Multiple sequence alignment - TraesCS4D01G216800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G216800 chr4D 100.000 5420 0 0 1 5420 371130521 371135940 0.000000e+00 10009.0
1 TraesCS4D01G216800 chr4D 86.702 188 22 3 2227 2413 482705731 482705546 7.120000e-49 206.0
2 TraesCS4D01G216800 chr4D 89.691 97 8 2 5146 5241 336131559 336131464 7.370000e-24 122.0
3 TraesCS4D01G216800 chr4B 93.399 2621 100 24 2268 4823 456349860 456352472 0.000000e+00 3814.0
4 TraesCS4D01G216800 chr4B 97.704 784 14 4 858 1640 456346892 456347672 0.000000e+00 1345.0
5 TraesCS4D01G216800 chr4B 90.599 851 62 7 1 849 456345299 456346133 0.000000e+00 1112.0
6 TraesCS4D01G216800 chr4B 95.064 547 19 3 1732 2272 456347676 456348220 0.000000e+00 854.0
7 TraesCS4D01G216800 chr4B 91.026 234 12 8 4896 5127 456360781 456361007 1.900000e-79 307.0
8 TraesCS4D01G216800 chr4B 91.045 67 4 2 5176 5241 13079019 13078954 7.480000e-14 89.8
9 TraesCS4D01G216800 chr4A 94.278 1573 55 13 3828 5379 92742693 92741135 0.000000e+00 2374.0
10 TraesCS4D01G216800 chr4A 91.851 1669 108 18 1 1656 92746801 92745148 0.000000e+00 2303.0
11 TraesCS4D01G216800 chr4A 91.541 993 52 23 2866 3842 92743685 92742709 0.000000e+00 1339.0
12 TraesCS4D01G216800 chr4A 93.829 713 28 9 1656 2362 92745216 92744514 0.000000e+00 1059.0
13 TraesCS4D01G216800 chr4A 94.531 512 19 4 2349 2855 92744353 92743846 0.000000e+00 782.0
14 TraesCS4D01G216800 chr4A 80.423 189 31 6 1 185 603515510 603515324 7.320000e-29 139.0
15 TraesCS4D01G216800 chr5D 95.000 160 4 4 5241 5399 48669121 48668965 1.170000e-61 248.0
16 TraesCS4D01G216800 chr5D 91.765 170 10 4 5241 5409 524486422 524486256 3.260000e-57 233.0
17 TraesCS4D01G216800 chr5D 78.646 192 34 6 1 187 107794890 107794701 2.650000e-23 121.0
18 TraesCS4D01G216800 chr1D 93.373 166 7 4 5238 5402 458805383 458805545 5.420000e-60 243.0
19 TraesCS4D01G216800 chr7D 93.373 166 6 5 5238 5402 237158615 237158776 1.950000e-59 241.0
20 TraesCS4D01G216800 chr7D 80.645 186 33 3 1 185 241611907 241611724 2.040000e-29 141.0
21 TraesCS4D01G216800 chr7D 83.206 131 20 2 1 130 95693334 95693205 9.540000e-23 119.0
22 TraesCS4D01G216800 chr3A 93.827 162 6 4 5238 5398 549427806 549427648 1.950000e-59 241.0
23 TraesCS4D01G216800 chr3A 83.929 168 21 3 2340 2506 552785404 552785566 7.270000e-34 156.0
24 TraesCS4D01G216800 chr2D 93.789 161 6 4 5241 5400 445189981 445189824 7.020000e-59 239.0
25 TraesCS4D01G216800 chr2D 91.011 178 9 7 5238 5414 609886797 609886968 3.260000e-57 233.0
26 TraesCS4D01G216800 chr2B 91.765 170 10 4 5241 5409 519599016 519598850 3.260000e-57 233.0
27 TraesCS4D01G216800 chr2B 85.093 161 21 3 20 179 6113465 6113623 1.560000e-35 161.0
28 TraesCS4D01G216800 chr2B 89.130 92 8 2 5150 5241 657302401 657302490 4.440000e-21 113.0
29 TraesCS4D01G216800 chr6D 86.957 184 23 1 2 185 428074405 428074223 7.120000e-49 206.0
30 TraesCS4D01G216800 chr5A 86.170 188 23 3 2227 2413 659865385 659865570 3.310000e-47 200.0
31 TraesCS4D01G216800 chr5A 78.114 297 47 15 2227 2517 337943837 337943553 7.220000e-39 172.0
32 TraesCS4D01G216800 chr5B 81.166 223 26 10 535 754 669287703 669287912 1.210000e-36 165.0
33 TraesCS4D01G216800 chr5B 88.462 52 6 0 5158 5209 520902464 520902413 4.530000e-06 63.9
34 TraesCS4D01G216800 chr7B 77.941 272 37 9 2251 2519 513715819 513716070 1.220000e-31 148.0
35 TraesCS4D01G216800 chr7B 83.582 134 18 3 55 185 477628824 477628956 7.370000e-24 122.0
36 TraesCS4D01G216800 chr3B 88.421 95 9 2 5146 5240 142248138 142248230 4.440000e-21 113.0
37 TraesCS4D01G216800 chr3B 87.719 57 7 0 5147 5203 581906193 581906249 3.500000e-07 67.6
38 TraesCS4D01G216800 chr6A 91.139 79 7 0 5146 5224 595653496 595653574 2.060000e-19 108.0
39 TraesCS4D01G216800 chr1A 81.553 103 14 3 5147 5245 276652583 276652684 4.500000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G216800 chr4D 371130521 371135940 5419 False 10009.00 10009 100.0000 1 5420 1 chr4D.!!$F1 5419
