Multiple sequence alignment - TraesCS4D01G218200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G218200 chr4D 100.000 7718 0 0 1 7718 373846760 373854477 0.000000e+00 14253.0
1 TraesCS4D01G218200 chr4D 95.868 121 2 2 93 210 373846780 373846900 7.900000e-45 193.0
2 TraesCS4D01G218200 chr4D 95.868 121 2 2 21 141 373846852 373846969 7.900000e-45 193.0
3 TraesCS4D01G218200 chr4A 95.252 3412 100 26 547 3921 90601741 90598355 0.000000e+00 5347.0
4 TraesCS4D01G218200 chr4A 92.450 2106 113 18 5227 7314 90596845 90594768 0.000000e+00 2966.0
5 TraesCS4D01G218200 chr4A 90.150 1198 83 14 3909 5079 90598336 90597147 0.000000e+00 1526.0
6 TraesCS4D01G218200 chr4A 95.355 409 16 3 7313 7718 90594682 90594274 0.000000e+00 647.0
7 TraesCS4D01G218200 chr4A 81.915 376 55 9 5713 6083 680568369 680568002 9.730000e-79 305.0
8 TraesCS4D01G218200 chr4A 82.524 103 12 4 4639 4739 739520070 739520168 1.380000e-12 86.1
9 TraesCS4D01G218200 chr4B 94.879 3027 93 22 537 3538 459938373 459941362 0.000000e+00 4674.0
10 TraesCS4D01G218200 chr4B 92.025 1605 71 25 6116 7690 459942297 459943874 0.000000e+00 2202.0
11 TraesCS4D01G218200 chr4B 91.947 832 40 10 3542 4349 459941474 459942302 0.000000e+00 1140.0
12 TraesCS4D01G218200 chr2B 88.943 1022 60 17 6146 7148 577500985 577499998 0.000000e+00 1212.0
13 TraesCS4D01G218200 chr2B 89.033 693 49 10 3665 4349 577501880 577501207 0.000000e+00 833.0
14 TraesCS4D01G218200 chr2B 74.875 800 141 37 4386 5154 517918343 517917573 7.520000e-80 309.0
15 TraesCS4D01G218200 chr7B 88.867 1024 57 22 6146 7148 721582225 721581238 0.000000e+00 1206.0
16 TraesCS4D01G218200 chr7B 89.466 693 46 10 3665 4349 721583121 721582448 0.000000e+00 850.0
17 TraesCS4D01G218200 chr3D 97.327 449 10 2 93 541 551347147 551346701 0.000000e+00 761.0
18 TraesCS4D01G218200 chr3D 95.745 141 3 2 1 141 551347167 551347030 2.800000e-54 224.0
19 TraesCS4D01G218200 chr3D 80.738 244 36 11 4871 5113 498890419 498890186 6.150000e-41 180.0
20 TraesCS4D01G218200 chr7D 79.027 1192 186 33 4942 6119 132159966 132161107 0.000000e+00 758.0
21 TraesCS4D01G218200 chr2D 89.013 446 42 5 102 542 645060369 645060812 5.270000e-151 545.0
22 TraesCS4D01G218200 chr2D 80.863 371 63 3 4788 5151 440177964 440177595 1.270000e-72 285.0
23 TraesCS4D01G218200 chr2D 83.761 117 11 5 30 141 645060369 645060482 3.810000e-18 104.0
24 TraesCS4D01G218200 chr6B 88.009 442 33 5 3665 4099 32205340 32204912 8.940000e-139 505.0
25 TraesCS4D01G218200 chr6B 74.661 884 173 34 5246 6121 593998000 593997160 2.060000e-90 344.0
26 TraesCS4D01G218200 chr6B 79.024 410 69 13 6340 6742 271825160 271825559 1.650000e-66 265.0
27 TraesCS4D01G218200 chr6D 73.993 1192 223 64 4839 5995 352760374 352759235 3.350000e-108 403.0
28 TraesCS4D01G218200 chr6D 76.864 523 73 21 5602 6119 3813990 3814469 1.290000e-62 252.0
29 TraesCS4D01G218200 chr2A 77.379 725 131 18 4965 5686 18314883 18315577 4.340000e-107 399.0
30 TraesCS4D01G218200 chr2A 75.806 620 106 28 4563 5151 583595349 583594743 2.740000e-69 274.0
31 TraesCS4D01G218200 chr2A 92.105 38 2 1 104 141 113278366 113278330 1.400000e-02 52.8
32 TraesCS4D01G218200 chr2A 92.105 38 2 1 32 69 113278366 113278330 1.400000e-02 52.8
33 TraesCS4D01G218200 chr5D 80.076 527 82 16 5605 6121 382199232 382198719 3.400000e-98 370.0
34 TraesCS4D01G218200 chr5D 78.079 406 68 11 5717 6117 395772044 395772433 3.600000e-58 237.0
35 TraesCS4D01G218200 chr5D 75.319 235 52 5 5884 6116 256725752 256725982 2.950000e-19 108.0
36 TraesCS4D01G218200 chr3A 73.859 723 128 33 5365 6079 428401058 428401727 1.670000e-56 231.0
37 TraesCS4D01G218200 chr3A 72.742 609 146 16 5213 5811 468518062 468517464 3.680000e-43 187.0
38 TraesCS4D01G218200 chr3A 72.487 567 120 31 4932 5492 432822689 432822153 4.820000e-32 150.0
39 TraesCS4D01G218200 chr5A 70.823 1203 281 60 4944 6119 342572199 342571040 6.070000e-51 213.0
40 TraesCS4D01G218200 chr1D 73.509 570 110 32 4932 5492 346846689 346847226 2.210000e-40 178.0
41 TraesCS4D01G218200 chr7A 79.279 222 42 3 4853 5073 148663275 148663057 1.340000e-32 152.0
42 TraesCS4D01G218200 chr3B 91.071 112 9 1 25 136 59467173 59467283 4.820000e-32 150.0
43 TraesCS4D01G218200 chr3B 86.486 74 7 3 4349 4419 18752349 18752276 2.310000e-10 78.7
44 TraesCS4D01G218200 chr3B 97.436 39 1 0 26 64 59467245 59467283 5.000000e-07 67.6
45 TraesCS4D01G218200 chr1A 77.626 219 36 12 4965 5173 464860860 464860645 3.780000e-23 121.0
46 TraesCS4D01G218200 chr5B 89.552 67 4 3 998 1062 613275484 613275419 1.790000e-11 82.4
47 TraesCS4D01G218200 chr1B 87.879 66 1 6 4349 4411 449555494 449555433 3.860000e-08 71.3
48 TraesCS4D01G218200 chr6A 100.000 28 0 0 32 59 114280538 114280565 1.400000e-02 52.8
49 TraesCS4D01G218200 chr6A 100.000 28 0 0 104 131 114280538 114280565 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G218200 chr4D 373846760 373854477 7717 False 14253.0 14253 100.000000 1 7718 1 chr4D.!!$F1 7717
1 TraesCS4D01G218200 chr4A 90594274 90601741 7467 True 2621.5 5347 93.301750 547 7718 4 chr4A.!!$R2 7171
2 TraesCS4D01G218200 chr4B 459938373 459943874 5501 False 2672.0 4674 92.950333 537 7690 3 chr4B.!!$F1 7153
3 TraesCS4D01G218200 chr2B 577499998 577501880 1882 True 1022.5 1212 88.988000 3665 7148 2 chr2B.!!$R2 3483
4 TraesCS4D01G218200 chr2B 517917573 517918343 770 True 309.0 309 74.875000 4386 5154 1 chr2B.!!$R1 768
5 TraesCS4D01G218200 chr7B 721581238 721583121 1883 True 1028.0 1206 89.166500 3665 7148 2 chr7B.!!$R1 3483
6 TraesCS4D01G218200 chr7D 132159966 132161107 1141 False 758.0 758 79.027000 4942 6119 1 chr7D.!!$F1 1177
