Multiple sequence alignment - TraesCS4D01G217000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G217000 chr4D 100.000 5683 0 0 1 5683 371788799 371794481 0.000000e+00 10495.0
1 TraesCS4D01G217000 chr4B 91.538 2009 78 27 186 2172 456593682 456595620 0.000000e+00 2684.0
2 TraesCS4D01G217000 chr4B 91.261 1888 107 31 3818 5683 456597190 456599041 0.000000e+00 2519.0
3 TraesCS4D01G217000 chr4B 93.520 1034 50 6 2328 3356 456595708 456596729 0.000000e+00 1522.0
4 TraesCS4D01G217000 chr4B 95.455 418 15 3 3321 3738 456596780 456597193 0.000000e+00 664.0
5 TraesCS4D01G217000 chr4B 86.826 167 21 1 1 167 456583215 456583380 9.720000e-43 185.0
6 TraesCS4D01G217000 chr4B 97.436 39 1 0 3388 3426 456596731 456596769 3.670000e-07 67.6
7 TraesCS4D01G217000 chr4B 97.143 35 1 0 2168 2202 456595660 456595694 6.150000e-05 60.2
8 TraesCS4D01G217000 chr4A 93.170 1713 62 16 496 2167 92221343 92219645 0.000000e+00 2464.0
9 TraesCS4D01G217000 chr4A 95.260 1308 44 7 3818 5117 92218194 92216897 0.000000e+00 2056.0
10 TraesCS4D01G217000 chr4A 96.855 922 28 1 2294 3215 92219570 92218650 0.000000e+00 1541.0
11 TraesCS4D01G217000 chr4A 98.065 465 9 0 3274 3738 92218655 92218191 0.000000e+00 809.0
12 TraesCS4D01G217000 chr4A 89.306 533 24 7 5142 5673 92216901 92216401 6.210000e-179 638.0
13 TraesCS4D01G217000 chr4A 91.273 275 19 3 170 440 92221635 92221362 2.500000e-98 370.0
14 TraesCS4D01G217000 chr4A 89.655 116 9 3 3727 3840 603715570 603715456 1.650000e-30 145.0
15 TraesCS4D01G217000 chr1B 86.364 198 22 4 4120 4313 634279821 634280017 1.600000e-50 211.0
16 TraesCS4D01G217000 chr1B 98.889 90 1 0 3734 3823 47517343 47517432 1.640000e-35 161.0
17 TraesCS4D01G217000 chr1B 93.478 46 3 0 5158 5203 331218574 331218529 1.020000e-07 69.4
18 TraesCS4D01G217000 chr1B 93.333 45 2 1 5163 5206 151072485 151072441 1.320000e-06 65.8
19 TraesCS4D01G217000 chr2A 88.608 158 17 1 16 172 11974294 11974451 2.090000e-44 191.0
20 TraesCS4D01G217000 chr2A 95.876 97 3 1 3726 3821 88278026 88278122 7.620000e-34 156.0
21 TraesCS4D01G217000 chr2A 88.136 118 12 2 2201 2317 660286775 660286891 7.680000e-29 139.0
22 TraesCS4D01G217000 chr2D 88.591 149 16 1 25 172 11318933 11319081 4.520000e-41 180.0
23 TraesCS4D01G217000 chr2D 91.667 108 8 1 2193 2300 643319503 643319609 1.280000e-31 148.0
24 TraesCS4D01G217000 chr2D 91.509 106 9 0 2201 2306 445894884 445894989 4.590000e-31 147.0
25 TraesCS4D01G217000 chr2D 89.565 115 11 1 4001 4114 6750681 6750567 1.650000e-30 145.0
26 TraesCS4D01G217000 chr2D 91.262 103 9 0 2198 2300 367506397 367506499 2.130000e-29 141.0
27 TraesCS4D01G217000 chr2D 92.857 42 3 0 5163 5204 628339986 628339945 1.710000e-05 62.1
28 TraesCS4D01G217000 chr7D 96.875 96 2 1 3727 3821 195280231 195280136 5.890000e-35 159.0
29 TraesCS4D01G217000 chrUn 95.918 98 3 1 3727 3824 230602075 230602171 2.120000e-34 158.0
30 TraesCS4D01G217000 chr1A 95.833 96 4 0 3729 3824 366288305 366288210 7.620000e-34 156.0
31 TraesCS4D01G217000 chr1A 85.430 151 20 1 25 173 592134573 592134423 7.620000e-34 156.0
32 TraesCS4D01G217000 chr6D 94.175 103 2 4 3727 3828 289215133 289215034 2.740000e-33 154.0
33 TraesCS4D01G217000 chr6D 89.831 118 10 1 3706 3821 157327992 157328109 3.550000e-32 150.0
34 TraesCS4D01G217000 chr2B 90.598 117 9 2 1 116 254635900 254636015 2.740000e-33 154.0
35 TraesCS4D01G217000 chr2B 81.250 144 27 0 25 168 20667315 20667172 3.600000e-22 117.0
36 TraesCS4D01G217000 chr2B 91.304 46 4 0 5158 5203 761895273 761895228 4.750000e-06 63.9
37 TraesCS4D01G217000 chr5D 94.000 100 6 0 2198 2297 416422267 416422366 9.860000e-33 152.0
38 TraesCS4D01G217000 chr5A 91.667 108 7 2 3723 3830 547393426 547393321 1.280000e-31 148.0
39 TraesCS4D01G217000 chr5A 81.765 170 24 6 1 166 291695435 291695269 9.930000e-28 135.0
40 TraesCS4D01G217000 chr3D 90.826 109 9 1 2192 2300 71512916 71512809 1.650000e-30 145.0
41 TraesCS4D01G217000 chr3D 89.720 107 11 0 4 110 23225723 23225617 2.760000e-28 137.0
42 TraesCS4D01G217000 chr3D 91.304 46 4 0 5159 5204 40917083 40917128 4.750000e-06 63.9
43 TraesCS4D01G217000 chr7A 89.815 108 11 0 2201 2308 692780432 692780325 7.680000e-29 139.0
44 TraesCS4D01G217000 chr7A 88.393 112 11 2 2198 2307 205167864 205167753 3.570000e-27 134.0
45 TraesCS4D01G217000 chr7A 85.455 55 6 1 5163 5217 3007297 3007245 7.950000e-04 56.5
46 TraesCS4D01G217000 chr6B 89.720 107 11 0 2201 2307 518389432 518389538 2.760000e-28 137.0
47 TraesCS4D01G217000 chr3A 79.747 158 29 2 16 171 681644798 681644642 1.670000e-20 111.0
48 TraesCS4D01G217000 chr5B 87.719 57 5 2 5156 5210 437565780 437565836 1.320000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G217000 chr4D 371788799 371794481 5682 False 10495.0 10495 100.000000 1 5683 1 chr4D.!!$F1 5682
1 TraesCS4D01G217000 chr4B 456593682 456599041 5359 False 1252.8 2684 94.392167 186 5683 6 chr4B.!!$F2 5497
2 TraesCS4D01G217000 chr4A 92216401 92221635 5234 True 1313.0 2464 93.988167 170 5673 6 chr4A.!!$R2 5503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.032815 CAAATTTCGCCCGGTTGGTT 59.967 50.0 0.00 0.00 36.04 3.67 F
89 90 0.108138 CGGTTGGATGACTGTCTCCC 60.108 60.0 17.77 14.43 0.00 4.30 F
98 99 0.108615 GACTGTCTCCCACATCCGTG 60.109 60.0 0.00 0.00 43.21 4.94 F
100 101 0.108615 CTGTCTCCCACATCCGTGTC 60.109 60.0 0.00 0.00 41.93 3.67 F
102 103 0.108615 GTCTCCCACATCCGTGTCTG 60.109 60.0 0.00 0.00 41.93 3.51 F
462 471 0.324614 ATGCACTCGACATGGGTTCA 59.675 50.0 0.00 0.00 0.00 3.18 F
613 622 0.820891 AGCATCGCACCCATTCCATC 60.821 55.0 0.00 0.00 0.00 3.51 F
2223 2319 0.035439 TCCTCCGTCCCAAAATGAGC 60.035 55.0 0.00 0.00 0.00 4.26 F
2226 2322 0.672401 TCCGTCCCAAAATGAGCGTC 60.672 55.0 0.00 0.00 0.00 5.19 F
3430 3613 0.107066 TGGTGCATGCGAATGGATCT 60.107 50.0 14.09 0.00 0.00 2.75 F
3747 3930 2.226962 TTAGCAAGTACTCCCTCCGT 57.773 50.0 0.00 0.00 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1616 0.036010 AGCCTGGTTTCCTCACATCG 60.036 55.000 0.00 0.00 0.00 3.84 R
1743 1793 0.618458 CCGGGTCTCCAAAATCAGGA 59.382 55.000 0.00 0.00 0.00 3.86 R
1848 1898 3.114065 GTTTGTCGTGGATATCGAGGAC 58.886 50.000 24.99 24.99 39.06 3.85 R
2069 2122 6.454848 CGAACATAGCAAGTTGAGCTCTTAAG 60.455 42.308 16.19 0.00 42.32 1.85 R
2172 2268 4.816385 GCTAGGCATCTGTATTTTGCTACA 59.184 41.667 0.00 0.00 36.62 2.74 R
2204 2300 0.035439 GCTCATTTTGGGACGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71 R
2279 2375 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
3430 3613 0.662619 CAAAGTCCGCAAGCTTCACA 59.337 50.000 0.00 0.00 0.00 3.58 R
3662 3845 3.448686 ACAAGCGAATTCGAGACTATGG 58.551 45.455 31.01 13.31 43.02 2.74 R
4425 4614 0.675633 AGTTGCAAGAATGGGTGTGC 59.324 50.000 0.00 0.00 37.51 4.57 R
5604 5812 1.270625 TGCTTTCTACACCTGGGAACG 60.271 52.381 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.413495 TCAAAATTCGTCCGGTTTGATC 57.587 40.909 10.62 0.00 35.60 2.92
23 24 3.815962 TCAAAATTCGTCCGGTTTGATCA 59.184 39.130 10.62 0.00 35.60 2.92
