Multiple sequence alignment - TraesCS4D01G216500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G216500 chr4D 100.000 4525 0 0 1 4525 370631739 370636263 0.000000e+00 8357
1 TraesCS4D01G216500 chr4D 90.768 3932 302 39 243 4135 276860588 276864497 0.000000e+00 5193
2 TraesCS4D01G216500 chr4D 92.823 1686 103 7 2466 4135 170243000 170241317 0.000000e+00 2427
3 TraesCS4D01G216500 chr4D 95.200 375 13 5 4152 4525 170240679 170240309 5.040000e-164 588
4 TraesCS4D01G216500 chr5D 94.343 4172 194 21 1 4135 45266149 45270315 0.000000e+00 6359
5 TraesCS4D01G216500 chr5D 93.948 4164 220 15 1 4135 551047129 551042969 0.000000e+00 6264
6 TraesCS4D01G216500 chr5D 94.123 3573 167 15 1 3560 196188122 196184580 0.000000e+00 5395
7 TraesCS4D01G216500 chr5D 91.419 606 30 3 3545 4135 196182926 196182328 0.000000e+00 811
8 TraesCS4D01G216500 chr5D 91.755 376 25 5 4150 4525 45270951 45271320 6.710000e-143 518
9 TraesCS4D01G216500 chrUn 93.405 4003 227 19 164 4135 104750075 104754071 0.000000e+00 5895
10 TraesCS4D01G216500 chrUn 90.489 1493 93 10 2664 4135 97056611 97058075 0.000000e+00 1925
11 TraesCS4D01G216500 chr1D 91.374 4162 305 38 1 4135 110920035 110915901 0.000000e+00 5648
12 TraesCS4D01G216500 chr1D 93.845 2762 141 13 1397 4135 344095194 344092439 0.000000e+00 4132
13 TraesCS4D01G216500 chr1D 90.309 1713 101 23 2442 4135 89110784 89109118 0.000000e+00 2183
14 TraesCS4D01G216500 chr1D 94.681 376 19 1 4150 4525 344091802 344091428 2.350000e-162 582
15 TraesCS4D01G216500 chr1D 94.681 376 15 5 4150 4525 110915269 110914899 3.030000e-161 579
16 TraesCS4D01G216500 chr2D 92.708 2578 158 19 1 2558 482909015 482911582 0.000000e+00 3692
17 TraesCS4D01G216500 chr2D 92.376 1692 106 9 2465 4135 395577907 395579596 0.000000e+00 2388
18 TraesCS4D01G216500 chr2D 92.208 1694 110 9 2465 4137 482911635 482913327 0.000000e+00 2377
19 TraesCS4D01G216500 chr2D 92.895 380 18 7 4150 4525 482913961 482914335 1.110000e-150 544
20 TraesCS4D01G216500 chr2D 92.105 380 21 8 4150 4525 395580207 395580581 1.110000e-145 527
21 TraesCS4D01G216500 chr5A 92.624 2576 168 15 1 2561 232666820 232664252 0.000000e+00 3685
22 TraesCS4D01G216500 chr6D 92.613 2572 171 12 4 2561 126413963 126411397 0.000000e+00 3679
23 TraesCS4D01G216500 chr7D 92.535 2572 175 11 4 2561 420441559 420438991 0.000000e+00 3670
24 TraesCS4D01G216500 chr7D 92.052 2076 117 22 2471 4525 150590123 150592171 0.000000e+00 2876
25 TraesCS4D01G216500 chr7D 92.344 1685 110 6 2469 4135 420438937 420437254 0.000000e+00 2379
26 TraesCS4D01G216500 chr7D 92.130 1690 111 10 2468 4135 557862548 557860859 0.000000e+00 2364