7 TraesCS4D01G218200 chr6B 593997160 593998000 840 True 344.0 344 74.661000 5246 6121 1 chr6B.!!$R2 875
8 TraesCS4D01G218200 chr6D 352759235 352760374 1139 True 403.0 403 73.993000 4839 5995 1 chr6D.!!$R1 1156
9 TraesCS4D01G218200 chr2A 18314883 18315577 694 False 399.0 399 77.379000 4965 5686 1 chr2A.!!$F1 721
10 TraesCS4D01G218200 chr2A 583594743 583595349 606 True 274.0 274 75.806000 4563 5151 1 chr2A.!!$R1 588
11 TraesCS4D01G218200 chr5D 382198719 382199232 513 True 370.0 370 80.076000 5605 6121 1 chr5D.!!$R1 516
12 TraesCS4D01G218200 chr3A 428401058 428401727 669 False 231.0 231 73.859000 5365 6079 1 chr3A.!!$F1 714
13 TraesCS4D01G218200 chr5A 342571040 342572199 1159 True 213.0 213 70.823000 4944 6119 1 chr5A.!!$R1 1175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.113385 TTCGGGGGAATTTGCCTTCA 59.887 50.0 6.91 0.0 0.00 3.02 F
422 423 0.113385 TCGGGGGAATTTGCCTTCAA 59.887 50.0 6.91 0.0 0.00 2.69 F
423 424 0.246360 CGGGGGAATTTGCCTTCAAC 59.754 55.0 6.91 0.0 30.75 3.18 F
2346 2365 0.039165 CCAACTTCCTTGCGCCTTTC 60.039 55.0 4.18 0.0 0.00 2.62 F
4362 4569 0.817654 GCATTAGGCCAACTCCAACC 59.182 55.0 5.01 0.0 36.11 3.77 F
5081 5352 0.325933 CACCCACCTCATGAGCTTCA 59.674 55.0 17.76 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2158 0.544223 GGGAAAGAGGGCCTTCTCTC 59.456 60.000 19.07 14.19 42.75 3.20 R
2346 2365 2.628178 TGTAGTTCTCAGATATGGCCCG 59.372 50.000 0.00 0.00 0.00 6.13 R
2768 2794 4.399004 AGAATCAATCCTCTCCAACTCG 57.601 45.455 0.00 0.00 0.00 4.18 R
4405 4612 0.175989 TCCGTTTTGCCAACCCAAAC 59.824 50.000 0.00 0.00 34.68 2.93 R
5686 6167 0.616111 GCTCTTCCACCTCCTCTCCA 60.616 60.000 0.00 0.00 0.00 3.86 R
7363 8222 1.206578 CAATGTGTGGTCGGCGAAC 59.793 57.895 19.86 19.86 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.597728 CTACCTCGCCGCCTCCTC 61.598 72.222 0.00 0.00 0.00 3.71
67 68 4.827087 CATCCTCGCAGCCGCACT 62.827 66.667 0.00 0.00 38.40 4.40
68 69 4.521062 ATCCTCGCAGCCGCACTC 62.521 66.667 0.00 0.00 38.40 3.51
111 112 4.821589 CAACCTCGCCGCCTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
139 140 4.827087 CATCCTCGCAGCCGCACT 62.827 66.667 0.00 0.00 38.40 4.40
140 141 4.521062 ATCCTCGCAGCCGCACTC 62.521 66.667 0.00 0.00 38.40 3.51
183 184 4.821589 CAACCTCGCCGCCTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
231 232 2.631428 CGCAGGTTCACAACGTGG 59.369 61.111 10.24 0.00 44.92 4.94
232 233 2.177580 CGCAGGTTCACAACGTGGT 61.178 57.895 10.24 0.00 44.92 4.16
233 234 1.355210 GCAGGTTCACAACGTGGTG 59.645 57.895 17.39 17.39 44.92 4.17
234 235 1.355210 CAGGTTCACAACGTGGTGC 59.645 57.895 18.67 5.16 42.04 5.01
235 236 1.822186 AGGTTCACAACGTGGTGCC 60.822 57.895 18.67 14.33 38.66 5.01
236 237 2.719354 GTTCACAACGTGGTGCCC 59.281 61.111 18.67 7.10 38.66 5.36
237 238 2.897846 TTCACAACGTGGTGCCCG 60.898 61.111 18.67 0.00 38.66 6.13
240 241 4.947147 ACAACGTGGTGCCCGCAT 62.947 61.111 0.00 0.00 32.88 4.73
241 242 2.744318 CAACGTGGTGCCCGCATA 60.744 61.111 0.00 0.00 32.88 3.14
242 243 2.744709 AACGTGGTGCCCGCATAC 60.745 61.111 0.00 0.00 32.88 2.39
295 296 2.668212 CTGCTCCAACCGCCGAAA 60.668 61.111 0.00 0.00 0.00 3.46
296 297 2.668212 TGCTCCAACCGCCGAAAG 60.668 61.111 0.00 0.00 0.00 2.62
313 314 2.967615 GGCCTCGCCGCTGTAATC 60.968 66.667 0.00 0.00 39.62 1.75
314 315 3.330853 GCCTCGCCGCTGTAATCG 61.331 66.667 0.00 0.00 0.00 3.34
315 316 3.330853 CCTCGCCGCTGTAATCGC 61.331 66.667 0.00 0.00 0.00 4.58
316 317 3.330853 CTCGCCGCTGTAATCGCC 61.331 66.667 0.00 0.00 0.00 5.54
319 320 4.884257 GCCGCTGTAATCGCCGGA 62.884 66.667 5.05 0.00 43.20 5.14
320 321 2.202824 CCGCTGTAATCGCCGGAA 60.203 61.111 5.05 0.00 43.20 4.30
321 322 1.594293 CCGCTGTAATCGCCGGAAT 60.594 57.895 5.05 0.00 43.20 3.01
322 323 1.564622 CGCTGTAATCGCCGGAATG 59.435 57.895 5.05 0.00 0.00 2.67
323 324 0.874175 CGCTGTAATCGCCGGAATGA 60.874 55.000 5.05 0.00 0.00 2.57
324 325 1.512926 GCTGTAATCGCCGGAATGAT 58.487 50.000 5.05 1.23 0.00 2.45
325 326 2.683968 GCTGTAATCGCCGGAATGATA 58.316 47.619 5.05 0.00 0.00 2.15
326 327 3.064207 GCTGTAATCGCCGGAATGATAA 58.936 45.455 5.05 0.00 0.00 1.75
327 328 3.123621 GCTGTAATCGCCGGAATGATAAG 59.876 47.826 5.05 5.33 0.00 1.73
328 329 3.659786 TGTAATCGCCGGAATGATAAGG 58.340 45.455 5.05 0.00 0.00 2.69
329 330 2.930826 AATCGCCGGAATGATAAGGT 57.069 45.000 5.05 0.00 0.00 3.50
330 331 2.169832 ATCGCCGGAATGATAAGGTG 57.830 50.000 5.05 0.00 35.72 4.00
331 332 1.116308 TCGCCGGAATGATAAGGTGA 58.884 50.000 5.05 0.00 40.51 4.02
332 333 1.068588 TCGCCGGAATGATAAGGTGAG 59.931 52.381 5.05 0.00 38.23 3.51
333 334 1.873903 CGCCGGAATGATAAGGTGAGG 60.874 57.143 5.05 0.00 36.43 3.86
334 335 1.543429 GCCGGAATGATAAGGTGAGGG 60.543 57.143 5.05 0.00 0.00 4.30
335 336 1.072331 CCGGAATGATAAGGTGAGGGG 59.928 57.143 0.00 0.00 0.00 4.79
336 337 2.047061 CGGAATGATAAGGTGAGGGGA 58.953 52.381 0.00 0.00 0.00 4.81
337 338 2.639839 CGGAATGATAAGGTGAGGGGAT 59.360 50.000 0.00 0.00 0.00 3.85
338 339 3.838317 CGGAATGATAAGGTGAGGGGATA 59.162 47.826 0.00 0.00 0.00 2.59
339 340 4.322801 CGGAATGATAAGGTGAGGGGATAC 60.323 50.000 0.00 0.00 0.00 2.24
340 341 4.846940 GGAATGATAAGGTGAGGGGATACT 59.153 45.833 0.00 0.00 0.00 2.12
341 342 5.046231 GGAATGATAAGGTGAGGGGATACTC 60.046 48.000 0.00 0.00 37.99 2.59
349 350 2.613421 GGGGATACTCGGGGGAGT 59.387 66.667 2.03 2.03 39.08 3.85
350 351 1.837499 GGGGATACTCGGGGGAGTG 60.837 68.421 6.99 0.00 36.68 3.51
351 352 1.837499 GGGATACTCGGGGGAGTGG 60.837 68.421 6.99 0.00 36.68 4.00
352 353 1.837499 GGATACTCGGGGGAGTGGG 60.837 68.421 6.99 0.00 36.68 4.61
353 354 1.075450 GATACTCGGGGGAGTGGGT 60.075 63.158 6.99 0.00 36.68 4.51
354 355 1.382695 ATACTCGGGGGAGTGGGTG 60.383 63.158 6.99 0.00 36.68 4.61