24 25 4.276183 TCAAAATTCGTCCGGTTTGATCAA 59.724 37.500 3.38 3.38 35.60 2.57
25 26 4.839668 AAATTCGTCCGGTTTGATCAAA 57.160 36.364 16.91 16.91 0.00 2.69
26 27 5.385509 AAATTCGTCCGGTTTGATCAAAT 57.614 34.783 23.05 1.87 32.36 2.32
27 28 5.385509 AATTCGTCCGGTTTGATCAAATT 57.614 34.783 23.05 7.94 32.36 1.82
28 29 4.839668 TTCGTCCGGTTTGATCAAATTT 57.160 36.364 23.05 0.00 32.36 1.82
29 30 4.413495 TCGTCCGGTTTGATCAAATTTC 57.587 40.909 23.05 14.46 32.36 2.17
30 31 3.120477 TCGTCCGGTTTGATCAAATTTCG 60.120 43.478 23.05 22.92 32.36 3.46
31 32 2.914838 GTCCGGTTTGATCAAATTTCGC 59.085 45.455 23.05 10.23 32.36 4.70
32 33 2.094957 TCCGGTTTGATCAAATTTCGCC 60.095 45.455 23.05 17.18 32.36 5.54
33 34 2.258755 CGGTTTGATCAAATTTCGCCC 58.741 47.619 23.05 16.53 32.36 6.13
34 35 2.258755 GGTTTGATCAAATTTCGCCCG 58.741 47.619 23.05 0.00 32.36 6.13
35 36 2.258755 GTTTGATCAAATTTCGCCCGG 58.741 47.619 23.05 0.00 32.36 5.73
36 37 1.540267 TTGATCAAATTTCGCCCGGT 58.460 45.000 5.45 0.00 0.00 5.28
37 38 1.540267 TGATCAAATTTCGCCCGGTT 58.460 45.000 0.00 0.00 0.00 4.44
38 39 1.201181 TGATCAAATTTCGCCCGGTTG 59.799 47.619 0.00 0.00 0.00 3.77
39 40 0.530288 ATCAAATTTCGCCCGGTTGG 59.470 50.000 0.00 0.00 37.09 3.77
40 41 0.824182 TCAAATTTCGCCCGGTTGGT 60.824 50.000 0.00 0.00 36.04 3.67
41 42 0.032815 CAAATTTCGCCCGGTTGGTT 59.967 50.000 0.00 0.00 36.04 3.67
42 43 0.315886 AAATTTCGCCCGGTTGGTTC 59.684 50.000 0.00 0.00 36.04 3.62
43 44 1.858372 AATTTCGCCCGGTTGGTTCG 61.858 55.000 0.00 0.00 36.04 3.95
44 45 2.734948 ATTTCGCCCGGTTGGTTCGA 62.735 55.000 0.00 0.00 36.82 3.71
45 46 3.869473 TTCGCCCGGTTGGTTCGAG 62.869 63.158 0.00 0.00 38.81 4.04
46 47 4.675029 CGCCCGGTTGGTTCGAGT 62.675 66.667 0.00 0.00 36.04 4.18
47 48 2.281276 GCCCGGTTGGTTCGAGTT 60.281 61.111 0.00 0.00 36.04 3.01
48 49 2.613506 GCCCGGTTGGTTCGAGTTG 61.614 63.158 0.00 0.00 36.04 3.16
49 50 1.227734 CCCGGTTGGTTCGAGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
50 51 0.816421 CCCGGTTGGTTCGAGTTGTT 60.816 55.000 0.00 0.00 0.00 2.83
51 52 0.306533 CCGGTTGGTTCGAGTTGTTG 59.693 55.000 0.00 0.00 0.00 3.33
52 53 1.011333 CGGTTGGTTCGAGTTGTTGT 58.989 50.000 0.00 0.00 0.00 3.32
53 54 1.267832 CGGTTGGTTCGAGTTGTTGTG 60.268 52.381 0.00 0.00 0.00 3.33
54 55 2.011222 GGTTGGTTCGAGTTGTTGTGA 58.989 47.619 0.00 0.00 0.00 3.58
55 56 2.420722 GGTTGGTTCGAGTTGTTGTGAA 59.579 45.455 0.00 0.00 0.00 3.18
56 57 3.119779 GGTTGGTTCGAGTTGTTGTGAAA 60.120 43.478 0.00 0.00 0.00 2.69
57 58 4.477780 GTTGGTTCGAGTTGTTGTGAAAA 58.522 39.130 0.00 0.00 0.00 2.29
58 59 4.974368 TGGTTCGAGTTGTTGTGAAAAT 57.026 36.364 0.00 0.00 0.00 1.82
59 60 6.259638 GTTGGTTCGAGTTGTTGTGAAAATA 58.740 36.000 0.00 0.00 0.00 1.40
60 61 6.627395 TGGTTCGAGTTGTTGTGAAAATAT 57.373 33.333 0.00 0.00 0.00 1.28
61 62 7.731882 TGGTTCGAGTTGTTGTGAAAATATA 57.268 32.000 0.00 0.00 0.00 0.86
62 63 8.330466 TGGTTCGAGTTGTTGTGAAAATATAT 57.670 30.769 0.00 0.00 0.00 0.86
63 64 8.233868 TGGTTCGAGTTGTTGTGAAAATATATG 58.766 33.333 0.00 0.00 0.00 1.78
64 65 7.218204 GGTTCGAGTTGTTGTGAAAATATATGC 59.782 37.037 0.00 0.00 0.00 3.14
65 66 6.474364 TCGAGTTGTTGTGAAAATATATGCG 58.526 36.000 0.00 0.00 0.00 4.73
66 67 5.676744 CGAGTTGTTGTGAAAATATATGCGG 59.323 40.000 0.00 0.00 0.00 5.69
67 68 5.339990 AGTTGTTGTGAAAATATATGCGGC 58.660 37.500 0.00 0.00 0.00 6.53
68 69 5.125417 AGTTGTTGTGAAAATATATGCGGCT 59.875 36.000 0.00 0.00 0.00 5.52
69 70 6.317642 AGTTGTTGTGAAAATATATGCGGCTA 59.682 34.615 0.00 0.00 0.00 3.93
70 71 6.055231 TGTTGTGAAAATATATGCGGCTAC 57.945 37.500 0.00 0.00 0.00 3.58
71 72 4.983215 TGTGAAAATATATGCGGCTACG 57.017 40.909 0.00 0.00 44.63 3.51
72 73 3.743911 TGTGAAAATATATGCGGCTACGG 59.256 43.478 0.00 0.00 41.36 4.02
73 74 3.744426 GTGAAAATATATGCGGCTACGGT 59.256 43.478 0.00 0.00 41.36 4.83
74 75 4.212636 GTGAAAATATATGCGGCTACGGTT 59.787 41.667 0.00 0.00 41.36 4.44
75 76 4.212425 TGAAAATATATGCGGCTACGGTTG 59.788 41.667 0.00 0.00 41.36 3.77
76 77 2.380084 ATATATGCGGCTACGGTTGG 57.620 50.000 0.00 0.00 41.36 3.77
77 78 1.330234 TATATGCGGCTACGGTTGGA 58.670 50.000 0.00 0.00 41.36 3.53
78 79 0.685097 ATATGCGGCTACGGTTGGAT 59.315 50.000 0.00 0.00 41.36 3.41
79 80 0.249699 TATGCGGCTACGGTTGGATG 60.250 55.000 0.00 0.00 41.36 3.51
80 81 1.966901 ATGCGGCTACGGTTGGATGA 61.967 55.000 0.00 0.00 41.36 2.92
81 82 2.171725 GCGGCTACGGTTGGATGAC 61.172 63.158 0.00 0.00 41.36 3.06
82 83 1.515954 CGGCTACGGTTGGATGACT 59.484 57.895 0.00 0.00 36.18 3.41
83 84 0.806102 CGGCTACGGTTGGATGACTG 60.806 60.000 0.00 0.00 36.18 3.51
84 85 0.249398 GGCTACGGTTGGATGACTGT 59.751 55.000 0.00 0.00 41.74 3.55
85 86 1.641577 GCTACGGTTGGATGACTGTC 58.358 55.000 0.00 0.00 39.70 3.51
86 87 1.204941 GCTACGGTTGGATGACTGTCT 59.795 52.381 9.51 0.00 39.70 3.41
87 88 2.735762 GCTACGGTTGGATGACTGTCTC 60.736 54.545 9.51 4.30 39.70 3.36
88 89 0.608640 ACGGTTGGATGACTGTCTCC 59.391 55.000 9.51 12.99 34.03 3.71
89 90 0.108138 CGGTTGGATGACTGTCTCCC 60.108 60.000 17.77 14.43 0.00 4.30
90 91 0.984230 GGTTGGATGACTGTCTCCCA 59.016 55.000 17.77 16.27 0.00 4.37
91 92 1.339151 GGTTGGATGACTGTCTCCCAC 60.339 57.143 17.09 16.33 0.00 4.61
92 93 1.347707 GTTGGATGACTGTCTCCCACA 59.652 52.381 17.09 9.15 29.76 4.17
93 94 1.956869 TGGATGACTGTCTCCCACAT 58.043 50.000 17.77 1.56 33.23 3.21
94 95 1.833630 TGGATGACTGTCTCCCACATC 59.166 52.381 17.77 9.14 37.29 3.06
95 96 1.139853 GGATGACTGTCTCCCACATCC 59.860 57.143 9.51 8.54 46.08 3.51
96 97 0.826715 ATGACTGTCTCCCACATCCG 59.173 55.000 9.51 0.00 33.23 4.18
97 98 0.541998 TGACTGTCTCCCACATCCGT 60.542 55.000 9.51 0.00 33.23 4.69
98 99 0.108615 GACTGTCTCCCACATCCGTG 60.109 60.000 0.00 0.00 43.21 4.94
99 100 0.832135 ACTGTCTCCCACATCCGTGT 60.832 55.000 0.00 0.00 41.93 4.49
100 101 0.108615 CTGTCTCCCACATCCGTGTC 60.109 60.000 0.00 0.00 41.93 3.67
101 102 0.541998 TGTCTCCCACATCCGTGTCT 60.542 55.000 0.00 0.00 41.93 3.41
102 103 0.108615 GTCTCCCACATCCGTGTCTG 60.109 60.000 0.00 0.00 41.93 3.51
103 104 1.448540 CTCCCACATCCGTGTCTGC 60.449 63.158 0.00 0.00 41.93 4.26
104 105 2.815211 CCCACATCCGTGTCTGCG 60.815 66.667 0.00 0.00 41.93 5.18
112 113 4.079090 CGTGTCTGCGGACTGATC 57.921 61.111 25.54 12.49 42.54 2.92
113 114 1.517257 CGTGTCTGCGGACTGATCC 60.517 63.158 25.54 8.20 42.54 3.36
114 115 1.153549 GTGTCTGCGGACTGATCCC 60.154 63.158 25.54 0.00 42.83 3.85
115 116 2.359169 TGTCTGCGGACTGATCCCC 61.359 63.158 25.54 0.00 42.83 4.81
116 117 2.060980 GTCTGCGGACTGATCCCCT 61.061 63.158 18.76 0.00 42.83 4.79
117 118 2.060383 TCTGCGGACTGATCCCCTG 61.060 63.158 0.00 0.00 42.83 4.45
118 119 3.746949 CTGCGGACTGATCCCCTGC 62.747 68.421 0.00 0.00 42.83 4.85
119 120 4.554036 GCGGACTGATCCCCTGCC 62.554 72.222 0.00 0.00 42.83 4.85
120 121 3.866582 CGGACTGATCCCCTGCCC 61.867 72.222 0.00 0.00 42.83 5.36
121 122 3.866582 GGACTGATCCCCTGCCCG 61.867 72.222 0.00 0.00 39.39 6.13
122 123 4.554036 GACTGATCCCCTGCCCGC 62.554 72.222 0.00 0.00 0.00 6.13
132 133 4.240103 CTGCCCGCGGATGGATGA 62.240 66.667 30.73 0.29 0.00 2.92
133 134 4.240103 TGCCCGCGGATGGATGAG 62.240 66.667 30.73 8.26 0.00 2.90
