAAACTGAATCCTGTA 60.554 50.000 0.00 0.00 0.00 2.74
758 3671 1.620822 GCCCACAAACTGAATCCTGT 58.379 50.000 0.00 0.00 0.00 4.00
759 3672 0.890683 GGCCCACAAACTGAATCCTG 59.109 55.000 0.00 0.00 0.00 3.86
760 3673 0.251787 GGGCCCACAAACTGAATCCT 60.252 55.000 19.95 0.00 0.00 3.24
761 3674 0.251787 AGGGCCCACAAACTGAATCC 60.252 55.000 27.56 0.00 0.00 3.01
762 3675 2.290960 ACTAGGGCCCACAAACTGAATC 60.291 50.000 27.56 0.00 0.00 2.52
763 3676 1.710809 ACTAGGGCCCACAAACTGAAT 59.289 47.619 27.56 0.25 0.00 2.57
764 3677 1.145571 ACTAGGGCCCACAAACTGAA 58.854 50.000 27.56 0.00 0.00 3.02
765 3678 1.626825 GTACTAGGGCCCACAAACTGA 59.373 52.381 27.56 0.00 0.00 3.41
766 3679 1.628846 AGTACTAGGGCCCACAAACTG 59.371 52.381 27.56 7.80 0.00 3.16
767 3680 2.040342 AGTACTAGGGCCCACAAACT 57.960 50.000 27.56 18.75 0.00 2.66
768 3681 2.873094 AAGTACTAGGGCCCACAAAC 57.127 50.000 27.56 16.65 0.00 2.93
769 3682 3.773119 CTCTAAGTACTAGGGCCCACAAA 59.227 47.826 27.56 3.19 0.00 2.83
770 3683 3.012047 TCTCTAAGTACTAGGGCCCACAA 59.988 47.826 27.56 8.08 0.00 3.33
771 3684 2.584031 TCTCTAAGTACTAGGGCCCACA 59.416 50.000 27.56 10.69 0.00 4.17
772 3685 3.309600 TCTCTAAGTACTAGGGCCCAC 57.690 52.381 27.56 13.93 0.00 4.61
773 3686 3.465966 TCATCTCTAAGTACTAGGGCCCA 59.534 47.826 27.56 9.36 0.00 5.36
774 3687 4.115398 TCATCTCTAAGTACTAGGGCCC 57.885 50.000 16.46 16.46 0.00 5.80
775 3688 5.186215 GGAATCATCTCTAAGTACTAGGGCC 59.814 48.000 0.00 0.00 0.00 5.80
776 3689 5.775701 TGGAATCATCTCTAAGTACTAGGGC 59.224 44.000 0.00 0.00 0.00 5.19
777 3690 7.007723 ACTGGAATCATCTCTAAGTACTAGGG 58.992 42.308 0.00 0.00 0.00 3.53
778 3691 7.942341 AGACTGGAATCATCTCTAAGTACTAGG 59.058 40.741 0.00 0.00 0.00 3.02
779 3692 8.783093 CAGACTGGAATCATCTCTAAGTACTAG 58.217 40.741 0.00 0.00 0.00 2.57
780 3693 8.495260 TCAGACTGGAATCATCTCTAAGTACTA 58.505 37.037 1.81 0.00 0.00 1.82
781 3694 7.350382 TCAGACTGGAATCATCTCTAAGTACT 58.650 38.462 1.81 0.00 0.00 2.73
782 3695 7.575414 TCAGACTGGAATCATCTCTAAGTAC 57.425 40.000 1.81 0.00 0.00 2.73
783 3696 7.174080 CGATCAGACTGGAATCATCTCTAAGTA 59.826 40.741 1.81 0.00 0.00 2.24
784 3697 6.016360 CGATCAGACTGGAATCATCTCTAAGT 60.016 42.308 1.81 0.00 0.00 2.24
785 3698 6.016360 ACGATCAGACTGGAATCATCTCTAAG 60.016 42.308 1.81 0.00 0.00 2.18
786 3699 5.830457 ACGATCAGACTGGAATCATCTCTAA 59.170 40.000 1.81 0.00 0.00 2.10
787 3700 5.380900 ACGATCAGACTGGAATCATCTCTA 58.619 41.667 1.81 0.00 0.00 2.43