355 356 1.882189 ATACTCGGGGGAGTGGGTGA 61.882 60.000 6.99 0.00 36.68 4.02
356 357 2.509931 TACTCGGGGGAGTGGGTGAG 62.510 65.000 6.99 0.00 36.68 3.51
362 363 4.394712 GGAGTGGGTGAGCCGGTG 62.395 72.222 1.90 0.00 34.97 4.94
363 364 3.311110 GAGTGGGTGAGCCGGTGA 61.311 66.667 1.90 0.00 34.97 4.02
364 365 2.607750 AGTGGGTGAGCCGGTGAT 60.608 61.111 1.90 0.00 34.97 3.06
365 366 2.185310 GAGTGGGTGAGCCGGTGATT 62.185 60.000 1.90 0.00 34.97 2.57
366 367 2.040544 GTGGGTGAGCCGGTGATTG 61.041 63.158 1.90 0.00 34.97 2.67
367 368 2.351276 GGGTGAGCCGGTGATTGT 59.649 61.111 1.90 0.00 34.97 2.71
368 369 1.745489 GGGTGAGCCGGTGATTGTC 60.745 63.158 1.90 0.00 34.97 3.18
369 370 2.100631 GGTGAGCCGGTGATTGTCG 61.101 63.158 1.90 0.00 0.00 4.35
371 372 2.511600 GAGCCGGTGATTGTCGGG 60.512 66.667 1.90 0.00 45.75 5.14
372 373 4.096003 AGCCGGTGATTGTCGGGG 62.096 66.667 1.90 0.00 45.75 5.73
373 374 4.090588 GCCGGTGATTGTCGGGGA 62.091 66.667 1.90 0.00 45.75 4.81
374 375 2.666207 CCGGTGATTGTCGGGGAA 59.334 61.111 0.00 0.00 42.32 3.97
375 376 1.003112 CCGGTGATTGTCGGGGAAA 60.003 57.895 0.00 0.00 42.32 3.13
376 377 1.024579 CCGGTGATTGTCGGGGAAAG 61.025 60.000 0.00 0.00 42.32 2.62
377 378 1.024579 CGGTGATTGTCGGGGAAAGG 61.025 60.000 0.00 0.00 0.00 3.11
378 379 0.326927 GGTGATTGTCGGGGAAAGGA 59.673 55.000 0.00 0.00 0.00 3.36
379 380 1.064685 GGTGATTGTCGGGGAAAGGAT 60.065 52.381 0.00 0.00 0.00 3.24
380 381 2.171870 GGTGATTGTCGGGGAAAGGATA 59.828 50.000 0.00 0.00 0.00 2.59
381 382 3.371166 GGTGATTGTCGGGGAAAGGATAA 60.371 47.826 0.00 0.00 0.00 1.75
382 383 3.877508 GTGATTGTCGGGGAAAGGATAAG 59.122 47.826 0.00 0.00 0.00 1.73
383 384 3.118038 TGATTGTCGGGGAAAGGATAAGG 60.118 47.826 0.00 0.00 0.00 2.69
384 385 1.961133 TGTCGGGGAAAGGATAAGGT 58.039 50.000 0.00 0.00 0.00 3.50
385 386 3.119009 TGTCGGGGAAAGGATAAGGTA 57.881 47.619 0.00 0.00 0.00 3.08
386 387 2.767960 TGTCGGGGAAAGGATAAGGTAC 59.232 50.000 0.00 0.00 0.00 3.34
387 388 2.034124 TCGGGGAAAGGATAAGGTACG 58.966 52.381 0.00 0.00 0.00 3.67
388 389 1.539712 CGGGGAAAGGATAAGGTACGC 60.540 57.143 0.00 0.00 0.00 4.42
389 390 1.767088 GGGGAAAGGATAAGGTACGCT 59.233 52.381 0.00 0.00 0.00 5.07
390 391 2.967887 GGGGAAAGGATAAGGTACGCTA 59.032 50.000 0.00 0.00 0.00 4.26
391 392 3.006644 GGGGAAAGGATAAGGTACGCTAG 59.993 52.174 0.00 0.00 0.00 3.42
392 393 3.640498 GGGAAAGGATAAGGTACGCTAGT 59.360 47.826 0.00 0.00 0.00 2.57
393 394 4.829492 GGGAAAGGATAAGGTACGCTAGTA 59.171 45.833 0.00 0.00 0.00 1.82
394 395 5.302823 GGGAAAGGATAAGGTACGCTAGTAA 59.697 44.000 0.00 0.00 34.16 2.24
395 396 6.183360 GGGAAAGGATAAGGTACGCTAGTAAA 60.183 42.308 0.00 0.00 34.16 2.01
396 397 7.267857 GGAAAGGATAAGGTACGCTAGTAAAA 58.732 38.462 0.00 0.00 34.16 1.52
397 398 7.765819 GGAAAGGATAAGGTACGCTAGTAAAAA 59.234 37.037 0.00 0.00 34.16 1.94
415 416 2.804697 AAAACGTTCGGGGGAATTTG 57.195 45.000 0.00 0.00 0.00 2.32
416 417 0.315886 AAACGTTCGGGGGAATTTGC 59.684 50.000 0.00 0.00 0.00 3.68
417 418 1.529152 AACGTTCGGGGGAATTTGCC 61.529 55.000 0.00 0.00 0.00 4.52
418 419 1.677633 CGTTCGGGGGAATTTGCCT 60.678 57.895 6.91 0.00 0.00 4.75
419 420 1.248101 CGTTCGGGGGAATTTGCCTT 61.248 55.000 6.91 0.00 0.00 4.35
420 421 0.530744 GTTCGGGGGAATTTGCCTTC 59.469 55.000 6.91 0.00 0.00 3.46
421 422 0.113385 TTCGGGGGAATTTGCCTTCA 59.887 50.000 6.91 0.00 0.00 3.02
422 423 0.113385 TCGGGGGAATTTGCCTTCAA 59.887 50.000 6.91 0.00 0.00 2.69
423 424 0.246360 CGGGGGAATTTGCCTTCAAC 59.754 55.000 6.91 0.00 30.75 3.18
424 425 0.613260 GGGGGAATTTGCCTTCAACC 59.387 55.000 6.91 0.00 30.75 3.77
425 426 0.613260 GGGGAATTTGCCTTCAACCC 59.387 55.000 6.91 0.00 36.05 4.11
426 427 0.246360 GGGAATTTGCCTTCAACCCG 59.754 55.000 0.00 0.00 29.70 5.28
427 428 1.253100 GGAATTTGCCTTCAACCCGA 58.747 50.000 0.00 0.00 30.75 5.14
428 429 1.616374 GGAATTTGCCTTCAACCCGAA 59.384 47.619 0.00 0.00 30.75 4.30
429 430 2.609491 GGAATTTGCCTTCAACCCGAAC 60.609 50.000 0.00 0.00 30.75 3.95
430 431 0.596082 ATTTGCCTTCAACCCGAACG 59.404 50.000 0.00 0.00 30.75 3.95
431 432 2.065906 TTTGCCTTCAACCCGAACGC 62.066 55.000 0.00 0.00 36.51 4.84
432 433 4.084888 GCCTTCAACCCGAACGCG 62.085 66.667 3.53 3.53 37.24 6.01
433 434 2.663852 CCTTCAACCCGAACGCGT 60.664 61.111 5.58 5.58 35.23 6.01
434 435 2.664436 CCTTCAACCCGAACGCGTC 61.664 63.158 14.44 5.31 35.23 5.19
435 436 2.662527 TTCAACCCGAACGCGTCC 60.663 61.111 14.44 0.00 35.23 4.79
436 437 4.668118 TCAACCCGAACGCGTCCC 62.668 66.667 14.44 6.90 35.23 4.46
437 438 4.675029 CAACCCGAACGCGTCCCT 62.675 66.667 14.44 0.00 35.23 4.20
438 439 4.675029 AACCCGAACGCGTCCCTG 62.675 66.667 14.44 4.57 35.23 4.45
442 443 4.143333 CGAACGCGTCCCTGGGAT 62.143 66.667 20.40 1.20 32.73 3.85
443 444 2.511600 GAACGCGTCCCTGGGATG 60.512 66.667 27.45 27.45 41.35 3.51
444 445 3.000819 AACGCGTCCCTGGGATGA 61.001 61.111 34.10 3.54 40.94 2.92
445 446 3.310860 AACGCGTCCCTGGGATGAC 62.311 63.158 34.10 23.76 40.94 3.06
448 449 2.184322 CGTCCCTGGGATGACGTG 59.816 66.667 27.74 6.41 46.83 4.49
449 450 2.584608 GTCCCTGGGATGACGTGG 59.415 66.667 20.40 0.00 32.73 4.94
450 451 3.399181 TCCCTGGGATGACGTGGC 61.399 66.667 12.53 0.00 0.00 5.01
451 452 3.716195 CCCTGGGATGACGTGGCA 61.716 66.667 7.01 0.00 0.00 4.92
452 453 2.350895 CCTGGGATGACGTGGCAA 59.649 61.111 0.00 0.00 0.00 4.52
453 454 1.077501 CCTGGGATGACGTGGCAAT 60.078 57.895 0.00 0.00 0.00 3.56
454 455 1.378882 CCTGGGATGACGTGGCAATG 61.379 60.000 0.00 0.00 0.00 2.82
455 456 1.378382 TGGGATGACGTGGCAATGG 60.378 57.895 0.00 0.00 0.00 3.16
456 457 2.120909 GGGATGACGTGGCAATGGG 61.121 63.158 0.00 0.00 0.00 4.00
457 458 1.077787 GGATGACGTGGCAATGGGA 60.078 57.895 0.00 0.00 0.00 4.37