134 135 4.996434 GCCCGCGGATGGATGAGG 62.996 72.222 30.73 7.40 0.00 3.86
135 136 3.233980 CCCGCGGATGGATGAGGA 61.234 66.667 30.73 0.00 0.00 3.71
136 137 2.807107 CCCGCGGATGGATGAGGAA 61.807 63.158 30.73 0.00 0.00 3.36
137 138 1.301244 CCGCGGATGGATGAGGAAG 60.301 63.158 24.07 0.00 0.00 3.46
138 139 1.301244 CGCGGATGGATGAGGAAGG 60.301 63.158 0.00 0.00 0.00 3.46
139 140 1.748329 CGCGGATGGATGAGGAAGGA 61.748 60.000 0.00 0.00 0.00 3.36
140 141 0.469917 GCGGATGGATGAGGAAGGAA 59.530 55.000 0.00 0.00 0.00 3.36
141 142 1.134098 GCGGATGGATGAGGAAGGAAA 60.134 52.381 0.00 0.00 0.00 3.13
142 143 2.487986 GCGGATGGATGAGGAAGGAAAT 60.488 50.000 0.00 0.00 0.00 2.17
143 144 3.825328 CGGATGGATGAGGAAGGAAATT 58.175 45.455 0.00 0.00 0.00 1.82
144 145 4.210331 CGGATGGATGAGGAAGGAAATTT 58.790 43.478 0.00 0.00 0.00 1.82
145 146 4.037208 CGGATGGATGAGGAAGGAAATTTG 59.963 45.833 0.00 0.00 0.00 2.32
146 147 4.202192 GGATGGATGAGGAAGGAAATTTGC 60.202 45.833 0.68 0.68 0.00 3.68
147 148 2.754552 TGGATGAGGAAGGAAATTTGCG 59.245 45.455 3.87 0.00 0.00 4.85
148 149 2.099756 GGATGAGGAAGGAAATTTGCGG 59.900 50.000 3.87 0.00 0.00 5.69
149 150 1.544724 TGAGGAAGGAAATTTGCGGG 58.455 50.000 3.87 0.00 0.00 6.13
150 151 1.203001 TGAGGAAGGAAATTTGCGGGT 60.203 47.619 3.87 0.00 0.00 5.28
151 152 1.893137 GAGGAAGGAAATTTGCGGGTT 59.107 47.619 3.87 0.00 0.00 4.11
152 153 3.086282 GAGGAAGGAAATTTGCGGGTTA 58.914 45.455 3.87 0.00 0.00 2.85
153 154 2.823747 AGGAAGGAAATTTGCGGGTTAC 59.176 45.455 3.87 0.00 0.00 2.50
154 155 2.094390 GGAAGGAAATTTGCGGGTTACC 60.094 50.000 3.87 0.00 0.00 2.85
155 156 2.296073 AGGAAATTTGCGGGTTACCA 57.704 45.000 2.98 0.00 36.13 3.25
156 157 2.815158 AGGAAATTTGCGGGTTACCAT 58.185 42.857 2.98 0.00 36.13 3.55
157 158 3.169908 AGGAAATTTGCGGGTTACCATT 58.830 40.909 2.98 0.00 36.13 3.16
158 159 4.345854 AGGAAATTTGCGGGTTACCATTA 58.654 39.130 2.98 0.00 36.13 1.90
159 160 4.773149 AGGAAATTTGCGGGTTACCATTAA 59.227 37.500 2.98 0.00 36.13 1.40
160 161 5.246429 AGGAAATTTGCGGGTTACCATTAAA 59.754 36.000 2.98 1.31 36.13 1.52
161 162 5.579119 GGAAATTTGCGGGTTACCATTAAAG 59.421 40.000 2.98 0.00 36.13 1.85
162 163 5.986501 AATTTGCGGGTTACCATTAAAGA 57.013 34.783 2.98 0.00 36.13 2.52
163 164 6.538945 AATTTGCGGGTTACCATTAAAGAT 57.461 33.333 2.98 0.00 36.13 2.40
164 165 4.974368 TTGCGGGTTACCATTAAAGATG 57.026 40.909 2.98 0.00 36.13 2.90
165 166 2.685897 TGCGGGTTACCATTAAAGATGC 59.314 45.455 2.98 0.00 36.13 3.91
166 167 2.034179 GCGGGTTACCATTAAAGATGCC 59.966 50.000 2.98 0.00 36.13 4.40
167 168 2.621526 CGGGTTACCATTAAAGATGCCC 59.378 50.000 2.98 0.00 36.13 5.36
168 169 2.621526 GGGTTACCATTAAAGATGCCCG 59.378 50.000 2.98 0.00 36.50 6.13
169 170 3.284617 GGTTACCATTAAAGATGCCCGT 58.715 45.455 0.00 0.00 0.00 5.28
170 171 4.453751 GGTTACCATTAAAGATGCCCGTA 58.546 43.478 0.00 0.00 0.00 4.02
171 172 4.514066 GGTTACCATTAAAGATGCCCGTAG 59.486 45.833 0.00 0.00 0.00 3.51
172 173 3.926058 ACCATTAAAGATGCCCGTAGT 57.074 42.857 0.00 0.00 0.00 2.73
173 174 4.230745 ACCATTAAAGATGCCCGTAGTT 57.769 40.909 0.00 0.00 0.00 2.24
174 175 4.595986 ACCATTAAAGATGCCCGTAGTTT 58.404 39.130 0.00 0.00 0.00 2.66
175 176 5.014202 ACCATTAAAGATGCCCGTAGTTTT 58.986 37.500 0.00 0.00 0.00 2.43
176 177 5.479027 ACCATTAAAGATGCCCGTAGTTTTT 59.521 36.000 0.00 0.00 0.00 1.94
177 178 5.804979 CCATTAAAGATGCCCGTAGTTTTTG 59.195 40.000 0.00 0.00 0.00 2.44
178 179 6.386654 CATTAAAGATGCCCGTAGTTTTTGT 58.613 36.000 0.00 0.00 0.00 2.83
179 180 4.499037 AAAGATGCCCGTAGTTTTTGTC 57.501 40.909 0.00 0.00 0.00 3.18
206 207 6.674760 GCATTTACGTAAACCTCAACCTCATC 60.675 42.308 22.30 0.00 0.00 2.92
208 209 6.839124 TTACGTAAACCTCAACCTCATCTA 57.161 37.500 5.31 0.00 0.00 1.98
220 221 0.867753 CTCATCTAGGCGTGTCGTGC 60.868 60.000 0.00 0.00 0.00 5.34
275 278 4.403453 GTGTCATTTATGCTTTCGGTGTC 58.597 43.478 0.00 0.00 0.00 3.67
301 304 1.076265 AGCCATCAGCCATGCACAT 60.076 52.632 0.00 0.00 45.47 3.21
401 410 6.402118 CGATTTCGTGACACCAGACAATTTAT 60.402 38.462 0.00 0.00 34.11 1.40
432 441 2.487532 GGGACATGATGCTGCCTGC 61.488 63.158 0.00 0.00 43.25 4.85
440 449 0.585357 GATGCTGCCTGCGTGATTAG 59.415 55.000 0.00 0.00 46.63 1.73
441 450 1.442526 ATGCTGCCTGCGTGATTAGC 61.443 55.000 0.00 0.00 46.63 3.09
442 451 2.828128 GCTGCCTGCGTGATTAGCC 61.828 63.158 0.00 0.00 0.00 3.93
443 452 1.450134 CTGCCTGCGTGATTAGCCA 60.450 57.895 0.00 0.00 0.00 4.75
445 454 1.096967 TGCCTGCGTGATTAGCCATG 61.097 55.000 0.00 0.00 0.00 3.66
446 455 1.650912 CCTGCGTGATTAGCCATGC 59.349 57.895 0.00 0.00 46.35 4.06
449 458 2.397751 GCGTGATTAGCCATGCACT 58.602 52.632 0.00 0.00 45.68 4.40
451 460 0.578683 CGTGATTAGCCATGCACTCG 59.421 55.000 0.00 0.00 0.00 4.18
453 462 1.594862 GTGATTAGCCATGCACTCGAC 59.405 52.381 0.00 0.00 0.00 4.20
454 463 1.206849 TGATTAGCCATGCACTCGACA 59.793 47.619 0.00 0.00 0.00 4.35
455 464 2.158914 TGATTAGCCATGCACTCGACAT 60.159 45.455 0.00 0.00 0.00 3.06
456 465 1.655484 TTAGCCATGCACTCGACATG 58.345 50.000 7.36 7.36 43.67 3.21
459 468 4.623814 CATGCACTCGACATGGGT 57.376 55.556 6.60 0.00 40.99 4.51
460 469 2.858622 CATGCACTCGACATGGGTT 58.141 52.632 6.60 0.00 40.99 4.11
461 470 0.729116 CATGCACTCGACATGGGTTC 59.271 55.000 6.60 0.00 40.99 3.62
462 471 0.324614 ATGCACTCGACATGGGTTCA 59.675 50.000 0.00 0.00 0.00 3.18
463 472 0.324614 TGCACTCGACATGGGTTCAT 59.675 50.000 0.00 0.00 0.00 2.57
464 473 1.271325 TGCACTCGACATGGGTTCATT 60.271 47.619 0.00 0.00 0.00 2.57
465 474 1.812571 GCACTCGACATGGGTTCATTT 59.187 47.619 0.00 0.00 0.00 2.32
466 475 2.228822 GCACTCGACATGGGTTCATTTT 59.771 45.455 0.00 0.00 0.00 1.82
467 476 3.438781 GCACTCGACATGGGTTCATTTTA 59.561 43.478 0.00 0.00 0.00 1.52
612 621 1.105167 CAGCATCGCACCCATTCCAT 61.105 55.000 0.00 0.00 0.00 3.41
613 622 0.820891 AGCATCGCACCCATTCCATC 60.821 55.000 0.00 0.00 0.00 3.51
614 623 1.799258 GCATCGCACCCATTCCATCC 61.799 60.000 0.00 0.00 0.00 3.51
615 624 1.151450 ATCGCACCCATTCCATCCC 59.849 57.895 0.00 0.00 0.00 3.85
616 625 1.644437 ATCGCACCCATTCCATCCCA 61.644 55.000 0.00 0.00 0.00 4.37
890 915 3.844090 GCCGTCTCCTCTCCTGCC 61.844 72.222 0.00 0.00 0.00 4.85
1485 1535 1.142748 CGCTGATTTCGAGCTCCCT 59.857 57.895 8.47 0.00 34.03 4.20
1574 1624 3.461773 AGCCCGTCCCGATGTGAG 61.462 66.667 0.00 0.00 0.00 3.51
1590 1640 1.078143 GAGGAAACCAGGCTGCGAT 60.078 57.895 9.56 0.00 0.00 4.58
1743 1793 2.040813 ACCACAGGCAATCAGATCTGTT 59.959 45.455 21.92 11.55 38.27 3.16
1848 1898 1.361668 CCGAGGAATTCACAGGCACG 61.362 60.000 7.93 0.00 0.00 5.34
2017 2067 4.278669 TCAGCGAGTAAGTTCTCTTCACTT 59.721 41.667 0.00 0.00 38.13 3.16
2023 2073 6.144724 CGAGTAAGTTCTCTTCACTTTTCAGG 59.855 42.308 0.00 0.00 35.95 3.86
2069 2122 5.691815 TGGTTGTTAACGTTATGCTTAAGC 58.308 37.500 20.84 20.84 42.50 3.09
2143 2196 1.988107 TCCAGAAGCCTTGATCAACCT 59.012 47.619 3.38 0.95 0.00 3.50
2201 2297 6.741521 GCAAAATACAGATGCCTAGCCTAGTA 60.742 42.308 0.00 0.00 34.03 1.82
2202 2298 5.986501 AATACAGATGCCTAGCCTAGTAC 57.013 43.478 0.00 0.00 0.00 2.73
2203 2299 3.603965 ACAGATGCCTAGCCTAGTACT 57.396 47.619 0.00 0.00 0.00 2.73