1 TraesCS4D01G216800 chr4B 456345299 456352472 7173 False 1781.25 3814 94.1915 1 4823 4 chr4B.!!$F2 4822
2 TraesCS4D01G216800 chr4A 92741135 92746801 5666 True 1571.40 2374 93.2060 1 5379 5 chr4A.!!$R2 5378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.245539 CTTCCTTTCGGGTACGCTCA 59.754 55.0 8.43 0.00 40.69 4.26 F
600 602 0.309302 CGACAGTGGAGGAGCTATCG 59.691 60.0 0.00 0.00 0.00 2.92 F
1204 1965 0.319641 CCGCCGCTAGATCTAAACCC 60.320 60.0 3.57 0.00 0.00 4.11 F
1676 2438 0.662619 TTGCTCGGAACAAGCTGTTG 59.337 50.0 6.31 0.00 41.28 3.33 F
1697 2459 0.736636 TTCGTCAGTCGTGTCTGTGT 59.263 50.0 0.00 0.00 40.80 3.72 F
2800 5394 0.323178 AGCCTTCCAAGATGCACTGG 60.323 55.0 5.17 5.17 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 2420 0.463654 ACAACAGCTTGTTCCGAGCA 60.464 50.000 6.27 0.0 42.91 4.26 R
1659 2421 0.663153 AACAACAGCTTGTTCCGAGC 59.337 50.000 0.00 0.0 45.81 5.03 R
2238 3009 1.553704 CCACCACCACTACTAACTCCC 59.446 57.143 0.00 0.0 0.00 4.30 R
2800 5394 1.792949 CAGTCAACTGTAACCGCAGAC 59.207 52.381 1.88 0.0 39.62 3.51 R
3626 6393 2.068837 AAATTGCTGTGAATGTGGCG 57.931 45.000 0.00 0.0 0.00 5.69 R
4587 7420 2.764010 AGTCGACCAATACAGGCATACA 59.236 45.455 13.01 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.863965 TCACATGAACTTTGTACTCCATCA 58.136 37.500 0.00 0.00 0.00 3.07
73 74 5.775701 GCAGGAGTAGGGTATTATCTCTTCA 59.224 44.000 0.00 0.00 0.00 3.02
88 89 0.401738 CTTCAAGAGGGCCTGAACCA 59.598 55.000 12.95 0.00 0.00 3.67
232 233 0.888736 CCATAATTGCGCCATCCCGA 60.889 55.000 4.18 0.00 0.00 5.14
279 280 2.334946 GGCTTTCTCATGTGCGGCA 61.335 57.895 0.00 0.00 0.00 5.69
296 297 0.391263 GCATCGTCTTCCTTTCGGGT 60.391 55.000 0.00 0.00 36.25 5.28
297 298 1.134907 GCATCGTCTTCCTTTCGGGTA 60.135 52.381 0.00 0.00 36.25 3.69
303 304 0.245539 CTTCCTTTCGGGTACGCTCA 59.754 55.000 8.43 0.00 40.69 4.26
337 338 1.030457 GGCTTTCCATGCCTCATCTG 58.970 55.000 0.00 0.00 46.38 2.90
372 373 2.561419 CTCGACCAGGGTAGTTTTCTCA 59.439 50.000 0.00 0.00 0.00 3.27
376 377 1.351017 CCAGGGTAGTTTTCTCAGCCA 59.649 52.381 0.00 0.00 32.14 4.75
389 390 2.039480 TCTCAGCCAACAAATCAGCTCT 59.961 45.455 0.00 0.00 31.93 4.09
434 435 2.448453 CACCTCGAAGAAGTCCCTAGT 58.552 52.381 0.00 0.00 34.09 2.57
480 482 5.120053 CCCGGTTGCAAAATCATAGTTTTTC 59.880 40.000 0.00 0.00 0.00 2.29
503 505 0.824109 TGCATTAGGTCGTAGCAGCT 59.176 50.000 0.00 0.00 0.00 4.24
572 574 3.654806 CCATGATAGGGAGAAGGTTGGAT 59.345 47.826 0.00 0.00 0.00 3.41
600 602 0.309302 CGACAGTGGAGGAGCTATCG 59.691 60.000 0.00 0.00 0.00 2.92
681 684 5.427157 GGAGAGAGAAAGGAAAGGGATAAGT 59.573 44.000 0.00 0.00 0.00 2.24
707 710 4.813526 CGAGAGCACGGGTCGTCG 62.814 72.222 0.00 0.00 38.32 5.12
799 802 5.806502 CGTAGTGAATCGTTTACCATGGTAA 59.193 40.000 29.65 29.65 38.63 2.85
800 803 6.310956 CGTAGTGAATCGTTTACCATGGTAAA 59.689 38.462 35.78 35.78 45.02 2.01
1204 1965 0.319641 CCGCCGCTAGATCTAAACCC 60.320 60.000 3.57 0.00 0.00 4.11
1271 2033 2.152016 GAAAGCCGGATGTAATAGCCC 58.848 52.381 5.05 0.00 0.00 5.19
1357 2119 2.915463 GTCGTACGAGGACAACATCAAG 59.085 50.000 20.18 0.00 33.54 3.02
1413 2175 2.233271 CACAGCAGATTGTTTCCAGGT 58.767 47.619 0.00 0.00 0.00 4.00
1414 2176 2.624838 CACAGCAGATTGTTTCCAGGTT 59.375 45.455 0.00 0.00 0.00 3.50
1642 2404 4.748102 CGTGTCTGTGTTTAGTATTGGTGT 59.252 41.667 0.00 0.00 0.00 4.16
1643 2405 5.107607 CGTGTCTGTGTTTAGTATTGGTGTC 60.108 44.000 0.00 0.00 0.00 3.67
1644 2406 5.756347 GTGTCTGTGTTTAGTATTGGTGTCA 59.244 40.000 0.00 0.00 0.00 3.58
1645 2407 6.426937 GTGTCTGTGTTTAGTATTGGTGTCAT 59.573 38.462 0.00 0.00 0.00 3.06
1646 2408 6.426633 TGTCTGTGTTTAGTATTGGTGTCATG 59.573 38.462 0.00 0.00 0.00 3.07
1647 2409 6.426937 GTCTGTGTTTAGTATTGGTGTCATGT 59.573 38.462 0.00 0.00 0.00 3.21
1648 2410 6.649141 TCTGTGTTTAGTATTGGTGTCATGTC 59.351 38.462 0.00 0.00 0.00 3.06
1649 2411 6.530120 TGTGTTTAGTATTGGTGTCATGTCT 58.470 36.000 0.00 0.00 0.00 3.41
