Multiple sequence alignment - TraesCS4D01G216200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G216200 chr4D 100.000 3686 0 0 1 3686 370304853 370301168 0.000000e+00 6807
1 TraesCS4D01G216200 chr4A 95.255 3309 113 26 368 3661 93979543 93982822 0.000000e+00 5201
2 TraesCS4D01G216200 chr4B 96.310 3062 86 13 646 3686 455365813 455362758 0.000000e+00 5003
3 TraesCS4D01G216200 chr4B 86.061 165 7 9 480 638 455365942 455365788 2.950000e-36 163
4 TraesCS4D01G216200 chr5D 86.835 357 39 3 3 358 417382692 417382343 3.450000e-105 392
5 TraesCS4D01G216200 chr1A 88.545 323 36 1 12 333 153332193 153331871 1.240000e-104 390
6 TraesCS4D01G216200 chr1A 86.319 307 39 3 5 309 344116738 344116433 7.630000e-87 331
7 TraesCS4D01G216200 chr1A 83.380 355 45 9 3 356 113544719 113544378 2.140000e-82 316
8 TraesCS4D01G216200 chr1A 79.771 262 32 15 3388 3643 441235353 441235107 1.760000e-38 171
9 TraesCS4D01G216200 chr1A 80.556 216 25 14 3395 3604 554285651 554285855 2.290000e-32 150
10 TraesCS4D01G216200 chr1B 88.742 302 34 0 4 305 582109397 582109698 1.620000e-98 370
11 TraesCS4D01G216200 chr7D 88.716 257 25 3 92 345 236834258 236834513 9.940000e-81 311
12 TraesCS4D01G216200 chr7D 80.556 252 37 9 3398 3639 53339286 53339037 2.260000e-42 183
13 TraesCS4D01G216200 chr3D 85.324 293 40 3 3 294 580016831 580016541 2.150000e-77 300
14 TraesCS4D01G216200 chr2B 84.950 299 38 5 61 356 19323609 19323315 2.780000e-76 296
15 TraesCS4D01G216200 chr2B 83.274 281 30 8 5 281 686463936 686464203 3.680000e-60 243
16 TraesCS4D01G216200 chr2B 80.488 328 40 8 3 309 24282022 24281698 2.860000e-56 230
17 TraesCS4D01G216200 chr7A 81.461 356 56 6 3 357 57095103 57095449 2.170000e-72 283
18 TraesCS4D01G216200 chr1D 80.426 235 35 7 3398 3623 120050564 120050332 6.330000e-38 169
19 TraesCS4D01G216200 chr5A 79.134 254 33 14 3388 3633 6489296 6489055 1.370000e-34 158
20 TraesCS4D01G216200 chr2D 79.237 236 41 8 3388 3620 1957230 1957000 1.370000e-34 158
21 TraesCS4D01G216200 chr2D 81.098 164 23 8 3486 3644 116915211 116915371 1.390000e-24 124
22 TraesCS4D01G216200 chr6D 78.571 238 32 14 3385 3619 435069189 435069410 4.960000e-29 139
23 TraesCS4D01G216200 chr6D 91.837 98 8 0 2728 2825 69940705 69940802 1.790000e-28 137
24 TraesCS4D01G216200 chr6B 90.816 98 9 0 2728 2825 144959318 144959415 8.310000e-27 132
25 TraesCS4D01G216200 chr3B 83.607 122 17 2 3483 3601 13503744 13503623 1.080000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G216200 chr4D 370301168 370304853 3685 True 6807 6807 100.0000 1 3686 1 chr4D.!!$R1 3685
1 TraesCS4D01G216200 chr4A 93979543 93982822 3279 False 5201 5201 95.2550 368 3661 1 chr4A.!!$F1 3293
2 TraesCS4D01G216200 chr4B 455362758 455365942 3184 True 2583 5003 91.1855 480 3686 2 chr4B.!!$R1 3206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.041238 TGGAGGTGAAGGACTCGGAT 59.959 55.0 0.00 0.00 34.58 4.18 F
337 338 0.109319 CCGCCTGGGTCAAAATTTCG 60.109 55.0 0.00 0.00 0.00 3.46 F
352 353 0.249155 TTTCGTGACCGGTCAGTGAC 60.249 55.0 37.04 23.44 40.75 3.67 F
432 433 0.834687 TGGCCTTTGTAGACGGGTCT 60.835 55.0 3.32 6.57 43.40 3.85 F
2220 2261 0.747283 AGGAGCTACACCGGTACTCG 60.747 60.0 6.87 0.00 32.82 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1106 1.000612 AAGAGAGGAGGACGGGGAC 59.999 63.158 0.00 0.0 0.00 4.46 R
1179 1220 1.680207 CAGAGCATGGACTCGATCAGA 59.320 52.381 0.00 0.0 41.77 3.27 R
2102 2143 2.067605 ACCACCGTCACCACCTTGA 61.068 57.895 0.00 0.0 0.00 3.02 R
2388 2429 1.522355 CAGCGGCACCATCTCGAAT 60.522 57.895 1.45 0.0 0.00 3.34 R
3084 3126 3.323691 TCGTCCCTGTCTCTGATTTTTCA 59.676 43.478 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.758737 ACCCGGACGACCATCTCC 60.759 66.667 0.73 0.00 35.59 3.71
18 19 2.442272 CCCGGACGACCATCTCCT 60.442 66.667 0.73 0.00 35.59 3.69
19 20 2.491022 CCCGGACGACCATCTCCTC 61.491 68.421 0.73 0.00 35.59 3.71
20 21 2.491022 CCGGACGACCATCTCCTCC 61.491 68.421 0.00 0.00 35.59 4.30
21 22 1.454111 CGGACGACCATCTCCTCCT 60.454 63.158 4.48 0.00 35.59 3.69
22 23 1.448922 CGGACGACCATCTCCTCCTC 61.449 65.000 4.48 0.00 35.59 3.71
23 24 1.448922 GGACGACCATCTCCTCCTCG 61.449 65.000 0.00 0.00 35.97 4.63
24 25 1.448922 GACGACCATCTCCTCCTCGG 61.449 65.000 0.00 0.00 0.00 4.63
25 26 2.196925 CGACCATCTCCTCCTCGGG 61.197 68.421 0.00 0.00 0.00 5.14
26 27 1.834822 GACCATCTCCTCCTCGGGG 60.835 68.421 0.00 0.00 32.98 5.73
27 28 3.237741 CCATCTCCTCCTCGGGGC 61.238 72.222 0.00 0.00 31.12 5.80
28 29 3.237741 CATCTCCTCCTCGGGGCC 61.238 72.222 0.00 0.00 31.12 5.80
29 30 4.924187 ATCTCCTCCTCGGGGCCG 62.924 72.222 0.00 0.00 41.35 6.13
37 38 4.569180 CTCGGGGCCGCATGGAAT 62.569 66.667 21.08 0.00 39.59 3.01
48 49 4.073201 ATGGAATGAGCTCGGGGT 57.927 55.556 9.64 0.00 0.00 4.95
49 50 1.832912 ATGGAATGAGCTCGGGGTC 59.167 57.895 7.76 7.76 40.08 4.46
50 51 2.032860 ATGGAATGAGCTCGGGGTCG 62.033 60.000 10.38 0.00 42.30 4.79
51 52 2.423898 GGAATGAGCTCGGGGTCGA 61.424 63.158 10.38 0.00 42.30 4.20
52 53 1.742768 GAATGAGCTCGGGGTCGAT 59.257 57.895 10.38 0.11 45.04 3.59
53 54 0.959553 GAATGAGCTCGGGGTCGATA 59.040 55.000 10.38 0.00 45.04 2.92
54 55 0.962489 AATGAGCTCGGGGTCGATAG 59.038 55.000 10.38 0.00 45.04 2.08
55 56 0.110678 ATGAGCTCGGGGTCGATAGA 59.889 55.000 10.38 0.00 45.04 1.98
69 70 3.491342 TCGATAGATCTGGAGGTGAAGG 58.509 50.000 5.18 0.00 42.67 3.46
70 71 3.138468 TCGATAGATCTGGAGGTGAAGGA 59.862 47.826 5.18 0.00 42.67 3.36
71 72 3.254657 CGATAGATCTGGAGGTGAAGGAC 59.745 52.174 5.18 0.00 39.76 3.85
72 73 2.938428 AGATCTGGAGGTGAAGGACT 57.062 50.000 0.00 0.00 0.00 3.85