27 TraesCS4D01G216500 chr7D 93.668 379 17 5 4150 4525 420436617 420436243 1.100000e-155 560
28 TraesCS4D01G216500 chr7D 92.895 380 18 8 4150 4525 129756165 129755791 1.110000e-150 544
29 TraesCS4D01G216500 chr7D 91.821 379 26 4 4150 4525 557860222 557859846 1.440000e-144 523
30 TraesCS4D01G216500 chr7D 89.736 341 21 4 3809 4135 39107589 39107249 1.500000e-114 424
31 TraesCS4D01G216500 chr1A 86.035 401 41 6 3747 4133 252753597 252753198 2.520000e-112 416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G216500 chr4D 370631739 370636263 4524 False 8357.000000 8357 100.000000 1 4525 1 chr4D.!!$F2 4524
1 TraesCS4D01G216500 chr4D 276860588 276864497 3909 False 5193.000000 5193 90.768000 243 4135 1 chr4D.!!$F1 3892
2 TraesCS4D01G216500 chr4D 170240309 170243000 2691 True 1507.500000 2427 94.011500 2466 4525 2 chr4D.!!$R1 2059
3 TraesCS4D01G216500 chr5D 551042969 551047129 4160 True 6264.000000 6264 93.948000 1 4135 1 chr5D.!!$R1 4134
4 TraesCS4D01G216500 chr5D 45266149 45271320 5171 False 3438.500000 6359 93.049000 1 4525 2 chr5D.!!$F1 4524
5 TraesCS4D01G216500 chr5D 196182328 196188122 5794 True 3103.000000 5395 92.771000 1 4135 2 chr5D.!!$R2 4134
6 TraesCS4D01G216500 chrUn 104750075 104754071 3996 False 5895.000000 5895 93.405000 164 4135 1 chrUn.!!$F2 3971
7 TraesCS4D01G216500 chrUn 97056611 97058075 1464 False 1925.000000 1925 90.489000 2664 4135 1 chrUn.!!$F1 1471
8 TraesCS4D01G216500 chr1D 110914899 110920035 5136 True 3113.500000 5648 93.027500 1 4525 2 chr1D.!!$R2 4524
9 TraesCS4D01G216500 chr1D 344091428 344095194 3766 True 2357.000000 4132 94.263000 1397 4525 2 chr1D.!!$R3 3128
10 TraesCS4D01G216500 chr1D 89109118 89110784 1666 True 2183.000000 2183 90.309000 2442 4135 1 chr1D.!!$R1 1693
11 TraesCS4D01G216500 chr2D 482909015 482914335 5320 False 2204.333333 3692 92.603667 1 4525 3 chr2D.!!$F2 4524
12 TraesCS4D01G216500 chr2D 395577907 395580581 2674 False 1457.500000 2388 92.240500 2465 4525 2 chr2D.!!$F1 2060
13 TraesCS4D01G216500 chr5A 232664252 232666820 2568 True 3685.000000 3685 92.624000 1 2561 1 chr5A.!!$R1 2560
14 TraesCS4D01G216500 chr6D 126411397 126413963 2566 True 3679.000000 3679 92.613000 4 2561 1 chr6D.!!$R1 2557
15 TraesCS4D01G216500 chr7D 150590123 150592171 2048 False 2876.000000 2876 92.052000 2471 4525 1 chr7D.!!$F1 2054
16 TraesCS4D01G216500 chr7D 420436243 420441559 5316 True 2203.000000 3670 92.849000 4 4525 3 chr7D.!!$R3 4521
17 TraesCS4D01G216500 chr7D 557859846 557862548 2702 True 1443.500000 2364 91.975500 2468 4525 2 chr7D.!!$R4 2057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 957 1.068434 CAAAGTTCCATGGGTTTGCGT 59.932 47.619 13.02 0.0 0.00 5.24 F