788 3701 4.214310 ACGATCAGACTGGAATCATCTCT 58.786 43.478 1.81 0.00 0.00 3.10
789 3702 4.582701 ACGATCAGACTGGAATCATCTC 57.417 45.455 1.81 0.00 0.00 2.75
790 3703 6.662865 AATACGATCAGACTGGAATCATCT 57.337 37.500 1.81 0.00 0.00 2.90
791 3704 8.867935 CAATAATACGATCAGACTGGAATCATC 58.132 37.037 1.81 0.00 0.00 2.92
792 3705 8.370940 ACAATAATACGATCAGACTGGAATCAT 58.629 33.333 1.81 0.00 0.00 2.45
793 3706 7.726216 ACAATAATACGATCAGACTGGAATCA 58.274 34.615 1.81 0.00 0.00 2.57
794 3707 7.329717 GGACAATAATACGATCAGACTGGAATC 59.670 40.741 1.81 0.00 0.00 2.52
795 3708 7.155328 GGACAATAATACGATCAGACTGGAAT 58.845 38.462 1.81 0.00 0.00 3.01
796 3709 6.513180 GGACAATAATACGATCAGACTGGAA 58.487 40.000 1.81 0.00 0.00 3.53
797 3710 5.278315 CGGACAATAATACGATCAGACTGGA 60.278 44.000 1.81 0.00 0.00 3.86
798 3711 4.917998 CGGACAATAATACGATCAGACTGG 59.082 45.833 1.81 0.00 0.00 4.00
799 3712 5.625721 GTCGGACAATAATACGATCAGACTG 59.374 44.000 2.62 0.00 37.69 3.51
800 3713 5.560375 CGTCGGACAATAATACGATCAGACT 60.560 44.000 9.10 0.00 37.69 3.24
801 3714 4.611782 CGTCGGACAATAATACGATCAGAC 59.388 45.833 9.10 0.00 37.69 3.51
802 3715 4.512571 TCGTCGGACAATAATACGATCAGA 59.487 41.667 9.10 0.00 37.63 3.27
803 3716 4.779987 TCGTCGGACAATAATACGATCAG 58.220 43.478 9.10 0.00 37.63 2.90
804 3717 4.512571 TCTCGTCGGACAATAATACGATCA 59.487 41.667 9.10 0.00 41.24 2.92
805 3718 5.027206 TCTCGTCGGACAATAATACGATC 57.973 43.478 9.10 0.00 41.24 3.69
806 3719 5.428496 TTCTCGTCGGACAATAATACGAT 57.572 39.130 9.10 0.00 41.24 3.73
807 3720 4.260907 CCTTCTCGTCGGACAATAATACGA 60.261 45.833 9.10 0.00 39.99 3.43
808 3721 3.973135 CCTTCTCGTCGGACAATAATACG 59.027 47.826 9.10 0.00 34.99 3.06
809 3722 3.734735 GCCTTCTCGTCGGACAATAATAC 59.265 47.826 9.10 0.00 0.00 1.89
810 3723 3.382227 TGCCTTCTCGTCGGACAATAATA 59.618 43.478 9.10 0.00 0.00 0.98
811 3724 2.167693 TGCCTTCTCGTCGGACAATAAT 59.832 45.455 9.10 0.00 0.00 1.28
812 3725 1.546923 TGCCTTCTCGTCGGACAATAA 59.453 47.619 9.10 0.00 0.00 1.40
813 3726 1.179152 TGCCTTCTCGTCGGACAATA 58.821 50.000 9.10 0.00 0.00 1.90
814 3727 0.537188 ATGCCTTCTCGTCGGACAAT 59.463 50.000 9.10 0.00 0.00 2.71
815 3728 0.108804 GATGCCTTCTCGTCGGACAA 60.109 55.000 9.10 0.00 0.00 3.18
816 3729 1.511305 GATGCCTTCTCGTCGGACA 59.489 57.895 9.10 0.00 0.00 4.02
817 3730 1.586564 CGATGCCTTCTCGTCGGAC 60.587 63.158 0.00 0.00 40.65 4.79
818 3731 0.745486 TACGATGCCTTCTCGTCGGA 60.745 55.000 1.17 0.00 45.63 4.55
