Multiple sequence alignment - TraesCS4D01G215500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G215500 chr4D 100.000 4795 0 0 1 4795 369123896 369119102 0.000000e+00 8855.0
1 TraesCS4D01G215500 chr4D 85.027 187 17 6 267 445 16242623 16242440 3.810000e-41 180.0
2 TraesCS4D01G215500 chr4A 96.177 4368 108 33 459 4782 95370983 95375335 0.000000e+00 7086.0
3 TraesCS4D01G215500 chr4A 91.796 451 31 4 1 450 95363110 95363555 1.470000e-174 623.0
4 TraesCS4D01G215500 chr4B 98.078 2914 54 2 993 3905 454649604 454646692 0.000000e+00 5070.0
5 TraesCS4D01G215500 chr4B 89.524 525 16 7 450 940 454650236 454649717 3.150000e-176 628.0
6 TraesCS4D01G215500 chr4B 92.519 401 22 6 4385 4782 454646151 454645756 6.960000e-158 568.0
7 TraesCS4D01G215500 chr4B 88.201 339 16 4 3950 4279 454646693 454646370 2.710000e-102 383.0
8 TraesCS4D01G215500 chr1D 85.106 188 20 2 263 444 443741851 443741666 8.190000e-43 185.0
9 TraesCS4D01G215500 chr6A 85.405 185 15 4 267 444 23679490 23679311 1.060000e-41 182.0
10 TraesCS4D01G215500 chr6A 100.000 30 0 0 3920 3949 610505170 610505199 6.700000e-04 56.5
11 TraesCS4D01G215500 chr2D 84.737 190 17 4 263 446 360552160 360552343 3.810000e-41 180.0
12 TraesCS4D01G215500 chr3D 84.783 184 12 6 268 445 22917929 22917756 2.290000e-38 171.0
13 TraesCS4D01G215500 chr3D 84.153 183 17 4 267 443 56445142 56444966 2.970000e-37 167.0
14 TraesCS4D01G215500 chr3D 83.784 185 17 6 263 440 475641698 475641520 3.840000e-36 163.0
15 TraesCS4D01G215500 chr3B 83.422 187 17 7 264 444 798560133 798559955 1.380000e-35 161.0
16 TraesCS4D01G215500 chr3B 82.716 81 8 1 370 444 790411181 790411261 3.100000e-07 67.6
17 TraesCS4D01G215500 chr3B 97.059 34 0 1 3919 3951 379119010 379118977 6.700000e-04 56.5
18 TraesCS4D01G215500 chr5A 87.778 90 10 1 35 123 438143257 438143168 2.360000e-18 104.0
19 TraesCS4D01G215500 chr5B 75.658 152 22 3 36 184 394970682 394970543 1.440000e-05 62.1
20 TraesCS4D01G215500 chr3A 100.000 33 0 0 3919 3951 200352730 200352762 1.440000e-05 62.1
21 TraesCS4D01G215500 chr3A 97.059 34 1 0 3919 3952 19493356 19493389 1.860000e-04 58.4
22 TraesCS4D01G215500 chr7A 94.444 36 1 1 3921 3955 51814471 51814506 2.000000e-03 54.7
23 TraesCS4D01G215500 chr2B 92.308 39 0 2 3920 3956 464872532 464872495 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G215500 chr4D 369119102 369123896 4794 True 8855.00 8855 100.0000 1 4795 1 chr4D.!!$R2 4794
1 TraesCS4D01G215500 chr4A 95370983 95375335 4352 False 7086.00 7086 96.1770 459 4782 1 chr4A.!!$F2 4323
2 TraesCS4D01G215500 chr4B 454645756 454650236 4480 True 1662.25 5070 92.0805 450 4782 4 chr4B.!!$R1 4332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.037790 GTGGCGGGATAGAGATGCTC 60.038 60.000 0.00 0.0 0.00 4.26 F
415 416 0.174162 GGACTTGGATGTGCAATGGC 59.826 55.000 0.00 0.0 41.68 4.40 F
525 526 1.738099 CCGACGACAAGAAGGCTGG 60.738 63.158 0.00 0.0 0.00 4.85 F
2145 2265 1.074471 GGAGGCTGAGGGGATGGTA 60.074 63.158 0.00 0.0 0.00 3.25 F
3538 3658 1.649664 CAATGAGTCGGAGGCTCTTG 58.350 55.000 15.23 7.7 40.46 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 2217 1.747355 CCAAGGTTGACATGGATCTGC 59.253 52.381 0.0 0.0 36.27 4.26 R
2145 2265 4.254709 TGCTCGCAGGCACCAAGT 62.255 61.111 0.0 0.0 37.29 3.16 R
2580 2700 5.047802 CACCCTTTGTGTCATCTTAAATGCT 60.048 40.000 0.0 0.0 40.26 3.79 R
3609 3729 0.317603 CGTCCTCAACAACTCGACGT 60.318 55.000 0.0 0.0 40.96 4.34 R
4686 4937 0.836400 AGCGGAAAGAGTCCCTGGAA 60.836 55.000 0.0 0.0 44.60 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.093566 CGGATCTATTGCGAGACGG 57.906 57.895 0.00 0.00 42.53 4.79