73 74 2.745968 AGATCTGGAGGTGAAGGACTC 58.254 52.381 0.00 0.00 0.00 3.36
74 75 1.407258 GATCTGGAGGTGAAGGACTCG 59.593 57.143 0.00 0.00 34.58 4.18
75 76 0.612174 TCTGGAGGTGAAGGACTCGG 60.612 60.000 0.00 0.00 34.58 4.63
76 77 0.612174 CTGGAGGTGAAGGACTCGGA 60.612 60.000 0.00 0.00 34.58 4.55
77 78 0.041238 TGGAGGTGAAGGACTCGGAT 59.959 55.000 0.00 0.00 34.58 4.18
78 79 0.747852 GGAGGTGAAGGACTCGGATC 59.252 60.000 0.00 0.00 34.58 3.36
79 80 0.747852 GAGGTGAAGGACTCGGATCC 59.252 60.000 0.00 0.00 39.28 3.36
80 81 1.038130 AGGTGAAGGACTCGGATCCG 61.038 60.000 28.62 28.62 44.22 4.18
81 82 1.227002 GTGAAGGACTCGGATCCGC 60.227 63.158 29.62 15.32 44.22 5.54
82 83 1.379977 TGAAGGACTCGGATCCGCT 60.380 57.895 29.62 17.34 44.22 5.52
83 84 1.066587 GAAGGACTCGGATCCGCTG 59.933 63.158 29.62 24.19 44.22 5.18
84 85 2.962697 GAAGGACTCGGATCCGCTGC 62.963 65.000 29.62 20.32 44.22 5.25
85 86 4.593864 GGACTCGGATCCGCTGCC 62.594 72.222 29.62 23.23 39.59 4.85
86 87 4.593864 GACTCGGATCCGCTGCCC 62.594 72.222 29.62 14.74 39.59 5.36
103 104 2.664185 CGCCATGCCGGAGATGAG 60.664 66.667 5.05 2.02 36.49 2.90
104 105 2.976903 GCCATGCCGGAGATGAGC 60.977 66.667 5.05 8.45 36.56 4.26
105 106 2.827423 CCATGCCGGAGATGAGCT 59.173 61.111 5.05 0.00 36.56 4.09
106 107 1.147824 CCATGCCGGAGATGAGCTT 59.852 57.895 5.05 0.00 36.56 3.74
107 108 1.164662 CCATGCCGGAGATGAGCTTG 61.165 60.000 5.05 0.00 36.56 4.01
108 109 1.147824 ATGCCGGAGATGAGCTTGG 59.852 57.895 5.05 0.00 0.00 3.61
109 110 2.203126 GCCGGAGATGAGCTTGGG 60.203 66.667 5.05 0.00 0.00 4.12
110 111 3.036429 GCCGGAGATGAGCTTGGGT 62.036 63.158 5.05 0.00 0.00 4.51
111 112 1.153289 CCGGAGATGAGCTTGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
112 113 1.153289 CGGAGATGAGCTTGGGTGG 60.153 63.158 0.00 0.00 0.00 4.61
113 114 1.452833 GGAGATGAGCTTGGGTGGC 60.453 63.158 0.00 0.00 0.00 5.01
114 115 1.817099 GAGATGAGCTTGGGTGGCG 60.817 63.158 0.00 0.00 34.52 5.69
115 116 2.825836 GATGAGCTTGGGTGGCGG 60.826 66.667 0.00 0.00 34.52 6.13
116 117 3.329542 GATGAGCTTGGGTGGCGGA 62.330 63.158 0.00 0.00 34.52 5.54
117 118 3.335356 ATGAGCTTGGGTGGCGGAG 62.335 63.158 0.00 0.00 34.52 4.63
118 119 4.785453 GAGCTTGGGTGGCGGAGG 62.785 72.222 0.00 0.00 34.52 4.30
120 121 4.785453 GCTTGGGTGGCGGAGGAG 62.785 72.222 0.00 0.00 0.00 3.69
121 122 3.003173 CTTGGGTGGCGGAGGAGA 61.003 66.667 0.00 0.00 0.00 3.71
122 123 3.003173 TTGGGTGGCGGAGGAGAG 61.003 66.667 0.00 0.00 0.00 3.20
123 124 3.846405 TTGGGTGGCGGAGGAGAGT 62.846 63.158 0.00 0.00 0.00 3.24
124 125 3.775654 GGGTGGCGGAGGAGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
125 126 3.775654 GGTGGCGGAGGAGAGTGG 61.776 72.222 0.00 0.00 0.00 4.00
126 127 2.680352 GTGGCGGAGGAGAGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
127 128 2.363018 TGGCGGAGGAGAGTGGAG 60.363 66.667 0.00 0.00 0.00 3.86
128 129 3.151022 GGCGGAGGAGAGTGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
129 130 3.151022 GCGGAGGAGAGTGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
130 131 2.443016 CGGAGGAGAGTGGAGGGG 60.443 72.222 0.00 0.00 0.00 4.79
131 132 2.997584 CGGAGGAGAGTGGAGGGGA 61.998 68.421 0.00 0.00 0.00 4.81
132 133 1.075600 GGAGGAGAGTGGAGGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
133 134 1.700985 GAGGAGAGTGGAGGGGAGT 59.299 63.158 0.00 0.00 0.00 3.85
134 135 0.686112 GAGGAGAGTGGAGGGGAGTG 60.686 65.000 0.00 0.00 0.00 3.51
135 136 1.687493 GGAGAGTGGAGGGGAGTGG 60.687 68.421 0.00 0.00 0.00 4.00
136 137 1.388531 GAGAGTGGAGGGGAGTGGA 59.611 63.158 0.00 0.00 0.00 4.02
137 138 0.686112 GAGAGTGGAGGGGAGTGGAG 60.686 65.000 0.00 0.00 0.00 3.86
138 139 1.079438 GAGTGGAGGGGAGTGGAGT 59.921 63.158 0.00 0.00 0.00 3.85
139 140 1.229336 AGTGGAGGGGAGTGGAGTG 60.229 63.158 0.00 0.00 0.00 3.51
140 141 1.229209 GTGGAGGGGAGTGGAGTGA 60.229 63.158 0.00 0.00 0.00 3.41
141 142 0.836400 GTGGAGGGGAGTGGAGTGAA 60.836 60.000 0.00 0.00 0.00 3.18
142 143 0.545309 TGGAGGGGAGTGGAGTGAAG 60.545 60.000 0.00 0.00 0.00 3.02
143 144 0.545548 GGAGGGGAGTGGAGTGAAGT 60.546 60.000 0.00 0.00 0.00 3.01
144 145 0.610687 GAGGGGAGTGGAGTGAAGTG 59.389 60.000 0.00 0.00 0.00 3.16
145 146 0.838122 AGGGGAGTGGAGTGAAGTGG 60.838 60.000 0.00 0.00 0.00 4.00
146 147 1.003233 GGGAGTGGAGTGAAGTGGC 60.003 63.158 0.00 0.00 0.00 5.01
147 148 1.484444 GGGAGTGGAGTGAAGTGGCT 61.484 60.000 0.00 0.00 0.00 4.75
148 149 1.267121 GGAGTGGAGTGAAGTGGCTA 58.733 55.000 0.00 0.00 0.00 3.93
149 150 1.205893 GGAGTGGAGTGAAGTGGCTAG 59.794 57.143 0.00 0.00 0.00 3.42
150 151 1.205893 GAGTGGAGTGAAGTGGCTAGG 59.794 57.143 0.00 0.00 0.00 3.02
151 152 0.250513 GTGGAGTGAAGTGGCTAGGG 59.749 60.000 0.00 0.00 0.00 3.53
152 153 0.178903 TGGAGTGAAGTGGCTAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
153 154 0.984995 GGAGTGAAGTGGCTAGGGTT 59.015 55.000 0.00 0.00 0.00 4.11
154 155 1.351350 GGAGTGAAGTGGCTAGGGTTT 59.649 52.381 0.00 0.00 0.00 3.27
155 156 2.427506 GAGTGAAGTGGCTAGGGTTTG 58.572 52.381 0.00 0.00 0.00 2.93
156 157 1.073923 AGTGAAGTGGCTAGGGTTTGG 59.926 52.381 0.00 0.00 0.00 3.28
157 158 1.145571 TGAAGTGGCTAGGGTTTGGT 58.854 50.000 0.00 0.00 0.00 3.67
158 159 1.073284 TGAAGTGGCTAGGGTTTGGTC 59.927 52.381 0.00 0.00 0.00 4.02
159 160 0.404426 AAGTGGCTAGGGTTTGGTCC 59.596 55.000 0.00 0.00 0.00 4.46
160 161 1.376812 GTGGCTAGGGTTTGGTCCG 60.377 63.158 0.00 0.00 0.00 4.79
161 162 2.271173 GGCTAGGGTTTGGTCCGG 59.729 66.667 0.00 0.00 0.00 5.14
162 163 2.437895 GCTAGGGTTTGGTCCGGC 60.438 66.667 0.00 0.00 0.00 6.13
163 164 2.125269 CTAGGGTTTGGTCCGGCG 60.125 66.667 0.00 0.00 0.00 6.46