458 459 0.466189 GGATGACGTGGCAATGGGAT 60.466 55.000 0.00 0.00 0.00 3.85
459 460 1.202758 GGATGACGTGGCAATGGGATA 60.203 52.381 0.00 0.00 0.00 2.59
460 461 1.873591 GATGACGTGGCAATGGGATAC 59.126 52.381 0.00 0.00 0.00 2.24
476 477 4.630894 GGATACCATCAAAATTCGTGCA 57.369 40.909 0.00 0.00 0.00 4.57
477 478 4.992688 GGATACCATCAAAATTCGTGCAA 58.007 39.130 0.00 0.00 0.00 4.08
478 479 4.798387 GGATACCATCAAAATTCGTGCAAC 59.202 41.667 0.00 0.00 0.00 4.17
489 490 3.342627 GTGCAACGGCTACACGCA 61.343 61.111 0.00 0.00 41.67 5.24
490 491 3.342627 TGCAACGGCTACACGCAC 61.343 61.111 0.00 0.00 41.67 5.34
491 492 4.424430 GCAACGGCTACACGCACG 62.424 66.667 0.00 0.00 41.67 5.34
492 493 3.033764 CAACGGCTACACGCACGT 61.034 61.111 0.00 0.00 43.83 4.49
493 494 2.279650 AACGGCTACACGCACGTT 60.280 55.556 0.00 0.00 44.67 3.99
494 495 2.305127 AACGGCTACACGCACGTTC 61.305 57.895 0.00 0.00 45.62 3.95
495 496 3.823421 CGGCTACACGCACGTTCG 61.823 66.667 5.94 5.94 41.67 3.95
496 497 3.475774 GGCTACACGCACGTTCGG 61.476 66.667 13.06 3.59 41.67 4.30
497 498 4.130281 GCTACACGCACGTTCGGC 62.130 66.667 13.06 1.44 38.92 5.54
498 499 2.430244 CTACACGCACGTTCGGCT 60.430 61.111 13.06 0.00 0.00 5.52
499 500 2.716828 CTACACGCACGTTCGGCTG 61.717 63.158 13.06 4.58 0.00 4.85
505 506 2.972505 CACGTTCGGCTGCAGGTT 60.973 61.111 17.12 0.00 0.00 3.50
506 507 2.665185 ACGTTCGGCTGCAGGTTC 60.665 61.111 17.12 0.00 0.00 3.62
507 508 2.664851 CGTTCGGCTGCAGGTTCA 60.665 61.111 17.12 0.00 0.00 3.18
508 509 2.250939 CGTTCGGCTGCAGGTTCAA 61.251 57.895 17.12 0.00 0.00 2.69
509 510 1.781025 CGTTCGGCTGCAGGTTCAAA 61.781 55.000 17.12 0.00 0.00 2.69
510 511 0.383949 GTTCGGCTGCAGGTTCAAAA 59.616 50.000 17.12 0.00 0.00 2.44
511 512 1.107114 TTCGGCTGCAGGTTCAAAAA 58.893 45.000 17.12 0.00 0.00 1.94
534 535 2.628194 CGAATGTTCGGCAGTTATCG 57.372 50.000 7.24 0.00 46.30 2.92
535 536 1.924524 CGAATGTTCGGCAGTTATCGT 59.075 47.619 7.24 0.00 46.30 3.73
554 555 3.120130 TCGTTCCCGTAAACATTTGATGC 60.120 43.478 0.00 0.00 35.01 3.91
560 561 2.837878 CGTAAACATTTGATGCCGTTCG 59.162 45.455 0.00 0.00 0.00 3.95
751 770 4.404654 GCCGCAAAGGAACGCCAG 62.405 66.667 0.00 0.00 45.00 4.85
964 983 2.675423 CCCACTGACGTCTCCCGA 60.675 66.667 17.92 0.00 40.70 5.14
965 984 2.273179 CCCACTGACGTCTCCCGAA 61.273 63.158 17.92 0.00 40.70 4.30
966 985 1.605058 CCCACTGACGTCTCCCGAAT 61.605 60.000 17.92 0.00 40.70 3.34
967 986 1.100510 CCACTGACGTCTCCCGAATA 58.899 55.000 17.92 0.00 40.70 1.75
1425 1444 2.579787 CACGCGCCCTACTCTTCG 60.580 66.667 5.73 0.00 0.00 3.79
1428 1447 2.583593 GCGCCCTACTCTTCGCTG 60.584 66.667 0.00 0.00 43.70 5.18
1674 1693 2.035193 GCTCTTCCACGATGCTGATCTA 59.965 50.000 0.00 0.00 0.00 1.98
1848 1867 0.606604 TGGACTTCAGGCCGTACTTC 59.393 55.000 0.00 0.00 0.00 3.01
2096 2115 3.885484 ACTCGACAAACTTGCAATCAG 57.115 42.857 0.00 0.00 0.00 2.90
2139 2158 8.186821 GGTCTATTGAATTCAATCAAGTTGAGG 58.813 37.037 31.70 14.23 46.85 3.86
2256 2275 1.018752 TCATTGATGCCGGTGTGTCG 61.019 55.000 1.90 0.00 0.00 4.35
2259 2278 4.760047 GATGCCGGTGTGTCGCCT 62.760 66.667 1.90 0.00 0.00 5.52
2346 2365 0.039165 CCAACTTCCTTGCGCCTTTC 60.039 55.000 4.18 0.00 0.00 2.62
2530 2556 7.626999 TTATATAGGTAAGCCAGAACCACAT 57.373 36.000 0.00 0.00 38.30 3.21
2534 2560 4.223144 AGGTAAGCCAGAACCACATTTTT 58.777 39.130 0.00 0.00 38.30 1.94
2768 2794 6.590292 TCGAGAAGTTAATGTCAAAGATGTCC 59.410 38.462 0.00 0.00 0.00 4.02
2889 2915 9.844790 CTGTCACTTGCAAAAATAAATAGATCA 57.155 29.630 0.00 0.00 0.00 2.92
2970 2996 5.779922 ACAAACTACGAAGATAAGCTCACA 58.220 37.500 0.00 0.00 0.00 3.58
2986 3012 6.246420 AGCTCACAAACAACTCACATTATC 57.754 37.500 0.00 0.00 0.00 1.75
3021 3058 9.920133 AGTATATGTGCATAACTAAGACTGATG 57.080 33.333 0.00 0.00 0.00 3.07
3298 3336 7.021196 TCGAAAAGAGAGTTTGAGTTTGTTTG 58.979 34.615 0.00 0.00 0.00 2.93
3319 3357 8.536175 TGTTTGGTTAAGGAAGATTTTGAGTTT 58.464 29.630 0.00 0.00 0.00 2.66
3334 3372 9.624697 GATTTTGAGTTTGTTAGTCAATGCATA 57.375 29.630 0.00 0.00 43.80 3.14
3363 3401 7.122650 TCTCCAATTAAGCTAATTCCAGTTTGG 59.877 37.037 0.00 0.00 36.29 3.28
3618 3772 4.730949 TTAACTCGAGGTCCTATTGGTG 57.269 45.455 18.41 0.00 34.23 4.17
3695 3864 7.177392 CCTTGGTTTGACTGAATTATCCTTTCT 59.823 37.037 0.00 0.00 0.00 2.52
3860 4036 2.039480 ACATCACTGAGACTTGCCACAT 59.961 45.455 0.00 0.00 0.00 3.21
3861 4037 3.261643 ACATCACTGAGACTTGCCACATA 59.738 43.478 0.00 0.00 0.00 2.29
3907 4083 7.669427 TGGTTTTCTTGCATTTAATCAGATGT 58.331 30.769 0.00 0.00 0.00 3.06
3957 4164 8.770438 TGTAATTTCCTGCAATAAAATCCAAC 57.230 30.769 0.00 0.00 0.00 3.77
4000 4207 5.459107 CGCACACCAATCTGTACTCTATTAC 59.541 44.000 0.00 0.00 0.00 1.89
4172 4379 6.516739 TTTGTGTGACTGGTTTTGTTGATA 57.483 33.333 0.00 0.00 0.00 2.15
4306 4513 2.202570 CGCCTTCGGTAGTCGGTG 60.203 66.667 0.00 0.00 39.77 4.94
4333 4540 5.350633 ACGCCATTGGATTTTGATGTAATG 58.649 37.500 6.95 0.00 0.00 1.90
4361 4568 1.839424 AGCATTAGGCCAACTCCAAC 58.161 50.000 5.01 0.00 46.50 3.77
4362 4569 0.817654 GCATTAGGCCAACTCCAACC 59.182 55.000 5.01 0.00 36.11 3.77
4368 4575 2.046314 CCAACTCCAACCGGCGAT 60.046 61.111 9.30 0.00 0.00 4.58
4372 4579 3.781307 CTCCAACCGGCGATCCCA 61.781 66.667 9.30 0.00 0.00 4.37
4375 4582 1.752694 CCAACCGGCGATCCCAAAT 60.753 57.895 9.30 0.00 0.00 2.32
4726 4970 3.797353 CCATAGGTGGCTGGCGGT 61.797 66.667 0.00 0.00 39.01 5.68
4800 5053 2.278989 CGACGGTGACCACGTGTT 60.279 61.111 15.65 0.00 45.68 3.32
4865 5118 2.520020 ACACCGTCTCCGTCCACA 60.520 61.111 0.00 0.00 0.00 4.17
4951 5213 1.284841 CCTCCATGGCCTCCTCCTTT 61.285 60.000 6.96 0.00 0.00 3.11
5017 5285 0.755686 GGGCCATCATCTCTTCGAGT 59.244 55.000 4.39 0.00 0.00 4.18
5032 5300 2.003548 GAGTCCCTCCCATTGGGCT 61.004 63.158 17.60 7.69 43.94 5.19