1612 1629 0.304705 CCATGCGCTCCATTCGTAAC 59.695 55.000 9.73 0.0 29.71 2.50 F
3115 3662 0.246086 GGGCCGCAAACATCAAATGA 59.754 50.000 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1844 0.683973 AGTGTCTCCTCAGCCTTGTG 59.316 55.000 0.0 0.0 0.00 3.33 R
3379 3928 1.610522 GTGTGCTTGCTGTTCCAGATT 59.389 47.619 0.0 0.0 32.44 2.40 R
4279 7163 0.110295 CACCACAGGACCCACATGAA 59.890 55.000 0.0 0.0 34.19 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 3.922240 CAGAACACAATACTGCATTTGCC 59.078 43.478 0.00 0.00 41.18 4.52
64 66 5.720371 ACACAATACTGCATTTGCCTTTA 57.280 34.783 0.00 0.00 41.18 1.85
85 87 3.281727 TGGGAATAGCATGTGAGGAAC 57.718 47.619 0.00 0.00 0.00 3.62
95 97 6.299805 AGCATGTGAGGAACAGTAGATTTA 57.700 37.500 0.00 0.00 43.64 1.40
358 363 7.066307 AGAACCCAAGTTTTGATGCTAAAAT 57.934 32.000 0.00 0.00 35.94 1.82
556 565 3.968180 GCAAATGCTTACGCTCGC 58.032 55.556 0.00 0.00 38.21 5.03
564 574 1.956620 GCTTACGCTCGCACCTGTTC 61.957 60.000 0.00 0.00 0.00 3.18
615 625 3.991051 CGGCGCGGGGACATCTAT 61.991 66.667 8.83 0.00 0.00 1.98
804 816 7.706607 CCGATACTGAAGTGAATGATGAAACTA 59.293 37.037 0.00 0.00 0.00 2.24
943 957 1.068434 CAAAGTTCCATGGGTTTGCGT 59.932 47.619 13.02 0.00 0.00 5.24
1278 1295 2.357327 TTGTAACGTCGGTCCATCAG 57.643 50.000 0.00 0.00 0.00 2.90
1484 1501 4.901849 AGGATAAGATTGGACGATGAGGAA 59.098 41.667 0.00 0.00 0.00 3.36
1509 1526 3.329225 TGTCAGGAACATGTATTGGGTGA 59.671 43.478 0.00 0.00 31.20 4.02
1560 1577 2.694213 TCCGAGATTGCATTTCGTTCA 58.306 42.857 12.15 0.00 32.73 3.18
1586 1603 7.986562 ACGCGACATATCTCACTAATATGTAT 58.013 34.615 15.93 0.00 45.69 2.29
1608 1625 2.453773 GATGCCATGCGCTCCATTCG 62.454 60.000 9.73 0.00 38.78 3.34
1612 1629 0.304705 CCATGCGCTCCATTCGTAAC 59.695 55.000 9.73 0.00 29.71 2.50
1644 1661 4.281435 ACCACAATCAATCATTGCAGTTCA 59.719 37.500 0.00 0.00 45.37 3.18
1664 1681 1.376609 GATGCGGGCTTGTTCGGAAT 61.377 55.000 0.00 0.00 0.00 3.01
1674 1691 2.804697 TGTTCGGAATGAAGACACGA 57.195 45.000 0.00 0.00 37.23 4.35
1944 1961 1.347707 AGTTTGAACGGAGCTGGATGA 59.652 47.619 0.00 0.00 0.00 2.92
1987 2004 0.508641 CAAGACAACGAGACGCTTGG 59.491 55.000 0.00 0.00 34.00 3.61
2038 2055 0.392998 CCGGCCTACTTCATGCACTT 60.393 55.000 0.00 0.00 0.00 3.16
2062 2079 5.190528 TCTTCTTCCCATTTCTGCAGACTAT 59.809 40.000 18.03 10.33 0.00 2.12
2201 2219 1.065600 GCAAGAAGCAAACACCGCA 59.934 52.632 0.00 0.00 44.79 5.69
2405 2433 1.032114 GTGGCCATTGAGTACAGGGC 61.032 60.000 9.72 0.00 45.99 5.19
2443 2471 7.753309 AGTTACCATGTTTAATGTACTGCAA 57.247 32.000 0.00 0.00 0.00 4.08
2499 2935 6.892658 TTAATGAACTACAGTTGCCATGTT 57.107 33.333 0.00 0.00 38.56 2.71