164 165 2.604079 TAGGGTTTGGTCCGGCGA 60.604 61.111 9.30 0.00 0.00 5.54
165 166 2.573609 CTAGGGTTTGGTCCGGCGAG 62.574 65.000 9.30 0.00 0.00 5.03
179 180 3.154473 CGAGCGGATGGGGAGGAA 61.154 66.667 0.00 0.00 0.00 3.36
180 181 2.511452 CGAGCGGATGGGGAGGAAT 61.511 63.158 0.00 0.00 0.00 3.01
181 182 1.185618 CGAGCGGATGGGGAGGAATA 61.186 60.000 0.00 0.00 0.00 1.75
182 183 1.280457 GAGCGGATGGGGAGGAATAT 58.720 55.000 0.00 0.00 0.00 1.28
183 184 2.467880 GAGCGGATGGGGAGGAATATA 58.532 52.381 0.00 0.00 0.00 0.86
184 185 3.041946 GAGCGGATGGGGAGGAATATAT 58.958 50.000 0.00 0.00 0.00 0.86
185 186 2.774234 AGCGGATGGGGAGGAATATATG 59.226 50.000 0.00 0.00 0.00 1.78
186 187 2.505819 GCGGATGGGGAGGAATATATGT 59.494 50.000 0.00 0.00 0.00 2.29
187 188 3.682718 GCGGATGGGGAGGAATATATGTG 60.683 52.174 0.00 0.00 0.00 3.21
188 189 3.118261 CGGATGGGGAGGAATATATGTGG 60.118 52.174 0.00 0.00 0.00 4.17
189 190 3.203040 GGATGGGGAGGAATATATGTGGG 59.797 52.174 0.00 0.00 0.00 4.61
190 191 3.377154 TGGGGAGGAATATATGTGGGT 57.623 47.619 0.00 0.00 0.00 4.51
191 192 3.256704 TGGGGAGGAATATATGTGGGTC 58.743 50.000 0.00 0.00 0.00 4.46
192 193 2.236395 GGGGAGGAATATATGTGGGTCG 59.764 54.545 0.00 0.00 0.00 4.79
193 194 2.236395 GGGAGGAATATATGTGGGTCGG 59.764 54.545 0.00 0.00 0.00 4.79
194 195 3.170717 GGAGGAATATATGTGGGTCGGA 58.829 50.000 0.00 0.00 0.00 4.55
195 196 3.775316 GGAGGAATATATGTGGGTCGGAT 59.225 47.826 0.00 0.00 0.00 4.18
196 197 4.383118 GGAGGAATATATGTGGGTCGGATG 60.383 50.000 0.00 0.00 0.00 3.51
197 198 3.519510 AGGAATATATGTGGGTCGGATGG 59.480 47.826 0.00 0.00 0.00 3.51
198 199 3.517901 GGAATATATGTGGGTCGGATGGA 59.482 47.826 0.00 0.00 0.00 3.41
199 200 4.504858 GAATATATGTGGGTCGGATGGAC 58.495 47.826 0.00 0.00 45.31 4.02
206 207 2.509336 GTCGGATGGACCAGCGTG 60.509 66.667 3.13 0.00 39.90 5.34
207 208 3.770040 TCGGATGGACCAGCGTGG 61.770 66.667 3.13 2.92 45.02 4.94
208 209 4.838152 CGGATGGACCAGCGTGGG 62.838 72.222 3.13 1.36 43.37 4.61
226 227 4.873129 CCGGATCCGACGTGGCAG 62.873 72.222 35.42 12.07 42.83 4.85
227 228 4.873129 CGGATCCGACGTGGCAGG 62.873 72.222 30.62 5.50 42.83 4.85
247 248 4.926162 TGCTCGGGCGCCCCTATA 62.926 66.667 39.24 20.85 42.67 1.31
248 249 3.391382 GCTCGGGCGCCCCTATAT 61.391 66.667 39.24 0.00 42.67 0.86
249 250 2.893398 CTCGGGCGCCCCTATATC 59.107 66.667 39.24 13.53 42.67 1.63
250 251 1.982395 CTCGGGCGCCCCTATATCA 60.982 63.158 39.24 13.33 42.67 2.15
251 252 1.949847 CTCGGGCGCCCCTATATCAG 61.950 65.000 39.24 22.50 42.67 2.90
252 253 2.269241 GGGCGCCCCTATATCAGC 59.731 66.667 36.64 5.01 41.34 4.26
253 254 2.269241 GGCGCCCCTATATCAGCC 59.731 66.667 18.11 0.00 37.61 4.85
254 255 2.269241 GCGCCCCTATATCAGCCC 59.731 66.667 0.00 0.00 0.00 5.19
255 256 2.990479 CGCCCCTATATCAGCCCC 59.010 66.667 0.00 0.00 0.00 5.80
256 257 1.918293 CGCCCCTATATCAGCCCCA 60.918 63.158 0.00 0.00 0.00 4.96
257 258 1.274703 CGCCCCTATATCAGCCCCAT 61.275 60.000 0.00 0.00 0.00 4.00
258 259 1.893315 GCCCCTATATCAGCCCCATA 58.107 55.000 0.00 0.00 0.00 2.74
259 260 2.422746 GCCCCTATATCAGCCCCATAT 58.577 52.381 0.00 0.00 0.00 1.78
260 261 2.785857 GCCCCTATATCAGCCCCATATT 59.214 50.000 0.00 0.00 0.00 1.28
261 262 3.205282 GCCCCTATATCAGCCCCATATTT 59.795 47.826 0.00 0.00 0.00 1.40
262 263 4.796606 CCCCTATATCAGCCCCATATTTG 58.203 47.826 0.00 0.00 0.00 2.32
263 264 4.386761 CCCCTATATCAGCCCCATATTTGG 60.387 50.000 0.00 0.00 43.23 3.28
276 277 4.275810 CCATATTTGGGCTGGATATGAGG 58.724 47.826 12.68 0.00 39.56 3.86
277 278 2.986534 ATTTGGGCTGGATATGAGGG 57.013 50.000 0.00 0.00 0.00 4.30
278 279 0.852842 TTTGGGCTGGATATGAGGGG 59.147 55.000 0.00 0.00 0.00 4.79
279 280 0.328450 TTGGGCTGGATATGAGGGGT 60.328 55.000 0.00 0.00 0.00 4.95
280 281 1.061905 TGGGCTGGATATGAGGGGTG 61.062 60.000 0.00 0.00 0.00 4.61
281 282 1.073897 GGCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
282 283 1.422161 GGCTGGATATGAGGGGTGCT 61.422 60.000 0.00 0.00 0.00 4.40
283 284 0.250640 GCTGGATATGAGGGGTGCTG 60.251 60.000 0.00 0.00 0.00 4.41
284 285 0.399454 CTGGATATGAGGGGTGCTGG 59.601 60.000 0.00 0.00 0.00 4.85
285 286 0.327480 TGGATATGAGGGGTGCTGGT 60.327 55.000 0.00 0.00 0.00 4.00
286 287 0.398318 GGATATGAGGGGTGCTGGTC 59.602 60.000 0.00 0.00 0.00 4.02
287 288 1.131638 GATATGAGGGGTGCTGGTCA 58.868 55.000 0.00 0.00 0.00 4.02
288 289 1.071385 GATATGAGGGGTGCTGGTCAG 59.929 57.143 0.00 0.00 0.00 3.51
298 299 4.428845 CTGGTCAGCCCAAGCATT 57.571 55.556 0.00 0.00 44.65 3.56
299 300 2.662309 CTGGTCAGCCCAAGCATTT 58.338 52.632 0.00 0.00 44.65 2.32
300 301 0.245539 CTGGTCAGCCCAAGCATTTG 59.754 55.000 0.00 0.00 44.65 2.32
301 302 0.178967 TGGTCAGCCCAAGCATTTGA 60.179 50.000 0.00 0.00 41.50 2.69
302 303 0.529378 GGTCAGCCCAAGCATTTGAG 59.471 55.000 0.00 0.00 43.56 3.02
303 304 0.529378 GTCAGCCCAAGCATTTGAGG 59.471 55.000 0.00 0.00 43.56 3.86
304 305 1.217244 CAGCCCAAGCATTTGAGGC 59.783 57.895 8.99 8.99 44.38 4.70
305 306 1.986210 AGCCCAAGCATTTGAGGCC 60.986 57.895 0.00 0.00 44.77 5.19
306 307 3.022710 GCCCAAGCATTTGAGGCCC 62.023 63.158 0.00 0.00 41.20 5.80
307 308 2.713967 CCCAAGCATTTGAGGCCCG 61.714 63.158 0.00 0.00 36.36 6.13
308 309 1.978617 CCAAGCATTTGAGGCCCGT 60.979 57.895 0.00 0.00 36.36 5.28
309 310 1.535204 CCAAGCATTTGAGGCCCGTT 61.535 55.000 0.00 0.00 36.36 4.44
310 311 0.318120 CAAGCATTTGAGGCCCGTTT 59.682 50.000 0.00 0.00 36.36 3.60
311 312 1.543802 CAAGCATTTGAGGCCCGTTTA 59.456 47.619 0.00 0.00 36.36 2.01
312 313 1.917872 AGCATTTGAGGCCCGTTTAA 58.082 45.000 0.00 0.00 0.00 1.52
313 314 1.818674 AGCATTTGAGGCCCGTTTAAG 59.181 47.619 0.00 0.00 0.00 1.85