1650 2412 7.672240 TGTGTTTAGTATTGGTGTCATGTCTA 58.328 34.615 0.00 0.00 0.00 2.59
1651 2413 8.318412 TGTGTTTAGTATTGGTGTCATGTCTAT 58.682 33.333 0.00 0.00 0.00 1.98
1652 2414 8.818057 GTGTTTAGTATTGGTGTCATGTCTATC 58.182 37.037 0.00 0.00 0.00 2.08
1653 2415 7.985184 TGTTTAGTATTGGTGTCATGTCTATCC 59.015 37.037 0.00 0.00 0.00 2.59
1654 2416 7.669089 TTAGTATTGGTGTCATGTCTATCCA 57.331 36.000 0.00 0.00 0.00 3.41
1655 2417 6.753913 AGTATTGGTGTCATGTCTATCCAT 57.246 37.500 0.00 0.00 0.00 3.41
1656 2418 7.855784 AGTATTGGTGTCATGTCTATCCATA 57.144 36.000 0.00 0.00 0.00 2.74
1657 2419 8.441311 AGTATTGGTGTCATGTCTATCCATAT 57.559 34.615 0.00 0.00 0.00 1.78
1658 2420 8.884323 AGTATTGGTGTCATGTCTATCCATATT 58.116 33.333 0.00 0.00 0.00 1.28
1659 2421 7.991084 ATTGGTGTCATGTCTATCCATATTG 57.009 36.000 0.00 0.00 0.00 1.90
1660 2422 5.308014 TGGTGTCATGTCTATCCATATTGC 58.692 41.667 0.00 0.00 0.00 3.56
1661 2423 5.072193 TGGTGTCATGTCTATCCATATTGCT 59.928 40.000 0.00 0.00 0.00 3.91
1662 2424 5.641209 GGTGTCATGTCTATCCATATTGCTC 59.359 44.000 0.00 0.00 0.00 4.26
1663 2425 5.347093 GTGTCATGTCTATCCATATTGCTCG 59.653 44.000 0.00 0.00 0.00 5.03
1664 2426 4.867047 GTCATGTCTATCCATATTGCTCGG 59.133 45.833 0.00 0.00 0.00 4.63
1665 2427 4.772100 TCATGTCTATCCATATTGCTCGGA 59.228 41.667 0.00 0.00 0.00 4.55
1666 2428 5.245977 TCATGTCTATCCATATTGCTCGGAA 59.754 40.000 0.00 0.00 31.18 4.30
1667 2429 4.883083 TGTCTATCCATATTGCTCGGAAC 58.117 43.478 0.00 0.00 31.18 3.62
1668 2430 4.343814 TGTCTATCCATATTGCTCGGAACA 59.656 41.667 0.00 0.00 31.18 3.18
1669 2431 5.163353 TGTCTATCCATATTGCTCGGAACAA 60.163 40.000 0.00 0.00 31.18 2.83
1670 2432 5.406780 GTCTATCCATATTGCTCGGAACAAG 59.593 44.000 0.05 0.00 31.18 3.16
1671 2433 2.288666 TCCATATTGCTCGGAACAAGC 58.711 47.619 0.05 0.00 0.00 4.01
1672 2434 2.092968 TCCATATTGCTCGGAACAAGCT 60.093 45.455 0.05 0.00 0.00 3.74
1673 2435 2.032550 CCATATTGCTCGGAACAAGCTG 59.967 50.000 0.05 0.61 0.00 4.24
1674 2436 2.472695 TATTGCTCGGAACAAGCTGT 57.527 45.000 0.05 0.00 0.00 4.40
1675 2437 1.609208 ATTGCTCGGAACAAGCTGTT 58.391 45.000 0.05 0.00 44.37 3.16
1676 2438 0.662619 TTGCTCGGAACAAGCTGTTG 59.337 50.000 6.31 0.00 41.28 3.33
1686 2448 2.356135 ACAAGCTGTTGTTTCGTCAGT 58.644 42.857 0.00 0.00 45.00 3.41
1687 2449 2.351726 ACAAGCTGTTGTTTCGTCAGTC 59.648 45.455 0.00 0.00 45.00 3.51
1688 2450 1.209128 AGCTGTTGTTTCGTCAGTCG 58.791 50.000 0.00 0.00 41.41 4.18
1689 2451 0.928229 GCTGTTGTTTCGTCAGTCGT 59.072 50.000 0.00 0.00 40.80 4.34
1690 2452 1.332028 GCTGTTGTTTCGTCAGTCGTG 60.332 52.381 0.00 0.00 40.80 4.35
1691 2453 1.924524 CTGTTGTTTCGTCAGTCGTGT 59.075 47.619 0.00 0.00 40.80 4.49
1692 2454 1.921887 TGTTGTTTCGTCAGTCGTGTC 59.078 47.619 0.00 0.00 40.80 3.67
1693 2455 2.190981 GTTGTTTCGTCAGTCGTGTCT 58.809 47.619 0.00 0.00 40.80 3.41
1694 2456 1.835121 TGTTTCGTCAGTCGTGTCTG 58.165 50.000 0.00 0.00 40.80 3.51
1695 2457 1.133598 TGTTTCGTCAGTCGTGTCTGT 59.866 47.619 0.00 0.00 40.80 3.41
1696 2458 1.517276 GTTTCGTCAGTCGTGTCTGTG 59.483 52.381 0.00 0.00 40.80 3.66
1697 2459 0.736636 TTCGTCAGTCGTGTCTGTGT 59.263 50.000 0.00 0.00 40.80 3.72
1698 2460 0.736636 TCGTCAGTCGTGTCTGTGTT 59.263 50.000 0.00 0.00 40.80 3.32
1699 2461 1.133598 TCGTCAGTCGTGTCTGTGTTT 59.866 47.619 0.00 0.00 40.80 2.83
1700 2462 2.355444 TCGTCAGTCGTGTCTGTGTTTA 59.645 45.455 0.00 0.00 40.80 2.01
1701 2463 2.719556 CGTCAGTCGTGTCTGTGTTTAG 59.280 50.000 0.00 0.00 36.85 1.85
1702 2464 3.703420 GTCAGTCGTGTCTGTGTTTAGT 58.297 45.455 0.00 0.00 36.85 2.24
1703 2465 4.553351 CGTCAGTCGTGTCTGTGTTTAGTA 60.553 45.833 0.00 0.00 36.85 1.82
1704 2466 5.458891 GTCAGTCGTGTCTGTGTTTAGTAT 58.541 41.667 0.00 0.00 36.85 2.12
1705 2467 5.919141 GTCAGTCGTGTCTGTGTTTAGTATT 59.081 40.000 0.00 0.00 36.85 1.89
1706 2468 5.918576 TCAGTCGTGTCTGTGTTTAGTATTG 59.081 40.000 0.00 0.00 36.85 1.90
1707 2469 5.118664 CAGTCGTGTCTGTGTTTAGTATTGG 59.881 44.000 0.00 0.00 0.00 3.16