2204 2300 3.917300 ACAGATGCCTAGCCTAGTACTT 58.083 45.455 0.00 0.00 0.00 2.24
2205 2301 3.892588 ACAGATGCCTAGCCTAGTACTTC 59.107 47.826 0.00 0.00 0.00 3.01
2206 2302 3.257127 CAGATGCCTAGCCTAGTACTTCC 59.743 52.174 0.00 0.00 0.00 3.46
2207 2303 3.141272 AGATGCCTAGCCTAGTACTTCCT 59.859 47.826 0.00 0.00 0.00 3.36
2208 2304 2.946785 TGCCTAGCCTAGTACTTCCTC 58.053 52.381 0.00 0.00 0.00 3.71
2209 2305 2.241160 GCCTAGCCTAGTACTTCCTCC 58.759 57.143 0.00 0.00 0.00 4.30
2210 2306 2.506444 CCTAGCCTAGTACTTCCTCCG 58.494 57.143 0.00 0.00 0.00 4.63
2211 2307 2.158638 CCTAGCCTAGTACTTCCTCCGT 60.159 54.545 0.00 0.00 0.00 4.69
2212 2308 2.055684 AGCCTAGTACTTCCTCCGTC 57.944 55.000 0.00 0.00 0.00 4.79
2213 2309 1.031235 GCCTAGTACTTCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
2214 2310 1.689984 CCTAGTACTTCCTCCGTCCC 58.310 60.000 0.00 0.00 0.00 4.46
2215 2311 1.064166 CCTAGTACTTCCTCCGTCCCA 60.064 57.143 0.00 0.00 0.00 4.37
2216 2312 2.622452 CCTAGTACTTCCTCCGTCCCAA 60.622 54.545 0.00 0.00 0.00 4.12
2217 2313 2.019807 AGTACTTCCTCCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2218 2314 2.332117 AGTACTTCCTCCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2219 2315 2.910977 AGTACTTCCTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2220 2316 2.200373 ACTTCCTCCGTCCCAAAATG 57.800 50.000 0.00 0.00 0.00 2.32
2221 2317 1.702957 ACTTCCTCCGTCCCAAAATGA 59.297 47.619 0.00 0.00 0.00 2.57
2222 2318 2.290323 ACTTCCTCCGTCCCAAAATGAG 60.290 50.000 0.00 0.00 0.00 2.90
2223 2319 0.035439 TCCTCCGTCCCAAAATGAGC 60.035 55.000 0.00 0.00 0.00 4.26
2224 2320 1.369091 CCTCCGTCCCAAAATGAGCG 61.369 60.000 0.00 0.00 0.00 5.03
2225 2321 0.673644 CTCCGTCCCAAAATGAGCGT 60.674 55.000 0.00 0.00 0.00 5.07
2226 2322 0.672401 TCCGTCCCAAAATGAGCGTC 60.672 55.000 0.00 0.00 0.00 5.19
2227 2323 0.673644 CCGTCCCAAAATGAGCGTCT 60.674 55.000 0.00 0.00 0.00 4.18
2228 2324 0.721718 CGTCCCAAAATGAGCGTCTC 59.278 55.000 0.58 0.58 0.00 3.36
2229 2325 1.808411 GTCCCAAAATGAGCGTCTCA 58.192 50.000 11.12 11.12 44.99 3.27
2230 2326 2.151202 GTCCCAAAATGAGCGTCTCAA 58.849 47.619 12.43 0.00 44.04 3.02
2231 2327 2.095718 GTCCCAAAATGAGCGTCTCAAC 60.096 50.000 12.43 2.84 44.04 3.18
2232 2328 2.154462 CCCAAAATGAGCGTCTCAACT 58.846 47.619 12.43 2.45 44.04 3.16
2233 2329 2.554032 CCCAAAATGAGCGTCTCAACTT 59.446 45.455 12.43 7.40 44.04 2.66
2234 2330 3.004734 CCCAAAATGAGCGTCTCAACTTT 59.995 43.478 12.43 11.69 44.04 2.66
2235 2331 3.976942 CCAAAATGAGCGTCTCAACTTTG 59.023 43.478 23.00 23.00 44.04 2.77
2236 2332 4.498009 CCAAAATGAGCGTCTCAACTTTGT 60.498 41.667 25.01 10.18 44.04 2.83
2237 2333 5.277779 CCAAAATGAGCGTCTCAACTTTGTA 60.278 40.000 25.01 5.23 44.04 2.41
2238 2334 4.992381 AATGAGCGTCTCAACTTTGTAC 57.008 40.909 12.43 0.00 44.04 2.90
2239 2335 3.728076 TGAGCGTCTCAACTTTGTACT 57.272 42.857 7.02 0.00 37.57 2.73
2240 2336 4.841443 TGAGCGTCTCAACTTTGTACTA 57.159 40.909 7.02 0.00 37.57 1.82
2241 2337 5.190992 TGAGCGTCTCAACTTTGTACTAA 57.809 39.130 7.02 0.00 37.57 2.24
2242 2338 5.593968 TGAGCGTCTCAACTTTGTACTAAA 58.406 37.500 7.02 0.00 37.57 1.85
2243 2339 5.690409 TGAGCGTCTCAACTTTGTACTAAAG 59.310 40.000 13.08 13.08 37.57 1.85
2244 2340 5.598769 AGCGTCTCAACTTTGTACTAAAGT 58.401 37.500 14.04 14.04 41.82 2.66
2246 2342 7.205297 AGCGTCTCAACTTTGTACTAAAGTTA 58.795 34.615 23.56 13.47 45.57 2.24
2247 2343 7.381678 AGCGTCTCAACTTTGTACTAAAGTTAG 59.618 37.037 23.56 20.62 45.57 2.34
2248 2344 7.168804 GCGTCTCAACTTTGTACTAAAGTTAGT 59.831 37.037 23.56 8.67 45.57 2.24
2249 2345 9.669353 CGTCTCAACTTTGTACTAAAGTTAGTA 57.331 33.333 23.56 6.81 45.57 1.82
2275 2371 9.097946 ACAAAGTTATACTAGGGTTAAGACACT 57.902 33.333 0.00 0.00 43.47 3.55
2276 2372 9.939802 CAAAGTTATACTAGGGTTAAGACACTT 57.060 33.333 0.00 0.00 40.79 3.16
2283 2379 9.901172 ATACTAGGGTTAAGACACTTATTTTGG 57.099 33.333 0.00 0.00 40.79 3.28
2284 2380 7.173032 ACTAGGGTTAAGACACTTATTTTGGG 58.827 38.462 0.00 0.00 40.79 4.12
2285 2381 6.208840 AGGGTTAAGACACTTATTTTGGGA 57.791 37.500 0.00 0.00 35.49 4.37
2286 2382 6.008331 AGGGTTAAGACACTTATTTTGGGAC 58.992 40.000 0.00 0.00 35.49 4.46
2287 2383 5.106436 GGGTTAAGACACTTATTTTGGGACG 60.106 44.000 0.00 0.00 0.00 4.79
2288 2384 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
2289 2385 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2290 2386 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2291 2387 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2292 2388 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2293 2389 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2294 2390 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2295 2391 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2402 2498 1.944430 GCTACCCAGTTCCGAACCAAG 60.944 57.143 7.68 0.00 0.00 3.61
2466 2562 2.211250 ATTGCACTGCATCAGTTCCT 57.789 45.000 4.10 0.00 42.59 3.36
2488 2587 6.761242 TCCTGTTCTGAATTATGTGGTATTCG 59.239 38.462 0.00 0.00 34.29 3.34
2536 2635 2.502947 ACATGAAGGACTGCAGCATCTA 59.497 45.455 15.27 0.00 0.00 1.98
2573 2672 4.829492 AGGCTGCTCTTATGTTTTTCTGTT 59.171 37.500 0.00 0.00 0.00 3.16
2759 2858 9.445786 GGTTGTTTGTGTTATTGATAATATCGG 57.554 33.333 0.00 0.00 0.00 4.18
2921 3022 2.737252 GGAACTGACAAAGTAAGCTCCG 59.263 50.000 0.00 0.00 38.56 4.63
2941 3042 2.485426 CGTGATCTTCCAGTTGTGCATT 59.515 45.455 0.00 0.00 0.00 3.56
3058 3159 2.824341 GTTCCAGGAGGACTCGAAACTA 59.176 50.000 0.00 0.00 45.73 2.24
3272 3373 7.092802 TGGTTTACCATGGTGTAAGATTAGCTA 60.093 37.037 28.17 0.00 42.01 3.32
3273 3374 7.441458 GGTTTACCATGGTGTAAGATTAGCTAG 59.559 40.741 28.17 0.00 32.63 3.42
3274 3375 7.907841 TTACCATGGTGTAAGATTAGCTAGA 57.092 36.000 28.17 0.00 0.00 2.43
3275 3376 8.492415 TTACCATGGTGTAAGATTAGCTAGAT 57.508 34.615 28.17 0.00 0.00 1.98
3430 3613 0.107066 TGGTGCATGCGAATGGATCT 60.107 50.000 14.09 0.00 0.00 2.75
3499 3682 9.823647 TTTCTTGTAAAACCTGCATAATTTTGA 57.176 25.926 11.11 0.87 0.00 2.69
3662 3845 7.548097 TCACCACACTCTTAAGATCAGATTAC 58.452 38.462 5.44 0.00 0.00 1.89
3738 3921 9.638300 CGTTGAGAATAATCAATTAGCAAGTAC 57.362 33.333 0.00 0.00 34.02 2.73
3741 3924 9.547753 TGAGAATAATCAATTAGCAAGTACTCC 57.452 33.333 0.00 0.00 0.00 3.85
3742 3925 8.910351 AGAATAATCAATTAGCAAGTACTCCC 57.090 34.615 0.00 0.00 0.00 4.30
3743 3926 8.718656 AGAATAATCAATTAGCAAGTACTCCCT 58.281 33.333 0.00 0.00 0.00 4.20
3744 3927 8.910351 AATAATCAATTAGCAAGTACTCCCTC 57.090 34.615 0.00 0.00 0.00 4.30
3745 3928 4.755266 TCAATTAGCAAGTACTCCCTCC 57.245 45.455 0.00 0.00 0.00 4.30
3746 3929 3.132289 TCAATTAGCAAGTACTCCCTCCG 59.868 47.826 0.00 0.00 0.00 4.63
3747 3930 2.226962 TTAGCAAGTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
3748 3931 3.370840 TTAGCAAGTACTCCCTCCGTA 57.629 47.619 0.00 0.00 0.00 4.02
3749 3932 2.226962 AGCAAGTACTCCCTCCGTAA 57.773 50.000 0.00 0.00 0.00 3.18
3750 3933 2.532843 AGCAAGTACTCCCTCCGTAAA 58.467 47.619 0.00 0.00 0.00 2.01
3751 3934 2.233186 AGCAAGTACTCCCTCCGTAAAC 59.767 50.000 0.00 0.00 0.00 2.01
3752 3935 2.233186 GCAAGTACTCCCTCCGTAAACT 59.767 50.000 0.00 0.00 0.00 2.66