314 315 1.135112 GCATTTGAGGCCCGTTTAAGG 60.135 52.381 0.00 0.00 0.00 2.69
320 321 3.493440 GCCCGTTTAAGGCGTCCG 61.493 66.667 0.00 0.00 41.41 4.79
321 322 3.493440 CCCGTTTAAGGCGTCCGC 61.493 66.667 2.45 2.45 41.06 5.54
332 333 2.281208 CGTCCGCCTGGGTCAAAA 60.281 61.111 0.00 0.00 37.00 2.44
333 334 1.674322 CGTCCGCCTGGGTCAAAAT 60.674 57.895 0.00 0.00 37.00 1.82
334 335 1.241315 CGTCCGCCTGGGTCAAAATT 61.241 55.000 0.00 0.00 37.00 1.82
335 336 0.966179 GTCCGCCTGGGTCAAAATTT 59.034 50.000 0.00 0.00 37.00 1.82
336 337 1.067846 GTCCGCCTGGGTCAAAATTTC 60.068 52.381 0.00 0.00 37.00 2.17
337 338 0.109319 CCGCCTGGGTCAAAATTTCG 60.109 55.000 0.00 0.00 0.00 3.46
338 339 0.596082 CGCCTGGGTCAAAATTTCGT 59.404 50.000 0.00 0.00 0.00 3.85
339 340 1.665735 CGCCTGGGTCAAAATTTCGTG 60.666 52.381 0.00 0.00 0.00 4.35
340 341 1.611491 GCCTGGGTCAAAATTTCGTGA 59.389 47.619 0.00 0.00 0.00 4.35
341 342 2.607038 GCCTGGGTCAAAATTTCGTGAC 60.607 50.000 12.64 12.64 42.83 3.67
346 347 2.912366 GTCAAAATTTCGTGACCGGTC 58.088 47.619 28.17 28.17 38.57 4.79
347 348 2.288458 GTCAAAATTTCGTGACCGGTCA 59.712 45.455 33.23 33.23 38.57 4.02
348 349 2.546368 TCAAAATTTCGTGACCGGTCAG 59.454 45.455 37.04 27.77 40.75 3.51
349 350 2.249844 AAATTTCGTGACCGGTCAGT 57.750 45.000 37.04 17.56 40.75 3.41
350 351 1.508632 AATTTCGTGACCGGTCAGTG 58.491 50.000 37.04 29.80 40.75 3.66
351 352 0.677288 ATTTCGTGACCGGTCAGTGA 59.323 50.000 37.04 31.44 40.75 3.41
352 353 0.249155 TTTCGTGACCGGTCAGTGAC 60.249 55.000 37.04 23.44 40.75 3.67
360 361 3.773370 GGTCAGTGACCGGACAGA 58.227 61.111 26.12 0.00 43.14 3.41
361 362 2.277858 GGTCAGTGACCGGACAGAT 58.722 57.895 26.12 0.00 43.14 2.90
362 363 1.471119 GGTCAGTGACCGGACAGATA 58.529 55.000 26.12 0.00 43.14 1.98
363 364 1.405821 GGTCAGTGACCGGACAGATAG 59.594 57.143 26.12 0.00 43.14 2.08
364 365 2.366533 GTCAGTGACCGGACAGATAGA 58.633 52.381 9.46 0.56 36.03 1.98
365 366 2.952978 GTCAGTGACCGGACAGATAGAT 59.047 50.000 9.46 0.00 36.03 1.98
366 367 2.952310 TCAGTGACCGGACAGATAGATG 59.048 50.000 9.46 0.70 0.00 2.90
367 368 1.683917 AGTGACCGGACAGATAGATGC 59.316 52.381 9.46 0.00 0.00 3.91
368 369 1.683917 GTGACCGGACAGATAGATGCT 59.316 52.381 9.46 0.00 0.00 3.79
369 370 1.957177 TGACCGGACAGATAGATGCTC 59.043 52.381 9.46 0.00 0.00 4.26
370 371 2.235016 GACCGGACAGATAGATGCTCT 58.765 52.381 9.46 0.00 0.00 4.09
371 372 1.959985 ACCGGACAGATAGATGCTCTG 59.040 52.381 9.46 0.00 44.60 3.35
372 373 2.234143 CCGGACAGATAGATGCTCTGA 58.766 52.381 0.00 0.00 42.22 3.27
373 374 2.030363 CCGGACAGATAGATGCTCTGAC 60.030 54.545 0.00 1.03 42.22 3.51
374 375 2.884012 CGGACAGATAGATGCTCTGACT 59.116 50.000 6.89 0.00 42.22 3.41
380 381 7.555914 GGACAGATAGATGCTCTGACTATATGA 59.444 40.741 12.02 0.00 42.22 2.15
408 409 4.079844 TGATGATCTATCAAACCCCAGCAA 60.080 41.667 0.00 0.00 42.69 3.91
432 433 0.834687 TGGCCTTTGTAGACGGGTCT 60.835 55.000 3.32 6.57 43.40 3.85
442 443 3.322828 TGTAGACGGGTCTAATATTGGGC 59.677 47.826 9.96 0.00 43.12 5.36
445 446 3.139077 GACGGGTCTAATATTGGGCTTG 58.861 50.000 3.28 0.00 0.00 4.01
448 449 3.684413 CGGGTCTAATATTGGGCTTGTGT 60.684 47.826 3.28 0.00 0.00 3.72
454 455 7.122204 GGTCTAATATTGGGCTTGTGTAAAACT 59.878 37.037 3.28 0.00 0.00 2.66
494 495 7.409343 CGCGGAGTTTGTTTTTCTTTAATCATC 60.409 37.037 0.00 0.00 0.00 2.92
495 496 7.381139 GCGGAGTTTGTTTTTCTTTAATCATCA 59.619 33.333 0.00 0.00 0.00 3.07
496 497 9.410556 CGGAGTTTGTTTTTCTTTAATCATCAT 57.589 29.630 0.00 0.00 0.00 2.45
626 667 9.480053 TCCTTTGCAAAAATAGAAAATTCTCAG 57.520 29.630 13.84 0.00 38.70 3.35
627 668 9.264719 CCTTTGCAAAAATAGAAAATTCTCAGT 57.735 29.630 13.84 0.00 38.70 3.41
630 671 9.683069 TTGCAAAAATAGAAAATTCTCAGTCTC 57.317 29.630 0.00 0.00 38.70 3.36
631 672 9.071276 TGCAAAAATAGAAAATTCTCAGTCTCT 57.929 29.630 0.00 0.00 38.70 3.10
632 673 9.553418 GCAAAAATAGAAAATTCTCAGTCTCTC 57.447 33.333 0.00 0.00 38.70 3.20
639 680 7.930217 AGAAAATTCTCAGTCTCTCTATCTCG 58.070 38.462 0.00 0.00 29.94 4.04
640 681 6.633500 AAATTCTCAGTCTCTCTATCTCGG 57.367 41.667 0.00 0.00 0.00 4.63
641 682 4.764050 TTCTCAGTCTCTCTATCTCGGT 57.236 45.455 0.00 0.00 0.00 4.69
642 683 4.764050 TCTCAGTCTCTCTATCTCGGTT 57.236 45.455 0.00 0.00 0.00 4.44
643 684 5.105567 TCTCAGTCTCTCTATCTCGGTTT 57.894 43.478 0.00 0.00 0.00 3.27
644 685 5.502079 TCTCAGTCTCTCTATCTCGGTTTT 58.498 41.667 0.00 0.00 0.00 2.43
645 686 5.946972 TCTCAGTCTCTCTATCTCGGTTTTT 59.053 40.000 0.00 0.00 0.00 1.94
646 687 7.110810 TCTCAGTCTCTCTATCTCGGTTTTTA 58.889 38.462 0.00 0.00 0.00 1.52
647 688 7.281324 TCTCAGTCTCTCTATCTCGGTTTTTAG 59.719 40.741 0.00 0.00 0.00 1.85
648 689 7.110810 TCAGTCTCTCTATCTCGGTTTTTAGA 58.889 38.462 0.00 0.00 0.00 2.10
649 690 7.610692 TCAGTCTCTCTATCTCGGTTTTTAGAA 59.389 37.037 0.00 0.00 0.00 2.10
650 691 8.410141 CAGTCTCTCTATCTCGGTTTTTAGAAT 58.590 37.037 0.00 0.00 0.00 2.40
651 692 8.410141 AGTCTCTCTATCTCGGTTTTTAGAATG 58.590 37.037 0.00 0.00 0.00 2.67
652 693 8.407064 GTCTCTCTATCTCGGTTTTTAGAATGA 58.593 37.037 0.00 0.00 0.00 2.57
653 694 9.137459 TCTCTCTATCTCGGTTTTTAGAATGAT 57.863 33.333 0.00 0.00 0.00 2.45
654 695 9.757227 CTCTCTATCTCGGTTTTTAGAATGATT 57.243 33.333 0.00 0.00 0.00 2.57
655 696 9.751542 TCTCTATCTCGGTTTTTAGAATGATTC 57.248 33.333 0.00 0.00 0.00 2.52
656 697 9.757227 CTCTATCTCGGTTTTTAGAATGATTCT 57.243 33.333 12.86 12.86 43.72 2.40
657 698 9.751542 TCTATCTCGGTTTTTAGAATGATTCTC 57.248 33.333 11.53 0.00 41.14 2.87
658 699 6.887376 TCTCGGTTTTTAGAATGATTCTCG 57.113 37.500 11.53 8.05 41.14 4.04
1008 1049 0.968901 ACGAGGAAGCCATGGACGTA 60.969 55.000 18.40 0.00 0.00 3.57