5079 5350 1.064906 CATCACCCACCTCATGAGCTT 60.065 52.381 17.76 3.12 0.00 3.74
5081 5352 0.325933 CACCCACCTCATGAGCTTCA 59.674 55.000 17.76 0.00 0.00 3.02
5261 5686 1.003839 CAAAGTAGGACTGCCGCCA 60.004 57.895 0.00 0.00 39.96 5.69
5278 5703 1.603172 GCCATAGGTCGTTCTCATCCG 60.603 57.143 0.00 0.00 0.00 4.18
5368 5793 4.251760 CGCAGCGGTGATAGATCC 57.748 61.111 20.69 0.00 0.00 3.36
5373 5798 0.485099 AGCGGTGATAGATCCCCTCT 59.515 55.000 0.00 0.00 38.06 3.69
5450 5875 0.759959 TGCGAGTTGTTTGGGAGGTA 59.240 50.000 0.00 0.00 0.00 3.08
5451 5876 1.349688 TGCGAGTTGTTTGGGAGGTAT 59.650 47.619 0.00 0.00 0.00 2.73
5464 5889 1.019673 GAGGTATACGTCGCTCCACA 58.980 55.000 9.64 0.00 0.00 4.17
5579 6052 1.305381 CGGAGGAGGTGGAGGAAGT 60.305 63.158 0.00 0.00 0.00 3.01
5667 6148 2.777692 GGGATCCACTTCCAGACCATTA 59.222 50.000 15.23 0.00 37.53 1.90
5828 6351 2.798148 AAAGACGACCGGGTGGATGC 62.798 60.000 16.56 4.96 39.21 3.91
5948 6471 2.740826 CGTGGGCGTCCGTTCATT 60.741 61.111 0.00 0.00 35.24 2.57
5949 6472 2.322081 CGTGGGCGTCCGTTCATTT 61.322 57.895 0.00 0.00 35.24 2.32
6004 6527 1.982073 CTGAAAATGGGTCGAGCCGC 61.982 60.000 27.33 14.58 38.44 6.53
6072 6596 1.228124 TTCTGTCCGTTTGGGCCAG 60.228 57.895 6.23 0.00 40.01 4.85
6196 6720 5.129815 TCGGTAATTAGGGCTGTTTGATACT 59.870 40.000 0.00 0.00 0.00 2.12
6249 6989 2.164827 GAGGAATGCATGCACATGAACA 59.835 45.455 25.37 0.00 41.20 3.18
6315 7056 7.133891 ACCTCAAGAATTTCGATTTACTGTG 57.866 36.000 0.00 0.00 0.00 3.66
6517 7261 7.448420 TGATGTTTATTTTCCAATTTCTGCCA 58.552 30.769 0.00 0.00 0.00 4.92
6536 7280 2.208431 CATCCAGAATTCTCGGACAGC 58.792 52.381 21.52 0.00 0.00 4.40
6893 7646 1.200948 GGCTGCCAGATTTGACTCAAC 59.799 52.381 15.17 0.00 0.00 3.18
6916 7669 8.914654 CAACATGTTCATATTTACCTTTGTGTG 58.085 33.333 8.48 0.00 0.00 3.82
6919 7672 8.514594 CATGTTCATATTTACCTTTGTGTGTCT 58.485 33.333 0.00 0.00 0.00 3.41
6921 7674 7.717436 TGTTCATATTTACCTTTGTGTGTCTCA 59.283 33.333 0.00 0.00 0.00 3.27
6924 7677 7.602644 TCATATTTACCTTTGTGTGTCTCACTC 59.397 37.037 6.60 0.00 46.27 3.51
6946 7699 9.653287 CACTCTATGATTCCACTAAAACAAGTA 57.347 33.333 0.00 0.00 0.00 2.24
6947 7700 9.654663 ACTCTATGATTCCACTAAAACAAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
7075 7828 4.098501 CCCTCAGCATCCTCCATTAAAAAC 59.901 45.833 0.00 0.00 0.00 2.43
7099 7868 8.324191 ACAAGGTTATTCAGATTGAGGATCTA 57.676 34.615 0.00 0.00 43.32 1.98
7288 8060 5.438833 TGGCTCATTCATGTTGATGTATGA 58.561 37.500 0.00 0.00 41.52 2.15
7363 8222 4.202182 CCATCAGGATTAAGGGCATGTTTG 60.202 45.833 0.00 0.00 36.89 2.93
7378 8237 1.449778 TTTGTTCGCCGACCACACA 60.450 52.632 0.00 0.00 0.00 3.72
7399 8259 4.223477 ACATTGCAATGCCAGACCTTATTT 59.777 37.500 33.94 11.31 40.04 1.40
7408 8268 2.756760 CCAGACCTTATTTGCAGCATGT 59.243 45.455 0.00 0.00 39.31 3.21
7504 8370 9.616156 TGTACAAGTTTGTTGGAGTATTAGAAA 57.384 29.630 2.46 0.00 42.35 2.52
7673 8540 1.798813 CTGTCAGTTTGGACGGTTAGC 59.201 52.381 0.00 0.00 40.72 3.09
7709 8576 0.609662 ACATGAAAGTTGCATGGCCC 59.390 50.000 24.78 0.00 45.62 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.597728 GAGGAGGCGGCGAGGTAG 61.598 72.222 12.98 0.00 0.00 3.18
94 95 4.821589 GAGGAGGCGGCGAGGTTG 62.822 72.222 12.98 0.00 0.00 3.77
166 167 4.821589 GAGGAGGCGGCGAGGTTG 62.822 72.222 12.98 0.00 0.00 3.77
207 208 2.111999 TTGTGAACCTGCGGGAGGAG 62.112 60.000 23.31 0.00 46.33 3.69
208 209 2.144078 TTGTGAACCTGCGGGAGGA 61.144 57.895 23.31 0.00 46.33 3.71
210 211 2.317609 CGTTGTGAACCTGCGGGAG 61.318 63.158 21.41 0.00 36.25 4.30
211 212 2.280524 CGTTGTGAACCTGCGGGA 60.281 61.111 21.41 0.00 36.25 5.14
212 213 2.590575 ACGTTGTGAACCTGCGGG 60.591 61.111 11.02 11.02 38.88 6.13
213 214 2.631428 CACGTTGTGAACCTGCGG 59.369 61.111 0.00 0.00 35.23 5.69
214 215 2.177580 ACCACGTTGTGAACCTGCG 61.178 57.895 0.00 0.00 35.23 5.18
215 216 1.355210 CACCACGTTGTGAACCTGC 59.645 57.895 14.27 0.00 38.55 4.85
216 217 1.355210 GCACCACGTTGTGAACCTG 59.645 57.895 22.76 0.00 38.55 4.00
217 218 1.822186 GGCACCACGTTGTGAACCT 60.822 57.895 22.76 0.00 38.55 3.50
218 219 2.719354 GGCACCACGTTGTGAACC 59.281 61.111 22.76 11.67 38.55 3.62
278 279 2.668212 TTTCGGCGGTTGGAGCAG 60.668 61.111 7.21 0.00 36.08 4.24
279 280 2.668212 CTTTCGGCGGTTGGAGCA 60.668 61.111 7.21 0.00 36.08 4.26
280 281 3.431725 CCTTTCGGCGGTTGGAGC 61.432 66.667 7.21 0.00 0.00 4.70
296 297 2.967615 GATTACAGCGGCGAGGCC 60.968 66.667 12.98 0.00 46.75 5.19
297 298 3.330853 CGATTACAGCGGCGAGGC 61.331 66.667 12.98 0.00 0.00 4.70
298 299 3.330853 GCGATTACAGCGGCGAGG 61.331 66.667 12.98 3.36 0.00 4.63
299 300 3.330853 GGCGATTACAGCGGCGAG 61.331 66.667 12.98 4.29 44.17 5.03
303 304 1.594293 ATTCCGGCGATTACAGCGG 60.594 57.895 9.30 0.00 35.00 5.52
304 305 0.874175 TCATTCCGGCGATTACAGCG 60.874 55.000 9.30 0.00 35.00 5.18
305 306 1.512926 ATCATTCCGGCGATTACAGC 58.487 50.000 9.30 0.00 0.00 4.40
306 307 3.679980 CCTTATCATTCCGGCGATTACAG 59.320 47.826 9.30 0.00 0.00 2.74
307 308 3.070446 ACCTTATCATTCCGGCGATTACA 59.930 43.478 9.30 0.00 0.00 2.41
308 309 3.432252 CACCTTATCATTCCGGCGATTAC 59.568 47.826 9.30 0.00 0.00 1.89
309 310 3.322541 TCACCTTATCATTCCGGCGATTA 59.677 43.478 9.30 0.00 0.00 1.75
310 311 2.104111 TCACCTTATCATTCCGGCGATT 59.896 45.455 9.30 0.00 0.00 3.34
311 312 1.691976 TCACCTTATCATTCCGGCGAT 59.308 47.619 9.30 0.82 0.00 4.58
312 313 1.068588 CTCACCTTATCATTCCGGCGA 59.931 52.381 9.30 0.00 0.00 5.54
313 314 1.502231 CTCACCTTATCATTCCGGCG 58.498 55.000 0.00 0.00 0.00 6.46
314 315 1.543429 CCCTCACCTTATCATTCCGGC 60.543 57.143 0.00 0.00 0.00 6.13
315 316 1.072331 CCCCTCACCTTATCATTCCGG 59.928 57.143 0.00 0.00 0.00 5.14
