Multiple sequence alignment - TraesCS4D01G218300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G218300 chr4D 100.000 4043 0 0 1 4043 373859056 373855014 0.000000e+00 7467.0
1 TraesCS4D01G218300 chr4D 84.225 710 67 34 753 1440 373934085 373933399 0.000000e+00 649.0
2 TraesCS4D01G218300 chr4D 97.297 37 1 0 3004 3040 3586210 3586174 3.370000e-06 63.9
3 TraesCS4D01G218300 chr4D 100.000 34 0 0 3004 3037 394385913 394385946 3.370000e-06 63.9
4 TraesCS4D01G218300 chr4A 93.648 1527 77 8 1 1515 90590195 90591713 0.000000e+00 2265.0
5 TraesCS4D01G218300 chr4A 89.335 647 41 13 2524 3152 90592193 90592829 0.000000e+00 787.0
6 TraesCS4D01G218300 chr4A 88.871 620 44 9 3420 4014 90593168 90593787 0.000000e+00 739.0
7 TraesCS4D01G218300 chr4A 82.997 694 69 34 753 1425 90518664 90519329 2.090000e-162 582.0
8 TraesCS4D01G218300 chr4A 96.124 129 3 2 2396 2523 90592017 90592144 4.090000e-50 209.0
9 TraesCS4D01G218300 chr4A 84.615 78 8 3 2965 3040 90423604 90423679 1.560000e-09 75.0
10 TraesCS4D01G218300 chr4A 83.333 72 12 0 2966 3037 75919881 75919952 2.610000e-07 67.6
11 TraesCS4D01G218300 chr4B 91.586 1545 102 13 1 1518 459948272 459946729 0.000000e+00 2108.0
12 TraesCS4D01G218300 chr4B 85.734 708 57 17 2524 3219 459946430 459945755 0.000000e+00 708.0
13 TraesCS4D01G218300 chr4B 82.620 748 72 37 753 1478 460032565 460031854 3.460000e-170 608.0
14 TraesCS4D01G218300 chr4B 84.887 397 29 14 3420 3799 459945471 459945089 4.940000e-99 372.0
15 TraesCS4D01G218300 chr4B 96.667 150 5 0 2246 2395 459946736 459946587 2.410000e-62 250.0
16 TraesCS4D01G218300 chr4B 87.582 153 7 4 3798 3940 459944966 459944816 2.500000e-37 167.0
17 TraesCS4D01G218300 chr4B 84.058 69 11 0 2969 3037 5468295 5468363 2.610000e-07 67.6
18 TraesCS4D01G218300 chr4B 83.333 72 12 0 2966 3037 484581784 484581855 2.610000e-07 67.6
19 TraesCS4D01G218300 chr3B 82.527 744 80 25 1513 2245 760553155 760553859 3.460000e-170 608.0
20 TraesCS4D01G218300 chrUn 92.913 127 9 0 1225 1351 478858017 478857891 6.900000e-43 185.0
21 TraesCS4D01G218300 chr1B 92.913 127 9 0 1225 1351 162806128 162806002 6.900000e-43 185.0
22 TraesCS4D01G218300 chr1A 92.913 127 9 0 1225 1351 101335543 101335417 6.900000e-43 185.0
23 TraesCS4D01G218300 chr1D 92.126 127 10 0 1225 1351 103473058 103473184 3.210000e-41 180.0
24 TraesCS4D01G218300 chr6D 92.105 114 9 0 993 1106 106048839 106048952 1.160000e-35 161.0
25 TraesCS4D01G218300 chr6A 91.453 117 10 0 993 1109 129316991 129317107 1.160000e-35 161.0
26 TraesCS4D01G218300 chr7B 88.889 126 10 3 969 1094 681849904 681850025 7.000000e-33 152.0
27 TraesCS4D01G218300 chr7A 91.667 108 9 0 999 1106 677871398 677871505 2.520000e-32 150.0
28 TraesCS4D01G218300 chr7A 97.143 35 0 1 1530 1563 681940468 681940434 1.570000e-04 58.4
29 TraesCS4D01G218300 chr2B 84.615 65 10 0 2969 3033 68585119 68585055 9.380000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G218300 chr4D 373855014 373859056 4042 True 7467 7467 100.0000 1 4043 1 chr4D.!!$R2 4042
1 TraesCS4D01G218300 chr4D 373933399 373934085 686 True 649 649 84.2250 753 1440 1 chr4D.!!$R3 687
2 TraesCS4D01G218300 chr4A 90590195 90593787 3592 False 1000 2265 91.9945 1 4014 4 chr4A.!!$F4 4013
3 TraesCS4D01G218300 chr4A 90518664 90519329 665 False 582 582 82.9970 753 1425 1 chr4A.!!$F3 672
4 TraesCS4D01G218300 chr4B 459944816 459948272 3456 True 721 2108 89.2912 1 3940 5 chr4B.!!$R2 3939
5 TraesCS4D01G218300 chr4B 460031854 460032565 711 True 608 608 82.6200 753 1478 1 chr4B.!!$R1 725
6 TraesCS4D01G218300 chr3B 760553155 760553859 704 False 608 608 82.5270 1513 2245 1 chr3B.!!$F1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.879090 GTTTAAAGGCAGGACACCGG 59.121 55.0 0.0 0.0 0.0 5.28 F
1505 1567 0.528017 GGATGTGCGACAGTCTCTCA 59.472 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1732 0.036306 AACGAAAGGCCCATCTCGTT 59.964 50.0 19.98 19.98 46.51 3.85 R
3087 3406 0.111061 TGATGGCATGATGCTACCCC 59.889 55.0 17.84 5.16 44.28 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 0.883814 CTCCAGGGCAGCGATGAATC 60.884 60.000 4.02 0.00 0.00 2.52
181 182 1.272258 TGTGGGCTAGGGTTTAAAGGC 60.272 52.381 0.00 0.00 35.21 4.35
182 183 1.077276 TGGGCTAGGGTTTAAAGGCA 58.923 50.000 0.00 0.00 37.53 4.75
183 184 1.005450 TGGGCTAGGGTTTAAAGGCAG 59.995 52.381 0.00 0.00 37.53 4.85
191 192 0.879090 GTTTAAAGGCAGGACACCGG 59.121 55.000 0.00 0.00 0.00 5.28
192 193 0.891904 TTTAAAGGCAGGACACCGGC 60.892 55.000 0.00 4.47 43.73 6.13
193 194 2.058125 TTAAAGGCAGGACACCGGCA 62.058 55.000 13.89 0.00 46.17 5.69
307 308 5.373812 AGTTGGAGAAAAAGTGAGGAAGA 57.626 39.130 0.00 0.00 0.00 2.87
337 341 7.810759 GCTATGTTTCGGGAAAAAGTCAAATTA 59.189 33.333 0.00 0.00 31.33 1.40
342 346 9.902196 GTTTCGGGAAAAAGTCAAATTATTAGA 57.098 29.630 0.00 0.00 31.33 2.10
390 394 5.109500 AGAAGAAGCCTAATCCCTCAAAG 57.891 43.478 0.00 0.00 0.00 2.77
399 403 5.624509 GCCTAATCCCTCAAAGCGAAAATTT 60.625 40.000 0.00 0.00 0.00 1.82
553 567 1.489230 ACCCTACCCATTCGATTGGTC 59.511 52.381 21.58 0.00 34.77 4.02
586 600 0.967887 CTCTCCGCTCCTCCTCAACA 60.968 60.000 0.00 0.00 0.00 3.33
965 1023 3.002371 GGGAAGGAGGAAGCAGGG 58.998 66.667 0.00 0.00 0.00 4.45
1201 1262 2.064014 GCTTTGGTTGATCTGCTTTGC 58.936 47.619 0.00 0.00 0.00 3.68
1202 1263 2.288640 GCTTTGGTTGATCTGCTTTGCT 60.289 45.455 0.00 0.00 0.00 3.91
1210 1271 1.198637 GATCTGCTTTGCTGTGTGGTC 59.801 52.381 0.00 0.00 0.00 4.02
1257 1318 1.449070 CAGCAGCGCCTCATCTTCA 60.449 57.895 2.29 0.00 0.00 3.02
1440 1501 2.666317 AGTAATGCATAAACCCCTGCC 58.334 47.619 0.00 0.00 37.59 4.85
1441 1502 2.024464 AGTAATGCATAAACCCCTGCCA 60.024 45.455 0.00 0.00 37.59 4.92
1450 1512 0.609131 AACCCCTGCCATGTTTCTCG 60.609 55.000 0.00 0.00 0.00 4.04
1505 1567 0.528017 GGATGTGCGACAGTCTCTCA 59.472 55.000 0.00 0.00 0.00 3.27