1065 1106 1.203523 GGCTATAGCTCCATCTCCACG 59.796 57.143 23.53 0.00 41.70 4.94
1080 1121 3.659496 ACGTCCCCGTCCTCCTCT 61.659 66.667 0.00 0.00 46.28 3.69
1148 1189 2.046892 CGACTGGGGCCTGTTCTG 60.047 66.667 0.84 0.00 0.00 3.02
1275 1316 2.126618 TGCTACTCCAACGCGTCG 60.127 61.111 14.44 0.00 0.00 5.12
1338 1379 4.771356 CACGACGACACGCCGGAT 62.771 66.667 5.05 0.00 37.00 4.18
1557 1598 1.685765 CCTCGATGGGTCCCACTCA 60.686 63.158 14.57 0.00 35.80 3.41
1611 1652 2.772191 TCCCACCACCACAGCACT 60.772 61.111 0.00 0.00 0.00 4.40
2031 2072 1.078497 CATACTCCACCAAGCCGCA 60.078 57.895 0.00 0.00 0.00 5.69
2102 2143 2.765807 CATGGCCTCTCTCGGGGT 60.766 66.667 3.32 0.00 0.00 4.95
2166 2207 2.909965 GAGGAGGAGGCGAGCGAT 60.910 66.667 0.00 0.00 0.00 4.58
2220 2261 0.747283 AGGAGCTACACCGGTACTCG 60.747 60.000 6.87 0.00 32.82 4.18
2484 2525 1.304217 GGTGGAGGAGACGAGACCA 60.304 63.158 0.00 0.00 0.00 4.02
2680 2721 0.738412 GGAACCTGCTTACGCGCTAA 60.738 55.000 5.73 3.37 39.65 3.09
2891 2932 8.417106 CAATCTACTTCTACTGATTGGCTTCTA 58.583 37.037 0.00 0.00 40.92 2.10
2943 2984 8.853077 ACATATCAGTGAAAGTCAATTCTGAA 57.147 30.769 0.00 0.00 32.95 3.02
2962 3003 4.693283 TGAACTGTGATCCGAATATGACC 58.307 43.478 0.00 0.00 0.00 4.02
3086 3128 3.866651 GCTGACAGAGCTTTTATCCTGA 58.133 45.455 6.65 0.00 45.21 3.86
3440 3500 5.774690 TGAGCTTGGGATGAACAGTAAATTT 59.225 36.000 0.00 0.00 0.00 1.82
3516 3579 3.637998 AATGTTCTCAGTGCTTGCAAG 57.362 42.857 22.44 22.44 0.00 4.01
3606 3669 5.680594 TTGAAATAGCATTTTGGGAGCAT 57.319 34.783 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.758737 GGAGATGGTCGTCCGGGT 60.759 66.667 0.00 0.00 36.30 5.28
1 2 2.442272 AGGAGATGGTCGTCCGGG 60.442 66.667 0.00 0.00 37.97 5.73
5 6 1.448922 CCGAGGAGGAGATGGTCGTC 61.449 65.000 0.00 0.00 45.00 4.20
6 7 1.454111 CCGAGGAGGAGATGGTCGT 60.454 63.158 0.00 0.00 45.00 4.34
7 8 2.196925 CCCGAGGAGGAGATGGTCG 61.197 68.421 0.00 0.00 45.00 4.79
8 9 1.834822 CCCCGAGGAGGAGATGGTC 60.835 68.421 0.00 0.00 45.00 4.02
10 11 3.237741 GCCCCGAGGAGGAGATGG 61.238 72.222 0.00 0.00 45.00 3.51
11 12 3.237741 GGCCCCGAGGAGGAGATG 61.238 72.222 0.00 0.00 45.00 2.90
12 13 4.924187 CGGCCCCGAGGAGGAGAT 62.924 72.222 0.00 0.00 45.00 2.75
20 21 4.569180 ATTCCATGCGGCCCCGAG 62.569 66.667 11.48 0.00 42.83 4.63
21 22 4.873810 CATTCCATGCGGCCCCGA 62.874 66.667 11.48 0.00 42.83 5.14
22 23 4.873810 TCATTCCATGCGGCCCCG 62.874 66.667 1.59 1.59 43.09 5.73
23 24 2.908940 CTCATTCCATGCGGCCCC 60.909 66.667 0.00 0.00 0.00 5.80
24 25 3.599704 GCTCATTCCATGCGGCCC 61.600 66.667 0.00 0.00 0.00 5.80
25 26 2.517875 AGCTCATTCCATGCGGCC 60.518 61.111 0.00 0.00 32.19 6.13
26 27 2.890109 CGAGCTCATTCCATGCGGC 61.890 63.158 15.40 0.00 0.00 6.53
27 28 2.249535 CCGAGCTCATTCCATGCGG 61.250 63.158 15.40 2.05 0.00 5.69
28 29 2.249535 CCCGAGCTCATTCCATGCG 61.250 63.158 15.40 0.00 0.00 4.73
29 30 1.895707 CCCCGAGCTCATTCCATGC 60.896 63.158 15.40 0.00 0.00 4.06
30 31 0.533755 GACCCCGAGCTCATTCCATG 60.534 60.000 15.40 0.00 0.00 3.66
31 32 1.832912 GACCCCGAGCTCATTCCAT 59.167 57.895 15.40 0.00 0.00 3.41
32 33 2.721167 CGACCCCGAGCTCATTCCA 61.721 63.158 15.40 0.00 38.22 3.53
33 34 2.107141 CGACCCCGAGCTCATTCC 59.893 66.667 15.40 0.00 38.22 3.01
34 35 3.207354 TCGACCCCGAGCTCATTC 58.793 61.111 15.40 2.78 40.30 2.67
43 44 1.169577 CTCCAGATCTATCGACCCCG 58.830 60.000 0.00 0.00 37.07 5.73
44 45 1.203075 ACCTCCAGATCTATCGACCCC 60.203 57.143 0.00 0.00 0.00 4.95
45 46 1.889829 CACCTCCAGATCTATCGACCC 59.110 57.143 0.00 0.00 0.00 4.46
46 47 2.865079 TCACCTCCAGATCTATCGACC 58.135 52.381 0.00 0.00 0.00 4.79
47 48 3.254657 CCTTCACCTCCAGATCTATCGAC 59.745 52.174 0.00 0.00 0.00 4.20
48 49 3.138468 TCCTTCACCTCCAGATCTATCGA 59.862 47.826 0.00 0.00 0.00 3.59
49 50 3.254657 GTCCTTCACCTCCAGATCTATCG 59.745 52.174 0.00 0.00 0.00 2.92
50 51 4.479158 AGTCCTTCACCTCCAGATCTATC 58.521 47.826 0.00 0.00 0.00 2.08
51 52 4.479158 GAGTCCTTCACCTCCAGATCTAT 58.521 47.826 0.00 0.00 0.00 1.98
52 53 3.685835 CGAGTCCTTCACCTCCAGATCTA 60.686 52.174 0.00 0.00 0.00 1.98
53 54 2.745968 GAGTCCTTCACCTCCAGATCT 58.254 52.381 0.00 0.00 0.00 2.75
54 55 1.407258 CGAGTCCTTCACCTCCAGATC 59.593 57.143 0.00 0.00 0.00 2.75
55 56 1.479709 CGAGTCCTTCACCTCCAGAT 58.520 55.000 0.00 0.00 0.00 2.90
56 57 0.612174 CCGAGTCCTTCACCTCCAGA 60.612 60.000 0.00 0.00 0.00 3.86
57 58 0.612174 TCCGAGTCCTTCACCTCCAG 60.612 60.000 0.00 0.00 0.00 3.86
58 59 0.041238 ATCCGAGTCCTTCACCTCCA 59.959 55.000 0.00 0.00 0.00 3.86
59 60 0.747852 GATCCGAGTCCTTCACCTCC 59.252 60.000 0.00 0.00 0.00 4.30
60 61 0.747852 GGATCCGAGTCCTTCACCTC 59.252 60.000 0.00 0.00 35.32 3.85
61 62 1.038130 CGGATCCGAGTCCTTCACCT 61.038 60.000 30.62 0.00 42.83 4.00
62 63 1.437986 CGGATCCGAGTCCTTCACC 59.562 63.158 30.62 0.00 42.83 4.02
63 64 1.227002 GCGGATCCGAGTCCTTCAC 60.227 63.158 37.64 12.57 42.83 3.18
64 65 1.379977 AGCGGATCCGAGTCCTTCA 60.380 57.895 37.64 0.00 42.83 3.02
65 66 1.066587 CAGCGGATCCGAGTCCTTC 59.933 63.158 37.64 17.49 42.83 3.46
66 67 3.082579 GCAGCGGATCCGAGTCCTT 62.083 63.158 37.64 11.67 42.83 3.36
67 68 3.532155 GCAGCGGATCCGAGTCCT 61.532 66.667 37.64 21.44 42.83 3.85
68 69 4.593864 GGCAGCGGATCCGAGTCC 62.594 72.222 37.64 26.74 42.83 3.85
69 70 4.593864 GGGCAGCGGATCCGAGTC 62.594 72.222 37.64 27.63 42.83 3.36
85 86 4.240103 TCATCTCCGGCATGGCGG 62.240 66.667 45.10 45.10 37.80 6.13
86 87 2.664185 CTCATCTCCGGCATGGCG 60.664 66.667 32.59 32.59 37.80 5.69
87 88 2.955022 AAGCTCATCTCCGGCATGGC 62.955 60.000 9.69 9.69 37.80 4.40