2504 2940 7.283625 TGAACTACAGTTGCCATGTTTAATT 57.716 32.000 0.00 0.00 38.56 1.40
2517 2953 7.040062 TGCCATGTTTAATTAACTACAGTTGCT 60.040 33.333 4.86 0.00 38.90 3.91
3088 3634 1.069668 GTGGACTTGGGACACTAACGT 59.930 52.381 0.00 0.00 39.29 3.99
3115 3662 0.246086 GGGCCGCAAACATCAAATGA 59.754 50.000 0.00 0.00 0.00 2.57
3117 3665 2.411904 GGCCGCAAACATCAAATGAAA 58.588 42.857 0.00 0.00 0.00 2.69
3131 3679 6.116680 TCAAATGAAATTTTGGTTGTGCAC 57.883 33.333 10.75 10.75 46.10 4.57
3224 3772 1.127582 GATGAAGCGTGCAAGAGTGAC 59.872 52.381 2.99 0.00 0.00 3.67
3225 3773 0.880278 TGAAGCGTGCAAGAGTGACC 60.880 55.000 2.99 0.00 0.00 4.02
3379 3928 4.341487 TCATCTGAAAACTCGGAGGTAGA 58.659 43.478 10.23 3.17 0.00 2.59
3450 3999 0.461961 CACAAAGGGGCGTCCAAAAA 59.538 50.000 9.07 0.00 38.24 1.94
3593 5819 8.450964 TGCAAGCTAGATGTTCTAAATTTGTAC 58.549 33.333 0.00 0.00 0.00 2.90
3657 5886 6.131264 AGGAAATGCCATGAATCAATGACTA 58.869 36.000 0.00 0.00 40.02 2.59
3674 5903 1.295792 CTACAGTTGCCACGTGTGTT 58.704 50.000 15.65 0.00 0.00 3.32
3710 5939 6.209192 TGCCATGTTATTTCAACTGAATCTGT 59.791 34.615 0.00 0.00 33.54 3.41
3718 5947 1.462283 CAACTGAATCTGTCGTGCCTG 59.538 52.381 0.00 0.00 0.00 4.85
3757 5986 6.626623 GCCATGTTATTTCAACTGAATCTGCT 60.627 38.462 0.00 0.00 33.54 4.24
3793 6022 3.949754 TGAATCTGCCATGCCTTTTCTAG 59.050 43.478 0.00 0.00 0.00 2.43
3864 6094 1.409064 TCTGCCATCGCGTAGATTTCT 59.591 47.619 5.77 0.00 37.52 2.52
3986 6237 1.001706 TGCTAGCCGATACAGTTAGCG 60.002 52.381 13.29 0.00 39.57 4.26
4012 6266 3.990959 AAAAACCCAAAGAGCCAAACA 57.009 38.095 0.00 0.00 0.00 2.83
4137 6392 6.256321 ACCCACAAACGCGTAATAATACTAAG 59.744 38.462 14.46 0.00 0.00 2.18
4138 6393 6.292488 CCCACAAACGCGTAATAATACTAAGG 60.292 42.308 14.46 2.38 0.00 2.69
4139 6394 6.256321 CCACAAACGCGTAATAATACTAAGGT 59.744 38.462 14.46 0.00 0.00 3.50
4141 6396 7.221452 CACAAACGCGTAATAATACTAAGGTCT 59.779 37.037 14.46 0.00 0.00 3.85
4142 6397 7.761249 ACAAACGCGTAATAATACTAAGGTCTT 59.239 33.333 14.46 0.00 0.00 3.01
4143 6398 7.920908 AACGCGTAATAATACTAAGGTCTTC 57.079 36.000 14.46 0.00 0.00 2.87
4144 6399 7.031226 ACGCGTAATAATACTAAGGTCTTCA 57.969 36.000 11.67 0.00 0.00 3.02
4145 6400 7.655490 ACGCGTAATAATACTAAGGTCTTCAT 58.345 34.615 11.67 0.00 0.00 2.57
4197 7081 4.341235 AGCATGCGTAGTAAGGTCTTCATA 59.659 41.667 13.01 0.00 0.00 2.15
4215 7099 1.148310 TAAGCTTCTGAACGCACTGC 58.852 50.000 0.00 0.00 0.00 4.40
4337 7222 3.356290 GGGAACATGACCTGCAAGTAAT 58.644 45.455 0.00 0.00 0.00 1.89
4393 7282 8.724229 CATCAAGAACAGAAATGATGTAGTTGA 58.276 33.333 6.47 5.85 42.53 3.18
4394 7283 8.675705 TCAAGAACAGAAATGATGTAGTTGAA 57.324 30.769 0.00 0.00 33.19 2.69