1509 1571 1.067565 TGTGCGACAGTCTCTCATTCC 60.068 52.381 0.00 0.00 0.00 3.01
1510 1572 1.067565 GTGCGACAGTCTCTCATTCCA 60.068 52.381 0.00 0.00 0.00 3.53
1511 1573 1.827344 TGCGACAGTCTCTCATTCCAT 59.173 47.619 0.00 0.00 0.00 3.41
1569 1631 1.606737 GCACCCTCTTATCCTGATCGC 60.607 57.143 0.00 0.00 0.00 4.58
1577 1639 0.764271 TATCCTGATCGCCCATGCAA 59.236 50.000 0.00 0.00 37.32 4.08
1578 1640 0.536687 ATCCTGATCGCCCATGCAAG 60.537 55.000 0.00 0.00 37.32 4.01
1581 1643 0.813184 CTGATCGCCCATGCAAGTTT 59.187 50.000 0.00 0.00 37.32 2.66
1582 1644 1.203052 CTGATCGCCCATGCAAGTTTT 59.797 47.619 0.00 0.00 37.32 2.43
1588 1650 1.340889 GCCCATGCAAGTTTTGACTCA 59.659 47.619 0.00 0.00 37.47 3.41
1614 1676 4.093011 AGATCTGTGCCAAGTCTTCTACT 58.907 43.478 0.00 0.00 41.49 2.57
1617 1679 1.270839 TGTGCCAAGTCTTCTACTGCC 60.271 52.381 0.00 0.00 38.88 4.85
1620 1682 1.002544 GCCAAGTCTTCTACTGCCAGT 59.997 52.381 1.54 1.54 38.88 4.00
1643 1705 2.680805 GCATTAGCAGGGCTAGTGAACA 60.681 50.000 20.47 0.00 46.86 3.18
1651 1713 2.492484 AGGGCTAGTGAACAGTAAGACG 59.508 50.000 0.00 0.00 0.00 4.18
1659 1721 3.087031 TGAACAGTAAGACGGGGAGTAG 58.913 50.000 0.00 0.00 0.00 2.57
1664 1726 4.590222 ACAGTAAGACGGGGAGTAGAAAAA 59.410 41.667 0.00 0.00 0.00 1.94
1670 1732 5.627135 AGACGGGGAGTAGAAAAATTGAAA 58.373 37.500 0.00 0.00 0.00 2.69
1676 1738 6.206048 GGGGAGTAGAAAAATTGAAAACGAGA 59.794 38.462 0.00 0.00 0.00 4.04
1684 1746 2.286365 TTGAAAACGAGATGGGCCTT 57.714 45.000 4.53 0.00 0.00 4.35
1697 1759 0.958876 GGGCCTTTCGTTGGGTACTG 60.959 60.000 0.84 0.00 0.00 2.74
1704 1766 2.357327 TCGTTGGGTACTGTTCATCG 57.643 50.000 0.00 0.00 0.00 3.84
1707 1769 3.119743 TCGTTGGGTACTGTTCATCGTAG 60.120 47.826 0.00 0.00 0.00 3.51
1708 1770 3.518590 GTTGGGTACTGTTCATCGTAGG 58.481 50.000 0.00 0.00 0.00 3.18
1709 1771 1.479323 TGGGTACTGTTCATCGTAGGC 59.521 52.381 0.00 0.00 0.00 3.93
1710 1772 1.479323 GGGTACTGTTCATCGTAGGCA 59.521 52.381 0.00 0.00 0.00 4.75
1713 1775 3.430374 GGTACTGTTCATCGTAGGCACAT 60.430 47.826 0.00 0.00 0.00 3.21
1714 1776 2.893637 ACTGTTCATCGTAGGCACATC 58.106 47.619 0.00 0.00 0.00 3.06
1715 1777 2.205074 CTGTTCATCGTAGGCACATCC 58.795 52.381 0.00 0.00 0.00 3.51
1722 1786 2.772191 TAGGCACATCCCCCGCAT 60.772 61.111 0.00 0.00 34.51 4.73
1739 1803 0.743688 CATCTGTCAGCGCTACCTCT 59.256 55.000 10.99 0.00 0.00 3.69
1794 1858 3.390967 TCCCAGTCAATTTCTCTGACACA 59.609 43.478 5.81 0.00 44.68 3.72
1795 1859 3.499918 CCCAGTCAATTTCTCTGACACAC 59.500 47.826 5.81 0.00 44.68 3.82
1796 1860 4.129380 CCAGTCAATTTCTCTGACACACA 58.871 43.478 5.81 0.00 44.68 3.72
1797 1861 4.024556 CCAGTCAATTTCTCTGACACACAC 60.025 45.833 5.81 0.00 44.68 3.82
1800 1864 3.561310 TCAATTTCTCTGACACACACAGC 59.439 43.478 0.00 0.00 35.61 4.40
1809 1873 0.034756 ACACACACAGCCGCTTCATA 59.965 50.000 0.00 0.00 0.00 2.15
1810 1874 1.339055 ACACACACAGCCGCTTCATAT 60.339 47.619 0.00 0.00 0.00 1.78
1811 1875 2.093711 ACACACACAGCCGCTTCATATA 60.094 45.455 0.00 0.00 0.00 0.86
1812 1876 2.285220 CACACACAGCCGCTTCATATAC 59.715 50.000 0.00 0.00 0.00 1.47
1813 1877 2.093711 ACACACAGCCGCTTCATATACA 60.094 45.455 0.00 0.00 0.00 2.29
1814 1878 2.285220 CACACAGCCGCTTCATATACAC 59.715 50.000 0.00 0.00 0.00 2.90
1816 1880 2.935849 CACAGCCGCTTCATATACACAA 59.064 45.455 0.00 0.00 0.00 3.33
1818 1882 2.287915 CAGCCGCTTCATATACACAACC 59.712 50.000 0.00 0.00 0.00 3.77
1820 1884 3.386726 AGCCGCTTCATATACACAACCTA 59.613 43.478 0.00 0.00 0.00 3.08
1821 1885 4.124238 GCCGCTTCATATACACAACCTAA 58.876 43.478 0.00 0.00 0.00 2.69
1822 1886 4.573201 GCCGCTTCATATACACAACCTAAA 59.427 41.667 0.00 0.00 0.00 1.85
1826 1897 6.183360 CGCTTCATATACACAACCTAAAACGT 60.183 38.462 0.00 0.00 0.00 3.99
1829 1900 9.537848 CTTCATATACACAACCTAAAACGTTTC 57.462 33.333 15.01 0.00 0.00 2.78
1849 1920 9.842444 ACGTTTCGTTTGATTCAATTAAAATTG 57.158 25.926 8.79 8.79 41.28 2.32
1867 1943 4.534647 ATTGAAGAGAGAGAGAGCCCTA 57.465 45.455 0.00 0.00 0.00 3.53
1871 1947 4.141574 TGAAGAGAGAGAGAGCCCTACTAC 60.142 50.000 0.00 0.00 0.00 2.73
1872 1948 3.665443 AGAGAGAGAGAGCCCTACTACT 58.335 50.000 0.00 0.00 0.00 2.57
1873 1949 4.823107 AGAGAGAGAGAGCCCTACTACTA 58.177 47.826 0.00 0.00 0.00 1.82
1874 1950 4.591924 AGAGAGAGAGAGCCCTACTACTAC 59.408 50.000 0.00 0.00 0.00 2.73
1875 1951 3.322828 AGAGAGAGAGCCCTACTACTACG 59.677 52.174 0.00 0.00 0.00 3.51
1876 1952 3.307506 AGAGAGAGCCCTACTACTACGA 58.692 50.000 0.00 0.00 0.00 3.43
1877 1953 3.905591 AGAGAGAGCCCTACTACTACGAT 59.094 47.826 0.00 0.00 0.00 3.73
1878 1954 3.998341 GAGAGAGCCCTACTACTACGATG 59.002 52.174 0.00 0.00 0.00 3.84
1879 1955 3.647113 AGAGAGCCCTACTACTACGATGA 59.353 47.826 0.00 0.00 0.00 2.92
1880 1956 3.998341 GAGAGCCCTACTACTACGATGAG 59.002 52.174 0.00 0.00 0.00 2.90
1881 1957 2.485038 GAGCCCTACTACTACGATGAGC 59.515 54.545 0.00 0.00 0.00 4.26
1882 1958 1.540707 GCCCTACTACTACGATGAGCC 59.459 57.143 0.00 0.00 0.00 4.70
1883 1959 2.814842 GCCCTACTACTACGATGAGCCT 60.815 54.545 0.00 0.00 0.00 4.58
1884 1960 3.558746 GCCCTACTACTACGATGAGCCTA 60.559 52.174 0.00 0.00 0.00 3.93
1885 1961 4.255301 CCCTACTACTACGATGAGCCTAG 58.745 52.174 0.00 0.00 0.00 3.02
1886 1962 4.262981 CCCTACTACTACGATGAGCCTAGT 60.263 50.000 0.00 0.00 0.00 2.57
1887 1963 5.046735 CCCTACTACTACGATGAGCCTAGTA 60.047 48.000 0.00 0.00 0.00 1.82
1888 1964 6.352051 CCCTACTACTACGATGAGCCTAGTAT 60.352 46.154 0.00 0.00 0.00 2.12
1889 1965 6.535865 CCTACTACTACGATGAGCCTAGTATG 59.464 46.154 0.00 0.00 0.00 2.39
1890 1966 5.867330 ACTACTACGATGAGCCTAGTATGT 58.133 41.667 0.00 0.00 0.00 2.29
1891 1967 7.002250 ACTACTACGATGAGCCTAGTATGTA 57.998 40.000 0.00 0.00 0.00 2.29
1892 1968 6.873076 ACTACTACGATGAGCCTAGTATGTAC 59.127 42.308 0.00 0.00 0.00 2.90
1896 1972 3.057456 CGATGAGCCTAGTATGTACCACC 60.057 52.174 0.00 0.00 0.00 4.61
1897 1973 2.304092 TGAGCCTAGTATGTACCACCG 58.696 52.381 0.00 0.00 0.00 4.94