19 20 0.311165 CGGATCTATTGCGAGACGGT 59.689 55.000 0.00 0.00 42.53 4.83
20 21 1.534163 CGGATCTATTGCGAGACGGTA 59.466 52.381 0.00 0.00 42.53 4.02
21 22 2.412977 CGGATCTATTGCGAGACGGTAG 60.413 54.545 0.00 0.00 42.53 3.18
22 23 2.812591 GGATCTATTGCGAGACGGTAGA 59.187 50.000 0.00 0.00 0.00 2.59
23 24 3.365164 GGATCTATTGCGAGACGGTAGAC 60.365 52.174 0.00 0.00 0.00 2.59
24 25 2.915349 TCTATTGCGAGACGGTAGACT 58.085 47.619 0.00 0.00 0.00 3.24
25 26 3.276857 TCTATTGCGAGACGGTAGACTT 58.723 45.455 0.00 0.00 0.00 3.01
26 27 4.445453 TCTATTGCGAGACGGTAGACTTA 58.555 43.478 0.00 0.00 0.00 2.24
27 28 4.877823 TCTATTGCGAGACGGTAGACTTAA 59.122 41.667 0.00 0.00 0.00 1.85
28 29 3.921119 TTGCGAGACGGTAGACTTAAA 57.079 42.857 0.00 0.00 0.00 1.52
29 30 3.207474 TGCGAGACGGTAGACTTAAAC 57.793 47.619 0.00 0.00 0.00 2.01
30 31 2.095059 TGCGAGACGGTAGACTTAAACC 60.095 50.000 0.00 0.00 0.00 3.27
31 32 2.163211 GCGAGACGGTAGACTTAAACCT 59.837 50.000 0.00 0.00 33.34 3.50
32 33 3.730362 GCGAGACGGTAGACTTAAACCTC 60.730 52.174 0.00 0.00 33.34 3.85
33 34 3.688673 CGAGACGGTAGACTTAAACCTCT 59.311 47.826 0.00 0.00 33.34 3.69
34 35 4.201802 CGAGACGGTAGACTTAAACCTCTC 60.202 50.000 10.46 10.46 37.06 3.20
35 36 4.015764 AGACGGTAGACTTAAACCTCTCC 58.984 47.826 0.00 0.00 33.34 3.71
36 37 3.095332 ACGGTAGACTTAAACCTCTCCC 58.905 50.000 0.00 0.00 33.34 4.30
37 38 3.245550 ACGGTAGACTTAAACCTCTCCCT 60.246 47.826 0.00 0.00 33.34 4.20
38 39 3.380954 CGGTAGACTTAAACCTCTCCCTC 59.619 52.174 0.00 0.00 33.34 4.30
39 40 3.705579 GGTAGACTTAAACCTCTCCCTCC 59.294 52.174 0.00 0.00 32.72 4.30
40 41 2.835389 AGACTTAAACCTCTCCCTCCC 58.165 52.381 0.00 0.00 0.00 4.30
41 42 1.838715 GACTTAAACCTCTCCCTCCCC 59.161 57.143 0.00 0.00 0.00 4.81
42 43 0.831307 CTTAAACCTCTCCCTCCCCG 59.169 60.000 0.00 0.00 0.00 5.73
43 44 0.117742 TTAAACCTCTCCCTCCCCGT 59.882 55.000 0.00 0.00 0.00 5.28
44 45 1.009997 TAAACCTCTCCCTCCCCGTA 58.990 55.000 0.00 0.00 0.00 4.02
45 46 0.616964 AAACCTCTCCCTCCCCGTAC 60.617 60.000 0.00 0.00 0.00 3.67
46 47 1.807771 AACCTCTCCCTCCCCGTACA 61.808 60.000 0.00 0.00 0.00 2.90
47 48 1.233369 CCTCTCCCTCCCCGTACAT 59.767 63.158 0.00 0.00 0.00 2.29
48 49 0.481567 CCTCTCCCTCCCCGTACATA 59.518 60.000 0.00 0.00 0.00 2.29
49 50 1.077334 CCTCTCCCTCCCCGTACATAT 59.923 57.143 0.00 0.00 0.00 1.78
50 51 2.310945 CCTCTCCCTCCCCGTACATATA 59.689 54.545 0.00 0.00 0.00 0.86
51 52 3.622630 CTCTCCCTCCCCGTACATATAG 58.377 54.545 0.00 0.00 0.00 1.31
52 53 2.100989 CTCCCTCCCCGTACATATAGC 58.899 57.143 0.00 0.00 0.00 2.97
53 54 0.815734 CCCTCCCCGTACATATAGCG 59.184 60.000 0.00 0.00 0.00 4.26
54 55 0.815734 CCTCCCCGTACATATAGCGG 59.184 60.000 0.00 0.00 44.55 5.52
55 56 0.172803 CTCCCCGTACATATAGCGGC 59.827 60.000 0.00 0.00 43.70 6.53
56 57 0.251474 TCCCCGTACATATAGCGGCT 60.251 55.000 7.98 7.98 43.70 5.52
57 58 0.108804 CCCCGTACATATAGCGGCTG 60.109 60.000 13.86 0.00 43.70 4.85
58 59 0.108804 CCCGTACATATAGCGGCTGG 60.109 60.000 13.86 1.99 43.70 4.85
59 60 0.885879 CCGTACATATAGCGGCTGGA 59.114 55.000 13.86 0.00 38.99 3.86
60 61 1.135373 CCGTACATATAGCGGCTGGAG 60.135 57.143 13.86 2.42 38.99 3.86
61 62 1.135373 CGTACATATAGCGGCTGGAGG 60.135 57.143 13.86 4.39 0.00 4.30
62 63 1.204941 GTACATATAGCGGCTGGAGGG 59.795 57.143 13.86 0.90 0.00 4.30
63 64 1.194781 ACATATAGCGGCTGGAGGGG 61.195 60.000 13.86 0.00 0.00 4.79
64 65 2.294078 ATATAGCGGCTGGAGGGGC 61.294 63.158 13.86 0.00 0.00 5.80
84 85 4.418328 TTTGCAGGCCGCCCGTAT 62.418 61.111 15.40 0.00 41.33 3.06
85 86 3.032667 TTTGCAGGCCGCCCGTATA 62.033 57.895 15.40 0.00 41.33 1.47
86 87 2.538512 TTTGCAGGCCGCCCGTATAA 62.539 55.000 15.40 1.40 41.33 0.98
87 88 2.203098 GCAGGCCGCCCGTATAAA 60.203 61.111 5.55 0.00 35.76 1.40