4449 7338 5.356190 CACTAAGAGGCACATGAATGACATT 59.644 40.000 0.00 0.00 37.07 2.71
4499 7393 8.028354 CACCATCATAGAAATGTTTAGTTGCAA 58.972 33.333 0.00 0.00 34.50 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 4.545678 TCCCATAAAGGCAAATGCAGTAT 58.454 39.130 7.80 0.00 44.36 2.12
60 62 5.624159 TCCTCACATGCTATTCCCATAAAG 58.376 41.667 0.00 0.00 0.00 1.85
64 66 3.202818 TGTTCCTCACATGCTATTCCCAT 59.797 43.478 0.00 0.00 0.00 4.00
85 87 5.522460 CACCACCACCGTTATAAATCTACTG 59.478 44.000 0.00 0.00 0.00 2.74
95 97 2.660670 TTTTCCACCACCACCGTTAT 57.339 45.000 0.00 0.00 0.00 1.89
142 145 2.741759 TAGATGACTCTTTGCACGCA 57.258 45.000 0.00 0.00 32.66 5.24
295 300 3.084039 AGTCCAACATACATGGCAACTG 58.916 45.455 0.00 0.00 37.88 3.16
556 565 4.321230 GGTCCTGCAATAAAAGAACAGGTG 60.321 45.833 7.19 0.00 46.49 4.00
564 574 5.712152 AGTTGAAGGTCCTGCAATAAAAG 57.288 39.130 15.82 0.00 31.03 2.27
615 625 2.046892 GCTCAGAGCTTCCCGCAA 60.047 61.111 15.78 0.00 42.61 4.85
804 816 0.400213 TCCCCTTGTGCTTCGTCATT 59.600 50.000 0.00 0.00 0.00 2.57
943 957 8.810990 ATTTTCCTATGGTATTCGGTGTTAAA 57.189 30.769 0.00 0.00 0.00 1.52
1055 1071 0.889306 ACCTCTCTTTCGTTCCGGAG 59.111 55.000 3.34 0.00 0.00 4.63
1278 1295 2.104963 GGGACAGTATCTGGACCATTCC 59.895 54.545 0.00 5.80 43.19 3.01
1484 1501 3.334691 CCAATACATGTTCCTGACACGT 58.665 45.455 2.30 0.00 42.04 4.49
1509 1526 1.580845 GCTCTTCGTGCAGCACCATT 61.581 55.000 20.16 0.00 35.56 3.16
1560 1577 6.678878 ACATATTAGTGAGATATGTCGCGTT 58.321 36.000 5.77 0.00 43.62 4.84
1631 1648 1.674441 CCGCATCTGAACTGCAATGAT 59.326 47.619 4.34 0.00 39.64 2.45
1644 1661 2.436646 CCGAACAAGCCCGCATCT 60.437 61.111 0.00 0.00 0.00 2.90
1664 1681 2.631062 AGTGTACCCATTCGTGTCTTCA 59.369 45.455 0.00 0.00 0.00 3.02
1674 1691 2.158534 TGAACAGCCAAGTGTACCCATT 60.159 45.455 0.00 0.00 0.00 3.16
1772 1789 3.958798 CCAACGGAAAGACCTCCTCTATA 59.041 47.826 0.00 0.00 36.31 1.31
1827 1844 0.683973 AGTGTCTCCTCAGCCTTGTG 59.316 55.000 0.00 0.00 0.00 3.33
1829 1846 1.480137 CCTAGTGTCTCCTCAGCCTTG 59.520 57.143 0.00 0.00 0.00 3.61
1913 1930 1.808891 CGTTCAAACTCCTCCACCGTT 60.809 52.381 0.00 0.00 0.00 4.44
1944 1961 9.685276 TTGGACTTGATATGTTTCAATCATAGT 57.315 29.630 0.00 0.00 35.20 2.12
1987 2004 1.153549 CGCTTCTCCCACAGGCTAC 60.154 63.158 0.00 0.00 0.00 3.58
2038 2055 3.328931 AGTCTGCAGAAATGGGAAGAAGA 59.671 43.478 20.19 0.00 0.00 2.87
2069 2086 0.962356 CAGCATTGAACCCCTCGCTT 60.962 55.000 0.00 0.00 0.00 4.68
2201 2219 2.800250 AGCAATTTAGGCTGCTTGAGT 58.200 42.857 0.00 0.00 46.71 3.41
2405 2433 5.647658 ACATGGTAACTACACATCATGGTTG 59.352 40.000 0.00 0.00 37.05 3.77
2443 2471 4.397420 TGTAGTTGACTTCACATGGCAAT 58.603 39.130 0.00 0.00 0.00 3.56