1708 2470 4.986659 GTCGTGTCTGTGTTTAGTATTGGT 59.013 41.667 0.00 0.00 0.00 3.67
1709 2471 6.016024 AGTCGTGTCTGTGTTTAGTATTGGTA 60.016 38.462 0.00 0.00 0.00 3.25
1710 2472 6.810182 GTCGTGTCTGTGTTTAGTATTGGTAT 59.190 38.462 0.00 0.00 0.00 2.73
1711 2473 7.970061 GTCGTGTCTGTGTTTAGTATTGGTATA 59.030 37.037 0.00 0.00 0.00 1.47
1971 2736 5.838531 AGTACACAGTAGCCTACTTGATC 57.161 43.478 16.04 10.38 36.76 2.92
1976 2741 4.344978 ACAGTAGCCTACTTGATCTGTGA 58.655 43.478 0.46 0.00 36.76 3.58
2036 2804 7.475771 TGTTTTTATTTTGTTCATGACTGGC 57.524 32.000 0.00 0.00 0.00 4.85
2057 2825 6.578023 TGGCCTTTAATTGCATTATAACCAC 58.422 36.000 3.32 0.00 0.00 4.16
2111 2879 4.871993 ATATTTCACTGCTCAAGCGAAG 57.128 40.909 0.00 0.00 45.83 3.79
2173 2941 7.767198 CCTTGTTCCGTTTATAGAGTGGAATTA 59.233 37.037 0.00 0.00 40.54 1.40
2175 2943 9.675464 TTGTTCCGTTTATAGAGTGGAATTATT 57.325 29.630 0.00 0.00 40.54 1.40
2261 3032 1.975680 AGTTAGTAGTGGTGGTGGTGG 59.024 52.381 0.00 0.00 0.00 4.61
2266 3037 1.420532 TAGTGGTGGTGGTGGGTTCC 61.421 60.000 0.00 0.00 0.00 3.62
2283 4698 4.354943 CCTCCCCCACTCCACCCT 62.355 72.222 0.00 0.00 0.00 4.34
2328 4743 2.381911 CATGAGACCCCTCCAATTTGG 58.618 52.381 9.28 9.28 38.66 3.28
2359 4948 4.605640 AAAACATAGCTTGCAATGGTGT 57.394 36.364 0.00 0.19 0.00 4.16
2457 5051 7.223971 CACGTGCATTGGTTGTTATATACTACT 59.776 37.037 0.82 0.00 33.68 2.57
2458 5052 8.415553 ACGTGCATTGGTTGTTATATACTACTA 58.584 33.333 0.00 0.00 33.68 1.82
2459 5053 9.251792 CGTGCATTGGTTGTTATATACTACTAA 57.748 33.333 0.00 0.00 37.36 2.24
2655 5249 1.198759 GGTCTGGCTCCCTGTTACCA 61.199 60.000 0.00 0.00 0.00 3.25
2662 5256 1.207329 GCTCCCTGTTACCAGTACCAG 59.793 57.143 0.00 0.00 36.95 4.00
2773 5367 5.882557 AGAAGTTGACGCTGATCCATAAATT 59.117 36.000 0.00 0.00 0.00 1.82
2800 5394 0.323178 AGCCTTCCAAGATGCACTGG 60.323 55.000 5.17 5.17 0.00 4.00
3157 5904 4.278310 ACAAAACCTTTGGCTCTGTAACT 58.722 39.130 4.30 0.00 0.00 2.24
3184 5931 0.758685 TGTTTGCCTTGGGAAGTGGG 60.759 55.000 0.00 0.00 0.00 4.61
3217 5964 4.560136 TGTGCTGCATTAAAAACGAAGA 57.440 36.364 5.27 0.00 0.00 2.87
3289 6038 1.409241 CCCATCCCACACTCTTCATGG 60.409 57.143 0.00 0.00 0.00 3.66
3615 6382 6.550938 TCTTCTTTTCTCTATCATGCCTGA 57.449 37.500 0.00 0.00 35.41 3.86
3626 6393 3.829886 TCATGCCTGATTTTCGTTGAC 57.170 42.857 0.00 0.00 0.00 3.18
3643 6410 0.523072 GACGCCACATTCACAGCAAT 59.477 50.000 0.00 0.00 0.00 3.56
3761 6536 2.618709 GTGTGTTCTTGTTTAGGCAGCT 59.381 45.455 0.00 0.00 0.00 4.24
3783 6558 6.950619 AGCTCATTTAGGTTTCCATTTTCTCT 59.049 34.615 0.00 0.00 29.36 3.10
3828 6603 5.973899 TTGCATACTTTTTGATGTGGCTA 57.026 34.783 0.00 0.00 0.00 3.93
3873 6679 1.539157 CAAGGCTTGTCTTCCCCTTC 58.461 55.000 19.07 0.00 35.59 3.46
4104 6910 5.762825 ATAGTGATGATGTTTGTGGCATC 57.237 39.130 0.00 0.00 42.10 3.91
4237 7043 3.006859 TGACTGTGTTATCACCAGTGAGG 59.993 47.826 6.63 0.00 43.61 3.86
4511 7344 2.418368 TCAACCCAGCCATGATGTAC 57.582 50.000 0.00 0.00 0.00 2.90
4583 7416 8.219769 GCTGAAGTATCGACTTTCATGATATTG 58.780 37.037 0.00 0.00 46.23 1.90
4587 7420 4.422073 TCGACTTTCATGATATTGGCCT 57.578 40.909 3.32 0.00 0.00 5.19
4609 7442 3.196901 TGTATGCCTGTATTGGTCGACTT 59.803 43.478 16.46 3.53 0.00 3.01
4699 7542 6.821388 ACATTACAAGTACTCCAGGATGATC 58.179 40.000 0.00 0.00 39.69 2.92
5122 7984 8.333235 TGGAATACTGAGGTTTTACATTACCAT 58.667 33.333 0.00 0.00 36.87 3.55
5146 8008 9.484326 CATGGTTTTAAAAACAGTTTTGCTAAC 57.516 29.630 22.25 14.15 39.27 2.34
5157 8019 4.694339 AGTTTTGCTAACTGAGACTTCGT 58.306 39.130 4.33 0.00 0.00 3.85
5158 8020 5.116882 AGTTTTGCTAACTGAGACTTCGTT 58.883 37.500 4.33 0.00 0.00 3.85
5159 8021 6.278363 AGTTTTGCTAACTGAGACTTCGTTA 58.722 36.000 4.33 0.00 0.00 3.18
5161 8023 6.706055 TTTGCTAACTGAGACTTCGTTATG 57.294 37.500 0.00 0.00 0.00 1.90
5162 8024 5.386958 TGCTAACTGAGACTTCGTTATGT 57.613 39.130 0.00 0.00 0.00 2.29
5163 8025 5.399858 TGCTAACTGAGACTTCGTTATGTC 58.600 41.667 0.00 0.00 0.00 3.06