1904 1980 4.518211 CCTAGTATGTACCACCGTTCTAGG 59.482 50.000 0.00 0.00 37.83 3.02
1908 1984 2.173519 TGTACCACCGTTCTAGGGAAG 58.826 52.381 0.00 0.00 35.02 3.46
1909 1985 2.174360 GTACCACCGTTCTAGGGAAGT 58.826 52.381 0.00 0.00 35.02 3.01
1910 1986 0.974383 ACCACCGTTCTAGGGAAGTG 59.026 55.000 0.00 0.00 35.02 3.16
1912 1988 1.621814 CCACCGTTCTAGGGAAGTGAA 59.378 52.381 5.73 0.00 32.68 3.18
1914 1990 3.326747 CACCGTTCTAGGGAAGTGAAAG 58.673 50.000 0.00 0.00 32.68 2.62
1915 1991 3.006537 CACCGTTCTAGGGAAGTGAAAGA 59.993 47.826 0.00 0.00 32.68 2.52
1916 1992 3.258622 ACCGTTCTAGGGAAGTGAAAGAG 59.741 47.826 0.00 0.00 35.02 2.85
1919 1995 2.834113 TCTAGGGAAGTGAAAGAGGGG 58.166 52.381 0.00 0.00 0.00 4.79
1924 2000 1.003233 AAGTGAAAGAGGGGAGCGC 60.003 57.895 0.00 0.00 0.00 5.92
1939 2015 4.142160 GGGGAGCGCTTTTTCTAATGAAAT 60.142 41.667 13.26 0.00 41.24 2.17
1985 2061 4.078537 CAAAGAGTGTCAGGAGAGAGAGA 58.921 47.826 0.00 0.00 0.00 3.10
1986 2062 3.634397 AGAGTGTCAGGAGAGAGAGAG 57.366 52.381 0.00 0.00 0.00 3.20
1987 2063 2.017049 GAGTGTCAGGAGAGAGAGAGC 58.983 57.143 0.00 0.00 0.00 4.09
1988 2064 0.732571 GTGTCAGGAGAGAGAGAGCG 59.267 60.000 0.00 0.00 0.00 5.03
1999 2075 1.209504 AGAGAGAGCGCTAGTGAGAGT 59.790 52.381 11.50 0.00 0.00 3.24
2001 2077 0.661020 GAGAGCGCTAGTGAGAGTCC 59.339 60.000 11.50 0.00 0.00 3.85
2007 2083 0.457851 GCTAGTGAGAGTCCGCATGT 59.542 55.000 0.00 0.00 0.00 3.21
2015 2091 0.102120 GAGTCCGCATGTGAGAGAGG 59.898 60.000 8.11 0.00 0.00 3.69
2025 2101 1.169577 GTGAGAGAGGAAGCGTGAGA 58.830 55.000 0.00 0.00 0.00 3.27
2026 2102 1.132262 GTGAGAGAGGAAGCGTGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
2027 2103 1.003696 TGAGAGAGGAAGCGTGAGAGA 59.996 52.381 0.00 0.00 0.00 3.10
2035 2111 5.240623 AGAGGAAGCGTGAGAGATACTATTG 59.759 44.000 0.00 0.00 0.00 1.90
2053 2134 0.035247 TGTGCATGCATGTCAGCCTA 60.035 50.000 25.64 9.83 0.00 3.93
2057 2138 1.744798 GCATGCATGTCAGCCTACAGA 60.745 52.381 26.79 0.00 31.70 3.41
2062 2143 2.796383 GCATGTCAGCCTACAGACTACG 60.796 54.545 0.00 0.00 33.68 3.51
2064 2145 2.082231 TGTCAGCCTACAGACTACGTC 58.918 52.381 0.00 0.00 33.68 4.34
2075 2156 2.353269 CAGACTACGTCTAGACCTGCAG 59.647 54.545 17.23 6.78 41.37 4.41
2076 2157 1.064357 GACTACGTCTAGACCTGCAGC 59.936 57.143 17.23 0.00 0.00 5.25
2077 2158 0.382515 CTACGTCTAGACCTGCAGCC 59.617 60.000 17.23 1.81 0.00 4.85
2078 2159 0.034380 TACGTCTAGACCTGCAGCCT 60.034 55.000 17.23 10.07 0.00 4.58
2079 2160 0.034380 ACGTCTAGACCTGCAGCCTA 60.034 55.000 17.23 10.70 0.00 3.93
2080 2161 0.382515 CGTCTAGACCTGCAGCCTAC 59.617 60.000 17.23 3.04 0.00 3.18
2081 2162 1.475403 GTCTAGACCTGCAGCCTACA 58.525 55.000 12.13 0.00 0.00 2.74
2082 2163 1.407258 GTCTAGACCTGCAGCCTACAG 59.593 57.143 12.13 3.28 34.82 2.74
2083 2164 0.103937 CTAGACCTGCAGCCTACAGC 59.896 60.000 8.66 0.00 44.25 4.40
2101 2182 0.677731 GCTAGGACCTGTTGCATGCA 60.678 55.000 18.46 18.46 0.00 3.96
2103 2184 1.945394 CTAGGACCTGTTGCATGCATC 59.055 52.381 23.37 21.28 0.00 3.91
2105 2186 1.430632 GACCTGTTGCATGCATCGG 59.569 57.895 23.37 24.20 0.00 4.18
2108 2189 1.307355 CCTGTTGCATGCATCGGTCA 61.307 55.000 27.69 17.95 0.00 4.02
2129 2210 6.183360 GGTCACCATCAAATTCACTGGATAAG 60.183 42.308 7.03 0.00 32.92 1.73
2133 2214 5.125900 CCATCAAATTCACTGGATAAGCACA 59.874 40.000 0.00 0.00 0.00 4.57
2147 2228 5.163581 GGATAAGCACACATCTTCTGCAAAT 60.164 40.000 0.00 0.00 33.06 2.32
2154 2235 2.490903 ACATCTTCTGCAAATGGTCTGC 59.509 45.455 0.00 0.00 40.35 4.26
2156 2237 2.156917 TCTTCTGCAAATGGTCTGCTG 58.843 47.619 0.00 0.00 40.59 4.41
2159 2240 0.109272 CTGCAAATGGTCTGCTGCTG 60.109 55.000 0.00 0.00 40.59 4.41
2165 2246 2.745492 GGTCTGCTGCTGGACTGC 60.745 66.667 19.41 6.58 43.16 4.40
2166 2247 2.745492 GTCTGCTGCTGGACTGCC 60.745 66.667 15.24 0.00 42.24 4.85
2169 2250 4.648626 TGCTGCTGGACTGCCCAC 62.649 66.667 0.00 0.00 40.82 4.61
2170 2251 4.341783 GCTGCTGGACTGCCCACT 62.342 66.667 0.00 0.00 40.82 4.00
2182 2263 1.503542 GCCCACTGCACGAATCTTG 59.496 57.895 0.00 0.00 40.77 3.02
2189 2270 1.153958 GCACGAATCTTGGCAAGCC 60.154 57.895 22.31 12.23 0.00 4.35
2197 2278 1.600636 CTTGGCAAGCCTGAACGGA 60.601 57.895 15.25 0.00 36.94 4.69
2204 2285 2.544685 CAAGCCTGAACGGACAGATAG 58.455 52.381 11.64 0.00 39.94 2.08
2338 2419 6.156519 GCAGTCTCCCGTTTGATAAAAATTT 58.843 36.000 0.00 0.00 0.00 1.82
2411 2654 6.811665 GTCTGTAATTAATTTGTTTGGGCCTC 59.188 38.462 5.91 0.00 0.00 4.70
2412 2655 6.723977 TCTGTAATTAATTTGTTTGGGCCTCT 59.276 34.615 5.91 0.00 0.00 3.69
2560 2859 5.733620 AATGTCATCTGCCATGTTTCTTT 57.266 34.783 0.00 0.00 0.00 2.52
2606 2905 5.082059 CACGTGATTTCTGCACTGTTAATC 58.918 41.667 10.90 0.00 34.18 1.75
2624 2927 7.153315 TGTTAATCGTCCATGTACTTGTGTTA 58.847 34.615 7.86 0.00 0.00 2.41
2625 2928 7.820386 TGTTAATCGTCCATGTACTTGTGTTAT 59.180 33.333 7.86 0.00 0.00 1.89
2659 2962 4.525874 TGTCTCTTCATCTTCTCAAGCTGA 59.474 41.667 0.00 0.00 32.27 4.26
2704 3007 3.474942 TGCGCTTGCAGGAATGATA 57.525 47.368 9.73 0.00 45.56 2.15
2715 3018 8.840321 GCTTGCAGGAATGATAAGTTAATTAGA 58.160 33.333 0.00 0.00 0.00 2.10
2787 3100 4.318332 TGAGTCACTGTTTCCTGCAATAG 58.682 43.478 0.00 0.00 0.00 1.73
2831 3147 5.118050 ACGATGTGTCATGTAACTGTTTACG 59.882 40.000 0.00 0.00 40.61 3.18
2849 3165 7.423199 TGTTTACGATTACTGCTATCTGGTAG 58.577 38.462 0.00 0.00 0.00 3.18
2908 3224 8.685838 TTGTACCTTTGCTTACAAGATAAGTT 57.314 30.769 0.00 0.00 37.04 2.66
2912 3228 8.685838 ACCTTTGCTTACAAGATAAGTTGTTA 57.314 30.769 0.00 0.00 41.06 2.41
2943 3259 3.902261 TTTGTGCTTGTGATGTAGCTG 57.098 42.857 0.00 0.00 38.22 4.24
2993 3309 1.971505 TATTCACGCCTGCCTCCCAG 61.972 60.000 0.00 0.00 41.41 4.45
3003 3319 4.120755 CCTCCCAGGGCCAAGAGC 62.121 72.222 6.18 0.00 42.60 4.09
3052 3371 3.199880 ACCAGGTGTGACTTTCTCTTG 57.800 47.619 0.00 0.00 0.00 3.02