88 89 1.599797 GCAGGCCGCCCGTATAAAT 60.600 57.895 5.55 0.00 35.76 1.40
89 90 1.170290 GCAGGCCGCCCGTATAAATT 61.170 55.000 5.55 0.00 35.76 1.82
90 91 1.314730 CAGGCCGCCCGTATAAATTT 58.685 50.000 5.55 0.00 35.76 1.82
91 92 1.679153 CAGGCCGCCCGTATAAATTTT 59.321 47.619 5.55 0.00 35.76 1.82
92 93 2.879646 CAGGCCGCCCGTATAAATTTTA 59.120 45.455 5.55 0.00 35.76 1.52
93 94 2.880268 AGGCCGCCCGTATAAATTTTAC 59.120 45.455 5.55 0.00 35.76 2.01
94 95 2.349722 GGCCGCCCGTATAAATTTTACG 60.350 50.000 18.11 18.11 41.52 3.18
100 101 2.907393 CGTATAAATTTTACGGGCCGC 58.093 47.619 28.71 3.50 38.94 6.53
101 102 2.545106 CGTATAAATTTTACGGGCCGCT 59.455 45.455 28.71 16.00 38.94 5.52
102 103 3.605231 CGTATAAATTTTACGGGCCGCTG 60.605 47.826 28.71 0.00 38.94 5.18
103 104 0.452585 TAAATTTTACGGGCCGCTGC 59.547 50.000 28.71 0.00 0.00 5.25
104 105 1.528292 AAATTTTACGGGCCGCTGCA 61.528 50.000 28.71 8.58 40.13 4.41
105 106 1.528292 AATTTTACGGGCCGCTGCAA 61.528 50.000 28.71 14.35 40.13 4.08
106 107 1.528292 ATTTTACGGGCCGCTGCAAA 61.528 50.000 28.71 19.11 40.13 3.68
107 108 1.528292 TTTTACGGGCCGCTGCAAAT 61.528 50.000 28.71 7.08 40.13 2.32
108 109 1.528292 TTTACGGGCCGCTGCAAATT 61.528 50.000 28.71 6.20 40.13 1.82
109 110 1.528292 TTACGGGCCGCTGCAAATTT 61.528 50.000 28.71 5.34 40.13 1.82
110 111 2.206515 TACGGGCCGCTGCAAATTTG 62.207 55.000 28.71 14.03 40.13 2.32
111 112 2.343387 GGGCCGCTGCAAATTTGT 59.657 55.556 19.03 0.00 40.13 2.83
112 113 1.737735 GGGCCGCTGCAAATTTGTC 60.738 57.895 19.03 11.87 40.13 3.18
113 114 1.006337 GGCCGCTGCAAATTTGTCA 60.006 52.632 19.03 15.37 40.13 3.58
114 115 1.010419 GGCCGCTGCAAATTTGTCAG 61.010 55.000 25.51 25.51 40.13 3.51
115 116 0.039256 GCCGCTGCAAATTTGTCAGA 60.039 50.000 30.15 11.68 35.66 3.27
116 117 1.689959 CCGCTGCAAATTTGTCAGAC 58.310 50.000 30.15 23.04 35.66 3.51
117 118 1.666888 CCGCTGCAAATTTGTCAGACC 60.667 52.381 30.15 19.30 35.66 3.85
118 119 1.267806 CGCTGCAAATTTGTCAGACCT 59.732 47.619 30.15 0.00 35.66 3.85
119 120 2.669364 GCTGCAAATTTGTCAGACCTG 58.331 47.619 30.15 15.56 35.66 4.00
120 121 2.035066 GCTGCAAATTTGTCAGACCTGT 59.965 45.455 30.15 0.00 35.66 4.00
121 122 3.491447 GCTGCAAATTTGTCAGACCTGTT 60.491 43.478 30.15 0.00 35.66 3.16
122 123 4.293415 CTGCAAATTTGTCAGACCTGTTC 58.707 43.478 25.60 6.84 35.66 3.18
123 124 3.953612 TGCAAATTTGTCAGACCTGTTCT 59.046 39.130 19.03 0.00 33.33 3.01
124 125 5.129634 TGCAAATTTGTCAGACCTGTTCTA 58.870 37.500 19.03 0.00 31.12 2.10
125 126 5.239306 TGCAAATTTGTCAGACCTGTTCTAG 59.761 40.000 19.03 0.00 31.12 2.43
126 127 5.693814 CAAATTTGTCAGACCTGTTCTAGC 58.306 41.667 10.15 0.00 31.12 3.42
127 128 3.402628 TTTGTCAGACCTGTTCTAGCC 57.597 47.619 0.00 0.00 31.12 3.93
128 129 1.267121 TGTCAGACCTGTTCTAGCCC 58.733 55.000 0.00 0.00 31.12 5.19
129 130 0.173708 GTCAGACCTGTTCTAGCCCG 59.826 60.000 0.00 0.00 31.12 6.13
130 131 0.251653 TCAGACCTGTTCTAGCCCGT 60.252 55.000 0.00 0.00 31.12 5.28
131 132 1.005097 TCAGACCTGTTCTAGCCCGTA 59.995 52.381 0.00 0.00 31.12 4.02
132 133 1.822990 CAGACCTGTTCTAGCCCGTAA 59.177 52.381 0.00 0.00 31.12 3.18
133 134 2.232941 CAGACCTGTTCTAGCCCGTAAA 59.767 50.000 0.00 0.00 31.12 2.01
134 135 2.496470 AGACCTGTTCTAGCCCGTAAAG 59.504 50.000 0.00 0.00 30.17 1.85
135 136 1.553704 ACCTGTTCTAGCCCGTAAAGG 59.446 52.381 0.00 0.00 40.63 3.11
145 146 1.519408 CCCGTAAAGGCCCGAATATG 58.481 55.000 0.00 0.00 39.21 1.78
146 147 0.872388 CCGTAAAGGCCCGAATATGC 59.128 55.000 0.00 0.00 0.00 3.14
147 148 1.542547 CCGTAAAGGCCCGAATATGCT 60.543 52.381 0.00 0.00 0.00 3.79
148 149 2.289195 CCGTAAAGGCCCGAATATGCTA 60.289 50.000 0.00 0.00 0.00 3.49