88 89 1.147824 AAGCTCATCTCCGGCATGG 59.852 57.895 11.98 5.69 40.09 3.66
89 90 1.164662 CCAAGCTCATCTCCGGCATG 61.165 60.000 0.00 1.03 0.00 4.06
90 91 1.147824 CCAAGCTCATCTCCGGCAT 59.852 57.895 0.00 0.00 0.00 4.40
91 92 2.586245 CCAAGCTCATCTCCGGCA 59.414 61.111 0.00 0.00 0.00 5.69
92 93 2.203126 CCCAAGCTCATCTCCGGC 60.203 66.667 0.00 0.00 0.00 6.13
93 94 1.153289 CACCCAAGCTCATCTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
94 95 1.153289 CCACCCAAGCTCATCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
95 96 1.452833 GCCACCCAAGCTCATCTCC 60.453 63.158 0.00 0.00 0.00 3.71
96 97 1.817099 CGCCACCCAAGCTCATCTC 60.817 63.158 0.00 0.00 0.00 2.75
97 98 2.270205 CGCCACCCAAGCTCATCT 59.730 61.111 0.00 0.00 0.00 2.90
98 99 2.825836 CCGCCACCCAAGCTCATC 60.826 66.667 0.00 0.00 0.00 2.92
99 100 3.329889 TCCGCCACCCAAGCTCAT 61.330 61.111 0.00 0.00 0.00 2.90
100 101 4.020617 CTCCGCCACCCAAGCTCA 62.021 66.667 0.00 0.00 0.00 4.26
101 102 4.785453 CCTCCGCCACCCAAGCTC 62.785 72.222 0.00 0.00 0.00 4.09
103 104 4.785453 CTCCTCCGCCACCCAAGC 62.785 72.222 0.00 0.00 0.00 4.01
104 105 3.003173 TCTCCTCCGCCACCCAAG 61.003 66.667 0.00 0.00 0.00 3.61
105 106 3.003173 CTCTCCTCCGCCACCCAA 61.003 66.667 0.00 0.00 0.00 4.12
106 107 4.316823 ACTCTCCTCCGCCACCCA 62.317 66.667 0.00 0.00 0.00 4.51
107 108 3.775654 CACTCTCCTCCGCCACCC 61.776 72.222 0.00 0.00 0.00 4.61
108 109 3.775654 CCACTCTCCTCCGCCACC 61.776 72.222 0.00 0.00 0.00 4.61
109 110 2.680352 TCCACTCTCCTCCGCCAC 60.680 66.667 0.00 0.00 0.00 5.01
110 111 2.363018 CTCCACTCTCCTCCGCCA 60.363 66.667 0.00 0.00 0.00 5.69
111 112 3.151022 CCTCCACTCTCCTCCGCC 61.151 72.222 0.00 0.00 0.00 6.13
112 113 3.151022 CCCTCCACTCTCCTCCGC 61.151 72.222 0.00 0.00 0.00 5.54
113 114 2.443016 CCCCTCCACTCTCCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
114 115 1.075600 CTCCCCTCCACTCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
115 116 0.686112 CACTCCCCTCCACTCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
116 117 1.390125 CACTCCCCTCCACTCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
117 118 1.687493 CCACTCCCCTCCACTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
118 119 0.686112 CTCCACTCCCCTCCACTCTC 60.686 65.000 0.00 0.00 0.00 3.20
119 120 1.390125 CTCCACTCCCCTCCACTCT 59.610 63.158 0.00 0.00 0.00 3.24
120 121 1.079438 ACTCCACTCCCCTCCACTC 59.921 63.158 0.00 0.00 0.00 3.51
121 122 1.229336 CACTCCACTCCCCTCCACT 60.229 63.158 0.00 0.00 0.00 4.00
122 123 0.836400 TTCACTCCACTCCCCTCCAC 60.836 60.000 0.00 0.00 0.00 4.02
123 124 0.545309 CTTCACTCCACTCCCCTCCA 60.545 60.000 0.00 0.00 0.00 3.86
124 125 0.545548 ACTTCACTCCACTCCCCTCC 60.546 60.000 0.00 0.00 0.00 4.30
125 126 0.610687 CACTTCACTCCACTCCCCTC 59.389 60.000 0.00 0.00 0.00 4.30
126 127 0.838122 CCACTTCACTCCACTCCCCT 60.838 60.000 0.00 0.00 0.00 4.79
127 128 1.679898 CCACTTCACTCCACTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
128 129 1.003233 GCCACTTCACTCCACTCCC 60.003 63.158 0.00 0.00 0.00 4.30
129 130 1.205893 CTAGCCACTTCACTCCACTCC 59.794 57.143 0.00 0.00 0.00 3.85
130 131 1.205893 CCTAGCCACTTCACTCCACTC 59.794 57.143 0.00 0.00 0.00 3.51
131 132 1.270907 CCTAGCCACTTCACTCCACT 58.729 55.000 0.00 0.00 0.00 4.00
132 133 0.250513 CCCTAGCCACTTCACTCCAC 59.749 60.000 0.00 0.00 0.00 4.02
133 134 0.178903 ACCCTAGCCACTTCACTCCA 60.179 55.000 0.00 0.00 0.00 3.86
134 135 0.984995 AACCCTAGCCACTTCACTCC 59.015 55.000 0.00 0.00 0.00 3.85
135 136 2.427506 CAAACCCTAGCCACTTCACTC 58.572 52.381 0.00 0.00 0.00 3.51
136 137 1.073923 CCAAACCCTAGCCACTTCACT 59.926 52.381 0.00 0.00 0.00 3.41
137 138 1.202891 ACCAAACCCTAGCCACTTCAC 60.203 52.381 0.00 0.00 0.00 3.18
138 139 1.073284 GACCAAACCCTAGCCACTTCA 59.927 52.381 0.00 0.00 0.00 3.02
139 140 1.613520 GGACCAAACCCTAGCCACTTC 60.614 57.143 0.00 0.00 0.00 3.01
140 141 0.404426 GGACCAAACCCTAGCCACTT 59.596 55.000 0.00 0.00 0.00 3.16
141 142 1.838073 CGGACCAAACCCTAGCCACT 61.838 60.000 0.00 0.00 0.00 4.00
142 143 1.376812 CGGACCAAACCCTAGCCAC 60.377 63.158 0.00 0.00 0.00 5.01
143 144 2.598787 CCGGACCAAACCCTAGCCA 61.599 63.158 0.00 0.00 0.00 4.75
144 145 2.271173 CCGGACCAAACCCTAGCC 59.729 66.667 0.00 0.00 0.00 3.93
145 146 2.437895 GCCGGACCAAACCCTAGC 60.438 66.667 5.05 0.00 0.00 3.42
146 147 2.125269 CGCCGGACCAAACCCTAG 60.125 66.667 5.05 0.00 0.00 3.02
147 148 2.604079 TCGCCGGACCAAACCCTA 60.604 61.111 5.05 0.00 0.00 3.53
148 149 4.016706 CTCGCCGGACCAAACCCT 62.017 66.667 5.05 0.00 0.00 4.34
162 163 1.185618 TATTCCTCCCCATCCGCTCG 61.186 60.000 0.00 0.00 0.00 5.03
163 164 1.280457 ATATTCCTCCCCATCCGCTC 58.720 55.000 0.00 0.00 0.00 5.03
164 165 2.642171 TATATTCCTCCCCATCCGCT 57.358 50.000 0.00 0.00 0.00 5.52
165 166 2.505819 ACATATATTCCTCCCCATCCGC 59.494 50.000 0.00 0.00 0.00 5.54
166 167 3.118261 CCACATATATTCCTCCCCATCCG 60.118 52.174 0.00 0.00 0.00 4.18
167 168 3.203040 CCCACATATATTCCTCCCCATCC 59.797 52.174 0.00 0.00 0.00 3.51
168 169 3.852578 ACCCACATATATTCCTCCCCATC 59.147 47.826 0.00 0.00 0.00 3.51
169 170 3.852578 GACCCACATATATTCCTCCCCAT 59.147 47.826 0.00 0.00 0.00 4.00
170 171 3.256704 GACCCACATATATTCCTCCCCA 58.743 50.000 0.00 0.00 0.00 4.96
171 172 2.236395 CGACCCACATATATTCCTCCCC 59.764 54.545 0.00 0.00 0.00 4.81
172 173 2.236395 CCGACCCACATATATTCCTCCC 59.764 54.545 0.00 0.00 0.00 4.30
173 174 3.170717 TCCGACCCACATATATTCCTCC 58.829 50.000 0.00 0.00 0.00 4.30
174 175 4.383118 CCATCCGACCCACATATATTCCTC 60.383 50.000 0.00 0.00 0.00 3.71
175 176 3.519510 CCATCCGACCCACATATATTCCT 59.480 47.826 0.00 0.00 0.00 3.36