5164 8026 5.183331 TGCTAACTGAGACTTCGTTATGTCT 59.817 40.000 0.00 0.00 45.06 3.41
5170 8032 4.442375 AGACTTCGTTATGTCTCAGTGG 57.558 45.455 0.00 0.00 39.04 4.00
5189 8051 7.118723 TCAGTGGCTTGTATATTCCTTTGATT 58.881 34.615 0.00 0.00 0.00 2.57
5207 8069 7.437267 CCTTTGATTTTGCATGGAGATTCATAC 59.563 37.037 3.72 0.00 0.00 2.39
5208 8070 7.407393 TTGATTTTGCATGGAGATTCATACA 57.593 32.000 3.72 0.00 0.00 2.29
5245 8107 6.782150 TCAGTTTTTCTTTCTTCTTCGTTCC 58.218 36.000 0.00 0.00 0.00 3.62
5246 8108 5.971792 CAGTTTTTCTTTCTTCTTCGTTCCC 59.028 40.000 0.00 0.00 0.00 3.97
5250 8112 6.709018 TTTCTTTCTTCTTCGTTCCCAAAT 57.291 33.333 0.00 0.00 0.00 2.32
5251 8113 7.811117 TTTCTTTCTTCTTCGTTCCCAAATA 57.189 32.000 0.00 0.00 0.00 1.40
5252 8114 7.435068 TTCTTTCTTCTTCGTTCCCAAATAG 57.565 36.000 0.00 0.00 0.00 1.73
5302 8164 6.216801 AGTGACTACATACGGAGCAAAATA 57.783 37.500 0.00 0.00 0.00 1.40
5307 8169 6.403878 ACTACATACGGAGCAAAATAAGTGT 58.596 36.000 0.00 0.00 0.00 3.55
5316 8178 9.640963 ACGGAGCAAAATAAGTGTATCTATATC 57.359 33.333 0.00 0.00 0.00 1.63
5317 8179 9.088512 CGGAGCAAAATAAGTGTATCTATATCC 57.911 37.037 0.00 0.00 0.00 2.59
5392 8254 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5393 8255 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5394 8256 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5395 8257 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5396 8258 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5397 8259 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5398 8260 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
5399 8261 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
5401 8263 6.854091 ATTTAGGAACGGAGGGAGTATATC 57.146 41.667 0.00 0.00 0.00 1.63
5402 8264 2.792878 AGGAACGGAGGGAGTATATCG 58.207 52.381 0.00 0.00 0.00 2.92
5403 8265 1.201880 GGAACGGAGGGAGTATATCGC 59.798 57.143 0.00 0.00 41.11 4.58
5413 8275 5.392767 GGGAGTATATCGCTTGATTGAGA 57.607 43.478 0.00 0.00 37.86 3.27
5414 8276 5.164954 GGGAGTATATCGCTTGATTGAGAC 58.835 45.833 0.00 0.00 37.86 3.36
5415 8277 5.047660 GGGAGTATATCGCTTGATTGAGACT 60.048 44.000 0.00 0.00 37.86 3.24
5416 8278 6.451393 GGAGTATATCGCTTGATTGAGACTT 58.549 40.000 0.00 0.00 33.40 3.01
5417 8279 6.364706 GGAGTATATCGCTTGATTGAGACTTG 59.635 42.308 0.00 0.00 33.40 3.16
5418 8280 6.219473 AGTATATCGCTTGATTGAGACTTGG 58.781 40.000 0.00 0.00 33.40 3.61
5419 8281 2.839486 TCGCTTGATTGAGACTTGGT 57.161 45.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.409358 ACTCCTGCTCTTGTTTATATTTTGTT 57.591 30.769 0.00 0.00 0.00 2.83
73 74 3.500635 CCTGGTTCAGGCCCTCTT 58.499 61.111 0.00 0.00 45.13 2.85
88 89 1.219935 GGGACGCGGTGTTTATCCT 59.780 57.895 12.47 0.00 0.00 3.24
91 92 2.433239 AGAATAGGGACGCGGTGTTTAT 59.567 45.455 12.47 0.00 0.00 1.40
186 187 2.109181 GTATCCTGAGTGCGCCCC 59.891 66.667 4.18 0.00 0.00 5.80
209 210 1.225855 GATGGCGCAATTATGGACGA 58.774 50.000 10.83 0.00 0.00 4.20
232 233 2.725221 CTGGGCAAGCCTAGAAGATT 57.275 50.000 18.49 0.00 46.11 2.40
257 258 2.787249 CACATGAGAAAGCCGCCG 59.213 61.111 0.00 0.00 0.00 6.46
296 297 1.153842 CACGACCATGCTGAGCGTA 60.154 57.895 0.00 0.00 33.45 4.42
297 298 2.433145 CACGACCATGCTGAGCGT 60.433 61.111 0.00 0.00 35.33 5.07
303 304 2.045926 GCCTTCCACGACCATGCT 60.046 61.111 0.00 0.00 0.00 3.79
344 345 2.776370 TACCCTGGTCGAGAGCCGTT 62.776 60.000 0.00 0.00 39.75 4.44
372 373 2.434428 CTGAGAGCTGATTTGTTGGCT 58.566 47.619 0.00 0.00 37.77 4.75
389 390 1.227350 CGGGCAATCGATCAGCTGA 60.227 57.895 20.79 20.79 0.00 4.26
419 420 4.339814 AGCTATTCACTAGGGACTTCTTCG 59.660 45.833 0.00 0.00 41.75 3.79
434 435 1.406341 GCAACGGTACCCAGCTATTCA 60.406 52.381 6.25 0.00 0.00 2.57
480 482 3.485877 GCTGCTACGACCTAATGCAAAAG 60.486 47.826 0.00 0.00 33.07 2.27
572 574 4.056125 CCACTGTCGAGGCTCGCA 62.056 66.667 31.01 27.34 40.21 5.10
600 602 4.098416 GCATCTTTTTCCATCTTACACGC 58.902 43.478 0.00 0.00 0.00 5.34