3057 3376 4.818546 CAGGTGTGACTTTCTCTTGTGATT 59.181 41.667 0.00 0.00 0.00 2.57
3100 3419 3.882444 CCATATCTGGGGTAGCATCATG 58.118 50.000 0.00 0.00 39.04 3.07
3101 3420 3.276857 CATATCTGGGGTAGCATCATGC 58.723 50.000 0.00 0.00 45.46 4.06
3102 3421 0.403271 ATCTGGGGTAGCATCATGCC 59.597 55.000 5.84 0.00 46.52 4.40
3103 3422 0.987613 TCTGGGGTAGCATCATGCCA 60.988 55.000 5.84 0.00 46.52 4.92
3104 3423 0.111832 CTGGGGTAGCATCATGCCAT 59.888 55.000 5.84 0.00 46.52 4.40
3105 3424 0.111061 TGGGGTAGCATCATGCCATC 59.889 55.000 5.84 0.00 46.52 3.51
3121 3440 2.216046 CCATCATCCATGTGTTCTCCG 58.784 52.381 0.00 0.00 0.00 4.63
3122 3441 2.216046 CATCATCCATGTGTTCTCCGG 58.784 52.381 0.00 0.00 0.00 5.14
3128 3447 1.673033 CCATGTGTTCTCCGGAGTGAC 60.673 57.143 30.17 26.79 0.00 3.67
3146 3465 5.253330 AGTGACGATAACCCAACATGATTT 58.747 37.500 0.00 0.00 0.00 2.17
3147 3466 6.411376 AGTGACGATAACCCAACATGATTTA 58.589 36.000 0.00 0.00 0.00 1.40
3148 3467 7.054124 AGTGACGATAACCCAACATGATTTAT 58.946 34.615 0.00 0.00 0.00 1.40
3167 3498 7.395772 TGATTTATGTTTGCCAAGATAGTCCAA 59.604 33.333 0.00 0.00 0.00 3.53
3168 3499 7.716799 TTTATGTTTGCCAAGATAGTCCAAT 57.283 32.000 0.00 0.00 0.00 3.16
3178 3509 6.295575 GCCAAGATAGTCCAATATGAGCTAGT 60.296 42.308 0.00 0.00 0.00 2.57
3219 3550 4.386867 TGGGCTTCTCAAATCTACTACG 57.613 45.455 0.00 0.00 0.00 3.51
3220 3551 3.767673 TGGGCTTCTCAAATCTACTACGT 59.232 43.478 0.00 0.00 0.00 3.57
3221 3552 4.951715 TGGGCTTCTCAAATCTACTACGTA 59.048 41.667 0.00 0.00 0.00 3.57
3233 3671 7.998753 AATCTACTACGTACTGGTTTTATGC 57.001 36.000 0.00 0.00 0.00 3.14
3237 3675 8.347771 TCTACTACGTACTGGTTTTATGCTATG 58.652 37.037 0.00 0.00 0.00 2.23
3246 3684 5.904941 TGGTTTTATGCTATGCCTGATTTG 58.095 37.500 0.00 0.00 0.00 2.32
3249 3687 6.040391 GGTTTTATGCTATGCCTGATTTGGTA 59.960 38.462 0.00 0.00 0.00 3.25
3250 3688 6.882610 TTTATGCTATGCCTGATTTGGTAG 57.117 37.500 0.00 0.00 0.00 3.18
3251 3689 4.712051 ATGCTATGCCTGATTTGGTAGA 57.288 40.909 0.00 0.00 0.00 2.59
3256 3694 3.627395 TGCCTGATTTGGTAGATCGTT 57.373 42.857 0.00 0.00 0.00 3.85
3257 3695 4.746535 TGCCTGATTTGGTAGATCGTTA 57.253 40.909 0.00 0.00 0.00 3.18
3266 3705 4.859304 TGGTAGATCGTTAGTGTGTGTT 57.141 40.909 0.00 0.00 0.00 3.32
3273 3712 4.635833 TCGTTAGTGTGTGTTGTACTGA 57.364 40.909 0.00 0.00 0.00 3.41
3275 3714 6.316440 TCGTTAGTGTGTGTTGTACTGATA 57.684 37.500 0.00 0.00 0.00 2.15
3278 3717 6.453791 CGTTAGTGTGTGTTGTACTGATATGC 60.454 42.308 0.00 0.00 0.00 3.14
3279 3718 4.893608 AGTGTGTGTTGTACTGATATGCA 58.106 39.130 0.00 0.00 0.00 3.96
3280 3719 5.491070 AGTGTGTGTTGTACTGATATGCAT 58.509 37.500 3.79 3.79 0.00 3.96
3285 3724 9.777297 TGTGTGTTGTACTGATATGCATTATAT 57.223 29.630 3.54 0.00 34.65 0.86
3316 3755 6.375174 CACATGTTCACTTGGGAGATATTTCA 59.625 38.462 0.00 0.00 0.00 2.69
3317 3756 7.067859 CACATGTTCACTTGGGAGATATTTCAT 59.932 37.037 0.00 0.00 0.00 2.57
3318 3757 8.274322 ACATGTTCACTTGGGAGATATTTCATA 58.726 33.333 0.00 0.00 0.00 2.15
3322 3761 9.220767 GTTCACTTGGGAGATATTTCATATACC 57.779 37.037 0.00 0.00 0.00 2.73
3323 3762 7.611770 TCACTTGGGAGATATTTCATATACCG 58.388 38.462 0.00 0.00 0.00 4.02
3324 3763 7.453439 TCACTTGGGAGATATTTCATATACCGA 59.547 37.037 0.00 0.00 0.00 4.69
3325 3764 7.545965 CACTTGGGAGATATTTCATATACCGAC 59.454 40.741 0.00 0.00 0.00 4.79
3326 3765 7.234782 ACTTGGGAGATATTTCATATACCGACA 59.765 37.037 0.00 0.00 0.00 4.35
3327 3766 7.170393 TGGGAGATATTTCATATACCGACAG 57.830 40.000 0.00 0.00 0.00 3.51
3328 3767 6.043411 GGGAGATATTTCATATACCGACAGC 58.957 44.000 0.00 0.00 0.00 4.40
3329 3768 6.127310 GGGAGATATTTCATATACCGACAGCT 60.127 42.308 0.00 0.00 0.00 4.24
3333 3772 8.367911 AGATATTTCATATACCGACAGCTGAAA 58.632 33.333 23.35 6.81 37.12 2.69
3334 3773 6.851222 ATTTCATATACCGACAGCTGAAAG 57.149 37.500 23.35 10.36 36.42 2.62
3335 3774 5.592104 TTCATATACCGACAGCTGAAAGA 57.408 39.130 23.35 1.35 34.07 2.52
3336 3775 5.592104 TCATATACCGACAGCTGAAAGAA 57.408 39.130 23.35 2.81 34.07 2.52
3337 3776 5.972935 TCATATACCGACAGCTGAAAGAAA 58.027 37.500 23.35 1.05 34.07 2.52
3338 3777 6.582636 TCATATACCGACAGCTGAAAGAAAT 58.417 36.000 23.35 8.87 34.07 2.17
3339 3778 7.722363 TCATATACCGACAGCTGAAAGAAATA 58.278 34.615 23.35 10.74 34.07 1.40
3340 3779 8.367911 TCATATACCGACAGCTGAAAGAAATAT 58.632 33.333 23.35 12.43 34.07 1.28
3341 3780 9.639601 CATATACCGACAGCTGAAAGAAATATA 57.360 33.333 23.35 12.20 34.07 0.86
3342 3781 7.948278 ATACCGACAGCTGAAAGAAATATAC 57.052 36.000 23.35 0.00 34.07 1.47
3343 3782 5.978814 ACCGACAGCTGAAAGAAATATACT 58.021 37.500 23.35 0.00 34.07 2.12
3344 3783 7.108841 ACCGACAGCTGAAAGAAATATACTA 57.891 36.000 23.35 0.00 34.07 1.82
3345 3784 6.979238 ACCGACAGCTGAAAGAAATATACTAC 59.021 38.462 23.35 0.00 34.07 2.73
3346 3785 7.147880 ACCGACAGCTGAAAGAAATATACTACT 60.148 37.037 23.35 0.00 34.07 2.57
3347 3786 8.350722 CCGACAGCTGAAAGAAATATACTACTA 58.649 37.037 23.35 0.00 34.07 1.82
3348 3787 9.900710 CGACAGCTGAAAGAAATATACTACTAT 57.099 33.333 23.35 0.00 34.07 2.12
3370 3809 8.832521 ACTATTAAGTTTTGTTCACATGTTCGA 58.167 29.630 0.00 0.00 29.00 3.71
3371 3810 9.658475 CTATTAAGTTTTGTTCACATGTTCGAA 57.342 29.630 0.00 0.00 0.00 3.71
3373 3812 6.810888 AAGTTTTGTTCACATGTTCGAATG 57.189 33.333 0.00 0.00 0.00 2.67
3374 3813 5.890334 AGTTTTGTTCACATGTTCGAATGT 58.110 33.333 0.00 0.00 41.50 2.71
3375 3814 6.329496 AGTTTTGTTCACATGTTCGAATGTT 58.671 32.000 0.00 0.00 38.75 2.71
3376 3815 6.253298 AGTTTTGTTCACATGTTCGAATGTTG 59.747 34.615 0.00 2.24 38.75 3.33
3377 3816 4.891627 TGTTCACATGTTCGAATGTTGT 57.108 36.364 0.00 2.91 38.75 3.32
3378 3817 5.993106 TGTTCACATGTTCGAATGTTGTA 57.007 34.783 0.00 0.00 38.75 2.41
3379 3818 5.984627 TGTTCACATGTTCGAATGTTGTAG 58.015 37.500 0.00 2.14 38.75 2.74
3380 3819 5.525745 TGTTCACATGTTCGAATGTTGTAGT 59.474 36.000 0.00 0.00 38.75 2.73
3384 3823 9.594478 TTCACATGTTCGAATGTTGTAGTATAT 57.406 29.630 0.00 0.00 38.75 0.86