316 317 2.047061 TCCCCTCACCTTATCATTCCG 58.953 52.381 0.00 0.00 0.00 4.30
317 318 4.846940 AGTATCCCCTCACCTTATCATTCC 59.153 45.833 0.00 0.00 0.00 3.01
318 319 5.336849 CGAGTATCCCCTCACCTTATCATTC 60.337 48.000 0.00 0.00 0.00 2.67
319 320 4.528596 CGAGTATCCCCTCACCTTATCATT 59.471 45.833 0.00 0.00 0.00 2.57
320 321 4.090090 CGAGTATCCCCTCACCTTATCAT 58.910 47.826 0.00 0.00 0.00 2.45
321 322 3.497332 CGAGTATCCCCTCACCTTATCA 58.503 50.000 0.00 0.00 0.00 2.15
322 323 2.826725 CCGAGTATCCCCTCACCTTATC 59.173 54.545 0.00 0.00 0.00 1.75
323 324 2.492940 CCCGAGTATCCCCTCACCTTAT 60.493 54.545 0.00 0.00 0.00 1.73
324 325 1.133262 CCCGAGTATCCCCTCACCTTA 60.133 57.143 0.00 0.00 0.00 2.69
325 326 0.398664 CCCGAGTATCCCCTCACCTT 60.399 60.000 0.00 0.00 0.00 3.50
326 327 1.233369 CCCGAGTATCCCCTCACCT 59.767 63.158 0.00 0.00 0.00 4.00
327 328 1.837499 CCCCGAGTATCCCCTCACC 60.837 68.421 0.00 0.00 0.00 4.02
328 329 1.837499 CCCCCGAGTATCCCCTCAC 60.837 68.421 0.00 0.00 0.00 3.51
329 330 2.016315 TCCCCCGAGTATCCCCTCA 61.016 63.158 0.00 0.00 0.00 3.86
330 331 1.228925 CTCCCCCGAGTATCCCCTC 60.229 68.421 0.00 0.00 0.00 4.30
331 332 2.944271 CTCCCCCGAGTATCCCCT 59.056 66.667 0.00 0.00 0.00 4.79
339 340 3.077556 CTCACCCACTCCCCCGAG 61.078 72.222 0.00 0.00 42.32 4.63
345 346 4.394712 CACCGGCTCACCCACTCC 62.395 72.222 0.00 0.00 0.00 3.85
346 347 2.185310 AATCACCGGCTCACCCACTC 62.185 60.000 0.00 0.00 0.00 3.51
347 348 2.224159 AATCACCGGCTCACCCACT 61.224 57.895 0.00 0.00 0.00 4.00
348 349 2.040544 CAATCACCGGCTCACCCAC 61.041 63.158 0.00 0.00 0.00 4.61
349 350 2.350895 CAATCACCGGCTCACCCA 59.649 61.111 0.00 0.00 0.00 4.51
350 351 1.745489 GACAATCACCGGCTCACCC 60.745 63.158 0.00 0.00 0.00 4.61
351 352 2.100631 CGACAATCACCGGCTCACC 61.101 63.158 0.00 0.00 0.00 4.02
352 353 2.100631 CCGACAATCACCGGCTCAC 61.101 63.158 0.00 0.00 39.22 3.51
353 354 2.264480 CCGACAATCACCGGCTCA 59.736 61.111 0.00 0.00 39.22 4.26
354 355 2.511600 CCCGACAATCACCGGCTC 60.512 66.667 0.00 0.00 44.07 4.70
355 356 4.096003 CCCCGACAATCACCGGCT 62.096 66.667 0.00 0.00 44.07 5.52
356 357 3.615509 TTCCCCGACAATCACCGGC 62.616 63.158 0.00 0.00 44.07 6.13
357 358 1.003112 TTTCCCCGACAATCACCGG 60.003 57.895 0.00 0.00 44.94 5.28
358 359 1.024579 CCTTTCCCCGACAATCACCG 61.025 60.000 0.00 0.00 0.00 4.94
359 360 0.326927 TCCTTTCCCCGACAATCACC 59.673 55.000 0.00 0.00 0.00 4.02
360 361 2.420058 ATCCTTTCCCCGACAATCAC 57.580 50.000 0.00 0.00 0.00 3.06
361 362 3.118038 CCTTATCCTTTCCCCGACAATCA 60.118 47.826 0.00 0.00 0.00 2.57
362 363 3.118000 ACCTTATCCTTTCCCCGACAATC 60.118 47.826 0.00 0.00 0.00 2.67
363 364 2.850568 ACCTTATCCTTTCCCCGACAAT 59.149 45.455 0.00 0.00 0.00 2.71
364 365 2.271777 ACCTTATCCTTTCCCCGACAA 58.728 47.619 0.00 0.00 0.00 3.18
365 366 1.961133 ACCTTATCCTTTCCCCGACA 58.039 50.000 0.00 0.00 0.00 4.35
366 367 2.223900 CGTACCTTATCCTTTCCCCGAC 60.224 54.545 0.00 0.00 0.00 4.79
367 368 2.034124 CGTACCTTATCCTTTCCCCGA 58.966 52.381 0.00 0.00 0.00 5.14
368 369 1.539712 GCGTACCTTATCCTTTCCCCG 60.540 57.143 0.00 0.00 0.00 5.73
369 370 1.767088 AGCGTACCTTATCCTTTCCCC 59.233 52.381 0.00 0.00 0.00 4.81
370 371 3.640498 ACTAGCGTACCTTATCCTTTCCC 59.360 47.826 0.00 0.00 0.00 3.97
371 372 4.933505 ACTAGCGTACCTTATCCTTTCC 57.066 45.455 0.00 0.00 0.00 3.13
372 373 8.707938 TTTTTACTAGCGTACCTTATCCTTTC 57.292 34.615 0.00 0.00 0.00 2.62
395 396 2.803852 GCAAATTCCCCCGAACGTTTTT 60.804 45.455 0.46 0.00 0.00 1.94
396 397 1.269883 GCAAATTCCCCCGAACGTTTT 60.270 47.619 0.46 0.00 0.00 2.43
397 398 0.315886 GCAAATTCCCCCGAACGTTT 59.684 50.000 0.46 0.00 0.00 3.60
398 399 1.529152 GGCAAATTCCCCCGAACGTT 61.529 55.000 0.00 0.00 0.00 3.99
399 400 1.974875 GGCAAATTCCCCCGAACGT 60.975 57.895 0.00 0.00 0.00 3.99
400 401 1.248101 AAGGCAAATTCCCCCGAACG 61.248 55.000 0.00 0.00 0.00 3.95
401 402 0.530744 GAAGGCAAATTCCCCCGAAC 59.469 55.000 0.00 0.00 0.00 3.95
402 403 0.113385 TGAAGGCAAATTCCCCCGAA 59.887 50.000 0.00 0.00 0.00 4.30
403 404 0.113385 TTGAAGGCAAATTCCCCCGA 59.887 50.000 0.00 0.00 0.00 5.14
404 405 0.246360 GTTGAAGGCAAATTCCCCCG 59.754 55.000 0.00 0.00 35.42 5.73
405 406 0.613260 GGTTGAAGGCAAATTCCCCC 59.387 55.000 0.00 0.00 35.42 5.40
406 407 0.613260 GGGTTGAAGGCAAATTCCCC 59.387 55.000 0.00 0.00 33.72 4.81
407 408 0.246360 CGGGTTGAAGGCAAATTCCC 59.754 55.000 0.00 0.00 35.51 3.97
408 409 1.253100 TCGGGTTGAAGGCAAATTCC 58.747 50.000 0.00 0.00 35.42 3.01
409 410 2.672714 GTTCGGGTTGAAGGCAAATTC 58.327 47.619 0.00 0.00 37.23 2.17
410 411 1.000717 CGTTCGGGTTGAAGGCAAATT 60.001 47.619 0.00 0.00 37.23 1.82
411 412 0.596082 CGTTCGGGTTGAAGGCAAAT 59.404 50.000 0.00 0.00 37.23 2.32
412 413 2.026522 CGTTCGGGTTGAAGGCAAA 58.973 52.632 0.00 0.00 37.23 3.68
413 414 3.739167 CGTTCGGGTTGAAGGCAA 58.261 55.556 0.00 0.00 37.23 4.52
416 417 2.663852 ACGCGTTCGGGTTGAAGG 60.664 61.111 5.58 0.00 43.64 3.46
417 418 2.664436 GGACGCGTTCGGGTTGAAG 61.664 63.158 15.53 0.00 37.23 3.02
418 419 2.662527 GGACGCGTTCGGGTTGAA 60.663 61.111 15.53 0.00 40.69 2.69
419 420 4.668118 GGGACGCGTTCGGGTTGA 62.668 66.667 15.53 0.00 40.69 3.18
420 421 4.675029 AGGGACGCGTTCGGGTTG 62.675 66.667 15.53 0.00 40.69 3.77
421 422 4.675029 CAGGGACGCGTTCGGGTT 62.675 66.667 15.53 0.00 40.69 4.11
425 426 4.143333 ATCCCAGGGACGCGTTCG 62.143 66.667 15.53 0.00 42.43 3.95
426 427 2.511600 CATCCCAGGGACGCGTTC 60.512 66.667 15.53 12.55 32.98 3.95
427 428 3.000819 TCATCCCAGGGACGCGTT 61.001 61.111 15.53 0.00 32.98 4.84
428 429 3.771160 GTCATCCCAGGGACGCGT 61.771 66.667 13.85 13.85 32.98 6.01
432 433 2.584608 CCACGTCATCCCAGGGAC 59.415 66.667 11.70 0.00 32.98 4.46
433 434 3.399181 GCCACGTCATCCCAGGGA 61.399 66.667 11.90 11.90 35.55 4.20