2517 2953 7.987750 TGGCAACTACAGTTCATTAAACATA 57.012 32.000 0.00 0.00 37.72 2.29
3115 3662 4.050553 CTCATCGTGCACAACCAAAATTT 58.949 39.130 18.64 0.00 0.00 1.82
3117 3665 2.884012 TCTCATCGTGCACAACCAAAAT 59.116 40.909 18.64 0.00 0.00 1.82
3131 3679 2.159310 GGTTGACTCTGGTCTCTCATCG 60.159 54.545 0.00 0.00 42.54 3.84
3224 3772 2.743928 GCAACCCTCGCTGTCTGG 60.744 66.667 0.00 0.00 0.00 3.86
3225 3773 2.031012 TGCAACCCTCGCTGTCTG 59.969 61.111 0.00 0.00 0.00 3.51
3379 3928 1.610522 GTGTGCTTGCTGTTCCAGATT 59.389 47.619 0.00 0.00 32.44 2.40
3450 3999 7.745717 TCCAATCCCGATTTGTATCTTATCTT 58.254 34.615 0.00 0.00 0.00 2.40
3593 5819 4.639310 CCTCAAGAGTCATTCTCCCATTTG 59.361 45.833 0.00 0.00 43.71 2.32
3657 5886 0.958382 ACAACACACGTGGCAACTGT 60.958 50.000 21.57 11.74 37.61 3.55
3674 5903 7.890515 TGAAATAACATGGCAAATTCAGTACA 58.109 30.769 0.00 0.00 0.00 2.90
3710 5939 2.826128 AGATTCAGTAGAACAGGCACGA 59.174 45.455 0.00 0.00 36.39 4.35
3718 5947 7.559590 AATAACATGGCAGATTCAGTAGAAC 57.440 36.000 0.00 0.00 36.39 3.01
3757 5986 4.443457 GGCAGATTCAGTAGAACAGGCATA 60.443 45.833 0.00 0.00 36.39 3.14
3793 6022 6.036517 CAGTAGAACTAACATGGCAGATTCAC 59.963 42.308 0.00 3.16 0.00 3.18
3841 6071 0.747255 ATCTACGCGATGGCAGACTT 59.253 50.000 15.93 0.00 39.92 3.01
3899 6148 7.112984 GTGATCGTTTCAACTTGTTTTCCATAC 59.887 37.037 0.00 0.00 35.70 2.39
4003 6256 3.963383 TCGTTCTTTCTTGTTTGGCTC 57.037 42.857 0.00 0.00 0.00 4.70
4012 6266 8.771766 GGTTAGTGAAAGTTATCGTTCTTTCTT 58.228 33.333 15.33 8.71 45.36 2.52
4137 6392 4.762251 ACAACCTCAAAGCTTATGAAGACC 59.238 41.667 0.00 0.00 0.00 3.85
4138 6393 5.948992 ACAACCTCAAAGCTTATGAAGAC 57.051 39.130 0.00 0.00 0.00 3.01
4139 6394 6.061441 TCAACAACCTCAAAGCTTATGAAGA 58.939 36.000 0.00 0.00 0.00 2.87
4141 6396 6.489700 TCATCAACAACCTCAAAGCTTATGAA 59.510 34.615 0.00 0.00 0.00 2.57
4142 6397 6.003326 TCATCAACAACCTCAAAGCTTATGA 58.997 36.000 0.00 5.32 0.00 2.15
4143 6398 6.258230 TCATCAACAACCTCAAAGCTTATG 57.742 37.500 0.00 0.57 0.00 1.90
4144 6399 6.491403 ACTTCATCAACAACCTCAAAGCTTAT 59.509 34.615 0.00 0.00 0.00 1.73
4145 6400 5.827797 ACTTCATCAACAACCTCAAAGCTTA 59.172 36.000 0.00 0.00 0.00 3.09
4148 6403 4.574599 ACTTCATCAACAACCTCAAAGC 57.425 40.909 0.00 0.00 0.00 3.51
4197 7081 0.815213 TGCAGTGCGTTCAGAAGCTT 60.815 50.000 11.20 0.00 0.00 3.74
4215 7099 3.495193 CAACGATTTGAGGTGCTTGATG 58.505 45.455 0.00 0.00 34.24 3.07
4279 7163 0.110295 CACCACAGGACCCACATGAA 59.890 55.000 0.00 0.00 34.19 2.57
4449 7338 4.020543 ACTTTTGGACACCTGTTGCTTTA 58.979 39.130 0.00 0.00 0.00 1.85
4499 7393 8.986477 GATGGCAACTTCTTTTAATTACACAT 57.014 30.769 0.00 0.00 37.74 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.