149 150 3.596214 CGTAAAGGCCCGAATATGCTAT 58.404 45.455 0.00 0.00 0.00 2.97
150 151 4.382254 CCGTAAAGGCCCGAATATGCTATA 60.382 45.833 0.00 0.00 0.00 1.31
151 152 5.172934 CGTAAAGGCCCGAATATGCTATAA 58.827 41.667 0.00 0.00 0.00 0.98
152 153 5.063060 CGTAAAGGCCCGAATATGCTATAAC 59.937 44.000 0.00 0.00 0.00 1.89
153 154 3.247006 AGGCCCGAATATGCTATAACG 57.753 47.619 0.00 0.00 0.00 3.18
154 155 1.664151 GGCCCGAATATGCTATAACGC 59.336 52.381 0.00 0.00 0.00 4.84
155 156 1.664151 GCCCGAATATGCTATAACGCC 59.336 52.381 0.00 0.00 0.00 5.68
156 157 1.924524 CCCGAATATGCTATAACGCCG 59.075 52.381 0.00 0.00 0.00 6.46
157 158 1.924524 CCGAATATGCTATAACGCCGG 59.075 52.381 0.00 0.00 0.00 6.13
158 159 2.416296 CCGAATATGCTATAACGCCGGA 60.416 50.000 5.05 0.00 33.47 5.14
159 160 3.247442 CGAATATGCTATAACGCCGGAA 58.753 45.455 5.05 0.00 0.00 4.30
160 161 3.676172 CGAATATGCTATAACGCCGGAAA 59.324 43.478 5.05 0.00 0.00 3.13
161 162 4.328983 CGAATATGCTATAACGCCGGAAAT 59.671 41.667 5.05 0.00 0.00 2.17
162 163 5.517411 CGAATATGCTATAACGCCGGAAATA 59.483 40.000 5.05 0.00 0.00 1.40
163 164 6.200286 CGAATATGCTATAACGCCGGAAATAT 59.800 38.462 5.05 1.74 0.00 1.28
164 165 7.380333 CGAATATGCTATAACGCCGGAAATATA 59.620 37.037 5.05 2.96 0.00 0.86
165 166 8.951787 AATATGCTATAACGCCGGAAATATAA 57.048 30.769 5.05 0.00 0.00 0.98
166 167 6.903883 ATGCTATAACGCCGGAAATATAAG 57.096 37.500 5.05 0.00 0.00 1.73
167 168 5.172934 TGCTATAACGCCGGAAATATAAGG 58.827 41.667 5.05 0.00 0.00 2.69
168 169 4.569564 GCTATAACGCCGGAAATATAAGGG 59.430 45.833 5.05 0.00 0.00 3.95
169 170 4.628963 ATAACGCCGGAAATATAAGGGT 57.371 40.909 5.05 0.00 0.00 4.34
170 171 3.286329 AACGCCGGAAATATAAGGGTT 57.714 42.857 5.05 0.00 0.00 4.11
171 172 2.567985 ACGCCGGAAATATAAGGGTTG 58.432 47.619 5.05 0.00 0.00 3.77
172 173 1.877443 CGCCGGAAATATAAGGGTTGG 59.123 52.381 5.05 0.00 0.00 3.77
173 174 2.747135 CGCCGGAAATATAAGGGTTGGT 60.747 50.000 5.05 0.00 0.00 3.67
174 175 2.621526 GCCGGAAATATAAGGGTTGGTG 59.378 50.000 5.05 0.00 0.00 4.17
175 176 3.219281 CCGGAAATATAAGGGTTGGTGG 58.781 50.000 0.00 0.00 0.00 4.61
176 177 2.621526 CGGAAATATAAGGGTTGGTGGC 59.378 50.000 0.00 0.00 0.00 5.01
177 178 2.621526 GGAAATATAAGGGTTGGTGGCG 59.378 50.000 0.00 0.00 0.00 5.69
178 179 2.358322 AATATAAGGGTTGGTGGCGG 57.642 50.000 0.00 0.00 0.00 6.13
179 180 0.476771 ATATAAGGGTTGGTGGCGGG 59.523 55.000 0.00 0.00 0.00 6.13
180 181 0.620990 TATAAGGGTTGGTGGCGGGA 60.621 55.000 0.00 0.00 0.00 5.14
181 182 1.286305 ATAAGGGTTGGTGGCGGGAT 61.286 55.000 0.00 0.00 0.00 3.85
182 183 0.620990 TAAGGGTTGGTGGCGGGATA 60.621 55.000 0.00 0.00 0.00 2.59
183 184 1.921869 AAGGGTTGGTGGCGGGATAG 61.922 60.000 0.00 0.00 0.00 2.08
184 185 2.372074 GGGTTGGTGGCGGGATAGA 61.372 63.158 0.00 0.00 0.00 1.98
185 186 1.146263 GGTTGGTGGCGGGATAGAG 59.854 63.158 0.00 0.00 0.00 2.43
186 187 1.335132 GGTTGGTGGCGGGATAGAGA 61.335 60.000 0.00 0.00 0.00 3.10
187 188 0.759346 GTTGGTGGCGGGATAGAGAT 59.241 55.000 0.00 0.00 0.00 2.75
188 189 0.758734 TTGGTGGCGGGATAGAGATG 59.241 55.000 0.00 0.00 0.00 2.90
189 190 1.004440 GGTGGCGGGATAGAGATGC 60.004 63.158 0.00 0.00 0.00 3.91
190 191 1.476007 GGTGGCGGGATAGAGATGCT 61.476 60.000 0.00 0.00 0.00 3.79
191 192 0.037790 GTGGCGGGATAGAGATGCTC 60.038 60.000 0.00 0.00 0.00 4.26
192 193 0.178950 TGGCGGGATAGAGATGCTCT 60.179 55.000 2.22 2.22 43.83 4.09
193 194 1.075536 TGGCGGGATAGAGATGCTCTA 59.924 52.381 6.63 6.63 45.52 2.43
194 195 2.171840 GGCGGGATAGAGATGCTCTAA 58.828 52.381 8.11 0.00 44.76 2.10
195 196 2.165437 GGCGGGATAGAGATGCTCTAAG 59.835 54.545 8.11 2.92 44.76 2.18
196 197 2.165437 GCGGGATAGAGATGCTCTAAGG 59.835 54.545 8.11 0.85 44.76 2.69
197 198 3.426615 CGGGATAGAGATGCTCTAAGGT 58.573 50.000 8.11 0.00 44.76 3.50