176 177 3.517901 TCCATCCGACCCACATATATTCC 59.482 47.826 0.00 0.00 0.00 3.01
177 178 4.504858 GTCCATCCGACCCACATATATTC 58.495 47.826 0.00 0.00 35.23 1.75
178 179 4.553330 GTCCATCCGACCCACATATATT 57.447 45.455 0.00 0.00 35.23 1.28
189 190 2.509336 CACGCTGGTCCATCCGAC 60.509 66.667 16.33 0.00 41.15 4.79
190 191 3.770040 CCACGCTGGTCCATCCGA 61.770 66.667 16.33 0.00 39.52 4.55
191 192 4.838152 CCCACGCTGGTCCATCCG 62.838 72.222 9.75 9.75 39.52 4.18
209 210 4.873129 CTGCCACGTCGGATCCGG 62.873 72.222 32.79 20.49 40.25 5.14
210 211 4.873129 CCTGCCACGTCGGATCCG 62.873 72.222 28.62 28.62 36.56 4.18
235 236 2.269241 GCTGATATAGGGGCGCCC 59.731 66.667 38.57 38.57 45.90 6.13
236 237 2.269241 GGCTGATATAGGGGCGCC 59.731 66.667 21.18 21.18 0.00 6.53
237 238 2.269241 GGGCTGATATAGGGGCGC 59.731 66.667 0.00 0.00 0.00 6.53
238 239 1.274703 ATGGGGCTGATATAGGGGCG 61.275 60.000 0.00 0.00 0.00 6.13
239 240 1.893315 TATGGGGCTGATATAGGGGC 58.107 55.000 0.00 0.00 0.00 5.80
240 241 4.386761 CCAAATATGGGGCTGATATAGGGG 60.387 50.000 0.00 0.00 43.51 4.79
241 242 4.796606 CCAAATATGGGGCTGATATAGGG 58.203 47.826 0.00 0.00 43.51 3.53
255 256 4.275810 CCCTCATATCCAGCCCAAATATG 58.724 47.826 0.00 0.00 35.58 1.78
256 257 3.270433 CCCCTCATATCCAGCCCAAATAT 59.730 47.826 0.00 0.00 0.00 1.28
257 258 2.649312 CCCCTCATATCCAGCCCAAATA 59.351 50.000 0.00 0.00 0.00 1.40
258 259 1.430464 CCCCTCATATCCAGCCCAAAT 59.570 52.381 0.00 0.00 0.00 2.32
259 260 0.852842 CCCCTCATATCCAGCCCAAA 59.147 55.000 0.00 0.00 0.00 3.28
260 261 0.328450 ACCCCTCATATCCAGCCCAA 60.328 55.000 0.00 0.00 0.00 4.12
261 262 1.061905 CACCCCTCATATCCAGCCCA 61.062 60.000 0.00 0.00 0.00 5.36
262 263 1.763770 CACCCCTCATATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
263 264 1.073897 GCACCCCTCATATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
264 265 0.250640 CAGCACCCCTCATATCCAGC 60.251 60.000 0.00 0.00 0.00 4.85
265 266 0.399454 CCAGCACCCCTCATATCCAG 59.601 60.000 0.00 0.00 0.00 3.86
266 267 0.327480 ACCAGCACCCCTCATATCCA 60.327 55.000 0.00 0.00 0.00 3.41
267 268 0.398318 GACCAGCACCCCTCATATCC 59.602 60.000 0.00 0.00 0.00 2.59
268 269 1.071385 CTGACCAGCACCCCTCATATC 59.929 57.143 0.00 0.00 0.00 1.63
269 270 1.135094 CTGACCAGCACCCCTCATAT 58.865 55.000 0.00 0.00 0.00 1.78
270 271 2.607811 CTGACCAGCACCCCTCATA 58.392 57.895 0.00 0.00 0.00 2.15
271 272 3.408229 CTGACCAGCACCCCTCAT 58.592 61.111 0.00 0.00 0.00 2.90
283 284 0.529378 CTCAAATGCTTGGGCTGACC 59.471 55.000 0.00 0.00 39.59 4.02
284 285 0.529378 CCTCAAATGCTTGGGCTGAC 59.471 55.000 0.00 0.00 39.59 3.51
285 286 1.252904 GCCTCAAATGCTTGGGCTGA 61.253 55.000 9.50 0.00 41.76 4.26
286 287 1.217244 GCCTCAAATGCTTGGGCTG 59.783 57.895 9.50 0.00 41.76 4.85
287 288 1.986210 GGCCTCAAATGCTTGGGCT 60.986 57.895 13.86 0.00 43.24 5.19
288 289 2.580815 GGCCTCAAATGCTTGGGC 59.419 61.111 0.00 8.68 43.09 5.36
289 290 2.713967 CGGGCCTCAAATGCTTGGG 61.714 63.158 0.84 0.00 33.01 4.12
290 291 1.535204 AACGGGCCTCAAATGCTTGG 61.535 55.000 0.84 0.00 33.01 3.61
291 292 0.318120 AAACGGGCCTCAAATGCTTG 59.682 50.000 0.84 0.00 0.00 4.01
292 293 1.917872 TAAACGGGCCTCAAATGCTT 58.082 45.000 0.84 0.00 0.00 3.91
293 294 1.818674 CTTAAACGGGCCTCAAATGCT 59.181 47.619 0.84 0.00 0.00 3.79
294 295 1.135112 CCTTAAACGGGCCTCAAATGC 60.135 52.381 0.84 0.00 0.00 3.56
295 296 1.135112 GCCTTAAACGGGCCTCAAATG 60.135 52.381 0.84 0.00 43.49 2.32
296 297 1.182667 GCCTTAAACGGGCCTCAAAT 58.817 50.000 0.84 0.00 43.49 2.32
297 298 1.238625 CGCCTTAAACGGGCCTCAAA 61.239 55.000 0.84 0.00 46.24 2.69
298 299 1.673009 CGCCTTAAACGGGCCTCAA 60.673 57.895 0.84 0.00 46.24 3.02
299 300 2.046700 CGCCTTAAACGGGCCTCA 60.047 61.111 0.84 0.00 46.24 3.86
300 301 2.046604 ACGCCTTAAACGGGCCTC 60.047 61.111 0.84 0.00 46.24 4.70
301 302 2.046604 GACGCCTTAAACGGGCCT 60.047 61.111 0.84 0.00 46.24 5.19
302 303 3.129502 GGACGCCTTAAACGGGCC 61.130 66.667 0.00 0.00 46.24 5.80
303 304 3.493440 CGGACGCCTTAAACGGGC 61.493 66.667 2.99 0.00 45.57 6.13
304 305 3.493440 GCGGACGCCTTAAACGGG 61.493 66.667 5.20 0.00 34.56 5.28
315 316 1.241315 AATTTTGACCCAGGCGGACG 61.241 55.000 0.00 0.00 34.64 4.79
316 317 0.966179 AAATTTTGACCCAGGCGGAC 59.034 50.000 0.00 0.00 34.64 4.79
317 318 1.253100 GAAATTTTGACCCAGGCGGA 58.747 50.000 0.00 0.00 34.64 5.54
318 319 0.109319 CGAAATTTTGACCCAGGCGG 60.109 55.000 0.00 0.00 37.81 6.13
319 320 0.596082 ACGAAATTTTGACCCAGGCG 59.404 50.000 12.54 0.73 0.00 5.52
320 321 1.611491 TCACGAAATTTTGACCCAGGC 59.389 47.619 12.54 0.00 0.00 4.85
321 322 3.282831 GTCACGAAATTTTGACCCAGG 57.717 47.619 12.54 0.00 36.85 4.45
326 327 2.288458 TGACCGGTCACGAAATTTTGAC 59.712 45.455 33.23 12.60 44.60 3.18
327 328 2.546368 CTGACCGGTCACGAAATTTTGA 59.454 45.455 33.23 7.94 44.60 2.69
328 329 2.289547 ACTGACCGGTCACGAAATTTTG 59.710 45.455 33.23 21.27 44.60 2.44
329 330 2.289547 CACTGACCGGTCACGAAATTTT 59.710 45.455 33.23 9.50 44.60 1.82
330 331 1.871039 CACTGACCGGTCACGAAATTT 59.129 47.619 33.23 10.16 44.60 1.82
331 332 1.069513 TCACTGACCGGTCACGAAATT 59.930 47.619 33.23 10.37 44.60 1.82
332 333 0.677288 TCACTGACCGGTCACGAAAT 59.323 50.000 33.23 13.32 44.60 2.17
333 334 0.249155 GTCACTGACCGGTCACGAAA 60.249 55.000 33.23 15.74 44.60 3.46
334 335 1.361271 GTCACTGACCGGTCACGAA 59.639 57.895 33.23 17.55 44.60 3.85
335 336 2.558286 GGTCACTGACCGGTCACGA 61.558 63.158 33.23 27.00 43.14 4.35
336 337 2.049433 GGTCACTGACCGGTCACG 60.049 66.667 33.23 27.66 43.14 4.35
344 345 2.366533 TCTATCTGTCCGGTCACTGAC 58.633 52.381 0.00 0.00 0.00 3.51
345 346 2.801077 TCTATCTGTCCGGTCACTGA 57.199 50.000 0.00 3.05 0.00 3.41