3407 3846 5.665459 TGTTAAGTTTTGTTCCCACATTGG 58.335 37.500 0.00 0.00 37.25 3.16
3412 3851 4.469586 AGTTTTGTTCCCACATTGGTCTTT 59.530 37.500 0.00 0.00 35.17 2.52
3414 3853 6.155393 AGTTTTGTTCCCACATTGGTCTTTTA 59.845 34.615 0.00 0.00 35.17 1.52
3435 3903 4.415881 ACCATACCGTTGATCTAATGCA 57.584 40.909 0.00 0.00 0.00 3.96
3451 3919 1.927487 TGCATTGCTTCTCCAACCAT 58.073 45.000 10.49 0.00 0.00 3.55
3454 3922 3.071312 TGCATTGCTTCTCCAACCATTTT 59.929 39.130 10.49 0.00 0.00 1.82
3522 3990 4.577693 CCATGAATGATCAGTTGAATCGGT 59.422 41.667 0.09 0.00 39.39 4.69
3528 3996 5.400066 TGATCAGTTGAATCGGTTGACTA 57.600 39.130 0.00 0.00 0.00 2.59
3628 4112 2.742372 GTTCCGGTGCATGCTCGT 60.742 61.111 20.33 0.00 0.00 4.18
3656 4140 7.935755 ACATGATTGTAATATGACAGCTTAGCT 59.064 33.333 0.00 0.00 34.62 3.32
3664 4148 2.154462 TGACAGCTTAGCTCTTTTGGC 58.846 47.619 2.68 0.00 36.40 4.52
3674 4158 0.695347 CTCTTTTGGCTGGAGGGAGT 59.305 55.000 0.00 0.00 0.00 3.85
3675 4159 0.401738 TCTTTTGGCTGGAGGGAGTG 59.598 55.000 0.00 0.00 0.00 3.51
3676 4160 1.228552 TTTTGGCTGGAGGGAGTGC 60.229 57.895 0.00 0.00 0.00 4.40
3684 4168 2.298729 GCTGGAGGGAGTGCTTATCTAG 59.701 54.545 0.00 0.00 0.00 2.43
3715 4199 2.851824 GTGCTGTTCTTGTTGTTTTCGG 59.148 45.455 0.00 0.00 0.00 4.30
3735 4219 2.681848 GGTCTTGAATCACCTGCTGATG 59.318 50.000 0.00 0.00 38.82 3.07
3742 4226 1.059098 TCACCTGCTGATGTTGGTCT 58.941 50.000 0.00 0.00 0.00 3.85
3848 4464 7.398047 TGTTCTAGCCTGGTTAGTTACTCATTA 59.602 37.037 15.94 0.10 0.00 1.90
3893 4511 4.100529 CAAATGAATTTCTGCAGCGTAGG 58.899 43.478 9.47 0.00 0.00 3.18
3897 4515 3.267483 GAATTTCTGCAGCGTAGGGTTA 58.733 45.455 9.47 0.00 0.00 2.85
3902 4520 1.814169 GCAGCGTAGGGTTACAGCC 60.814 63.158 0.00 0.00 33.06 4.85
3965 4584 4.563184 GGTTATCAGTCAAGTTCGTGCTAG 59.437 45.833 0.00 0.00 0.00 3.42
3969 4588 2.802816 CAGTCAAGTTCGTGCTAGCTTT 59.197 45.455 17.23 0.00 0.00 3.51
3975 4594 4.385244 AGTTCGTGCTAGCTTTAAAACG 57.615 40.909 17.23 15.82 0.00 3.60
3994 4613 9.539825 TTAAAACGGTGTAGTTGTACATCTTTA 57.460 29.630 11.57 0.24 41.29 1.85
4034 4653 9.914834 TGCAAATTAATATGGTAGGTTTACTCT 57.085 29.630 0.00 0.00 0.00 3.24
4039 4658 9.847224 ATTAATATGGTAGGTTTACTCTTGTGG 57.153 33.333 0.00 0.00 0.00 4.17
4040 4659 3.412237 TGGTAGGTTTACTCTTGTGGC 57.588 47.619 0.00 0.00 0.00 5.01
4041 4660 2.976882 TGGTAGGTTTACTCTTGTGGCT 59.023 45.455 0.00 0.00 0.00 4.75
4042 4661 3.244422 TGGTAGGTTTACTCTTGTGGCTG 60.244 47.826 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 182 1.873591 GCTATAAATGCCGGTGTCCTG 59.126 52.381 1.90 0.00 0.00 3.86
182 183 1.768870 AGCTATAAATGCCGGTGTCCT 59.231 47.619 1.90 0.00 0.00 3.85
183 184 1.873591 CAGCTATAAATGCCGGTGTCC 59.126 52.381 1.90 0.00 0.00 4.02
191 192 2.291741 GACCACTGCCAGCTATAAATGC 59.708 50.000 0.00 0.00 0.00 3.56
192 193 2.545526 CGACCACTGCCAGCTATAAATG 59.454 50.000 0.00 0.00 0.00 2.32
193 194 2.485479 CCGACCACTGCCAGCTATAAAT 60.485 50.000 0.00 0.00 0.00 1.40
307 308 3.713826 TTTTCCCGAAACATAGCCTCT 57.286 42.857 0.00 0.00 0.00 3.69
359 363 6.295249 GGATTAGGCTTCTTCTAGCAAATCT 58.705 40.000 15.94 2.06 43.02 2.40
363 367 4.040755 AGGGATTAGGCTTCTTCTAGCAA 58.959 43.478 0.00 0.00 43.02 3.91
399 403 1.559368 CACATCCCAATTTGAGGGCA 58.441 50.000 0.00 0.00 46.36 5.36
553 567 1.946768 CGGAGAGGCTTCTAGAGACAG 59.053 57.143 0.00 0.00 35.01 3.51
586 600 4.008074 ACGTCATGTCTCTTTGACCAAT 57.992 40.909 0.00 0.00 44.75 3.16
601 620 3.532896 CCAACTGGCAGTACGTCAT 57.467 52.632 22.37 0.03 0.00 3.06
621 640 1.073763 AGCCCATACAACTGTTCTGCA 59.926 47.619 0.00 0.00 0.00 4.41
678 697 1.654954 AATCGCTCGCCGTCTAGTGT 61.655 55.000 0.00 0.00 38.35 3.55
679 698 0.306840 TAATCGCTCGCCGTCTAGTG 59.693 55.000 0.00 0.00 38.35 2.74
680 699 0.307146 GTAATCGCTCGCCGTCTAGT 59.693 55.000 0.00 0.00 38.35 2.57
681 700 0.385723 GGTAATCGCTCGCCGTCTAG 60.386 60.000 0.00 0.00 38.35 2.43
682 701 1.650912 GGTAATCGCTCGCCGTCTA 59.349 57.895 0.00 0.00 38.35 2.59
719 743 5.862860 GTGTGAGACCTTTACTAGTGCTAAC 59.137 44.000 5.39 0.00 0.00 2.34
1083 1143 2.989571 ACCTTCCTTGTCCTGGATCTTT 59.010 45.455 0.00 0.00 33.09 2.52
1201 1262 2.188524 CGATCGATTCAGACCACACAG 58.811 52.381 10.26 0.00 0.00 3.66
1202 1263 1.735700 GCGATCGATTCAGACCACACA 60.736 52.381 21.57 0.00 0.00 3.72
1210 1271 0.788995 GATGCCTGCGATCGATTCAG 59.211 55.000 21.57 16.18 0.00 3.02
1257 1318 4.021925 GTCCAGCTGCTTCCCCGT 62.022 66.667 8.66 0.00 0.00 5.28
1440 1501 6.684555 GCTAGCTAATTTGTTCGAGAAACATG 59.315 38.462 7.70 0.00 46.94 3.21
1441 1502 6.595716 AGCTAGCTAATTTGTTCGAGAAACAT 59.404 34.615 17.69 0.00 46.94 2.71
1481 1543 0.530744 GACTGTCGCACATCCAGGTA 59.469 55.000 0.00 0.00 0.00 3.08
1522 1584 1.357761 ACCCGGGTTCTGAAAATCCAT 59.642 47.619 24.16 0.00 0.00 3.41
1555 1617 1.002430 GCATGGGCGATCAGGATAAGA 59.998 52.381 0.00 0.00 0.00 2.10
1556 1618 1.271001 TGCATGGGCGATCAGGATAAG 60.271 52.381 0.00 0.00 45.35 1.73
1569 1631 3.256383 TGATGAGTCAAAACTTGCATGGG 59.744 43.478 0.00 0.00 35.28 4.00
1577 1639 5.180868 GCACAGATCTTGATGAGTCAAAACT 59.819 40.000 0.00 0.00 43.39 2.66
1578 1640 5.388944 GCACAGATCTTGATGAGTCAAAAC 58.611 41.667 0.00 0.00 43.39 2.43
1581 1643 3.008266 TGGCACAGATCTTGATGAGTCAA 59.992 43.478 0.00 0.00 41.89 3.18
1582 1644 2.568509 TGGCACAGATCTTGATGAGTCA 59.431 45.455 0.00 0.00 0.00 3.41
1588 1650 3.996921 AGACTTGGCACAGATCTTGAT 57.003 42.857 0.00 0.00 42.39 2.57
1630 1692 2.492484 CGTCTTACTGTTCACTAGCCCT 59.508 50.000 0.00 0.00 0.00 5.19
1643 1705 6.013984 TCAATTTTTCTACTCCCCGTCTTACT 60.014 38.462 0.00 0.00 0.00 2.24
1651 1713 6.206048 TCTCGTTTTCAATTTTTCTACTCCCC 59.794 38.462 0.00 0.00 0.00 4.81
1659 1721 4.388773 GGCCCATCTCGTTTTCAATTTTTC 59.611 41.667 0.00 0.00 0.00 2.29
1664 1726 2.514458 AGGCCCATCTCGTTTTCAAT 57.486 45.000 0.00 0.00 0.00 2.57