198 199 3.192422 CGGGATAGAGATGCTCTAAGGTG 59.808 52.174 8.11 0.00 44.76 4.00
199 200 3.513515 GGGATAGAGATGCTCTAAGGTGG 59.486 52.174 8.11 0.00 44.76 4.61
200 201 4.156477 GGATAGAGATGCTCTAAGGTGGT 58.844 47.826 8.11 0.00 44.76 4.16
201 202 5.326069 GGATAGAGATGCTCTAAGGTGGTA 58.674 45.833 8.11 0.00 44.76 3.25
202 203 5.184287 GGATAGAGATGCTCTAAGGTGGTAC 59.816 48.000 8.11 0.00 44.76 3.34
203 204 3.982516 AGAGATGCTCTAAGGTGGTACA 58.017 45.455 0.00 0.00 39.28 2.90
217 218 3.569194 TGGTACACTGTTGGTTCACAT 57.431 42.857 0.00 0.00 0.00 3.21
218 219 3.210227 TGGTACACTGTTGGTTCACATG 58.790 45.455 0.00 0.00 0.00 3.21
219 220 2.552315 GGTACACTGTTGGTTCACATGG 59.448 50.000 0.00 0.00 0.00 3.66
220 221 1.032014 ACACTGTTGGTTCACATGGC 58.968 50.000 0.00 0.00 0.00 4.40
221 222 0.314935 CACTGTTGGTTCACATGGCC 59.685 55.000 0.00 0.00 0.00 5.36
222 223 0.185901 ACTGTTGGTTCACATGGCCT 59.814 50.000 3.32 0.00 0.00 5.19
223 224 1.423541 ACTGTTGGTTCACATGGCCTA 59.576 47.619 3.32 0.00 0.00 3.93
224 225 2.158534 ACTGTTGGTTCACATGGCCTAA 60.159 45.455 3.32 0.00 0.00 2.69
225 226 3.091545 CTGTTGGTTCACATGGCCTAAT 58.908 45.455 3.32 0.00 0.00 1.73
226 227 4.263727 ACTGTTGGTTCACATGGCCTAATA 60.264 41.667 3.32 0.00 0.00 0.98
227 228 4.865905 TGTTGGTTCACATGGCCTAATAT 58.134 39.130 3.32 0.00 0.00 1.28
228 229 4.887071 TGTTGGTTCACATGGCCTAATATC 59.113 41.667 3.32 0.00 0.00 1.63
229 230 5.133221 GTTGGTTCACATGGCCTAATATCT 58.867 41.667 3.32 0.00 0.00 1.98
230 231 5.387113 TGGTTCACATGGCCTAATATCTT 57.613 39.130 3.32 0.00 0.00 2.40
231 232 5.376625 TGGTTCACATGGCCTAATATCTTC 58.623 41.667 3.32 0.00 0.00 2.87
232 233 4.762251 GGTTCACATGGCCTAATATCTTCC 59.238 45.833 3.32 0.00 0.00 3.46
233 234 5.456763 GGTTCACATGGCCTAATATCTTCCT 60.457 44.000 3.32 0.00 0.00 3.36
234 235 6.239887 GGTTCACATGGCCTAATATCTTCCTA 60.240 42.308 3.32 0.00 0.00 2.94
235 236 6.611613 TCACATGGCCTAATATCTTCCTAG 57.388 41.667 3.32 0.00 0.00 3.02
236 237 6.322931 TCACATGGCCTAATATCTTCCTAGA 58.677 40.000 3.32 0.00 34.21 2.43
237 238 6.787458 TCACATGGCCTAATATCTTCCTAGAA 59.213 38.462 3.32 0.00 33.20 2.10
238 239 7.292356 TCACATGGCCTAATATCTTCCTAGAAA 59.708 37.037 3.32 0.00 33.20 2.52
239 240 8.105829 CACATGGCCTAATATCTTCCTAGAAAT 58.894 37.037 3.32 0.00 33.20 2.17
240 241 8.105829 ACATGGCCTAATATCTTCCTAGAAATG 58.894 37.037 3.32 0.00 33.20 2.32
241 242 6.476378 TGGCCTAATATCTTCCTAGAAATGC 58.524 40.000 3.32 0.00 33.20 3.56
242 243 6.044287 TGGCCTAATATCTTCCTAGAAATGCA 59.956 38.462 3.32 0.00 33.20 3.96
243 244 6.942576 GGCCTAATATCTTCCTAGAAATGCAA 59.057 38.462 0.00 0.00 33.20 4.08
244 245 7.094592 GGCCTAATATCTTCCTAGAAATGCAAC 60.095 40.741 0.00 0.00 33.20 4.17
245 246 7.360438 GCCTAATATCTTCCTAGAAATGCAACG 60.360 40.741 0.00 0.00 33.20 4.10
246 247 7.872993 CCTAATATCTTCCTAGAAATGCAACGA 59.127 37.037 0.00 0.00 33.20 3.85
247 248 9.261180 CTAATATCTTCCTAGAAATGCAACGAA 57.739 33.333 0.00 0.00 33.20 3.85
248 249 8.506168 AATATCTTCCTAGAAATGCAACGAAA 57.494 30.769 0.00 0.00 33.20 3.46
249 250 6.817765 ATCTTCCTAGAAATGCAACGAAAA 57.182 33.333 0.00 0.00 33.20 2.29
250 251 6.817765 TCTTCCTAGAAATGCAACGAAAAT 57.182 33.333 0.00 0.00 0.00 1.82
251 252 6.611381 TCTTCCTAGAAATGCAACGAAAATG 58.389 36.000 0.00 0.00 0.00 2.32
252 253 5.957842 TCCTAGAAATGCAACGAAAATGT 57.042 34.783 0.00 0.00 0.00 2.71
253 254 7.389330 TCTTCCTAGAAATGCAACGAAAATGTA 59.611 33.333 0.00 0.00 0.00 2.29
254 255 7.072177 TCCTAGAAATGCAACGAAAATGTAG 57.928 36.000 0.00 0.00 0.00 2.74
255 256 6.653320 TCCTAGAAATGCAACGAAAATGTAGT 59.347 34.615 0.00 0.00 0.00 2.73
256 257 6.742718 CCTAGAAATGCAACGAAAATGTAGTG 59.257 38.462 0.00 0.00 0.00 2.74