3753 3936 3.445096 GCAAGTACTCCCTCCGTAAACTA 59.555 47.826 0.00 0.00 0.00 2.24
3754 3937 4.082026 GCAAGTACTCCCTCCGTAAACTAA 60.082 45.833 0.00 0.00 0.00 2.24
3755 3938 5.394993 GCAAGTACTCCCTCCGTAAACTAAT 60.395 44.000 0.00 0.00 0.00 1.73
3756 3939 6.183360 GCAAGTACTCCCTCCGTAAACTAATA 60.183 42.308 0.00 0.00 0.00 0.98
3757 3940 7.471120 GCAAGTACTCCCTCCGTAAACTAATAT 60.471 40.741 0.00 0.00 0.00 1.28
3758 3941 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
3759 3942 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
3760 3943 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3761 3944 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3762 3945 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3763 3946 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3764 3947 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3765 3948 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3766 3949 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3767 3950 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3768 3951 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3769 3952 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3770 3953 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3815 3998 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
3816 3999 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
3817 4000 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
3818 4001 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
3819 4002 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
3974 4158 3.068165 TCGTCATGGCTCACTATTAGTGG 59.932 47.826 20.83 13.65 45.94 4.00
4060 4244 7.137490 ACTAAGCGGTTAATTTAAGTTGGAC 57.863 36.000 8.61 0.00 0.00 4.02
4063 4247 5.310451 AGCGGTTAATTTAAGTTGGACTGA 58.690 37.500 10.20 0.00 0.00 3.41
4382 4571 8.919145 TCCAGTGTTGGTTTAAAATCTGTAAAT 58.081 29.630 0.00 0.00 45.26 1.40
4390 4579 9.362151 TGGTTTAAAATCTGTAAATGGTCTCTT 57.638 29.630 0.00 0.00 0.00 2.85
4619 4808 5.991606 TCCTTTTGTGAATAGATCTATGCGG 59.008 40.000 16.01 9.41 0.00 5.69
4631 4820 3.413846 TCTATGCGGTCTATACGGTCT 57.586 47.619 0.00 0.00 0.00 3.85
4672 4861 3.440173 CCAAATTCTTCTACACGTGGCAT 59.560 43.478 21.57 0.74 0.00 4.40
4676 4865 1.893137 TCTTCTACACGTGGCATGAGT 59.107 47.619 21.57 14.43 0.00 3.41
4810 4999 2.961526 TCGCCTGGTTAATCTGACTC 57.038 50.000 0.00 0.00 0.00 3.36
4948 5142 8.036273 TGTTAGTTGATTCTTTACCGAATTCC 57.964 34.615 0.00 0.00 33.96 3.01
4990 5184 0.263765 TGCCCGGGGAGTAGAGTAAT 59.736 55.000 25.28 0.00 0.00 1.89
5062 5256 4.769688 CATGGTGACTTACTGCCTTGATA 58.230 43.478 0.00 0.00 0.00 2.15
5088 5287 2.286872 GTCATGGTGCTGAATGAGAGG 58.713 52.381 0.00 0.00 33.58 3.69
5102 5303 3.194005 TGAGAGGTTTCACTGGTTGTC 57.806 47.619 0.00 0.00 0.00 3.18
5145 5346 4.207165 AGCAAAAGAGTAAAGAACAGGCA 58.793 39.130 0.00 0.00 0.00 4.75
5159 5360 1.202976 ACAGGCATGCTCTGGAACTTT 60.203 47.619 28.43 12.39 36.62 2.66
5230 5431 1.395954 GGAACTTTCGATAACGGTGGC 59.604 52.381 0.00 0.00 40.21 5.01
5408 5610 4.021822 CACGCGTATTTGCTGACTTATTG 58.978 43.478 13.44 0.00 0.00 1.90
5409 5611 3.930229 ACGCGTATTTGCTGACTTATTGA 59.070 39.130 11.67 0.00 0.00 2.57
5449 5656 4.604976 CCTGCTTTGTTTCTTTGTGAGAG 58.395 43.478 0.00 0.00 35.37 3.20
5490 5697 1.810030 GATCGGGAACAGGACGTGC 60.810 63.158 0.00 0.00 0.00 5.34
5508 5715 4.391830 ACGTGCATACAGTTCAACCATAAG 59.608 41.667 0.00 0.00 0.00 1.73
5566 5773 4.325030 GGTGTTAGGGGATGGAGAATCAAA 60.325 45.833 0.00 0.00 36.98 2.69
5570 5777 6.959366 TGTTAGGGGATGGAGAATCAAATTTT 59.041 34.615 0.00 0.00 36.98 1.82
5574 5781 6.155737 AGGGGATGGAGAATCAAATTTTGAAG 59.844 38.462 15.34 0.00 43.95 3.02
5580 5787 5.346011 GGAGAATCAAATTTTGAAGAACGGC 59.654 40.000 15.34 2.99 43.95 5.68
5585 5792 3.643159 AATTTTGAAGAACGGCTGTCC 57.357 42.857 0.00 0.00 0.00 4.02
5628 5836 3.719871 TCCCAGGTGTAGAAAGCATAGA 58.280 45.455 0.00 0.00 0.00 1.98
5673 5881 2.616510 CCGAACTGAGGAAGGAAGCAAT 60.617 50.000 0.00 0.00 0.00 3.56
5674 5882 2.675348 CGAACTGAGGAAGGAAGCAATC 59.325 50.000 0.00 0.00 0.00 2.67
5675 5883 3.618507 CGAACTGAGGAAGGAAGCAATCT 60.619 47.826 0.00 0.00 0.00 2.40
5677 5885 2.026449 ACTGAGGAAGGAAGCAATCTGG 60.026 50.000 0.00 0.00 0.00 3.86
5680 5888 3.181429 TGAGGAAGGAAGCAATCTGGTTT 60.181 43.478 0.00 0.00 38.31 3.27
5682 5890 2.232208 GGAAGGAAGCAATCTGGTTTGG 59.768 50.000 0.00 0.00 38.31 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.457603 TGATCAAACCGGACGAATTTTGAT 59.542 37.500 21.73 21.73 46.45 2.57
1 2 3.815962 TGATCAAACCGGACGAATTTTGA 59.184 39.130 9.46 13.48 41.06 2.69
2 3 4.153958 TGATCAAACCGGACGAATTTTG 57.846 40.909 9.46 7.62 0.00 2.44
3 4 4.839668 TTGATCAAACCGGACGAATTTT 57.160 36.364 9.46 0.00 0.00 1.82
4 5 4.839668 TTTGATCAAACCGGACGAATTT 57.160 36.364 16.91 0.00 0.00 1.82
5 6 5.385509 AATTTGATCAAACCGGACGAATT 57.614 34.783 22.71 7.46 32.51 2.17
6 7 5.385509 AAATTTGATCAAACCGGACGAAT 57.614 34.783 22.71 1.19 32.51 3.34
7 8 4.611807 CGAAATTTGATCAAACCGGACGAA 60.612 41.667 22.71 0.00 32.51 3.85
8 9 3.120477 CGAAATTTGATCAAACCGGACGA 60.120 43.478 22.71 0.61 32.51 4.20
9 10 3.160545 CGAAATTTGATCAAACCGGACG 58.839 45.455 22.71 18.00 32.51 4.79
10 11 2.914838 GCGAAATTTGATCAAACCGGAC 59.085 45.455 22.71 9.39 32.51 4.79
11 12 2.094957 GGCGAAATTTGATCAAACCGGA 60.095 45.455 22.71 0.71 32.51 5.14
12 13 2.258755 GGCGAAATTTGATCAAACCGG 58.741 47.619 22.71 13.09 32.51 5.28
13 14 2.258755 GGGCGAAATTTGATCAAACCG 58.741 47.619 22.71 23.30 32.51 4.44
14 15 2.258755 CGGGCGAAATTTGATCAAACC 58.741 47.619 22.71 17.60 32.51 3.27
15 16 2.258755 CCGGGCGAAATTTGATCAAAC 58.741 47.619 22.71 9.80 32.51 2.93
16 17 1.889829 ACCGGGCGAAATTTGATCAAA 59.110 42.857 22.52 22.52 34.46 2.69
17 18 1.540267 ACCGGGCGAAATTTGATCAA 58.460 45.000 6.32 3.38 0.00 2.57
18 19 1.201181 CAACCGGGCGAAATTTGATCA 59.799 47.619 6.32 0.00 0.00 2.92
19 20 1.469079 CCAACCGGGCGAAATTTGATC 60.469 52.381 6.32 0.00 0.00 2.92
20 21 0.530288 CCAACCGGGCGAAATTTGAT 59.470 50.000 6.32 0.00 0.00 2.57
21 22 0.824182 ACCAACCGGGCGAAATTTGA 60.824 50.000 6.32 0.00 42.05 2.69
22 23 0.032815 AACCAACCGGGCGAAATTTG 59.967 50.000 6.32 0.00 42.05 2.32
23 24 0.315886 GAACCAACCGGGCGAAATTT 59.684 50.000 6.32 0.00 42.05 1.82
24 25 1.858372 CGAACCAACCGGGCGAAATT 61.858 55.000 6.32 0.00 42.05 1.82
25 26 2.329614 CGAACCAACCGGGCGAAAT 61.330 57.895 6.32 0.00 42.05 2.17
26 27 2.973600 CGAACCAACCGGGCGAAA 60.974 61.111 6.32 0.00 42.05 3.46
27 28 3.869473 CTCGAACCAACCGGGCGAA 62.869 63.158 6.32 0.00 40.96 4.70
28 29 4.367023 CTCGAACCAACCGGGCGA 62.367 66.667 6.32 4.04 42.05 5.54
29 30 4.675029 ACTCGAACCAACCGGGCG 62.675 66.667 6.32 0.00 42.05 6.13
30 31 2.281276 AACTCGAACCAACCGGGC 60.281 61.111 6.32 0.00 42.05 6.13
31 32 0.816421 AACAACTCGAACCAACCGGG 60.816 55.000 6.32 0.00 44.81 5.73
32 33 0.306533 CAACAACTCGAACCAACCGG 59.693 55.000 0.00 0.00 38.77 5.28
33 34 1.011333 ACAACAACTCGAACCAACCG 58.989 50.000 0.00 0.00 0.00 4.44
34 35 2.011222 TCACAACAACTCGAACCAACC 58.989 47.619 0.00 0.00 0.00 3.77