1670 1732 0.036306 AACGAAAGGCCCATCTCGTT 59.964 50.000 19.98 19.98 46.51 3.85
1676 1738 0.323087 GTACCCAACGAAAGGCCCAT 60.323 55.000 0.00 0.00 0.00 4.00
1684 1746 2.036217 ACGATGAACAGTACCCAACGAA 59.964 45.455 10.19 0.00 31.91 3.85
1697 1759 1.583054 GGGATGTGCCTACGATGAAC 58.417 55.000 0.00 0.00 36.66 3.18
1704 1766 3.120086 ATGCGGGGGATGTGCCTAC 62.120 63.158 0.00 0.00 36.66 3.18
1707 1769 4.195334 AGATGCGGGGGATGTGCC 62.195 66.667 0.00 0.00 0.00 5.01
1708 1770 2.903855 CAGATGCGGGGGATGTGC 60.904 66.667 0.00 0.00 0.00 4.57
1709 1771 1.524621 GACAGATGCGGGGGATGTG 60.525 63.158 0.00 0.00 31.51 3.21
1710 1772 1.976132 CTGACAGATGCGGGGGATGT 61.976 60.000 0.00 0.00 0.00 3.06
1713 1775 3.785859 GCTGACAGATGCGGGGGA 61.786 66.667 6.65 0.00 0.00 4.81
1722 1786 2.350057 ATAGAGGTAGCGCTGACAGA 57.650 50.000 22.90 0.00 0.00 3.41
1739 1803 5.222130 GGGCCCCAATATCTTTCTCTCAATA 60.222 44.000 12.23 0.00 0.00 1.90
1753 1817 0.562177 ATGCATGAAGGGCCCCAATA 59.438 50.000 21.43 2.50 0.00 1.90
1760 1824 1.076485 ACTGGGATGCATGAAGGGC 60.076 57.895 2.46 0.00 0.00 5.19
1794 1858 2.093711 TGTGTATATGAAGCGGCTGTGT 60.094 45.455 1.81 0.00 0.00 3.72
1795 1859 2.549926 TGTGTATATGAAGCGGCTGTG 58.450 47.619 1.81 0.00 0.00 3.66
1796 1860 2.936498 GTTGTGTATATGAAGCGGCTGT 59.064 45.455 1.81 0.00 0.00 4.40
1797 1861 2.287915 GGTTGTGTATATGAAGCGGCTG 59.712 50.000 1.81 0.00 0.00 4.85
1800 1864 6.483687 GTTTTAGGTTGTGTATATGAAGCGG 58.516 40.000 0.00 0.00 0.00 5.52
1809 1873 5.989551 ACGAAACGTTTTAGGTTGTGTAT 57.010 34.783 15.89 0.00 36.35 2.29
1847 1918 2.917713 AGGGCTCTCTCTCTCTTCAA 57.082 50.000 0.00 0.00 0.00 2.69
1849 1920 3.577805 AGTAGGGCTCTCTCTCTCTTC 57.422 52.381 0.00 0.00 0.00 2.87
1850 1921 4.045022 AGTAGTAGGGCTCTCTCTCTCTT 58.955 47.826 0.00 0.00 0.00 2.85
1867 1943 5.867330 ACATACTAGGCTCATCGTAGTAGT 58.133 41.667 0.00 0.00 45.93 2.73
1871 1947 5.001874 TGGTACATACTAGGCTCATCGTAG 58.998 45.833 0.00 0.00 38.69 3.51
1872 1948 4.758674 GTGGTACATACTAGGCTCATCGTA 59.241 45.833 0.00 0.00 44.52 3.43
1873 1949 3.568853 GTGGTACATACTAGGCTCATCGT 59.431 47.826 0.00 0.00 44.52 3.73
1874 1950 3.057456 GGTGGTACATACTAGGCTCATCG 60.057 52.174 0.00 0.00 44.52 3.84
1875 1951 3.057456 CGGTGGTACATACTAGGCTCATC 60.057 52.174 0.00 0.00 44.52 2.92
1876 1952 2.891580 CGGTGGTACATACTAGGCTCAT 59.108 50.000 0.00 0.00 44.52 2.90
1877 1953 2.304092 CGGTGGTACATACTAGGCTCA 58.696 52.381 0.00 0.00 44.52 4.26
1878 1954 2.305009 ACGGTGGTACATACTAGGCTC 58.695 52.381 0.00 0.00 44.52 4.70
1879 1955 2.449137 ACGGTGGTACATACTAGGCT 57.551 50.000 0.00 0.00 44.52 4.58
1880 1956 2.692041 AGAACGGTGGTACATACTAGGC 59.308 50.000 0.00 0.00 44.52 3.93
1881 1957 4.518211 CCTAGAACGGTGGTACATACTAGG 59.482 50.000 0.00 0.00 44.52 3.02
1882 1958 4.518211 CCCTAGAACGGTGGTACATACTAG 59.482 50.000 0.00 0.00 44.52 2.57
1883 1959 4.165950 TCCCTAGAACGGTGGTACATACTA 59.834 45.833 0.00 0.00 44.52 1.82
1884 1960 3.053395 TCCCTAGAACGGTGGTACATACT 60.053 47.826 0.00 0.00 44.52 2.12
1885 1961 3.290710 TCCCTAGAACGGTGGTACATAC 58.709 50.000 0.00 0.00 44.52 2.39
1886 1962 3.668141 TCCCTAGAACGGTGGTACATA 57.332 47.619 0.00 0.00 44.52 2.29
1887 1963 2.537633 TCCCTAGAACGGTGGTACAT 57.462 50.000 0.00 0.00 44.52 2.29
1888 1964 2.173519 CTTCCCTAGAACGGTGGTACA 58.826 52.381 0.00 0.00 0.00 2.90
1889 1965 2.094338 CACTTCCCTAGAACGGTGGTAC 60.094 54.545 0.00 0.00 29.05 3.34
1890 1966 2.173519 CACTTCCCTAGAACGGTGGTA 58.826 52.381 0.00 0.00 29.05 3.25
1891 1967 0.974383 CACTTCCCTAGAACGGTGGT 59.026 55.000 0.00 0.00 29.05 4.16
1892 1968 1.263356 TCACTTCCCTAGAACGGTGG 58.737 55.000 0.00 0.00 32.01 4.61
1896 1972 3.368531 CCCTCTTTCACTTCCCTAGAACG 60.369 52.174 0.00 0.00 0.00 3.95
1897 1973 3.055021 CCCCTCTTTCACTTCCCTAGAAC 60.055 52.174 0.00 0.00 0.00 3.01
1904 1980 0.391793 CGCTCCCCTCTTTCACTTCC 60.392 60.000 0.00 0.00 0.00 3.46
1908 1984 0.606673 AAAGCGCTCCCCTCTTTCAC 60.607 55.000 12.06 0.00 0.00 3.18
1909 1985 0.110486 AAAAGCGCTCCCCTCTTTCA 59.890 50.000 12.06 0.00 30.52 2.69
1910 1986 1.200252 GAAAAAGCGCTCCCCTCTTTC 59.800 52.381 12.06 9.50 30.52 2.62
1912 1988 0.402121 AGAAAAAGCGCTCCCCTCTT 59.598 50.000 12.06 0.00 0.00 2.85
1914 1990 2.109425 TTAGAAAAAGCGCTCCCCTC 57.891 50.000 12.06 5.45 0.00 4.30
1915 1991 2.026262 TCATTAGAAAAAGCGCTCCCCT 60.026 45.455 12.06 8.60 0.00 4.79
1916 1992 2.365582 TCATTAGAAAAAGCGCTCCCC 58.634 47.619 12.06 0.00 0.00 4.81
1919 1995 6.546395 TCTCATTTCATTAGAAAAAGCGCTC 58.454 36.000 12.06 0.00 46.06 5.03
1939 2015 2.945008 CCACTTGCACAAACTTCTCTCA 59.055 45.455 0.00 0.00 0.00 3.27
1953 2029 1.680338 ACACTCTTTGTCCCACTTGC 58.320 50.000 0.00 0.00 29.79 4.01
1977 2053 1.484653 TCTCACTAGCGCTCTCTCTCT 59.515 52.381 16.34 0.00 0.00 3.10
1978 2054 1.867233 CTCTCACTAGCGCTCTCTCTC 59.133 57.143 16.34 0.00 0.00 3.20
1985 2061 2.766400 GCGGACTCTCACTAGCGCT 61.766 63.158 17.26 17.26 30.69 5.92
1986 2062 2.278271 GCGGACTCTCACTAGCGC 60.278 66.667 0.00 0.00 0.00 5.92
1987 2063 0.593518 CATGCGGACTCTCACTAGCG 60.594 60.000 0.00 0.00 0.00 4.26
1988 2064 0.457851 ACATGCGGACTCTCACTAGC 59.542 55.000 0.00 0.00 0.00 3.42
1999 2075 0.820226 CTTCCTCTCTCACATGCGGA 59.180 55.000 0.00 0.00 0.00 5.54
2001 2077 1.144565 CGCTTCCTCTCTCACATGCG 61.145 60.000 0.00 0.00 36.41 4.73
2007 2083 1.003696 TCTCTCACGCTTCCTCTCTCA 59.996 52.381 0.00 0.00 0.00 3.27
2015 2091 4.442733 GCACAATAGTATCTCTCACGCTTC 59.557 45.833 0.00 0.00 0.00 3.86
2025 2101 5.370679 TGACATGCATGCACAATAGTATCT 58.629 37.500 25.37 0.00 0.00 1.98
2026 2102 5.678132 TGACATGCATGCACAATAGTATC 57.322 39.130 25.37 12.44 0.00 2.24
2027 2103 4.023450 GCTGACATGCATGCACAATAGTAT 60.023 41.667 25.37 0.38 0.00 2.12
2035 2111 0.379669 GTAGGCTGACATGCATGCAC 59.620 55.000 25.37 19.87 34.04 4.57
2062 2143 1.407258 CTGTAGGCTGCAGGTCTAGAC 59.593 57.143 23.09 14.87 32.21 2.59
2064 2145 0.103937 GCTGTAGGCTGCAGGTCTAG 59.896 60.000 29.72 8.62 39.07 2.43