819 3732 0.591741 GTACGATGCCTTCTCGTCGG 60.592 60.000 1.17 0.00 45.63 4.79
820 3733 0.924363 CGTACGATGCCTTCTCGTCG 60.924 60.000 10.44 4.12 45.63 5.12
821 3734 1.201098 GCGTACGATGCCTTCTCGTC 61.201 60.000 21.65 0.00 45.63 4.20
823 3736 1.226575 TGCGTACGATGCCTTCTCG 60.227 57.895 21.65 0.00 41.77 4.04
824 3737 0.457853 TGTGCGTACGATGCCTTCTC 60.458 55.000 21.65 0.65 0.00 2.87
825 3738 0.458543 CTGTGCGTACGATGCCTTCT 60.459 55.000 21.65 0.00 0.00 2.85
826 3739 0.736325 ACTGTGCGTACGATGCCTTC 60.736 55.000 21.65 0.00 0.00 3.46
827 3740 0.528924 TACTGTGCGTACGATGCCTT 59.471 50.000 21.65 0.00 0.00 4.35
828 3741 0.100682 CTACTGTGCGTACGATGCCT 59.899 55.000 21.65 0.00 0.00 4.75
829 3742 0.179145 ACTACTGTGCGTACGATGCC 60.179 55.000 21.65 0.89 0.00 4.40
830 3743 1.625616 AACTACTGTGCGTACGATGC 58.374 50.000 21.65 8.31 0.00 3.91
831 3744 2.275510 CGAAACTACTGTGCGTACGATG 59.724 50.000 21.65 7.54 0.00 3.84
832 3745 2.095567 ACGAAACTACTGTGCGTACGAT 60.096 45.455 21.65 0.40 36.65 3.73
833 3746 1.264020 ACGAAACTACTGTGCGTACGA 59.736 47.619 21.65 0.80 36.65 3.43
834 3747 1.381100 CACGAAACTACTGTGCGTACG 59.619 52.381 11.84 11.84 36.65 3.67
835 3748 2.388121 ACACGAAACTACTGTGCGTAC 58.612 47.619 0.00 0.00 36.65 3.67
836 3749 2.780065 ACACGAAACTACTGTGCGTA 57.220 45.000 0.00 0.00 36.65 4.42
837 3750 2.033801 AGTACACGAAACTACTGTGCGT 59.966 45.455 0.00 0.00 38.12 5.24
838 3751 2.404029 CAGTACACGAAACTACTGTGCG 59.596 50.000 0.00 0.00 36.58 5.34
842 3755 5.625251 ACGATACAGTACACGAAACTACTG 58.375 41.667 13.65 3.76 43.75 2.74
843 3756 5.869753 ACGATACAGTACACGAAACTACT 57.130 39.130 13.65 0.00 0.00 2.57
844 3757 5.284660 CCAACGATACAGTACACGAAACTAC 59.715 44.000 13.65 0.00 0.00 2.73
845 3758 5.048782 ACCAACGATACAGTACACGAAACTA 60.049 40.000 13.65 0.00 0.00 2.24
846 3759 4.232221 CCAACGATACAGTACACGAAACT 58.768 43.478 13.65 0.00 0.00 2.66
847 3760 3.983344 ACCAACGATACAGTACACGAAAC 59.017 43.478 13.65 0.00 0.00 2.78
848 3761 4.229096 GACCAACGATACAGTACACGAAA 58.771 43.478 13.65 0.00 0.00 3.46
849 3762 3.366273 GGACCAACGATACAGTACACGAA 60.366 47.826 13.65 0.00 0.00 3.85
850 3763 2.162208 GGACCAACGATACAGTACACGA 59.838 50.000 13.65 0.00 0.00 4.35
851 3764 2.523015 GGACCAACGATACAGTACACG 58.477 52.381 0.00 7.26 0.00 4.49
852 3765 2.095059 ACGGACCAACGATACAGTACAC 60.095 50.000 0.00 0.00 37.61 2.90
940 3854 4.280436 TGACTGTATCCGAATGTTTGGT 57.720 40.909 0.00 0.00 33.22 3.67
1020 3952 4.514577 AGAACGAGGCCGCGGATG 62.515 66.667 33.48 17.09 39.95 3.51