681 684 1.731613 CGTGCTCTCGCGGTACAAA 60.732 57.895 6.13 0.00 42.06 2.83
700 703 1.359459 GAGCCAATCCAACGACGACC 61.359 60.000 0.00 0.00 0.00 4.79
707 710 3.489738 CGATGGAAATGAGCCAATCCAAC 60.490 47.826 13.29 10.98 44.58 3.77
805 808 9.990360 GTGGGTTGAAATCTTTCCTTTATTTTA 57.010 29.630 0.48 0.00 36.36 1.52
806 809 8.490311 TGTGGGTTGAAATCTTTCCTTTATTTT 58.510 29.630 0.48 0.00 36.36 1.82
810 813 5.303333 GGTGTGGGTTGAAATCTTTCCTTTA 59.697 40.000 0.48 0.00 36.36 1.85
1271 2033 4.389576 GCGCTGCGGACAACAAGG 62.390 66.667 24.61 0.00 0.00 3.61
1357 2119 3.000277 CAGTGCTGAAATCGACGATCTTC 60.000 47.826 11.42 15.78 0.00 2.87
1642 2404 4.772100 TCCGAGCAATATGGATAGACATGA 59.228 41.667 0.00 0.00 32.39 3.07
1643 2405 5.077134 TCCGAGCAATATGGATAGACATG 57.923 43.478 0.00 0.00 32.39 3.21
1644 2406 5.012046 TGTTCCGAGCAATATGGATAGACAT 59.988 40.000 0.00 0.00 34.90 3.06
1645 2407 4.343814 TGTTCCGAGCAATATGGATAGACA 59.656 41.667 0.00 0.00 0.00 3.41
1646 2408 4.883083 TGTTCCGAGCAATATGGATAGAC 58.117 43.478 0.00 0.00 0.00 2.59
1647 2409 5.541845 CTTGTTCCGAGCAATATGGATAGA 58.458 41.667 0.00 0.00 0.00 1.98
1648 2410 4.153117 GCTTGTTCCGAGCAATATGGATAG 59.847 45.833 0.00 0.00 40.38 2.08
1649 2411 4.065088 GCTTGTTCCGAGCAATATGGATA 58.935 43.478 0.00 0.00 40.38 2.59
1650 2412 2.880890 GCTTGTTCCGAGCAATATGGAT 59.119 45.455 0.00 0.00 40.38 3.41
1651 2413 2.092968 AGCTTGTTCCGAGCAATATGGA 60.093 45.455 6.27 0.00 42.91 3.41
1652 2414 2.032550 CAGCTTGTTCCGAGCAATATGG 59.967 50.000 6.27 0.00 42.91 2.74
1653 2415 2.679837 ACAGCTTGTTCCGAGCAATATG 59.320 45.455 6.27 3.66 42.91 1.78
1654 2416 2.991250 ACAGCTTGTTCCGAGCAATAT 58.009 42.857 6.27 0.00 42.91 1.28
1655 2417 2.472695 ACAGCTTGTTCCGAGCAATA 57.527 45.000 6.27 0.00 42.91 1.90
1656 2418 1.267806 CAACAGCTTGTTCCGAGCAAT 59.732 47.619 6.27 0.00 42.91 3.56
1657 2419 0.662619 CAACAGCTTGTTCCGAGCAA 59.337 50.000 6.27 0.00 42.91 3.91
1658 2420 0.463654 ACAACAGCTTGTTCCGAGCA 60.464 50.000 6.27 0.00 42.91 4.26
1659 2421 0.663153 AACAACAGCTTGTTCCGAGC 59.337 50.000 0.00 0.00 45.81 5.03
1666 2428 2.351726 GACTGACGAAACAACAGCTTGT 59.648 45.455 0.00 0.00 42.81 3.16
1667 2429 2.597505 CGACTGACGAAACAACAGCTTG 60.598 50.000 0.00 0.00 45.77 4.01
1668 2430 1.593006 CGACTGACGAAACAACAGCTT 59.407 47.619 0.00 0.00 45.77 3.74
1669 2431 1.209128 CGACTGACGAAACAACAGCT 58.791 50.000 0.00 0.00 45.77 4.24
1670 2432 0.928229 ACGACTGACGAAACAACAGC 59.072 50.000 6.52 0.00 45.77 4.40
1671 2433 1.924524 ACACGACTGACGAAACAACAG 59.075 47.619 6.52 0.00 45.77 3.16
1672 2434 1.921887 GACACGACTGACGAAACAACA 59.078 47.619 6.52 0.00 45.77 3.33
1673 2435 2.034842 CAGACACGACTGACGAAACAAC 60.035 50.000 6.52 0.00 45.77 3.32
1674 2436 2.190161 CAGACACGACTGACGAAACAA 58.810 47.619 6.52 0.00 45.77 2.83
1675 2437 1.133598 ACAGACACGACTGACGAAACA 59.866 47.619 6.52 0.00 45.77 2.83
1676 2438 1.517276 CACAGACACGACTGACGAAAC 59.483 52.381 6.52 0.00 45.77 2.78
1677 2439 1.133598 ACACAGACACGACTGACGAAA 59.866 47.619 6.52 0.00 45.77 3.46
1678 2440 0.736636 ACACAGACACGACTGACGAA 59.263 50.000 6.52 0.00 45.77 3.85
1679 2441 0.736636 AACACAGACACGACTGACGA 59.263 50.000 6.52 0.00 45.77 4.20
1681 2443 3.703420 ACTAAACACAGACACGACTGAC 58.297 45.455 13.55 0.00 40.63 3.51
1682 2444 5.700722 ATACTAAACACAGACACGACTGA 57.299 39.130 13.55 0.00 40.63 3.41
1683 2445 5.118664 CCAATACTAAACACAGACACGACTG 59.881 44.000 0.00 0.00 42.78 3.51
1684 2446 5.221382 ACCAATACTAAACACAGACACGACT 60.221 40.000 0.00 0.00 0.00 4.18
1685 2447 4.986659 ACCAATACTAAACACAGACACGAC 59.013 41.667 0.00 0.00 0.00 4.34
1686 2448 5.204409 ACCAATACTAAACACAGACACGA 57.796 39.130 0.00 0.00 0.00 4.35
1687 2449 8.867112 ATATACCAATACTAAACACAGACACG 57.133 34.615 0.00 0.00 0.00 4.49
1688 2450 9.811995 TGATATACCAATACTAAACACAGACAC 57.188 33.333 0.00 0.00 0.00 3.67
1698 2460 9.831682 TGGGTAGACATGATATACCAATACTAA 57.168 33.333 19.90 2.77 45.67 2.24