2081 2162 0.393537 GCATGCAACAGGTCCTAGCT 60.394 55.000 14.21 0.00 0.00 3.32
2082 2163 0.677731 TGCATGCAACAGGTCCTAGC 60.678 55.000 20.30 0.00 0.00 3.42
2083 2164 1.945394 GATGCATGCAACAGGTCCTAG 59.055 52.381 26.68 0.00 0.00 3.02
2084 2165 1.743431 CGATGCATGCAACAGGTCCTA 60.743 52.381 26.68 0.00 0.00 2.94
2085 2166 1.028330 CGATGCATGCAACAGGTCCT 61.028 55.000 26.68 4.93 0.00 3.85
2086 2167 1.430632 CGATGCATGCAACAGGTCC 59.569 57.895 26.68 7.03 0.00 4.46
2087 2168 1.308069 ACCGATGCATGCAACAGGTC 61.308 55.000 28.29 19.50 0.00 3.85
2088 2169 1.303561 ACCGATGCATGCAACAGGT 60.304 52.632 28.29 28.29 0.00 4.00
2089 2170 1.307355 TGACCGATGCATGCAACAGG 61.307 55.000 26.68 27.05 0.00 4.00
2090 2171 0.179181 GTGACCGATGCATGCAACAG 60.179 55.000 26.68 17.25 0.00 3.16
2091 2172 1.585267 GGTGACCGATGCATGCAACA 61.585 55.000 26.68 16.11 0.00 3.33
2092 2173 1.137404 GGTGACCGATGCATGCAAC 59.863 57.895 26.68 21.63 0.00 4.17
2101 2182 3.691118 CAGTGAATTTGATGGTGACCGAT 59.309 43.478 0.00 0.00 0.00 4.18
2103 2184 2.162208 CCAGTGAATTTGATGGTGACCG 59.838 50.000 0.00 0.00 0.00 4.79
2105 2186 6.678900 GCTTATCCAGTGAATTTGATGGTGAC 60.679 42.308 0.00 0.00 34.32 3.67
2108 2189 5.126061 GTGCTTATCCAGTGAATTTGATGGT 59.874 40.000 0.00 0.00 34.32 3.55
2129 2210 2.029649 ACCATTTGCAGAAGATGTGTGC 60.030 45.455 0.00 0.00 46.67 4.57
2133 2214 2.490903 GCAGACCATTTGCAGAAGATGT 59.509 45.455 0.00 0.00 41.17 3.06
2147 2228 2.745698 CAGTCCAGCAGCAGACCA 59.254 61.111 11.05 0.00 33.29 4.02
2165 2246 1.926511 GCCAAGATTCGTGCAGTGGG 61.927 60.000 0.00 0.00 0.00 4.61
2166 2247 1.236616 TGCCAAGATTCGTGCAGTGG 61.237 55.000 0.00 0.00 0.00 4.00
2169 2250 0.455633 GCTTGCCAAGATTCGTGCAG 60.456 55.000 9.04 0.00 34.81 4.41
2170 2251 1.580942 GCTTGCCAAGATTCGTGCA 59.419 52.632 9.04 0.00 0.00 4.57
2182 2263 2.281484 TGTCCGTTCAGGCTTGCC 60.281 61.111 2.97 2.97 40.77 4.52
2189 2270 1.202463 CCCTGCTATCTGTCCGTTCAG 60.202 57.143 0.00 0.00 36.85 3.02
2197 2278 1.762460 CCGACCCCCTGCTATCTGT 60.762 63.158 0.00 0.00 0.00 3.41
2539 2838 4.525487 ACAAAGAAACATGGCAGATGACAT 59.475 37.500 0.00 0.00 46.65 3.06
2560 2859 1.774254 ACCAGTGGGAACTGATGAACA 59.226 47.619 15.21 0.00 39.99 3.18
2606 2905 7.652105 AGCTAATATAACACAAGTACATGGACG 59.348 37.037 1.41 0.00 0.00 4.79
2624 2927 9.323985 GAAGATGAAGAGACAACAAGCTAATAT 57.676 33.333 0.00 0.00 0.00 1.28
2625 2928 8.535335 AGAAGATGAAGAGACAACAAGCTAATA 58.465 33.333 0.00 0.00 0.00 0.98
2659 2962 5.786311 CAATCAACCATCAAACCACTCAAT 58.214 37.500 0.00 0.00 0.00 2.57
2704 3007 8.092687 ACGTATTGTGACTGGTCTAATTAACTT 58.907 33.333 2.38 0.00 0.00 2.66
2787 3100 3.632189 GTTCACAAAGAATCAGCACACC 58.368 45.455 0.00 0.00 38.76 4.16
2849 3165 4.730035 GCATGATCAACTAAGCACTTCAGC 60.730 45.833 0.00 0.00 0.00 4.26
2882 3198 8.863872 ACTTATCTTGTAAGCAAAGGTACAAT 57.136 30.769 0.00 0.00 33.73 2.71
2884 3200 7.717875 ACAACTTATCTTGTAAGCAAAGGTACA 59.282 33.333 0.00 0.00 32.38 2.90
2885 3201 8.095937 ACAACTTATCTTGTAAGCAAAGGTAC 57.904 34.615 9.21 0.00 32.38 3.34
2908 3224 7.651304 CACAAGCACAAATATTTCCTGTTAACA 59.349 33.333 8.28 8.28 0.00 2.41
2912 3228 6.403866 TCACAAGCACAAATATTTCCTGTT 57.596 33.333 0.00 0.00 0.00 3.16
2943 3259 7.139896 ACAAAACAAAATGGTGAAAAAGGTC 57.860 32.000 0.00 0.00 0.00 3.85
3003 3319 0.236711 CACACTTCTTCTTGCGGCAG 59.763 55.000 1.67 0.00 0.00 4.85
3078 3397 6.980716 GCATGATGCTACCCCAGATATGGG 62.981 54.167 19.20 19.20 43.96 4.00
3087 3406 0.111061 TGATGGCATGATGCTACCCC 59.889 55.000 17.84 5.16 44.28 4.95
3098 3417 3.220110 GAGAACACATGGATGATGGCAT 58.780 45.455 0.00 0.00 36.23 4.40
3099 3418 2.646930 GAGAACACATGGATGATGGCA 58.353 47.619 0.00 0.00 36.23 4.92
3100 3419 1.952296 GGAGAACACATGGATGATGGC 59.048 52.381 0.00 0.00 36.23 4.40
3101 3420 2.216046 CGGAGAACACATGGATGATGG 58.784 52.381 0.00 0.00 36.23 3.51
3102 3421 2.158914 TCCGGAGAACACATGGATGATG 60.159 50.000 0.00 0.00 38.15 3.07
3103 3422 2.103771 CTCCGGAGAACACATGGATGAT 59.896 50.000 28.21 0.00 0.00 2.45
3104 3423 1.482182 CTCCGGAGAACACATGGATGA 59.518 52.381 28.21 0.00 0.00 2.92
3105 3424 1.208052 ACTCCGGAGAACACATGGATG 59.792 52.381 37.69 7.77 0.00 3.51
3121 3440 2.754946 TGTTGGGTTATCGTCACTCC 57.245 50.000 0.00 0.00 0.00 3.85
3122 3441 3.857052 TCATGTTGGGTTATCGTCACTC 58.143 45.455 0.00 0.00 0.00 3.51
3146 3465 8.217111 TCATATTGGACTATCTTGGCAAACATA 58.783 33.333 0.00 0.00 0.00 2.29
3147 3466 7.062322 TCATATTGGACTATCTTGGCAAACAT 58.938 34.615 0.00 0.00 0.00 2.71
3148 3467 6.422333 TCATATTGGACTATCTTGGCAAACA 58.578 36.000 0.00 0.00 0.00 2.83
3150 3481 5.532406 GCTCATATTGGACTATCTTGGCAAA 59.468 40.000 0.00 0.00 0.00 3.68
3152 3483 4.349048 AGCTCATATTGGACTATCTTGGCA 59.651 41.667 0.00 0.00 0.00 4.92
3186 3517 9.240734 GATTTGAGAAGCCCATAAGATGATAAT 57.759 33.333 0.00 0.00 0.00 1.28
3190 3521 6.257994 AGATTTGAGAAGCCCATAAGATGA 57.742 37.500 0.00 0.00 0.00 2.92
3191 3522 7.222872 AGTAGATTTGAGAAGCCCATAAGATG 58.777 38.462 0.00 0.00 0.00 2.90
3192 3523 7.385894 AGTAGATTTGAGAAGCCCATAAGAT 57.614 36.000 0.00 0.00 0.00 2.40
3193 3524 6.814954 AGTAGATTTGAGAAGCCCATAAGA 57.185 37.500 0.00 0.00 0.00 2.10
3194 3525 6.642950 CGTAGTAGATTTGAGAAGCCCATAAG 59.357 42.308 0.00 0.00 0.00 1.73
3195 3526 6.097839 ACGTAGTAGATTTGAGAAGCCCATAA 59.902 38.462 0.00 0.00 41.94 1.90
3196 3527 5.597182 ACGTAGTAGATTTGAGAAGCCCATA 59.403 40.000 0.00 0.00 41.94 2.74
3199 3530 4.388378 ACGTAGTAGATTTGAGAAGCCC 57.612 45.455 0.00 0.00 41.94 5.19
3219 3550 5.123227 TCAGGCATAGCATAAAACCAGTAC 58.877 41.667 0.00 0.00 0.00 2.73
3220 3551 5.366482 TCAGGCATAGCATAAAACCAGTA 57.634 39.130 0.00 0.00 0.00 2.74
3221 3552 4.235079 TCAGGCATAGCATAAAACCAGT 57.765 40.909 0.00 0.00 0.00 4.00
3233 3671 4.887748 ACGATCTACCAAATCAGGCATAG 58.112 43.478 0.00 0.00 0.00 2.23
3237 3675 4.508124 CACTAACGATCTACCAAATCAGGC 59.492 45.833 0.00 0.00 0.00 4.85