1316 4260 1.658114 CAGGTGTCGGTGAAGACGA 59.342 57.895 0.00 0.00 43.70 4.20
1980 4942 1.143813 GGATCATGTCCCCCATCACT 58.856 55.000 0.00 0.00 41.50 3.41
2024 4986 1.153188 ATGGCGCCGTTGATGATCA 60.153 52.632 23.90 0.00 0.00 2.92
2095 5057 4.747529 GTGGTCCGGCCGGTACAC 62.748 72.222 38.06 38.06 41.21 2.90
2249 5211 1.304547 AGCTCTGTCGGGTACTGCT 60.305 57.895 0.00 0.00 32.53 4.24
2298 5260 3.470567 GCGTCGTTGGAGCTGTCG 61.471 66.667 0.00 0.00 0.00 4.35
2322 5284 0.477597 AGGGGTGGGTGATCTTTGGA 60.478 55.000 0.00 0.00 0.00 3.53
2376 5338 1.985614 CTGCAGGGTCATGGAGTCA 59.014 57.895 5.57 0.00 34.24 3.41
2382 5344 0.742281 CCTCGAACTGCAGGGTCATG 60.742 60.000 19.93 9.68 0.00 3.07
2458 5420 3.125573 CGACACGAGGCCGAGAGA 61.126 66.667 7.50 0.00 39.50 3.10
2771 5753 2.031683 GGTGACAAAAACCACACGAGAG 59.968 50.000 0.00 0.00 37.65 3.20
2823 5808 2.544277 CGGTAGGACTGAACAACGAACA 60.544 50.000 0.00 0.00 0.00 3.18
2838 5823 3.118454 CCAAGCACGCACGGTAGG 61.118 66.667 0.00 0.00 0.00 3.18
2876 5869 3.283259 TCGCTCTCTCTGTCCTATGAA 57.717 47.619 0.00 0.00 0.00 2.57
2877 5870 3.283259 TTCGCTCTCTCTGTCCTATGA 57.717 47.619 0.00 0.00 0.00 2.15
2878 5871 3.243367 CCTTTCGCTCTCTCTGTCCTATG 60.243 52.174 0.00 0.00 0.00 2.23
2879 5872 2.955660 CCTTTCGCTCTCTCTGTCCTAT 59.044 50.000 0.00 0.00 0.00 2.57
2880 5873 2.370349 CCTTTCGCTCTCTCTGTCCTA 58.630 52.381 0.00 0.00 0.00 2.94
2914 5907 1.518903 GCTGAGCCGAGCACCTTTTT 61.519 55.000 0.00 0.00 38.95 1.94
2915 5908 1.968540 GCTGAGCCGAGCACCTTTT 60.969 57.895 0.00 0.00 38.95 2.27
2916 5909 2.359230 GCTGAGCCGAGCACCTTT 60.359 61.111 0.00 0.00 38.95 3.11
2917 5910 3.317571 AGCTGAGCCGAGCACCTT 61.318 61.111 0.00 0.00 41.83 3.50
2918 5911 4.079850 CAGCTGAGCCGAGCACCT 62.080 66.667 8.42 0.00 41.83 4.00
2919 5912 4.074526 TCAGCTGAGCCGAGCACC 62.075 66.667 13.74 0.00 41.83 5.01
2920 5913 2.508887 CTCAGCTGAGCCGAGCAC 60.509 66.667 29.79 0.00 41.83 4.40
2921 5914 2.677875 TCTCAGCTGAGCCGAGCA 60.678 61.111 34.48 16.72 41.83 4.26
2922 5915 2.202730 GTCTCAGCTGAGCCGAGC 60.203 66.667 34.48 18.86 41.80 5.03
2923 5916 1.139308 CAGTCTCAGCTGAGCCGAG 59.861 63.158 34.48 19.91 41.80 4.63
2924 5917 1.303643 TCAGTCTCAGCTGAGCCGA 60.304 57.895 34.48 26.10 40.23 5.54
2925 5918 3.282271 TCAGTCTCAGCTGAGCCG 58.718 61.111 34.48 24.51 40.23 5.52
2929 5922 2.435422 CTCACTCTCAGTCTCAGCTGA 58.565 52.381 17.19 17.19 42.56 4.26