35 36 3.750639 TTCACAACAACTCGAACCAAC 57.249 42.857 0.00 0.00 0.00 3.77
36 37 4.768130 TTTTCACAACAACTCGAACCAA 57.232 36.364 0.00 0.00 0.00 3.67
37 38 4.974368 ATTTTCACAACAACTCGAACCA 57.026 36.364 0.00 0.00 0.00 3.67
38 39 7.218204 GCATATATTTTCACAACAACTCGAACC 59.782 37.037 0.00 0.00 0.00 3.62
39 40 7.045612 CGCATATATTTTCACAACAACTCGAAC 60.046 37.037 0.00 0.00 0.00 3.95
40 41 6.958752 CGCATATATTTTCACAACAACTCGAA 59.041 34.615 0.00 0.00 0.00 3.71
41 42 6.456315 CCGCATATATTTTCACAACAACTCGA 60.456 38.462 0.00 0.00 0.00 4.04
42 43 5.676744 CCGCATATATTTTCACAACAACTCG 59.323 40.000 0.00 0.00 0.00 4.18
43 44 5.455525 GCCGCATATATTTTCACAACAACTC 59.544 40.000 0.00 0.00 0.00 3.01
44 45 5.125417 AGCCGCATATATTTTCACAACAACT 59.875 36.000 0.00 0.00 0.00 3.16
45 46 5.339990 AGCCGCATATATTTTCACAACAAC 58.660 37.500 0.00 0.00 0.00 3.32
46 47 5.574891 AGCCGCATATATTTTCACAACAA 57.425 34.783 0.00 0.00 0.00 2.83
47 48 5.277106 CGTAGCCGCATATATTTTCACAACA 60.277 40.000 0.00 0.00 0.00 3.33
48 49 5.137403 CGTAGCCGCATATATTTTCACAAC 58.863 41.667 0.00 0.00 0.00 3.32
49 50 4.212425 CCGTAGCCGCATATATTTTCACAA 59.788 41.667 0.00 0.00 0.00 3.33
50 51 3.743911 CCGTAGCCGCATATATTTTCACA 59.256 43.478 0.00 0.00 0.00 3.58
51 52 3.744426 ACCGTAGCCGCATATATTTTCAC 59.256 43.478 0.00 0.00 0.00 3.18
52 53 3.997762 ACCGTAGCCGCATATATTTTCA 58.002 40.909 0.00 0.00 0.00 2.69
53 54 4.378046 CCAACCGTAGCCGCATATATTTTC 60.378 45.833 0.00 0.00 0.00 2.29
54 55 3.500680 CCAACCGTAGCCGCATATATTTT 59.499 43.478 0.00 0.00 0.00 1.82
55 56 3.071479 CCAACCGTAGCCGCATATATTT 58.929 45.455 0.00 0.00 0.00 1.40
56 57 2.300723 TCCAACCGTAGCCGCATATATT 59.699 45.455 0.00 0.00 0.00 1.28
57 58 1.897133 TCCAACCGTAGCCGCATATAT 59.103 47.619 0.00 0.00 0.00 0.86
58 59 1.330234 TCCAACCGTAGCCGCATATA 58.670 50.000 0.00 0.00 0.00 0.86
59 60 0.685097 ATCCAACCGTAGCCGCATAT 59.315 50.000 0.00 0.00 0.00 1.78
60 61 0.249699 CATCCAACCGTAGCCGCATA 60.250 55.000 0.00 0.00 0.00 3.14
61 62 1.523711 CATCCAACCGTAGCCGCAT 60.524 57.895 0.00 0.00 0.00 4.73
62 63 2.125310 CATCCAACCGTAGCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
63 64 2.171725 GTCATCCAACCGTAGCCGC 61.172 63.158 0.00 0.00 0.00 6.53
64 65 0.806102 CAGTCATCCAACCGTAGCCG 60.806 60.000 0.00 0.00 0.00 5.52
65 66 0.249398 ACAGTCATCCAACCGTAGCC 59.751 55.000 0.00 0.00 0.00 3.93
66 67 1.204941 AGACAGTCATCCAACCGTAGC 59.795 52.381 2.66 0.00 0.00 3.58
67 68 2.159226 GGAGACAGTCATCCAACCGTAG 60.159 54.545 2.66 0.00 35.54 3.51
68 69 1.822990 GGAGACAGTCATCCAACCGTA 59.177 52.381 2.66 0.00 35.54 4.02
69 70 0.608640 GGAGACAGTCATCCAACCGT 59.391 55.000 2.66 0.00 35.54 4.83
70 71 0.108138 GGGAGACAGTCATCCAACCG 60.108 60.000 16.47 0.00 37.33 4.44
71 72 0.984230 TGGGAGACAGTCATCCAACC 59.016 55.000 16.47 5.31 37.33 3.77
72 73 1.347707 TGTGGGAGACAGTCATCCAAC 59.652 52.381 14.27 14.70 39.62 3.77
73 74 1.728323 TGTGGGAGACAGTCATCCAA 58.272 50.000 14.27 4.69 37.33 3.53
74 75 1.833630 GATGTGGGAGACAGTCATCCA 59.166 52.381 16.47 13.51 38.23 3.41
75 76 1.139853 GGATGTGGGAGACAGTCATCC 59.860 57.143 2.66 6.89 41.93 3.51
76 77 1.202463 CGGATGTGGGAGACAGTCATC 60.202 57.143 2.66 0.00 38.23 2.92
77 78 0.826715 CGGATGTGGGAGACAGTCAT 59.173 55.000 2.66 0.00 38.23 3.06
78 79 0.541998 ACGGATGTGGGAGACAGTCA 60.542 55.000 2.66 0.00 38.23 3.41
79 80 0.108615 CACGGATGTGGGAGACAGTC 60.109 60.000 0.00 0.00 42.59 3.51
80 81 1.975327 CACGGATGTGGGAGACAGT 59.025 57.895 0.00 0.00 42.59 3.55
81 82 4.919653 CACGGATGTGGGAGACAG 57.080 61.111 0.00 0.00 42.59 3.51
95 96 1.517257 GGATCAGTCCGCAGACACG 60.517 63.158 2.32 0.00 46.15 4.49
96 97 1.153549 GGGATCAGTCCGCAGACAC 60.154 63.158 2.32 0.00 46.15 3.67
97 98 3.298958 GGGATCAGTCCGCAGACA 58.701 61.111 2.32 0.00 46.15 3.41
103 104 3.866582 GGGCAGGGGATCAGTCCG 61.867 72.222 0.00 0.00 46.09 4.79
104 105 3.866582 CGGGCAGGGGATCAGTCC 61.867 72.222 0.00 0.00 44.29 3.85
105 106 4.554036 GCGGGCAGGGGATCAGTC 62.554 72.222 0.00 0.00 0.00 3.51
115 116 4.240103 TCATCCATCCGCGGGCAG 62.240 66.667 27.83 15.23 0.00 4.85
116 117 4.240103 CTCATCCATCCGCGGGCA 62.240 66.667 27.83 7.28 0.00 5.36
117 118 4.996434 CCTCATCCATCCGCGGGC 62.996 72.222 27.83 0.00 0.00 6.13
118 119 2.721971 CTTCCTCATCCATCCGCGGG 62.722 65.000 27.83 10.29 0.00 6.13
119 120 1.301244 CTTCCTCATCCATCCGCGG 60.301 63.158 22.12 22.12 0.00 6.46
120 121 1.301244 CCTTCCTCATCCATCCGCG 60.301 63.158 0.00 0.00 0.00 6.46
121 122 0.469917 TTCCTTCCTCATCCATCCGC 59.530 55.000 0.00 0.00 0.00 5.54
122 123 3.498774 ATTTCCTTCCTCATCCATCCG 57.501 47.619 0.00 0.00 0.00 4.18
123 124 4.202192 GCAAATTTCCTTCCTCATCCATCC 60.202 45.833 0.00 0.00 0.00 3.51
124 125 4.498682 CGCAAATTTCCTTCCTCATCCATC 60.499 45.833 0.00 0.00 0.00 3.51
125 126 3.382546 CGCAAATTTCCTTCCTCATCCAT 59.617 43.478 0.00 0.00 0.00 3.41
126 127 2.754552 CGCAAATTTCCTTCCTCATCCA 59.245 45.455 0.00 0.00 0.00 3.41
127 128 2.099756 CCGCAAATTTCCTTCCTCATCC 59.900 50.000 0.00 0.00 0.00 3.51
128 129 2.099756 CCCGCAAATTTCCTTCCTCATC 59.900 50.000 0.00 0.00 0.00 2.92
129 130 2.102578 CCCGCAAATTTCCTTCCTCAT 58.897 47.619 0.00 0.00 0.00 2.90
130 131 1.203001 ACCCGCAAATTTCCTTCCTCA 60.203 47.619 0.00 0.00 0.00 3.86
131 132 1.545841 ACCCGCAAATTTCCTTCCTC 58.454 50.000 0.00 0.00 0.00 3.71
132 133 2.009681 AACCCGCAAATTTCCTTCCT 57.990 45.000 0.00 0.00 0.00 3.36
133 134 2.094390 GGTAACCCGCAAATTTCCTTCC 60.094 50.000 0.00 0.00 0.00 3.46
134 135 2.559231 TGGTAACCCGCAAATTTCCTTC 59.441 45.455 0.00 0.00 0.00 3.46
135 136 2.599677 TGGTAACCCGCAAATTTCCTT 58.400 42.857 0.00 0.00 0.00 3.36
136 137 2.296073 TGGTAACCCGCAAATTTCCT 57.704 45.000 0.00 0.00 0.00 3.36
137 138 3.603158 AATGGTAACCCGCAAATTTCC 57.397 42.857 0.00 0.00 0.00 3.13
138 139 6.391537 TCTTTAATGGTAACCCGCAAATTTC 58.608 36.000 0.00 0.00 0.00 2.17
139 140 6.347859 TCTTTAATGGTAACCCGCAAATTT 57.652 33.333 0.00 0.00 0.00 1.82
140 141 5.986501 TCTTTAATGGTAACCCGCAAATT 57.013 34.783 0.00 0.00 0.00 1.82
141 142 5.681179 GCATCTTTAATGGTAACCCGCAAAT 60.681 40.000 0.00 0.00 0.00 2.32
142 143 4.381079 GCATCTTTAATGGTAACCCGCAAA 60.381 41.667 0.00 0.00 0.00 3.68
143 144 3.129638 GCATCTTTAATGGTAACCCGCAA 59.870 43.478 0.00 0.00 0.00 4.85
144 145 2.685897 GCATCTTTAATGGTAACCCGCA 59.314 45.455 0.00 0.00 0.00 5.69
145 146 2.034179 GGCATCTTTAATGGTAACCCGC 59.966 50.000 0.00 0.00 0.00 6.13
146 147 2.621526 GGGCATCTTTAATGGTAACCCG 59.378 50.000 0.00 0.00 0.00 5.28
147 148 2.621526 CGGGCATCTTTAATGGTAACCC 59.378 50.000 0.00 0.00 0.00 4.11
148 149 3.284617 ACGGGCATCTTTAATGGTAACC 58.715 45.455 0.00 0.00 0.00 2.85
149 150 5.121105 ACTACGGGCATCTTTAATGGTAAC 58.879 41.667 0.00 0.00 0.00 2.50
150 151 5.362105 ACTACGGGCATCTTTAATGGTAA 57.638 39.130 0.00 0.00 0.00 2.85
151 152 5.362105 AACTACGGGCATCTTTAATGGTA 57.638 39.130 0.00 0.00 0.00 3.25
152 153 3.926058 ACTACGGGCATCTTTAATGGT 57.074 42.857 0.00 0.00 0.00 3.55
153 154 5.576447 AAAACTACGGGCATCTTTAATGG 57.424 39.130 0.00 0.00 0.00 3.16
154 155 6.386654 ACAAAAACTACGGGCATCTTTAATG 58.613 36.000 0.00 0.00 0.00 1.90