3246 3684 4.553323 ACAACACACACTAACGATCTACC 58.447 43.478 0.00 0.00 0.00 3.18
3249 3687 5.009310 TCAGTACAACACACACTAACGATCT 59.991 40.000 0.00 0.00 0.00 2.75
3250 3688 5.217393 TCAGTACAACACACACTAACGATC 58.783 41.667 0.00 0.00 0.00 3.69
3251 3689 5.190992 TCAGTACAACACACACTAACGAT 57.809 39.130 0.00 0.00 0.00 3.73
3256 3694 6.031751 TGCATATCAGTACAACACACACTA 57.968 37.500 0.00 0.00 0.00 2.74
3257 3695 4.893608 TGCATATCAGTACAACACACACT 58.106 39.130 0.00 0.00 0.00 3.55
3275 3714 8.347771 GTGAACATGTGAAGACATATAATGCAT 58.652 33.333 0.00 0.00 41.12 3.96
3278 3717 9.712359 CAAGTGAACATGTGAAGACATATAATG 57.288 33.333 0.00 0.00 41.12 1.90
3279 3718 8.896744 CCAAGTGAACATGTGAAGACATATAAT 58.103 33.333 0.00 0.00 41.12 1.28
3280 3719 7.336679 CCCAAGTGAACATGTGAAGACATATAA 59.663 37.037 0.00 0.00 41.12 0.98
3285 3724 3.118075 TCCCAAGTGAACATGTGAAGACA 60.118 43.478 0.00 0.00 36.22 3.41
3286 3725 3.476552 TCCCAAGTGAACATGTGAAGAC 58.523 45.455 0.00 0.00 0.00 3.01
3292 3731 6.484288 TGAAATATCTCCCAAGTGAACATGT 58.516 36.000 0.00 0.00 0.00 3.21
3316 3755 9.640963 GTATATTTCTTTCAGCTGTCGGTATAT 57.359 33.333 14.67 12.63 0.00 0.86
3317 3756 8.857098 AGTATATTTCTTTCAGCTGTCGGTATA 58.143 33.333 14.67 6.63 0.00 1.47
3318 3757 7.727181 AGTATATTTCTTTCAGCTGTCGGTAT 58.273 34.615 14.67 7.15 0.00 2.73
3322 3761 9.900710 ATAGTAGTATATTTCTTTCAGCTGTCG 57.099 33.333 14.67 3.49 0.00 4.35
3344 3783 8.832521 TCGAACATGTGAACAAAACTTAATAGT 58.167 29.630 0.00 0.00 35.68 2.12
3345 3784 9.658475 TTCGAACATGTGAACAAAACTTAATAG 57.342 29.630 0.00 0.00 0.00 1.73
3347 3786 8.967218 CATTCGAACATGTGAACAAAACTTAAT 58.033 29.630 0.00 0.00 0.00 1.40
3348 3787 7.971168 ACATTCGAACATGTGAACAAAACTTAA 59.029 29.630 0.00 0.00 35.97 1.85
3349 3788 7.476667 ACATTCGAACATGTGAACAAAACTTA 58.523 30.769 0.00 0.00 35.97 2.24
3350 3789 6.329496 ACATTCGAACATGTGAACAAAACTT 58.671 32.000 0.00 0.00 35.97 2.66
3351 3790 5.890334 ACATTCGAACATGTGAACAAAACT 58.110 33.333 0.00 0.00 35.97 2.66
3352 3791 6.034470 ACAACATTCGAACATGTGAACAAAAC 59.966 34.615 0.00 0.00 37.46 2.43
3353 3792 6.096036 ACAACATTCGAACATGTGAACAAAA 58.904 32.000 0.00 0.00 37.46 2.44
3354 3793 5.645624 ACAACATTCGAACATGTGAACAAA 58.354 33.333 0.00 0.00 37.46 2.83
3355 3794 5.242069 ACAACATTCGAACATGTGAACAA 57.758 34.783 0.00 0.00 37.46 2.83
3356 3795 4.891627 ACAACATTCGAACATGTGAACA 57.108 36.364 0.00 0.00 37.46 3.18
3357 3796 5.985781 ACTACAACATTCGAACATGTGAAC 58.014 37.500 17.70 0.00 37.46 3.18
3358 3797 7.899178 ATACTACAACATTCGAACATGTGAA 57.101 32.000 17.70 0.00 37.46 3.18
3359 3798 9.030301 CATATACTACAACATTCGAACATGTGA 57.970 33.333 17.70 0.00 37.46 3.58
3360 3799 8.817100 ACATATACTACAACATTCGAACATGTG 58.183 33.333 17.70 8.36 37.46 3.21
3361 3800 8.942338 ACATATACTACAACATTCGAACATGT 57.058 30.769 0.00 8.70 39.17 3.21
3378 3817 8.927675 TGTGGGAACAAAACTTAACATATACT 57.072 30.769 0.00 0.00 46.06 2.12
3384 3823 5.187967 ACCAATGTGGGAACAAAACTTAACA 59.812 36.000 0.00 0.00 46.06 2.41
3391 3830 5.428184 AAAAGACCAATGTGGGAACAAAA 57.572 34.783 0.00 0.00 46.06 2.44
3407 3846 8.548721 CATTAGATCAACGGTATGGTAAAAGAC 58.451 37.037 0.00 0.00 0.00 3.01
3412 3851 5.919755 TGCATTAGATCAACGGTATGGTAA 58.080 37.500 0.00 0.00 0.00 2.85
3414 3853 4.415881 TGCATTAGATCAACGGTATGGT 57.584 40.909 0.00 0.00 0.00 3.55
3422 3890 5.066893 TGGAGAAGCAATGCATTAGATCAAC 59.933 40.000 12.53 7.76 0.00 3.18
3454 3922 4.156922 TCTTCTTTGACCGCAACTGAAAAA 59.843 37.500 0.00 0.00 32.79 1.94
3462 3930 2.639065 ACACTTCTTCTTTGACCGCAA 58.361 42.857 0.00 0.00 0.00 4.85
3522 3990 3.818773 GGCAAGCTTAAACAGGTAGTCAA 59.181 43.478 0.00 0.00 30.90 3.18
3528 3996 2.623416 GTTCTGGCAAGCTTAAACAGGT 59.377 45.455 18.46 0.00 33.27 4.00
3583 4051 3.450457 ACCAAGTTTTCAACATCCAGCAA 59.550 39.130 0.00 0.00 0.00 3.91
3606 4090 0.034574 AGCATGCACCGGAACCATAA 60.035 50.000 21.98 0.00 0.00 1.90
3609 4093 2.359850 GAGCATGCACCGGAACCA 60.360 61.111 21.98 1.48 0.00 3.67
3628 4112 9.264719 CTAAGCTGTCATATTACAATCATGTCA 57.735 33.333 0.00 0.00 41.05 3.58
3656 4140 0.401738 CACTCCCTCCAGCCAAAAGA 59.598 55.000 0.00 0.00 0.00 2.52
3664 4148 3.571590 ACTAGATAAGCACTCCCTCCAG 58.428 50.000 0.00 0.00 0.00 3.86
3674 4158 8.642432 ACAGCACATAGATAAACTAGATAAGCA 58.358 33.333 0.00 0.00 34.35 3.91
3675 4159 9.482627 AACAGCACATAGATAAACTAGATAAGC 57.517 33.333 0.00 0.00 34.35 3.09
3684 4168 7.584987 ACAACAAGAACAGCACATAGATAAAC 58.415 34.615 0.00 0.00 0.00 2.01
3715 4199 3.341823 ACATCAGCAGGTGATTCAAGAC 58.658 45.455 12.62 0.00 44.05 3.01
3735 4219 1.029681 AAAGGGCACGAAAGACCAAC 58.970 50.000 0.00 0.00 33.48 3.77
3742 4226 1.732917 CAGCACAAAGGGCACGAAA 59.267 52.632 0.00 0.00 0.00 3.46
3893 4511 4.218417 ACACAAATCAATCAGGCTGTAACC 59.782 41.667 15.27 0.00 0.00 2.85
3897 4515 3.504906 CAGACACAAATCAATCAGGCTGT 59.495 43.478 15.27 0.00 0.00 4.40
3902 4520 3.485633 CACGCAGACACAAATCAATCAG 58.514 45.455 0.00 0.00 0.00 2.90
3965 4584 6.046885 TGTACAACTACACCGTTTTAAAGC 57.953 37.500 0.00 0.00 0.00 3.51
3969 4588 9.539825 TTAAAGATGTACAACTACACCGTTTTA 57.460 29.630 6.02 0.00 35.63 1.52
3975 4594 5.935789 TGGCTTAAAGATGTACAACTACACC 59.064 40.000 6.02 5.15 35.63 4.16
4014 4633 7.771826 GCCACAAGAGTAAACCTACCATATTAA 59.228 37.037 0.00 0.00 0.00 1.40
4015 4634 7.126726 AGCCACAAGAGTAAACCTACCATATTA 59.873 37.037 0.00 0.00 0.00 0.98
4016 4635 6.069615 AGCCACAAGAGTAAACCTACCATATT 60.070 38.462 0.00 0.00 0.00 1.28
4017 4636 5.428783 AGCCACAAGAGTAAACCTACCATAT 59.571 40.000 0.00 0.00 0.00 1.78
4018 4637 4.781087 AGCCACAAGAGTAAACCTACCATA 59.219 41.667 0.00 0.00 0.00 2.74
4019 4638 3.587506 AGCCACAAGAGTAAACCTACCAT 59.412 43.478 0.00 0.00 0.00 3.55
4020 4639 2.976882 AGCCACAAGAGTAAACCTACCA 59.023 45.455 0.00 0.00 0.00 3.25
4021 4640 3.335579 CAGCCACAAGAGTAAACCTACC 58.664 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.