2930 5923 1.473677 CCTCACTCTCAGTCTCAGCTG 59.526 57.143 7.63 7.63 37.81 4.24
2931 5924 1.838112 CCTCACTCTCAGTCTCAGCT 58.162 55.000 0.00 0.00 0.00 4.24
2932 5925 0.173255 GCCTCACTCTCAGTCTCAGC 59.827 60.000 0.00 0.00 0.00 4.26
2933 5926 1.838112 AGCCTCACTCTCAGTCTCAG 58.162 55.000 0.00 0.00 0.00 3.35
2934 5927 2.573915 TCTAGCCTCACTCTCAGTCTCA 59.426 50.000 0.00 0.00 0.00 3.27
2935 5928 3.275617 TCTAGCCTCACTCTCAGTCTC 57.724 52.381 0.00 0.00 0.00 3.36
2936 5929 3.951563 ATCTAGCCTCACTCTCAGTCT 57.048 47.619 0.00 0.00 0.00 3.24
2937 5930 3.951037 TGAATCTAGCCTCACTCTCAGTC 59.049 47.826 0.00 0.00 0.00 3.51
2938 5931 3.699038 GTGAATCTAGCCTCACTCTCAGT 59.301 47.826 13.77 0.00 39.11 3.41
2939 5932 3.243035 CGTGAATCTAGCCTCACTCTCAG 60.243 52.174 17.03 3.42 39.87 3.35
2995 6010 1.063567 AGGAGCAGATTCGTCTAGGGT 60.064 52.381 0.00 0.00 0.00 4.34
3005 6020 2.687610 CCAGGCCCAGGAGCAGATT 61.688 63.158 5.93 0.00 0.00 2.40
3018 6033 2.046285 AAATGCACGTAGGCCAGGC 61.046 57.895 5.01 1.26 0.00 4.85
3028 6053 2.532235 CATGAATCCACCAAATGCACG 58.468 47.619 0.00 0.00 0.00 5.34
3044 6069 2.048316 TTCGACGCAGCAGCATGA 60.048 55.556 0.82 0.00 39.69 3.07
3179 6234 4.738998 CCGCAACCATCCCTGCCA 62.739 66.667 0.00 0.00 35.01 4.92
3183 6238 2.676471 GCAACCGCAACCATCCCT 60.676 61.111 0.00 0.00 38.36 4.20
3213 6268 0.459585 AATCATTCCCGTGACGTCCG 60.460 55.000 14.12 15.50 0.00 4.79
3264 6319 2.752358 CAAGCTGACTGCCCAGGA 59.248 61.111 0.02 0.00 44.23 3.86
3267 6322 3.888460 TGCCAAGCTGACTGCCCA 61.888 61.111 0.02 0.00 44.23 5.36
3268 6323 3.368571 GTGCCAAGCTGACTGCCC 61.369 66.667 0.02 0.00 44.23 5.36
3290 6345 1.522580 GAGACCGCAGCCATTCCTC 60.523 63.158 0.00 0.00 0.00 3.71
3293 6348 2.892425 CGGAGACCGCAGCCATTC 60.892 66.667 0.00 0.00 41.17 2.67
3311 6372 1.682344 AGGATTTTCCCTTGGGCGC 60.682 57.895 0.00 0.00 37.19 6.53
3316 6377 0.527565 CACGCCAGGATTTTCCCTTG 59.472 55.000 0.00 0.00 37.19 3.61
3339 6400 2.740714 GCACGACGTGAAGGCATCC 61.741 63.158 31.08 7.18 35.23 3.51
3344 6405 2.356313 AGCTGCACGACGTGAAGG 60.356 61.111 31.99 20.23 39.48 3.46
3354 6415 4.374702 CCGTTCACGCAGCTGCAC 62.375 66.667 36.03 25.14 42.21 4.57
3363 6424 2.152699 CAGCTAGCGACCGTTCACG 61.153 63.158 9.55 0.00 39.44 4.35
3406 6467 3.047877 CCGACCAACAACGGCTCC 61.048 66.667 0.00 0.00 42.55 4.70
3438 6499 9.289303 GCATTTTTGTACGATACATTCTTGATT 57.711 29.630 0.00 0.00 38.68 2.57
3444 6505 6.959311 ACGAAGCATTTTTGTACGATACATTC 59.041 34.615 0.00 0.00 38.68 2.67