257 258 6.072112 AGAAATGCAACGAAAATGTAGTGT 57.928 33.333 0.00 0.00 0.00 3.55
258 259 7.197071 AGAAATGCAACGAAAATGTAGTGTA 57.803 32.000 0.00 0.00 0.00 2.90
259 260 7.644490 AGAAATGCAACGAAAATGTAGTGTAA 58.356 30.769 0.00 0.00 0.00 2.41
260 261 8.132362 AGAAATGCAACGAAAATGTAGTGTAAA 58.868 29.630 0.00 0.00 0.00 2.01
261 262 7.617533 AATGCAACGAAAATGTAGTGTAAAC 57.382 32.000 0.00 0.00 0.00 2.01
262 263 6.120378 TGCAACGAAAATGTAGTGTAAACA 57.880 33.333 0.00 0.00 0.00 2.83
263 264 6.195868 TGCAACGAAAATGTAGTGTAAACAG 58.804 36.000 0.00 0.00 0.00 3.16
264 265 5.623673 GCAACGAAAATGTAGTGTAAACAGG 59.376 40.000 0.00 0.00 0.00 4.00
265 266 6.721321 CAACGAAAATGTAGTGTAAACAGGT 58.279 36.000 0.00 0.00 0.00 4.00
266 267 6.930667 ACGAAAATGTAGTGTAAACAGGTT 57.069 33.333 0.00 0.00 0.00 3.50
267 268 7.324354 ACGAAAATGTAGTGTAAACAGGTTT 57.676 32.000 2.66 2.66 36.63 3.27
268 269 7.764331 ACGAAAATGTAGTGTAAACAGGTTTT 58.236 30.769 2.37 0.00 34.23 2.43
269 270 7.698970 ACGAAAATGTAGTGTAAACAGGTTTTG 59.301 33.333 2.37 0.00 34.23 2.44
270 271 7.698970 CGAAAATGTAGTGTAAACAGGTTTTGT 59.301 33.333 2.37 0.00 43.45 2.83
271 272 8.920509 AAAATGTAGTGTAAACAGGTTTTGTC 57.079 30.769 2.37 0.00 39.73 3.18
272 273 7.875327 AATGTAGTGTAAACAGGTTTTGTCT 57.125 32.000 2.37 2.65 39.73 3.41
273 274 8.967664 AATGTAGTGTAAACAGGTTTTGTCTA 57.032 30.769 2.37 1.83 39.73 2.59
274 275 8.603242 ATGTAGTGTAAACAGGTTTTGTCTAG 57.397 34.615 2.37 0.00 39.73 2.43
275 276 6.987992 TGTAGTGTAAACAGGTTTTGTCTAGG 59.012 38.462 2.37 0.00 39.73 3.02
276 277 5.374071 AGTGTAAACAGGTTTTGTCTAGGG 58.626 41.667 2.37 0.00 39.73 3.53
277 278 4.023450 GTGTAAACAGGTTTTGTCTAGGGC 60.023 45.833 2.37 0.00 39.73 5.19
278 279 1.892209 AACAGGTTTTGTCTAGGGCG 58.108 50.000 0.00 0.00 39.73 6.13
279 280 0.605589 ACAGGTTTTGTCTAGGGCGC 60.606 55.000 0.00 0.00 33.87 6.53
280 281 0.605319 CAGGTTTTGTCTAGGGCGCA 60.605 55.000 10.83 0.00 0.00 6.09
281 282 0.328258 AGGTTTTGTCTAGGGCGCAT 59.672 50.000 10.83 0.00 0.00 4.73
282 283 0.733150 GGTTTTGTCTAGGGCGCATC 59.267 55.000 10.83 0.00 0.00 3.91
283 284 1.679032 GGTTTTGTCTAGGGCGCATCT 60.679 52.381 10.83 8.90 0.00 2.90
284 285 2.419574 GGTTTTGTCTAGGGCGCATCTA 60.420 50.000 10.83 9.66 0.00 1.98
285 286 2.866762 GTTTTGTCTAGGGCGCATCTAG 59.133 50.000 22.99 22.99 36.46 2.43
286 287 2.067365 TTGTCTAGGGCGCATCTAGA 57.933 50.000 25.78 25.78 40.38 2.43
287 288 2.294449 TGTCTAGGGCGCATCTAGAT 57.706 50.000 29.45 0.00 43.25 1.98
288 289 3.434940 TGTCTAGGGCGCATCTAGATA 57.565 47.619 29.45 26.05 43.25 1.98
289 290 3.969553 TGTCTAGGGCGCATCTAGATAT 58.030 45.455 29.45 3.57 43.25 1.63
290 291 5.112129 TGTCTAGGGCGCATCTAGATATA 57.888 43.478 29.45 20.53 43.25 0.86
291 292 5.696030 TGTCTAGGGCGCATCTAGATATAT 58.304 41.667 29.45 0.00 43.25 0.86
292 293 5.532779 TGTCTAGGGCGCATCTAGATATATG 59.467 44.000 29.45 11.26 43.25 1.78
293 294 3.742433 AGGGCGCATCTAGATATATGC 57.258 47.619 10.83 5.42 44.02 3.14
294 295 2.366916 AGGGCGCATCTAGATATATGCC 59.633 50.000 20.30 20.30 44.50 4.40
295 296 2.366916 GGGCGCATCTAGATATATGCCT 59.633 50.000 24.28 0.00 44.50 4.75
296 297 3.181461 GGGCGCATCTAGATATATGCCTT 60.181 47.826 24.28 0.00 44.50 4.35
297 298 4.039245 GGGCGCATCTAGATATATGCCTTA 59.961 45.833 24.28 0.00 44.50 2.69
298 299 5.453339 GGGCGCATCTAGATATATGCCTTAA 60.453 44.000 24.28 0.00 44.50 1.85
299 300 6.226787 GGCGCATCTAGATATATGCCTTAAT 58.773 40.000 20.81 0.00 44.50 1.40
300 301 6.708054 GGCGCATCTAGATATATGCCTTAATT 59.292 38.462 20.81 0.00 44.50 1.40
301 302 7.872993 GGCGCATCTAGATATATGCCTTAATTA 59.127 37.037 20.81 0.00 44.50 1.40
302 303 9.429359 GCGCATCTAGATATATGCCTTAATTAT 57.571 33.333 4.54 0.00 44.50 1.28