155 156 6.349860 GGACAAAAACTACGGGCATCTTTAAT 60.350 38.462 0.00 0.00 0.00 1.40
156 157 5.048573 GGACAAAAACTACGGGCATCTTTAA 60.049 40.000 0.00 0.00 0.00 1.52
157 158 4.456566 GGACAAAAACTACGGGCATCTTTA 59.543 41.667 0.00 0.00 0.00 1.85
158 159 3.254903 GGACAAAAACTACGGGCATCTTT 59.745 43.478 0.00 0.00 0.00 2.52
159 160 2.817844 GGACAAAAACTACGGGCATCTT 59.182 45.455 0.00 0.00 0.00 2.40
160 161 2.433436 GGACAAAAACTACGGGCATCT 58.567 47.619 0.00 0.00 0.00 2.90
161 162 1.129811 CGGACAAAAACTACGGGCATC 59.870 52.381 0.00 0.00 0.00 3.91
162 163 1.161843 CGGACAAAAACTACGGGCAT 58.838 50.000 0.00 0.00 0.00 4.40
163 164 1.508808 GCGGACAAAAACTACGGGCA 61.509 55.000 0.00 0.00 0.00 5.36
164 165 1.208358 GCGGACAAAAACTACGGGC 59.792 57.895 0.00 0.00 0.00 6.13
165 166 1.161843 ATGCGGACAAAAACTACGGG 58.838 50.000 0.00 0.00 0.00 5.28
166 167 2.981400 AATGCGGACAAAAACTACGG 57.019 45.000 0.00 0.00 0.00 4.02
167 168 3.836348 CGTAAATGCGGACAAAAACTACG 59.164 43.478 0.00 0.00 0.00 3.51
168 169 4.775664 ACGTAAATGCGGACAAAAACTAC 58.224 39.130 0.00 0.00 35.98 2.73
169 170 6.536731 TTACGTAAATGCGGACAAAAACTA 57.463 33.333 5.31 0.00 35.98 2.24
170 171 3.974871 ACGTAAATGCGGACAAAAACT 57.025 38.095 0.00 0.00 35.98 2.66
171 172 5.108292 GGTTTACGTAAATGCGGACAAAAAC 60.108 40.000 22.65 8.37 35.98 2.43
172 173 4.974888 GGTTTACGTAAATGCGGACAAAAA 59.025 37.500 22.65 0.00 35.98 1.94
173 174 4.275443 AGGTTTACGTAAATGCGGACAAAA 59.725 37.500 22.65 0.00 35.98 2.44
174 175 3.814283 AGGTTTACGTAAATGCGGACAAA 59.186 39.130 22.65 0.00 35.98 2.83
175 176 3.401182 AGGTTTACGTAAATGCGGACAA 58.599 40.909 22.65 0.00 35.98 3.18
176 177 2.995258 GAGGTTTACGTAAATGCGGACA 59.005 45.455 22.65 0.00 35.98 4.02
177 178 2.995258 TGAGGTTTACGTAAATGCGGAC 59.005 45.455 22.65 10.12 35.98 4.79
178 179 3.316071 TGAGGTTTACGTAAATGCGGA 57.684 42.857 22.65 5.09 35.98 5.54
179 180 3.425227 GGTTGAGGTTTACGTAAATGCGG 60.425 47.826 22.65 0.00 35.98 5.69
206 207 1.515088 CTCTGCACGACACGCCTAG 60.515 63.158 0.00 0.00 0.00 3.02
208 209 3.559657 GACTCTGCACGACACGCCT 62.560 63.158 0.00 0.00 0.00 5.52
220 221 6.609237 TTCTTTGATTCACTGTTGACTCTG 57.391 37.500 0.00 0.00 33.54 3.35
275 278 0.745486 TGGCTGATGGCTCAATGACG 60.745 55.000 0.00 0.00 41.46 4.35
401 410 4.545208 TCATGTCCCAAGAAACATACGA 57.455 40.909 0.00 0.00 34.42 3.43
432 441 0.578683 CGAGTGCATGGCTAATCACG 59.421 55.000 0.00 0.00 34.84 4.35
442 451 0.729116 GAACCCATGTCGAGTGCATG 59.271 55.000 7.36 7.36 42.29 4.06
443 452 0.324614 TGAACCCATGTCGAGTGCAT 59.675 50.000 0.00 0.00 0.00 3.96
445 454 1.453155 AATGAACCCATGTCGAGTGC 58.547 50.000 0.00 0.00 32.36 4.40
446 455 5.818136 ATAAAATGAACCCATGTCGAGTG 57.182 39.130 0.00 0.00 32.36 3.51
447 456 9.436957 GATATATAAAATGAACCCATGTCGAGT 57.563 33.333 0.00 0.00 32.36 4.18
448 457 9.658799 AGATATATAAAATGAACCCATGTCGAG 57.341 33.333 0.00 0.00 32.36 4.04
449 458 9.653287 GAGATATATAAAATGAACCCATGTCGA 57.347 33.333 0.00 0.00 32.36 4.20
478 487 5.418209 ACCAGCGTACTTCTACTATCTTTGT 59.582 40.000 0.00 0.00 0.00 2.83
612 621 1.614850 GGCGGTTACTTTGGAATGGGA 60.615 52.381 0.00 0.00 0.00 4.37
613 622 0.815095 GGCGGTTACTTTGGAATGGG 59.185 55.000 0.00 0.00 0.00 4.00
614 623 1.834188 AGGCGGTTACTTTGGAATGG 58.166 50.000 0.00 0.00 0.00 3.16
615 624 2.671070 GCAAGGCGGTTACTTTGGAATG 60.671 50.000 0.00 0.00 0.00 2.67
616 625 1.544246 GCAAGGCGGTTACTTTGGAAT 59.456 47.619 0.00 0.00 0.00 3.01
759 778 2.100631 ATTGACTCGCGCCTTTCGG 61.101 57.895 0.00 0.00 38.94 4.30
890 915 2.677875 GCTGGCTTTGGGAGTGGG 60.678 66.667 0.00 0.00 0.00 4.61
1320 1358 2.038813 TCGGTGAGGGAGATGGCA 59.961 61.111 0.00 0.00 0.00 4.92
1566 1616 0.036010 AGCCTGGTTTCCTCACATCG 60.036 55.000 0.00 0.00 0.00 3.84
1574 1624 2.409870 CCATCGCAGCCTGGTTTCC 61.410 63.158 0.00 0.00 0.00 3.13
1590 1640 1.912220 CACGCCCTTAATCCCTCCA 59.088 57.895 0.00 0.00 0.00 3.86
1743 1793 0.618458 CCGGGTCTCCAAAATCAGGA 59.382 55.000 0.00 0.00 0.00 3.86
1848 1898 3.114065 GTTTGTCGTGGATATCGAGGAC 58.886 50.000 24.99 24.99 39.06 3.85
2023 2073 7.505923 ACCAGCATATAAGGAACTAATTTTCCC 59.494 37.037 5.45 0.00 45.65 3.97
2069 2122 6.454848 CGAACATAGCAAGTTGAGCTCTTAAG 60.455 42.308 16.19 0.00 42.32 1.85
2172 2268 4.816385 GCTAGGCATCTGTATTTTGCTACA 59.184 41.667 0.00 0.00 36.62 2.74
2201 2297 1.702957 TCATTTTGGGACGGAGGAAGT 59.297 47.619 0.00 0.00 0.00 3.01
2202 2298 2.359900 CTCATTTTGGGACGGAGGAAG 58.640 52.381 0.00 0.00 0.00 3.46
2203 2299 1.613255 GCTCATTTTGGGACGGAGGAA 60.613 52.381 0.00 0.00 0.00 3.36
2204 2300 0.035439 GCTCATTTTGGGACGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
2205 2301 1.369091 CGCTCATTTTGGGACGGAGG 61.369 60.000 0.00 0.00 0.00 4.30
2206 2302 0.673644 ACGCTCATTTTGGGACGGAG 60.674 55.000 0.00 0.00 0.00 4.63
2207 2303 0.672401 GACGCTCATTTTGGGACGGA 60.672 55.000 0.00 0.00 0.00 4.69
2208 2304 0.673644 AGACGCTCATTTTGGGACGG 60.674 55.000 0.00 0.00 0.00 4.79
2209 2305 0.721718 GAGACGCTCATTTTGGGACG 59.278 55.000 2.53 0.00 0.00 4.79
2210 2306 1.808411 TGAGACGCTCATTTTGGGAC 58.192 50.000 5.59 0.00 35.39 4.46
2211 2307 2.151202 GTTGAGACGCTCATTTTGGGA 58.849 47.619 9.78 0.00 40.39 4.37
2212 2308 2.154462 AGTTGAGACGCTCATTTTGGG 58.846 47.619 9.78 0.00 40.39 4.12
2213 2309 3.904136 AAGTTGAGACGCTCATTTTGG 57.096 42.857 9.78 0.00 40.39 3.28
2214 2310 4.601019 ACAAAGTTGAGACGCTCATTTTG 58.399 39.130 24.82 24.82 43.24 2.44
2215 2311 4.900635 ACAAAGTTGAGACGCTCATTTT 57.099 36.364 9.78 10.42 40.39 1.82
2216 2312 5.057149 AGTACAAAGTTGAGACGCTCATTT 58.943 37.500 9.78 6.53 40.39 2.32
2217 2313 4.632153 AGTACAAAGTTGAGACGCTCATT 58.368 39.130 9.78 1.39 40.39 2.57
2218 2314 4.258702 AGTACAAAGTTGAGACGCTCAT 57.741 40.909 9.78 0.00 40.39 2.90
2219 2315 3.728076 AGTACAAAGTTGAGACGCTCA 57.272 42.857 5.59 5.59 38.87 4.26
2220 2316 5.690857 ACTTTAGTACAAAGTTGAGACGCTC 59.309 40.000 14.04 0.58 37.18 5.03
2221 2317 5.598769 ACTTTAGTACAAAGTTGAGACGCT 58.401 37.500 14.04 0.00 37.18 5.07
2222 2318 5.902051 ACTTTAGTACAAAGTTGAGACGC 57.098 39.130 14.04 0.00 37.18 5.19
2223 2319 8.571461 ACTAACTTTAGTACAAAGTTGAGACG 57.429 34.615 27.85 18.93 46.41 4.18
2249 2345 9.097946 AGTGTCTTAACCCTAGTATAACTTTGT 57.902 33.333 0.00 0.00 0.00 2.83
2250 2346 9.939802 AAGTGTCTTAACCCTAGTATAACTTTG 57.060 33.333 0.00 0.00 0.00 2.77
2257 2353 9.901172 CCAAAATAAGTGTCTTAACCCTAGTAT 57.099 33.333 0.00 0.00 0.00 2.12
2258 2354 8.323567 CCCAAAATAAGTGTCTTAACCCTAGTA 58.676 37.037 0.00 0.00 0.00 1.82
2259 2355 7.017850 TCCCAAAATAAGTGTCTTAACCCTAGT 59.982 37.037 0.00 0.00 0.00 2.57
2260 2356 7.336176 GTCCCAAAATAAGTGTCTTAACCCTAG 59.664 40.741 0.00 0.00 0.00 3.02
2261 2357 7.170277 GTCCCAAAATAAGTGTCTTAACCCTA 58.830 38.462 0.00 0.00 0.00 3.53
2262 2358 6.008331 GTCCCAAAATAAGTGTCTTAACCCT 58.992 40.000 0.00 0.00 0.00 4.34
2263 2359 5.106436 CGTCCCAAAATAAGTGTCTTAACCC 60.106 44.000 0.00 0.00 0.00 4.11
2264 2360 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
2265 2361 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
2266 2362 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
2267 2363 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