3457 6518 5.548406 ACTACCAGTAGACGAAGCATTTTT 58.452 37.500 11.71 0.00 36.97 1.94
3472 6533 8.434392 TGTTTTGGAGTTTTAGATACTACCAGT 58.566 33.333 0.00 0.00 30.23 4.00
3473 6534 8.842358 TGTTTTGGAGTTTTAGATACTACCAG 57.158 34.615 0.00 0.00 30.23 4.00
3474 6535 8.434392 ACTGTTTTGGAGTTTTAGATACTACCA 58.566 33.333 0.00 0.00 0.00 3.25
3476 6537 9.269453 ACACTGTTTTGGAGTTTTAGATACTAC 57.731 33.333 0.00 0.00 0.00 2.73
3478 6539 9.490379 CTACACTGTTTTGGAGTTTTAGATACT 57.510 33.333 0.00 0.00 0.00 2.12
3479 6540 8.718734 CCTACACTGTTTTGGAGTTTTAGATAC 58.281 37.037 0.00 0.00 0.00 2.24
3480 6541 8.653191 TCCTACACTGTTTTGGAGTTTTAGATA 58.347 33.333 0.00 0.00 0.00 1.98
3481 6542 7.514721 TCCTACACTGTTTTGGAGTTTTAGAT 58.485 34.615 0.00 0.00 0.00 1.98
3482 6543 6.891388 TCCTACACTGTTTTGGAGTTTTAGA 58.109 36.000 0.00 0.00 0.00 2.10
3483 6544 7.562454 TTCCTACACTGTTTTGGAGTTTTAG 57.438 36.000 0.00 0.00 0.00 1.85
3484 6545 7.996644 AGATTCCTACACTGTTTTGGAGTTTTA 59.003 33.333 0.00 0.00 0.00 1.52
3485 6546 6.833933 AGATTCCTACACTGTTTTGGAGTTTT 59.166 34.615 0.00 0.00 0.00 2.43
3486 6547 6.365520 AGATTCCTACACTGTTTTGGAGTTT 58.634 36.000 0.00 0.00 0.00 2.66
3487 6548 5.941788 AGATTCCTACACTGTTTTGGAGTT 58.058 37.500 0.00 0.00 0.00 3.01
3488 6549 5.071788 TGAGATTCCTACACTGTTTTGGAGT 59.928 40.000 0.00 0.00 0.00 3.85
3489 6550 5.551233 TGAGATTCCTACACTGTTTTGGAG 58.449 41.667 0.00 0.00 0.00 3.86
3490 6551 5.560722 TGAGATTCCTACACTGTTTTGGA 57.439 39.130 0.00 0.00 0.00 3.53
3491 6552 7.331026 TCTATGAGATTCCTACACTGTTTTGG 58.669 38.462 0.00 0.00 0.00 3.28
3492 6553 8.777865 TTCTATGAGATTCCTACACTGTTTTG 57.222 34.615 0.00 0.00 0.00 2.44
3493 6554 9.965902 AATTCTATGAGATTCCTACACTGTTTT 57.034 29.630 0.00 0.00 0.00 2.43
3494 6555 9.965902 AAATTCTATGAGATTCCTACACTGTTT 57.034 29.630 0.00 0.00 0.00 2.83
3495 6556 9.606631 GAAATTCTATGAGATTCCTACACTGTT 57.393 33.333 0.00 0.00 0.00 3.16
3496 6557 8.986991 AGAAATTCTATGAGATTCCTACACTGT 58.013 33.333 0.00 0.00 0.00 3.55
3547 6608 3.855858 ACCAAAGCGCTTCAAAGAAAAA 58.144 36.364 25.24 0.00 0.00 1.94
3548 6609 3.518634 ACCAAAGCGCTTCAAAGAAAA 57.481 38.095 25.24 0.00 0.00 2.29
3549 6610 3.518634 AACCAAAGCGCTTCAAAGAAA 57.481 38.095 25.24 0.00 0.00 2.52
3550 6611 3.518634 AAACCAAAGCGCTTCAAAGAA 57.481 38.095 25.24 0.00 0.00 2.52
3551 6612 4.846779 ATAAACCAAAGCGCTTCAAAGA 57.153 36.364 25.24 8.07 0.00 2.52
3552 6613 5.095490 CCTATAAACCAAAGCGCTTCAAAG 58.905 41.667 25.24 14.46 0.00 2.77