1700 2462 8.917414 ATGGGTAGACATGATATACCAATACT 57.083 34.615 19.90 0.00 45.67 2.12
1703 2465 7.257162 AAGCATGGGTAGACATGATATACCAAT 60.257 37.037 19.90 14.62 45.78 3.16
1704 2466 6.044287 AAGCATGGGTAGACATGATATACCAA 59.956 38.462 19.90 13.41 45.78 3.67
1705 2467 5.547666 AAGCATGGGTAGACATGATATACCA 59.452 40.000 19.90 13.73 45.78 3.25
1706 2468 6.054860 AAGCATGGGTAGACATGATATACC 57.945 41.667 10.11 8.36 45.78 2.73
1707 2469 6.940739 AGAAGCATGGGTAGACATGATATAC 58.059 40.000 10.11 0.00 45.78 1.47
1708 2470 7.895962 ACTAGAAGCATGGGTAGACATGATATA 59.104 37.037 10.11 1.05 45.78 0.86
1709 2471 6.728164 ACTAGAAGCATGGGTAGACATGATAT 59.272 38.462 10.11 0.00 45.78 1.63
1710 2472 6.015095 CACTAGAAGCATGGGTAGACATGATA 60.015 42.308 10.11 0.00 45.78 2.15
2036 2804 6.695278 CCACGTGGTTATAATGCAATTAAAGG 59.305 38.462 26.95 0.00 42.96 3.11
2057 2825 2.202797 CTCCTCACGGCATCCACG 60.203 66.667 0.00 0.00 37.36 4.94
2173 2941 8.683615 GGAATACCGTTCTGAAGGAAAAATAAT 58.316 33.333 11.39 0.00 35.51 1.28
2175 2943 7.399634 AGGAATACCGTTCTGAAGGAAAAATA 58.600 34.615 11.39 0.00 41.83 1.40
2176 2944 6.246163 AGGAATACCGTTCTGAAGGAAAAAT 58.754 36.000 11.39 0.00 41.83 1.82
2238 3009 1.553704 CCACCACCACTACTAACTCCC 59.446 57.143 0.00 0.00 0.00 4.30
2266 3037 2.486410 TTAGGGTGGAGTGGGGGAGG 62.486 65.000 0.00 0.00 0.00 4.30
2283 4698 6.071984 GGTTCTAGATGACTGAGGGAGATTA 58.928 44.000 0.00 0.00 0.00 1.75
2341 4756 3.424703 AGAACACCATTGCAAGCTATGT 58.575 40.909 4.94 3.97 0.00 2.29
2342 4757 3.441222 TGAGAACACCATTGCAAGCTATG 59.559 43.478 4.94 9.09 0.00 2.23
2577 5171 4.816264 GCCTTATACAGGGAGATCTAGGCT 60.816 50.000 16.68 0.00 44.16 4.58
2655 5249 2.752030 TCTCAGGCTTATGCTGGTACT 58.248 47.619 0.13 0.00 39.59 2.73
2662 5256 2.368221 ACCTCAGATCTCAGGCTTATGC 59.632 50.000 13.42 0.00 38.76 3.14
2773 5367 3.885297 GCATCTTGGAAGGCTGCTAATTA 59.115 43.478 0.00 0.00 34.45 1.40
2800 5394 1.792949 CAGTCAACTGTAACCGCAGAC 59.207 52.381 1.88 0.00 39.62 3.51
2973 5718 3.253432 GGGAAACTAGACTGCCAAACTTG 59.747 47.826 0.00 0.00 0.00 3.16
3013 5758 6.575267 TGCATGCTATTATTTGCAATCTTGT 58.425 32.000 20.33 0.00 41.76 3.16
3014 5759 7.509797 CATGCATGCTATTATTTGCAATCTTG 58.490 34.615 20.33 0.00 46.97 3.02
3047 5793 8.793592 TGTACTAGTGATGCATAAATCGACTAT 58.206 33.333 5.39 0.00 0.00 2.12
3105 5852 9.515226 TGGAAACAATAGCATAGGTAATAATCC 57.485 33.333 0.00 0.00 37.44 3.01
3111 5858 7.448777 TGTTTGTGGAAACAATAGCATAGGTAA 59.551 33.333 0.00 0.00 46.75 2.85
3128 5875 2.569404 AGCCAAAGGTTTTGTTTGTGGA 59.431 40.909 0.00 0.00 33.75 4.02
3157 5904 2.768527 TCCCAAGGCAAACATTCACAAA 59.231 40.909 0.00 0.00 0.00 2.83
3184 5931 3.096489 TGCAGCACAAACAAAGAATCC 57.904 42.857 0.00 0.00 0.00 3.01
3217 5964 7.994911 TCTATGCATCCAAATGTTTCTCATAGT 59.005 33.333 0.19 0.00 35.12 2.12
3250 5998 4.979335 TGGGATGTGACAACAACTCATAA 58.021 39.130 0.00 0.00 34.87 1.90
3346 6098 4.260579 CGTACTCATGCAATATCCGCAAAA 60.261 41.667 4.08 0.00 43.84 2.44
3347 6099 3.247411 CGTACTCATGCAATATCCGCAAA 59.753 43.478 4.08 0.00 43.84 3.68
3615 6382 2.292016 TGAATGTGGCGTCAACGAAAAT 59.708 40.909 6.75 0.00 43.02 1.82
3626 6393 2.068837 AAATTGCTGTGAATGTGGCG 57.931 45.000 0.00 0.00 0.00 5.69
3761 6536 9.981114 GAAAAGAGAAAATGGAAACCTAAATGA 57.019 29.630 0.00 0.00 0.00 2.57
3828 6603 4.209538 TGAAATCGCTCCCATGAATGAAT 58.790 39.130 0.00 0.00 0.00 2.57
3873 6679 5.541953 TGACTGTGATCCCATAGATTGAG 57.458 43.478 0.00 0.00 34.42 3.02
4104 6910 3.579147 TTGAAACGACAACTTAGCACG 57.421 42.857 0.00 0.00 0.00 5.34
4179 6985 3.291584 AGTCGAGAAGCATCAGGTGATA 58.708 45.455 0.00 0.00 32.63 2.15
4335 7163 3.384789 TGTACTCCATCAGATAGGTGTGC 59.615 47.826 12.94 12.27 35.48 4.57
4511 7344 4.495422 AGTAGCATGACAAAGAGTAACCG 58.505 43.478 0.00 0.00 0.00 4.44
4587 7420 2.764010 AGTCGACCAATACAGGCATACA 59.236 45.455 13.01 0.00 0.00 2.29
4609 7442 6.716934 TTCACCTAAATAGTTGCCAAAACA 57.283 33.333 0.00 0.00 0.00 2.83
4699 7542 5.011090 TCAGACGTTCCCTAGATTCAATG 57.989 43.478 0.00 0.00 0.00 2.82