2268 2364 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2269 2365 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2270 2366 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2271 2367 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2272 2368 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2273 2369 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2274 2370 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2275 2371 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2276 2372 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2277 2373 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
2278 2374 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2279 2375 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2280 2376 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2281 2377 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2282 2378 2.149973 TTTACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
2283 2379 4.468713 ACTATTTACTACTCCCTCCGTCC 58.531 47.826 0.00 0.00 0.00 4.79
2284 2380 7.757941 ATTACTATTTACTACTCCCTCCGTC 57.242 40.000 0.00 0.00 0.00 4.79
2285 2381 7.781693 TCAATTACTATTTACTACTCCCTCCGT 59.218 37.037 0.00 0.00 0.00 4.69
2286 2382 8.174733 TCAATTACTATTTACTACTCCCTCCG 57.825 38.462 0.00 0.00 0.00 4.63
2402 2498 8.423906 TCATATTCCCCTGTATTCTAGAGAAC 57.576 38.462 0.00 0.00 36.80 3.01
2437 2533 2.686235 TGCAGTGCAATATTTTGGCAC 58.314 42.857 17.26 17.36 38.77 5.01
2466 2562 9.607988 ATTACGAATACCACATAATTCAGAACA 57.392 29.630 0.00 0.00 32.70 3.18
2488 2587 8.237267 CCGGAAGCTGAATATCCATTTTATTAC 58.763 37.037 0.00 0.00 32.58 1.89
2759 2858 5.530712 AGAAGTCGTAAAAGACAAGGTCTC 58.469 41.667 0.00 0.00 42.59 3.36
2921 3022 4.697352 AGTAATGCACAACTGGAAGATCAC 59.303 41.667 2.08 0.00 37.43 3.06
3040 3141 3.952323 TGTATAGTTTCGAGTCCTCCTGG 59.048 47.826 0.00 0.00 0.00 4.45
3058 3159 6.127026 GGGTCACTAGTTCAAGGAAGATGTAT 60.127 42.308 0.00 0.00 0.00 2.29
3272 3373 3.319122 GGCAAGACAAAAACCAGTGATCT 59.681 43.478 0.00 0.00 0.00 2.75
3273 3374 3.319122 AGGCAAGACAAAAACCAGTGATC 59.681 43.478 0.00 0.00 0.00 2.92
3274 3375 3.299503 AGGCAAGACAAAAACCAGTGAT 58.700 40.909 0.00 0.00 0.00 3.06
3275 3376 2.733956 AGGCAAGACAAAAACCAGTGA 58.266 42.857 0.00 0.00 0.00 3.41
3430 3613 0.662619 CAAAGTCCGCAAGCTTCACA 59.337 50.000 0.00 0.00 0.00 3.58
3499 3682 7.876068 TGGATAACTACATTCGAAGTTCAAACT 59.124 33.333 3.35 0.00 42.04 2.66
3662 3845 3.448686 ACAAGCGAATTCGAGACTATGG 58.551 45.455 31.01 13.31 43.02 2.74
3738 3921 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3739 3922 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3740 3923 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3741 3924 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3742 3925 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3743 3926 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3744 3927 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3789 3972 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
3790 3973 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
3791 3974 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
3792 3975 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
3793 3976 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
3799 3982 9.490083 ACTACTACTCCCTCTGTAAACAAATAT 57.510 33.333 0.00 0.00 0.00 1.28
3800 3983 8.890410 ACTACTACTCCCTCTGTAAACAAATA 57.110 34.615 0.00 0.00 0.00 1.40
3801 3984 7.793948 ACTACTACTCCCTCTGTAAACAAAT 57.206 36.000 0.00 0.00 0.00 2.32
3802 3985 8.890410 ATACTACTACTCCCTCTGTAAACAAA 57.110 34.615 0.00 0.00 0.00 2.83
3803 3986 9.979897 TTATACTACTACTCCCTCTGTAAACAA 57.020 33.333 0.00 0.00 0.00 2.83
3806 3989 9.804977 GGATTATACTACTACTCCCTCTGTAAA 57.195 37.037 0.00 0.00 0.00 2.01
3807 3990 9.180282 AGGATTATACTACTACTCCCTCTGTAA 57.820 37.037 0.00 0.00 0.00 2.41
3808 3991 8.604184 CAGGATTATACTACTACTCCCTCTGTA 58.396 40.741 0.00 0.00 0.00 2.74
3809 3992 7.295196 TCAGGATTATACTACTACTCCCTCTGT 59.705 40.741 0.00 0.00 0.00 3.41
3810 3993 7.691213 TCAGGATTATACTACTACTCCCTCTG 58.309 42.308 0.00 0.00 0.00 3.35
3811 3994 7.037153 CCTCAGGATTATACTACTACTCCCTCT 60.037 44.444 0.00 0.00 0.00 3.69
3812 3995 7.114095 CCTCAGGATTATACTACTACTCCCTC 58.886 46.154 0.00 0.00 0.00 4.30
3813 3996 6.567260 ACCTCAGGATTATACTACTACTCCCT 59.433 42.308 0.00 0.00 0.00 4.20
3814 3997 6.792424 ACCTCAGGATTATACTACTACTCCC 58.208 44.000 0.00 0.00 0.00 4.30
3815 3998 9.804977 TTTACCTCAGGATTATACTACTACTCC 57.195 37.037 0.00 0.00 0.00 3.85
3817 4000 9.810870 CCTTTACCTCAGGATTATACTACTACT 57.189 37.037 0.00 0.00 32.41 2.57
3818 4001 9.022884 CCCTTTACCTCAGGATTATACTACTAC 57.977 40.741 0.00 0.00 32.41 2.73
3819 4002 8.175431 CCCCTTTACCTCAGGATTATACTACTA 58.825 40.741 0.00 0.00 32.41 1.82
3820 4003 7.017531 CCCCTTTACCTCAGGATTATACTACT 58.982 42.308 0.00 0.00 32.41 2.57
3854 4037 4.728608 GCACACAACTCTTAACACTTTTCG 59.271 41.667 0.00 0.00 0.00 3.46
3902 4086 7.042051 GCTAACTGAACTGATGTAGTGTGAAAA 60.042 37.037 0.00 0.00 40.26 2.29
3905 4089 5.243954 AGCTAACTGAACTGATGTAGTGTGA 59.756 40.000 0.00 0.00 40.26 3.58
3974 4158 7.531529 TGTGAACTACAAGCGCAATAGTTGC 62.532 44.000 26.03 19.94 44.13 4.17
3985 4169 5.465390 TCAACATACAGTGTGAACTACAAGC 59.535 40.000 5.88 0.00 41.14 4.01
4060 4244 7.856398 CAGCAAATAAAGAACATAGAGCATCAG 59.144 37.037 0.00 0.00 37.82 2.90
4063 4247 6.501781 GCAGCAAATAAAGAACATAGAGCAT 58.498 36.000 0.00 0.00 0.00 3.79
4166 4351 8.946085 GTTCAGTGTGTCCATTTAGAATAATCA 58.054 33.333 0.00 0.00 0.00 2.57
4382 4571 7.220740 TCATAAATTACACACACAAGAGACCA 58.779 34.615 0.00 0.00 0.00 4.02
4425 4614 0.675633 AGTTGCAAGAATGGGTGTGC 59.324 50.000 0.00 0.00 37.51 4.57
4619 4808 9.044150 GTATATGTCCTCATAGACCGTATAGAC 57.956 40.741 2.75 0.00 40.66 2.59
4631 4820 3.502356 TGGGCGTGTATATGTCCTCATA 58.498 45.455 3.82 0.00 38.45 2.15
4672 4861 2.103373 GTCCACAGCTCTATCCACTCA 58.897 52.381 0.00 0.00 0.00 3.41
4676 4865 2.497675 GAGTTGTCCACAGCTCTATCCA 59.502 50.000 14.43 0.00 46.44 3.41
4810 4999 4.384247 GCAGATAGAATAAGCAGCACTACG 59.616 45.833 0.00 0.00 0.00 3.51
4847 5036 3.041211 AGCCAGCTCCACATGATTAGTA 58.959 45.455 0.00 0.00 0.00 1.82
4990 5184 1.625315 ACACTAGGCTCAGATGCACAA 59.375 47.619 0.00 0.00 34.04 3.33
5062 5256 4.274978 TCATTCAGCACCATGACATTGAT 58.725 39.130 0.00 0.00 0.00 2.57
5159 5360 5.927819 AGCAATCCAAACAATTCAAAAGGA 58.072 33.333 0.00 0.00 0.00 3.36
5166 5367 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
5167 5368 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
5424 5630 2.861935 CACAAAGAAACAAAGCAGGCAG 59.138 45.455 0.00 0.00 0.00 4.85
5449 5656 4.403453 GACTTGTACACGGCATTGATTTC 58.597 43.478 0.00 0.00 0.00 2.17
5490 5697 9.088512 GAGACTTACTTATGGTTGAACTGTATG 57.911 37.037 0.00 0.00 0.00 2.39
5508 5715 5.408356 TCTTAACAGAATGGCGAGACTTAC 58.592 41.667 0.00 0.00 43.62 2.34
5604 5812 1.270625 TGCTTTCTACACCTGGGAACG 60.271 52.381 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.