3553 6614 4.762765 TCCTATAAACCAAAGCGCTTCAAA 59.237 37.500 25.24 6.58 0.00 2.69
3554 6615 4.328536 TCCTATAAACCAAAGCGCTTCAA 58.671 39.130 25.24 5.83 0.00 2.69
3555 6616 3.945346 TCCTATAAACCAAAGCGCTTCA 58.055 40.909 25.24 5.09 0.00 3.02
3556 6617 4.201920 CCTTCCTATAAACCAAAGCGCTTC 60.202 45.833 25.24 0.00 0.00 3.86
3557 6618 3.694566 CCTTCCTATAAACCAAAGCGCTT 59.305 43.478 18.98 18.98 0.00 4.68
3558 6619 3.279434 CCTTCCTATAAACCAAAGCGCT 58.721 45.455 2.64 2.64 0.00 5.92
3559 6620 2.357952 CCCTTCCTATAAACCAAAGCGC 59.642 50.000 0.00 0.00 0.00 5.92
3560 6621 2.949644 CCCCTTCCTATAAACCAAAGCG 59.050 50.000 0.00 0.00 0.00 4.68
3561 6622 3.977312 ACCCCTTCCTATAAACCAAAGC 58.023 45.455 0.00 0.00 0.00 3.51
3562 6623 4.954202 GGAACCCCTTCCTATAAACCAAAG 59.046 45.833 0.00 0.00 42.72 2.77
3563 6624 4.938028 GGAACCCCTTCCTATAAACCAAA 58.062 43.478 0.00 0.00 42.72 3.28
3564 6625 4.596354 GGAACCCCTTCCTATAAACCAA 57.404 45.455 0.00 0.00 42.72 3.67
3574 6635 8.458951 TTTATATAGGAATAGGAACCCCTTCC 57.541 38.462 11.66 11.66 46.03 3.46
3625 6686 9.829507 GATGCATAGGATATAGCTAATGTTTCT 57.170 33.333 0.00 0.00 0.00 2.52
3626 6687 9.605275 TGATGCATAGGATATAGCTAATGTTTC 57.395 33.333 0.00 0.00 0.00 2.78
3627 6688 9.964354 TTGATGCATAGGATATAGCTAATGTTT 57.036 29.630 0.00 0.00 0.00 2.83
3628 6689 9.964354 TTTGATGCATAGGATATAGCTAATGTT 57.036 29.630 0.00 0.00 0.00 2.71
3640 6701 9.584008 AAAGAGATGTTATTTGATGCATAGGAT 57.416 29.630 0.00 0.00 0.00 3.24
3641 6702 8.985315 AAAGAGATGTTATTTGATGCATAGGA 57.015 30.769 0.00 0.00 0.00 2.94
3642 6703 9.064706 AGAAAGAGATGTTATTTGATGCATAGG 57.935 33.333 0.00 0.00 0.00 2.57
3644 6705 9.842775 AGAGAAAGAGATGTTATTTGATGCATA 57.157 29.630 0.00 0.00 0.00 3.14
3645 6706 8.749026 AGAGAAAGAGATGTTATTTGATGCAT 57.251 30.769 0.00 0.00 0.00 3.96
3646 6707 9.842775 ATAGAGAAAGAGATGTTATTTGATGCA 57.157 29.630 0.00 0.00 0.00 3.96
3657 6718 9.653516 TCTCAATTCCTATAGAGAAAGAGATGT 57.346 33.333 20.46 2.79 35.41 3.06
3666 6727 9.813826 TGACATGTATCTCAATTCCTATAGAGA 57.186 33.333 0.00 0.00 40.96 3.10
3671 6732 8.654094 TGTGATGACATGTATCTCAATTCCTAT 58.346 33.333 0.00 0.00 0.00 2.57
3672 6733 8.021898 TGTGATGACATGTATCTCAATTCCTA 57.978 34.615 0.00 0.00 0.00 2.94
3673 6734 6.892485 TGTGATGACATGTATCTCAATTCCT 58.108 36.000 0.00 0.00 0.00 3.36
3674 6735 7.741027 ATGTGATGACATGTATCTCAATTCC 57.259 36.000 16.62 4.75 41.52 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.