434 435 2.556840 ATTGCCACGTCATCCCAGGG 62.557 60.000 0.00 0.00 0.00 4.45
435 436 1.077501 ATTGCCACGTCATCCCAGG 60.078 57.895 0.00 0.00 0.00 4.45
436 437 1.378882 CCATTGCCACGTCATCCCAG 61.379 60.000 0.00 0.00 0.00 4.45
437 438 1.378382 CCATTGCCACGTCATCCCA 60.378 57.895 0.00 0.00 0.00 4.37
438 439 2.120909 CCCATTGCCACGTCATCCC 61.121 63.158 0.00 0.00 0.00 3.85
439 440 0.466189 ATCCCATTGCCACGTCATCC 60.466 55.000 0.00 0.00 0.00 3.51
440 441 1.873591 GTATCCCATTGCCACGTCATC 59.126 52.381 0.00 0.00 0.00 2.92
441 442 1.476833 GGTATCCCATTGCCACGTCAT 60.477 52.381 0.00 0.00 0.00 3.06
442 443 0.107410 GGTATCCCATTGCCACGTCA 60.107 55.000 0.00 0.00 0.00 4.35
443 444 0.107410 TGGTATCCCATTGCCACGTC 60.107 55.000 0.00 0.00 35.17 4.34
444 445 1.995274 TGGTATCCCATTGCCACGT 59.005 52.632 0.00 0.00 35.17 4.49
445 446 4.975132 TGGTATCCCATTGCCACG 57.025 55.556 0.00 0.00 35.17 4.94
454 455 3.380004 TGCACGAATTTTGATGGTATCCC 59.620 43.478 0.00 0.00 0.00 3.85
455 456 4.630894 TGCACGAATTTTGATGGTATCC 57.369 40.909 0.00 0.00 0.00 2.59
456 457 4.495472 CGTTGCACGAATTTTGATGGTATC 59.505 41.667 3.04 0.00 46.05 2.24
457 458 4.411327 CGTTGCACGAATTTTGATGGTAT 58.589 39.130 3.04 0.00 46.05 2.73
458 459 3.365465 CCGTTGCACGAATTTTGATGGTA 60.365 43.478 9.75 0.00 46.05 3.25
459 460 2.606795 CCGTTGCACGAATTTTGATGGT 60.607 45.455 9.75 0.00 46.05 3.55
460 461 1.984990 CCGTTGCACGAATTTTGATGG 59.015 47.619 9.75 0.00 46.05 3.51
461 462 1.386412 GCCGTTGCACGAATTTTGATG 59.614 47.619 9.75 0.00 46.05 3.07
462 463 1.269448 AGCCGTTGCACGAATTTTGAT 59.731 42.857 9.75 0.00 46.05 2.57
463 464 0.665835 AGCCGTTGCACGAATTTTGA 59.334 45.000 9.75 0.00 46.05 2.69
464 465 1.976045 GTAGCCGTTGCACGAATTTTG 59.024 47.619 9.75 0.00 46.05 2.44
465 466 1.604755 TGTAGCCGTTGCACGAATTTT 59.395 42.857 9.75 0.00 46.05 1.82
466 467 1.069500 GTGTAGCCGTTGCACGAATTT 60.069 47.619 9.75 0.00 46.05 1.82
467 468 0.515564 GTGTAGCCGTTGCACGAATT 59.484 50.000 9.75 0.00 46.05 2.17
468 469 2.159181 GTGTAGCCGTTGCACGAAT 58.841 52.632 9.75 1.89 46.05 3.34
469 470 3.632700 GTGTAGCCGTTGCACGAA 58.367 55.556 9.75 0.00 46.05 3.85
475 476 3.033764 ACGTGCGTGTAGCCGTTG 61.034 61.111 0.00 0.00 45.55 4.10
481 482 2.430244 AGCCGAACGTGCGTGTAG 60.430 61.111 16.18 0.00 0.00 2.74
482 483 2.731721 CAGCCGAACGTGCGTGTA 60.732 61.111 16.18 0.00 0.00 2.90
488 489 2.954753 GAACCTGCAGCCGAACGTG 61.955 63.158 8.66 0.00 0.00 4.49
489 490 2.665185 GAACCTGCAGCCGAACGT 60.665 61.111 8.66 0.00 0.00 3.99
490 491 1.781025 TTTGAACCTGCAGCCGAACG 61.781 55.000 8.66 0.00 0.00 3.95
491 492 0.383949 TTTTGAACCTGCAGCCGAAC 59.616 50.000 8.66 0.00 0.00 3.95
492 493 1.107114 TTTTTGAACCTGCAGCCGAA 58.893 45.000 8.66 2.97 0.00 4.30
493 494 2.800516 TTTTTGAACCTGCAGCCGA 58.199 47.368 8.66 0.00 0.00 5.54
516 517 3.242316 GGAACGATAACTGCCGAACATTC 60.242 47.826 0.00 0.00 0.00 2.67
517 518 2.676342 GGAACGATAACTGCCGAACATT 59.324 45.455 0.00 0.00 0.00 2.71
518 519 2.277084 GGAACGATAACTGCCGAACAT 58.723 47.619 0.00 0.00 0.00 2.71
519 520 1.673626 GGGAACGATAACTGCCGAACA 60.674 52.381 0.00 0.00 0.00 3.18
520 521 1.004595 GGGAACGATAACTGCCGAAC 58.995 55.000 0.00 0.00 0.00 3.95
521 522 3.446507 GGGAACGATAACTGCCGAA 57.553 52.632 0.00 0.00 0.00 4.30
534 535 3.507786 GGCATCAAATGTTTACGGGAAC 58.492 45.455 0.00 0.00 0.00 3.62
535 536 2.162608 CGGCATCAAATGTTTACGGGAA 59.837 45.455 0.00 0.00 0.00 3.97
554 555 1.262950 TGCAGTTCATCAAACGAACGG 59.737 47.619 0.00 0.00 45.93 4.44
560 561 4.479619 GACTCCAATGCAGTTCATCAAAC 58.520 43.478 0.00 0.00 38.21 2.93
602 604 4.669197 CGATTTAGTTTTCCTTGCAGTCCG 60.669 45.833 0.00 0.00 0.00 4.79
603 605 4.454504 TCGATTTAGTTTTCCTTGCAGTCC 59.545 41.667 0.00 0.00 0.00 3.85
605 607 5.063880 ACTCGATTTAGTTTTCCTTGCAGT 58.936 37.500 0.00 0.00 0.00 4.40
606 608 5.390991 GGACTCGATTTAGTTTTCCTTGCAG 60.391 44.000 0.00 0.00 0.00 4.41
607 609 4.454504 GGACTCGATTTAGTTTTCCTTGCA 59.545 41.667 0.00 0.00 0.00 4.08
608 610 4.435651 CGGACTCGATTTAGTTTTCCTTGC 60.436 45.833 0.00 0.00 39.00 4.01
609 611 4.092968 CCGGACTCGATTTAGTTTTCCTTG 59.907 45.833 0.00 0.00 39.00 3.61
751 770 1.668151 GCTGTGGGTGAGTTCGGAC 60.668 63.158 0.00 0.00 0.00 4.79
779 798 1.743321 CTCCGTCTGGGATCTGCCTC 61.743 65.000 0.00 0.00 46.04 4.70
964 983 0.951558 GGCGCGATGATTTGGGTATT 59.048 50.000 12.10 0.00 0.00 1.89
965 984 0.889186 GGGCGCGATGATTTGGGTAT 60.889 55.000 12.10 0.00 0.00 2.73
966 985 1.525077 GGGCGCGATGATTTGGGTA 60.525 57.895 12.10 0.00 0.00 3.69
967 986 2.828549 GGGCGCGATGATTTGGGT 60.829 61.111 12.10 0.00 0.00 4.51
1674 1693 1.371635 GCCACGAAACGCAGCAAAT 60.372 52.632 0.00 0.00 0.00 2.32
1848 1867 3.983988 CGAAGTCCGGATCATGAATAGTG 59.016 47.826 7.81 0.00 33.91 2.74
1884 1903 2.359230 ACCTCGCCTTCTGCAAGC 60.359 61.111 0.00 0.00 41.33 4.01
2096 2115 1.534163 GACCAGTGGGCGAAAACTTAC 59.466 52.381 15.21 0.00 37.90 2.34
2139 2158 0.544223 GGGAAAGAGGGCCTTCTCTC 59.456 60.000 19.07 14.19 42.75 3.20
2256 2275 3.135530 ACATGGACTCCTCAATTCTAGGC 59.864 47.826 0.00 0.00 33.84 3.93
2259 2278 5.026121 ACTGACATGGACTCCTCAATTCTA 58.974 41.667 0.00 0.00 0.00 2.10
2346 2365 2.628178 TGTAGTTCTCAGATATGGCCCG 59.372 50.000 0.00 0.00 0.00 6.13
2768 2794 4.399004 AGAATCAATCCTCTCCAACTCG 57.601 45.455 0.00 0.00 0.00 4.18
3036 3073 4.805719 GCAGTCCTTGTCAAAAGAAAAAGG 59.194 41.667 0.00 0.00 39.02 3.11
3204 3242 6.104146 AGACCTCTTCTTGGAACTTAGAAC 57.896 41.667 0.00 0.00 0.00 3.01
3214 3252 2.841442 ACGGAAAGACCTCTTCTTGG 57.159 50.000 0.00 0.00 44.41 3.61
3228 3266 2.621998 GCTGCTAGTGTCCTATACGGAA 59.378 50.000 0.00 0.00 45.32 4.30
3298 3336 9.678941 CTAACAAACTCAAAATCTTCCTTAACC 57.321 33.333 0.00 0.00 0.00 2.85