317 318 9.791801 TGCCTTAATTATTGCATATCTAAGTGA 57.208 29.630 5.56 0.00 0.00 3.41
324 325 5.801350 TTGCATATCTAAGTGACACAAGC 57.199 39.130 8.59 0.00 0.00 4.01
325 326 4.831107 TGCATATCTAAGTGACACAAGCA 58.169 39.130 8.59 0.00 0.00 3.91
326 327 5.244755 TGCATATCTAAGTGACACAAGCAA 58.755 37.500 8.59 0.00 0.00 3.91
327 328 5.352293 TGCATATCTAAGTGACACAAGCAAG 59.648 40.000 8.59 0.00 0.00 4.01
328 329 5.728898 GCATATCTAAGTGACACAAGCAAGC 60.729 44.000 8.59 4.19 0.00 4.01
329 330 3.192541 TCTAAGTGACACAAGCAAGCA 57.807 42.857 8.59 0.00 0.00 3.91
330 331 3.743521 TCTAAGTGACACAAGCAAGCAT 58.256 40.909 8.59 0.00 0.00 3.79
331 332 4.893608 TCTAAGTGACACAAGCAAGCATA 58.106 39.130 8.59 0.00 0.00 3.14
332 333 4.931601 TCTAAGTGACACAAGCAAGCATAG 59.068 41.667 8.59 0.00 0.00 2.23
333 334 3.407424 AGTGACACAAGCAAGCATAGA 57.593 42.857 8.59 0.00 0.00 1.98
334 335 3.743521 AGTGACACAAGCAAGCATAGAA 58.256 40.909 8.59 0.00 0.00 2.10
335 336 4.136796 AGTGACACAAGCAAGCATAGAAA 58.863 39.130 8.59 0.00 0.00 2.52
336 337 4.214971 AGTGACACAAGCAAGCATAGAAAG 59.785 41.667 8.59 0.00 0.00 2.62
337 338 3.503363 TGACACAAGCAAGCATAGAAAGG 59.497 43.478 0.00 0.00 0.00 3.11
338 339 3.753272 GACACAAGCAAGCATAGAAAGGA 59.247 43.478 0.00 0.00 0.00 3.36
339 340 4.144297 ACACAAGCAAGCATAGAAAGGAA 58.856 39.130 0.00 0.00 0.00 3.36
340 341 4.584325 ACACAAGCAAGCATAGAAAGGAAA 59.416 37.500 0.00 0.00 0.00 3.13
341 342 5.068987 ACACAAGCAAGCATAGAAAGGAAAA 59.931 36.000 0.00 0.00 0.00 2.29
342 343 5.984926 CACAAGCAAGCATAGAAAGGAAAAA 59.015 36.000 0.00 0.00 0.00 1.94
378 379 5.693814 GGAAATATCCACATGAATCTTCGC 58.306 41.667 0.00 0.00 45.79 4.70
379 380 4.997905 AATATCCACATGAATCTTCGCG 57.002 40.909 0.00 0.00 0.00 5.87
380 381 2.315925 ATCCACATGAATCTTCGCGT 57.684 45.000 5.77 0.00 0.00 6.01
381 382 2.951457 TCCACATGAATCTTCGCGTA 57.049 45.000 5.77 0.00 0.00 4.42
382 383 3.239587 TCCACATGAATCTTCGCGTAA 57.760 42.857 5.77 0.00 0.00 3.18
383 384 3.186909 TCCACATGAATCTTCGCGTAAG 58.813 45.455 5.77 8.97 36.45 2.34
395 396 5.827666 TCTTCGCGTAAGATCAATGATACA 58.172 37.500 5.77 0.00 39.36 2.29
396 397 5.915196 TCTTCGCGTAAGATCAATGATACAG 59.085 40.000 5.77 0.00 39.36 2.74
397 398 4.546570 TCGCGTAAGATCAATGATACAGG 58.453 43.478 5.77 0.00 43.02 4.00
398 399 4.277423 TCGCGTAAGATCAATGATACAGGA 59.723 41.667 5.77 0.00 43.02 3.86
399 400 4.383052 CGCGTAAGATCAATGATACAGGAC 59.617 45.833 0.00 0.00 43.02 3.85
400 401 5.533482 GCGTAAGATCAATGATACAGGACT 58.467 41.667 0.00 0.00 43.02 3.85
401 402 5.986135 GCGTAAGATCAATGATACAGGACTT 59.014 40.000 0.00 0.00 43.02 3.01
402 403 6.074088 GCGTAAGATCAATGATACAGGACTTG 60.074 42.308 0.00 0.00 43.02 3.16
403 404 6.422100 CGTAAGATCAATGATACAGGACTTGG 59.578 42.308 0.00 0.00 43.02 3.61
404 405 6.566079 AAGATCAATGATACAGGACTTGGA 57.434 37.500 0.00 0.00 0.00 3.53
405 406 6.760440 AGATCAATGATACAGGACTTGGAT 57.240 37.500 0.00 0.00 31.04 3.41
406 407 6.531923 AGATCAATGATACAGGACTTGGATG 58.468 40.000 0.00 0.00 27.37 3.51
407 408 5.698741 TCAATGATACAGGACTTGGATGT 57.301 39.130 0.00 0.00 27.37 3.06
408 409 5.430886 TCAATGATACAGGACTTGGATGTG 58.569 41.667 0.00 0.00 27.37 3.21
409 410 3.266510 TGATACAGGACTTGGATGTGC 57.733 47.619 0.00 0.00 27.37 4.57
410 411 2.571202 TGATACAGGACTTGGATGTGCA 59.429 45.455 0.00 0.00 27.37 4.57
411 412 3.008923 TGATACAGGACTTGGATGTGCAA 59.991 43.478 0.00 0.00 27.37 4.08
412 413 2.592102 ACAGGACTTGGATGTGCAAT 57.408 45.000 0.00 0.00 0.00 3.56
413 414 2.165167 ACAGGACTTGGATGTGCAATG 58.835 47.619 0.00 0.00 0.00 2.82
414 415 1.475280 CAGGACTTGGATGTGCAATGG 59.525 52.381 0.00 0.00 0.00 3.16
415 416 0.174162 GGACTTGGATGTGCAATGGC 59.826 55.000 0.00 0.00 41.68 4.40