346 347 2.544694 GCATCTATCTGTCCGGTCACTG 60.545 54.545 0.00 0.00 0.00 3.66
347 348 1.683917 GCATCTATCTGTCCGGTCACT 59.316 52.381 0.00 0.00 0.00 3.41
348 349 1.683917 AGCATCTATCTGTCCGGTCAC 59.316 52.381 0.00 0.00 0.00 3.67
349 350 1.957177 GAGCATCTATCTGTCCGGTCA 59.043 52.381 0.00 0.00 0.00 4.02
350 351 2.715737 GAGCATCTATCTGTCCGGTC 57.284 55.000 0.00 0.00 0.00 4.79
364 365 9.788889 TCATCAAAAATCATATAGTCAGAGCAT 57.211 29.630 0.00 0.00 0.00 3.79
365 366 9.788889 ATCATCAAAAATCATATAGTCAGAGCA 57.211 29.630 0.00 0.00 0.00 4.26
392 393 2.807676 ACCTTTGCTGGGGTTTGATAG 58.192 47.619 0.00 0.00 30.80 2.08
442 443 7.535139 CATGGTACCCAATAGTTTTACACAAG 58.465 38.462 10.07 0.00 36.95 3.16
445 446 5.448089 CGCATGGTACCCAATAGTTTTACAC 60.448 44.000 10.07 0.00 36.95 2.90
448 449 3.628487 GCGCATGGTACCCAATAGTTTTA 59.372 43.478 10.07 0.00 36.95 1.52
454 455 1.227704 CCGCGCATGGTACCCAATA 60.228 57.895 10.07 0.00 36.95 1.90
468 469 5.683743 TGATTAAAGAAAAACAAACTCCGCG 59.316 36.000 0.00 0.00 0.00 6.46
494 495 9.874205 TTAAAAAGAAGAAGATAATGGCCAATG 57.126 29.630 10.96 0.00 0.00 2.82
542 543 8.863872 CCGGGAATCTGGTTTATATTAGATTT 57.136 34.615 0.00 0.00 39.31 2.17
626 667 8.407064 TCATTCTAAAAACCGAGATAGAGAGAC 58.593 37.037 0.00 0.00 0.00 3.36
627 668 8.521170 TCATTCTAAAAACCGAGATAGAGAGA 57.479 34.615 0.00 0.00 0.00 3.10
628 669 9.757227 AATCATTCTAAAAACCGAGATAGAGAG 57.243 33.333 0.00 0.00 0.00 3.20
629 670 9.751542 GAATCATTCTAAAAACCGAGATAGAGA 57.248 33.333 0.00 0.00 0.00 3.10
630 671 9.757227 AGAATCATTCTAAAAACCGAGATAGAG 57.243 33.333 0.00 0.00 38.49 2.43
631 672 9.751542 GAGAATCATTCTAAAAACCGAGATAGA 57.248 33.333 0.00 0.00 40.87 1.98
632 673 8.695284 CGAGAATCATTCTAAAAACCGAGATAG 58.305 37.037 0.00 0.00 40.87 2.08
633 674 8.195436 ACGAGAATCATTCTAAAAACCGAGATA 58.805 33.333 10.07 0.00 40.87 1.98
634 675 7.042335 ACGAGAATCATTCTAAAAACCGAGAT 58.958 34.615 10.07 0.00 40.87 2.75
635 676 6.395629 ACGAGAATCATTCTAAAAACCGAGA 58.604 36.000 10.07 0.00 40.87 4.04
636 677 6.648725 ACGAGAATCATTCTAAAAACCGAG 57.351 37.500 10.07 0.00 40.87 4.63
637 678 6.872020 AGAACGAGAATCATTCTAAAAACCGA 59.128 34.615 10.07 0.00 40.87 4.69
638 679 7.061752 AGAACGAGAATCATTCTAAAAACCG 57.938 36.000 0.00 1.09 40.87 4.44
639 680 8.257830 AGAGAACGAGAATCATTCTAAAAACC 57.742 34.615 0.00 0.00 40.87 3.27
640 681 9.748100 GAAGAGAACGAGAATCATTCTAAAAAC 57.252 33.333 0.00 0.00 40.87 2.43
641 682 9.712305 AGAAGAGAACGAGAATCATTCTAAAAA 57.288 29.630 0.00 0.00 40.87 1.94
642 683 9.712305 AAGAAGAGAACGAGAATCATTCTAAAA 57.288 29.630 0.00 0.00 40.87 1.52
643 684 9.144747 CAAGAAGAGAACGAGAATCATTCTAAA 57.855 33.333 0.00 0.00 40.87 1.85
644 685 7.276658 GCAAGAAGAGAACGAGAATCATTCTAA 59.723 37.037 0.00 0.00 40.87 2.10
645 686 6.754209 GCAAGAAGAGAACGAGAATCATTCTA 59.246 38.462 0.00 0.00 40.87 2.10
646 687 5.580297 GCAAGAAGAGAACGAGAATCATTCT 59.420 40.000 0.00 0.00 44.21 2.40
647 688 5.580297 AGCAAGAAGAGAACGAGAATCATTC 59.420 40.000 0.00 0.00 33.17 2.67
648 689 5.486526 AGCAAGAAGAGAACGAGAATCATT 58.513 37.500 0.00 0.00 33.17 2.57
649 690 5.083533 AGCAAGAAGAGAACGAGAATCAT 57.916 39.130 0.00 0.00 33.17 2.45
650 691 4.527509 AGCAAGAAGAGAACGAGAATCA 57.472 40.909 0.00 0.00 33.17 2.57
651 692 6.952935 TTAAGCAAGAAGAGAACGAGAATC 57.047 37.500 0.00 0.00 0.00 2.52
652 693 6.183360 GCATTAAGCAAGAAGAGAACGAGAAT 60.183 38.462 0.00 0.00 44.79 2.40
653 694 5.120830 GCATTAAGCAAGAAGAGAACGAGAA 59.879 40.000 0.00 0.00 44.79 2.87
654 695 4.627467 GCATTAAGCAAGAAGAGAACGAGA 59.373 41.667 0.00 0.00 44.79 4.04
655 696 4.891516 GCATTAAGCAAGAAGAGAACGAG 58.108 43.478 0.00 0.00 44.79 4.18
656 697 4.928661 GCATTAAGCAAGAAGAGAACGA 57.071 40.909 0.00 0.00 44.79 3.85
850 891 6.577239 GCTTATTTATAGTCATGGAGGAGGGG 60.577 46.154 0.00 0.00 0.00 4.79
1008 1049 1.677552 GACCACGTCCTCCATGGTT 59.322 57.895 12.58 0.00 46.86 3.67
1065 1106 1.000612 AAGAGAGGAGGACGGGGAC 59.999 63.158 0.00 0.00 0.00 4.46
1080 1121 2.264480 CCCATGCCGTCGTCAAGA 59.736 61.111 0.00 0.00 0.00 3.02
1179 1220 1.680207 CAGAGCATGGACTCGATCAGA 59.320 52.381 0.00 0.00 41.77 3.27
2102 2143 2.067605 ACCACCGTCACCACCTTGA 61.068 57.895 0.00 0.00 0.00 3.02
2367 2408 4.147449 CTCCCGCGCATCCACTCA 62.147 66.667 8.75 0.00 0.00 3.41
2388 2429 1.522355 CAGCGGCACCATCTCGAAT 60.522 57.895 1.45 0.00 0.00 3.34
2484 2525 0.320771 AGCCGAGCACGATCTTGTTT 60.321 50.000 4.70 0.00 42.66 2.83
2680 2721 5.686159 CTTGCAAAGTTCAGAGTTCAGAT 57.314 39.130 0.00 0.00 39.70 2.90
2786 2827 4.804139 CGGGAACTACACTAACATAGCAAG 59.196 45.833 0.00 0.00 0.00 4.01
2891 2932 5.831702 ACTCAGATTTCTACCGATACGTT 57.168 39.130 0.00 0.00 0.00 3.99
2943 2984 2.956333 TCGGTCATATTCGGATCACAGT 59.044 45.455 0.00 0.00 0.00 3.55
2962 3003 9.463443 TCATATTATGTTTCTACATCACAGTCG 57.537 33.333 3.67 0.00 43.81 4.18
3003 3044 2.786495 CGACACGATCTCCCCTGGG 61.786 68.421 5.50 5.50 0.00 4.45
3075 3117 8.457261 CCTGTCTCTGATTTTTCAGGATAAAAG 58.543 37.037 0.00 0.00 43.28 2.27
3079 3121 5.726308 TCCCTGTCTCTGATTTTTCAGGATA 59.274 40.000 10.10 0.00 43.28 2.59
3080 3122 4.537688 TCCCTGTCTCTGATTTTTCAGGAT 59.462 41.667 10.10 0.00 43.28 3.24
3081 3123 3.909995 TCCCTGTCTCTGATTTTTCAGGA 59.090 43.478 10.10 0.00 43.28 3.86
3083 3125 3.681897 CGTCCCTGTCTCTGATTTTTCAG 59.318 47.826 0.00 0.00 39.00 3.02
3084 3126 3.323691 TCGTCCCTGTCTCTGATTTTTCA 59.676 43.478 0.00 0.00 0.00 2.69
3085 3127 3.926616 TCGTCCCTGTCTCTGATTTTTC 58.073 45.455 0.00 0.00 0.00 2.29
3086 3128 4.020218 TCATCGTCCCTGTCTCTGATTTTT 60.020 41.667 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.