4826 7669 7.682787 ACCCTCTTATATCACAGATCTTTGT 57.317 36.000 8.67 0.00 0.00 2.83
5072 7934 7.697691 CAATGTTTGGGTGATGAATACTCTAC 58.302 38.462 0.00 0.00 0.00 2.59
5122 7984 8.713271 CAGTTAGCAAAACTGTTTTTAAAACCA 58.287 29.630 15.41 0.00 41.90 3.67
5149 8011 3.367498 GCCACTGAGACATAACGAAGTCT 60.367 47.826 0.00 0.00 45.00 3.24
5150 8012 2.924290 GCCACTGAGACATAACGAAGTC 59.076 50.000 0.00 0.00 45.00 3.01
5153 8015 3.244078 ACAAGCCACTGAGACATAACGAA 60.244 43.478 0.00 0.00 0.00 3.85
5156 8018 7.171678 GGAATATACAAGCCACTGAGACATAAC 59.828 40.741 0.00 0.00 0.00 1.89
5157 8019 7.071196 AGGAATATACAAGCCACTGAGACATAA 59.929 37.037 0.00 0.00 0.00 1.90
5158 8020 6.554982 AGGAATATACAAGCCACTGAGACATA 59.445 38.462 0.00 0.00 0.00 2.29
5159 8021 5.367937 AGGAATATACAAGCCACTGAGACAT 59.632 40.000 0.00 0.00 0.00 3.06
5161 8023 5.283457 AGGAATATACAAGCCACTGAGAC 57.717 43.478 0.00 0.00 0.00 3.36
5162 8024 5.957771 AAGGAATATACAAGCCACTGAGA 57.042 39.130 0.00 0.00 0.00 3.27
5163 8025 6.115446 TCAAAGGAATATACAAGCCACTGAG 58.885 40.000 0.00 0.00 0.00 3.35
5164 8026 6.061022 TCAAAGGAATATACAAGCCACTGA 57.939 37.500 0.00 0.00 0.00 3.41
5165 8027 6.949352 ATCAAAGGAATATACAAGCCACTG 57.051 37.500 0.00 0.00 0.00 3.66
5166 8028 7.961326 AAATCAAAGGAATATACAAGCCACT 57.039 32.000 0.00 0.00 0.00 4.00
5167 8029 7.010460 GCAAAATCAAAGGAATATACAAGCCAC 59.990 37.037 0.00 0.00 0.00 5.01
5168 8030 7.041107 GCAAAATCAAAGGAATATACAAGCCA 58.959 34.615 0.00 0.00 0.00 4.75
5169 8031 7.041107 TGCAAAATCAAAGGAATATACAAGCC 58.959 34.615 0.00 0.00 0.00 4.35
5170 8032 8.545420 CATGCAAAATCAAAGGAATATACAAGC 58.455 33.333 0.00 0.00 0.00 4.01
5222 8084 5.971792 GGGAACGAAGAAGAAAGAAAAACTG 59.028 40.000 0.00 0.00 0.00 3.16
5234 8096 8.943909 ACTTATACTATTTGGGAACGAAGAAG 57.056 34.615 0.00 0.00 37.08 2.85
5269 8131 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
5274 8136 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5316 8178 7.962964 ACGGATGTATGTAGACATATTTTGG 57.037 36.000 5.69 0.21 40.18 3.28
5337 8199 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
5349 8211 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
5379 8241 4.763793 CGATATACTCCCTCCGTTCCTAAA 59.236 45.833 0.00 0.00 0.00 1.85
5380 8242 4.330250 CGATATACTCCCTCCGTTCCTAA 58.670 47.826 0.00 0.00 0.00 2.69
5381 8243 3.871463 GCGATATACTCCCTCCGTTCCTA 60.871 52.174 0.00 0.00 0.00 2.94
5382 8244 2.792878 CGATATACTCCCTCCGTTCCT 58.207 52.381 0.00 0.00 0.00 3.36
5383 8245 1.201880 GCGATATACTCCCTCCGTTCC 59.798 57.143 0.00 0.00 0.00 3.62
5384 8246 2.161030 AGCGATATACTCCCTCCGTTC 58.839 52.381 0.00 0.00 0.00 3.95
5385 8247 2.289592 AGCGATATACTCCCTCCGTT 57.710 50.000 0.00 0.00 0.00 4.44
5386 8248 1.887198 CAAGCGATATACTCCCTCCGT 59.113 52.381 0.00 0.00 0.00 4.69
5387 8249 2.160205 TCAAGCGATATACTCCCTCCG 58.840 52.381 0.00 0.00 0.00 4.63
5388 8250 4.220821 TCAATCAAGCGATATACTCCCTCC 59.779 45.833 0.00 0.00 0.00 4.30
5389 8251 5.184096 TCTCAATCAAGCGATATACTCCCTC 59.816 44.000 0.00 0.00 0.00 4.30
5390 8252 5.047660 GTCTCAATCAAGCGATATACTCCCT 60.048 44.000 0.00 0.00 0.00 4.20
5391 8253 5.047660 AGTCTCAATCAAGCGATATACTCCC 60.048 44.000 0.00 0.00 0.00 4.30
5392 8254 6.019779 AGTCTCAATCAAGCGATATACTCC 57.980 41.667 0.00 0.00 0.00 3.85
5393 8255 6.364706 CCAAGTCTCAATCAAGCGATATACTC 59.635 42.308 0.00 0.00 0.00 2.59
5394 8256 6.183360 ACCAAGTCTCAATCAAGCGATATACT 60.183 38.462 0.00 0.00 0.00 2.12
5395 8257 5.986135 ACCAAGTCTCAATCAAGCGATATAC 59.014 40.000 0.00 0.00 0.00 1.47
5396 8258 6.161855 ACCAAGTCTCAATCAAGCGATATA 57.838 37.500 0.00 0.00 0.00 0.86
5397 8259 5.028549 ACCAAGTCTCAATCAAGCGATAT 57.971 39.130 0.00 0.00 0.00 1.63
5398 8260 4.471904 ACCAAGTCTCAATCAAGCGATA 57.528 40.909 0.00 0.00 0.00 2.92
5399 8261 3.340814 ACCAAGTCTCAATCAAGCGAT 57.659 42.857 0.00 0.00 0.00 4.58
5400 8262 2.839486 ACCAAGTCTCAATCAAGCGA 57.161 45.000 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.