3319 3357 4.469586 TGGAGACCTATGCATTGACTAACA 59.530 41.667 3.54 6.35 0.00 2.41
3334 3372 6.069381 ACTGGAATTAGCTTAATTGGAGACCT 60.069 38.462 0.00 0.00 38.42 3.85
3538 3576 2.426024 CGAAGGACAAAGATCGAGGGTA 59.574 50.000 0.00 0.00 37.48 3.69
3539 3577 1.204941 CGAAGGACAAAGATCGAGGGT 59.795 52.381 0.00 0.00 37.48 4.34
3540 3578 1.927895 CGAAGGACAAAGATCGAGGG 58.072 55.000 0.00 0.00 37.48 4.30
3600 3746 1.006758 TCCACCAATAGGACCTCGAGT 59.993 52.381 12.31 0.00 38.69 4.18
3601 3747 1.776662 TCCACCAATAGGACCTCGAG 58.223 55.000 5.13 5.13 38.69 4.04
3602 3748 2.471815 ATCCACCAATAGGACCTCGA 57.528 50.000 0.00 0.00 38.13 4.04
3603 3749 3.944055 CTATCCACCAATAGGACCTCG 57.056 52.381 0.00 0.00 38.13 4.63
3618 3772 4.718961 ACATGTTAGGTTGCATCCTATCC 58.281 43.478 21.53 15.87 39.46 2.59
3653 3822 8.653191 TCAAACCAAGGAAGTAGACATAAGTAA 58.347 33.333 0.00 0.00 0.00 2.24
3787 3957 3.802948 ACGACATTTAGCCCTACAGAG 57.197 47.619 0.00 0.00 0.00 3.35
3840 4016 2.174363 TGTGGCAAGTCTCAGTGATG 57.826 50.000 0.00 0.00 0.00 3.07
3861 4037 9.975218 AAACCAGTCATGTTCCTTTTAGTATAT 57.025 29.630 0.00 0.00 0.00 0.86
3934 4141 7.831753 TCGTTGGATTTTATTGCAGGAAATTA 58.168 30.769 5.76 0.00 0.00 1.40
3957 4164 1.534175 CGCTACAAAGTAGGAGCCTCG 60.534 57.143 6.34 0.00 0.00 4.63
4000 4207 7.247728 TGTAAGCTAATTAAATGGCAAACTCG 58.752 34.615 1.47 0.00 0.00 4.18
4123 4330 4.008330 TGTGGTTCGTTCAACTAAAACCA 58.992 39.130 12.55 12.55 45.25 3.67
4195 4402 7.397192 ACATTTAACTCTATTCCATTGCCACTT 59.603 33.333 0.00 0.00 0.00 3.16
4240 4447 1.977854 TCCCAGTGCAGTCATGTTACT 59.022 47.619 0.00 0.00 0.00 2.24
4306 4513 3.859411 TCAAAATCCAATGGCGTTACC 57.141 42.857 0.00 0.00 39.84 2.85
4313 4520 8.774890 TTGTTCATTACATCAAAATCCAATGG 57.225 30.769 0.00 0.00 36.44 3.16
4333 4540 5.965922 AGTTGGCCTAATGCTTTATTGTTC 58.034 37.500 3.32 0.00 40.92 3.18
4361 4568 2.972505 CCGATTTGGGATCGCCGG 60.973 66.667 7.38 8.89 39.95 6.13
4362 4569 2.108157 TCCGATTTGGGATCGCCG 59.892 61.111 7.38 3.37 39.95 6.46
4366 4573 2.987752 GGACGTCCGATTTGGGATC 58.012 57.895 20.85 0.00 38.61 3.36
4401 4608 0.902531 TTTTGCCAACCCAAACGGAA 59.097 45.000 0.00 0.00 34.68 4.30
4405 4612 0.175989 TCCGTTTTGCCAACCCAAAC 59.824 50.000 0.00 0.00 34.68 2.93
4409 4616 1.066752 GTGTCCGTTTTGCCAACCC 59.933 57.895 0.00 0.00 0.00 4.11
4413 4620 2.824489 TGCGTGTCCGTTTTGCCA 60.824 55.556 0.00 0.00 36.15 4.92
4667 4891 2.100631 CACGGGCGACAAGGATGAC 61.101 63.158 0.00 0.00 0.00 3.06
4740 4993 4.749310 CGCCTCTCGCAGCCAACT 62.749 66.667 0.00 0.00 37.30 3.16
4865 5118 4.021925 GGTCGGCCAGTCCTGCTT 62.022 66.667 0.00 0.00 34.09 3.91
4951 5213 3.807538 GAGCTCGACGCCGTGGTA 61.808 66.667 0.00 0.00 39.61 3.25
5032 5300 4.651008 GTCCGCACCCACGACGAA 62.651 66.667 0.00 0.00 34.06 3.85
5067 5338 0.908198 GGAGGTGAAGCTCATGAGGT 59.092 55.000 21.55 21.55 41.53 3.85
5218 5490 1.159713 CGTGCTCAAAGCCTGTCACA 61.160 55.000 0.00 0.00 41.51 3.58
5222 5494 1.598130 GGTCGTGCTCAAAGCCTGT 60.598 57.895 0.00 0.00 41.51 4.00
5224 5496 2.357517 CGGTCGTGCTCAAAGCCT 60.358 61.111 0.00 0.00 41.51 4.58
5229 5654 2.203084 TTTGCCGGTCGTGCTCAA 60.203 55.556 1.90 0.00 0.00 3.02
5261 5686 1.133575 TCCCGGATGAGAACGACCTAT 60.134 52.381 0.73 0.00 0.00 2.57
5383 5808 2.577059 GATCCCGTTGAGCGACCA 59.423 61.111 0.00 0.00 44.77 4.02
5434 5859 4.179298 GACGTATACCTCCCAAACAACTC 58.821 47.826 0.00 0.00 0.00 3.01
5473 5898 0.694444 AGGTATTGGGAGACGGGCAT 60.694 55.000 0.00 0.00 0.00 4.40
5577 6050 4.320456 CCGCAGCCACTCCACACT 62.320 66.667 0.00 0.00 0.00 3.55
5579 6052 3.872603 AACCGCAGCCACTCCACA 61.873 61.111 0.00 0.00 0.00 4.17
5686 6167 0.616111 GCTCTTCCACCTCCTCTCCA 60.616 60.000 0.00 0.00 0.00 3.86
5756 6266 1.622811 CAGACTTCCACTTCCAGAGCT 59.377 52.381 0.00 0.00 0.00 4.09
5828 6351 1.961277 GACCCACTTGCCAGTCACG 60.961 63.158 0.00 0.00 0.00 4.35
6004 6527 1.846541 AAATTTGTCCGTTTGGCGTG 58.153 45.000 0.00 0.00 39.32 5.34
6196 6720 8.783660 ATCAAATACAGGAGAATGGTAGACTA 57.216 34.615 0.00 0.00 0.00 2.59
6315 7056 3.327757 TGAACTATATCATGGGGGCTGTC 59.672 47.826 0.00 0.00 0.00 3.51
6385 7126 7.675962 ATGCTGAAACATTTTAACATGCAAT 57.324 28.000 1.43 0.00 0.00 3.56
6517 7261 2.114616 AGCTGTCCGAGAATTCTGGAT 58.885 47.619 21.80 9.53 33.63 3.41
6893 7646 8.514594 AGACACACAAAGGTAAATATGAACATG 58.485 33.333 0.00 0.00 0.00 3.21
6916 7669 8.035394 TGTTTTAGTGGAATCATAGAGTGAGAC 58.965 37.037 0.00 0.00 40.92 3.36
6919 7672 8.375506 ACTTGTTTTAGTGGAATCATAGAGTGA 58.624 33.333 0.00 0.00 42.06 3.41
6921 7674 9.654663 GTACTTGTTTTAGTGGAATCATAGAGT 57.345 33.333 0.00 0.00 0.00 3.24
6924 7677 8.786826 TGGTACTTGTTTTAGTGGAATCATAG 57.213 34.615 0.00 0.00 0.00 2.23
7075 7828 9.618890 TTTAGATCCTCAATCTGAATAACCTTG 57.381 33.333 0.00 0.00 44.69 3.61
7099 7868 5.393866 ACCAACCATTAACATCACTCCTTT 58.606 37.500 0.00 0.00 0.00 3.11
7363 8222 1.206578 CAATGTGTGGTCGGCGAAC 59.793 57.895 19.86 19.86 0.00 3.95
7378 8237 4.761975 CAAATAAGGTCTGGCATTGCAAT 58.238 39.130 5.99 5.99 0.00 3.56
7399 8259 3.321396 TCCATTGAAGAAAACATGCTGCA 59.679 39.130 4.13 4.13 0.00 4.41
7437 8297 0.527817 GGATCGGTAACACCAGCTCG 60.528 60.000 0.00 0.00 38.47 5.03
7464 8330 9.593134 ACAAACTTGTACAATATGCAAAAAGAA 57.407 25.926 9.13 0.00 40.16 2.52
7465 8331 9.593134 AACAAACTTGTACAATATGCAAAAAGA 57.407 25.926 9.13 0.00 41.31 2.52
7466 8332 9.635632 CAACAAACTTGTACAATATGCAAAAAG 57.364 29.630 9.13 0.00 41.31 2.27
7467 8333 8.607459 CCAACAAACTTGTACAATATGCAAAAA 58.393 29.630 9.13 0.00 41.31 1.94
7468 8334 7.981789 TCCAACAAACTTGTACAATATGCAAAA 59.018 29.630 9.13 0.00 41.31 2.44
7673 8540 4.575885 TCATGTTAAAAGGGTCGGAGAAG 58.424 43.478 0.00 0.00 39.69 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.