432 433 3.354948 TGGCACATCTAGATGCACTTT 57.645 42.857 28.86 9.55 43.93 2.66
433 434 4.486125 TGGCACATCTAGATGCACTTTA 57.514 40.909 28.86 10.84 43.93 1.85
434 435 4.445453 TGGCACATCTAGATGCACTTTAG 58.555 43.478 28.86 13.07 43.93 1.85
435 436 3.249559 GGCACATCTAGATGCACTTTAGC 59.750 47.826 28.86 19.99 43.93 3.09
447 448 5.065704 TGCACTTTAGCAAAACTGAAACA 57.934 34.783 0.00 0.00 42.46 2.83
448 449 5.473931 TGCACTTTAGCAAAACTGAAACAA 58.526 33.333 0.00 0.00 42.46 2.83
525 526 1.738099 CCGACGACAAGAAGGCTGG 60.738 63.158 0.00 0.00 0.00 4.85
788 830 2.715749 TCCACCATGTCCATGTGATC 57.284 50.000 6.53 0.00 37.11 2.92
1272 1392 2.260434 GTCTTCCGCACCTACGCA 59.740 61.111 0.00 0.00 0.00 5.24
1493 1613 2.179517 GCTCGACGACCACCTCAG 59.820 66.667 0.00 0.00 0.00 3.35
2145 2265 1.074471 GGAGGCTGAGGGGATGGTA 60.074 63.158 0.00 0.00 0.00 3.25
2529 2649 1.882623 GCTCAGCTAAACAAGGCAGTT 59.117 47.619 0.00 0.00 0.00 3.16
2580 2700 2.276732 CCAAGAAGGCACTCAAGGAA 57.723 50.000 0.00 0.00 38.49 3.36
2749 2869 2.105993 AGGGTTGGAAGTAAGACCACAC 59.894 50.000 0.00 0.00 35.81 3.82
3285 3405 4.084287 TGGTATCGTACACAGAGTTCCTT 58.916 43.478 0.00 0.00 0.00 3.36
3312 3432 3.011595 TGTTCAATGATCCTGATTGGGGT 59.988 43.478 4.85 0.00 36.20 4.95
3522 3642 6.942576 AGTACAGGTTCAAAGAATACAGCAAT 59.057 34.615 0.00 0.00 0.00 3.56
3538 3658 1.649664 CAATGAGTCGGAGGCTCTTG 58.350 55.000 15.23 7.70 40.46 3.02
3609 3729 1.739466 GCTTGATTGTTGGAGCATCGA 59.261 47.619 0.00 0.00 34.37 3.59
3899 4019 1.066257 CAGTTTTGGTTGCGCTGCT 59.934 52.632 9.73 0.00 0.00 4.24
3923 4050 7.606839 GCTTACTACTCCCTCAACACTAAAAAT 59.393 37.037 0.00 0.00 0.00 1.82
4130 4263 1.340405 ACAGTGGTTGCTCCCATCATC 60.340 52.381 0.00 0.00 36.74 2.92
4148 4281 3.624410 TCATCTGTCCAAATCATTCGCAG 59.376 43.478 0.00 0.00 0.00 5.18
4152 4285 2.083774 GTCCAAATCATTCGCAGGACA 58.916 47.619 0.00 0.00 43.74 4.02
4221 4357 1.216122 GCAGATTTCTGGCGCTCTAG 58.784 55.000 7.64 3.77 43.94 2.43
4230 4366 1.254975 TGGCGCTCTAGCTGTGGTTA 61.255 55.000 7.64 0.00 39.32 2.85
4241 4377 7.624344 GCTCTAGCTGTGGTTAACATGTTTTAG 60.624 40.741 17.78 7.56 38.39 1.85
4269 4405 4.209538 TGGTTGGATTATCTTGCTCATGG 58.790 43.478 0.00 0.00 0.00 3.66
4372 4508 1.265905 GCTTCCGTTCAAATGTTCGGT 59.734 47.619 14.45 0.00 42.95 4.69
4383 4609 5.337554 TCAAATGTTCGGTATACTCTCACG 58.662 41.667 2.25 0.00 0.00 4.35
4398 4648 2.806818 TCTCACGTGTATCTATCTCCGC 59.193 50.000 16.51 0.00 0.00 5.54
4420 4670 5.205565 GCCGTGTTTCTTTACTTCTTTCAG 58.794 41.667 0.00 0.00 0.00 3.02
4453 4703 5.084722 CAGCTATTTTCAGTTCTTGCTTCG 58.915 41.667 0.00 0.00 0.00 3.79
4456 4706 3.691049 TTTTCAGTTCTTGCTTCGGTG 57.309 42.857 0.00 0.00 0.00 4.94
4466 4716 1.295423 GCTTCGGTGTCCCAAGCTA 59.705 57.895 10.06 0.00 39.63 3.32
4519 4769 2.554806 TTCGTGGTACTATGCGACTG 57.445 50.000 0.00 0.00 32.89 3.51
4522 4772 1.131693 CGTGGTACTATGCGACTGTCA 59.868 52.381 8.73 0.00 0.00 3.58
4600 4850 2.880890 AGTGGCTGTTGCTCAACTAAAG 59.119 45.455 13.16 4.68 41.67 1.85
4627 4878 6.913170 TCTTGCTCTTTATGCTTTGTTTAGG 58.087 36.000 0.00 0.00 0.00 2.69
4722 4973 1.264288 CGCTCTTTTTCTTTGTCGGCT 59.736 47.619 0.00 0.00 0.00 5.52
4762 5015 0.251297 TTCCCTGTGACCATTGGCAG 60.251 55.000 1.54 2.24 0.00 4.85
4766 5019 0.322277 CTGTGACCATTGGCAGAGCT 60.322 55.000 1.54 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.311165 ACCGTCTCGCAATAGATCCG 59.689 55.000 0.00 0.00 0.00 4.18
1 2 2.812591 TCTACCGTCTCGCAATAGATCC 59.187 50.000 0.00 0.00 0.00 3.36
2 3 3.499157 AGTCTACCGTCTCGCAATAGATC 59.501 47.826 0.00 0.00 0.00 2.75
3 4 3.478509 AGTCTACCGTCTCGCAATAGAT 58.521 45.455 0.00 0.00 0.00 1.98
4 5 2.915349 AGTCTACCGTCTCGCAATAGA 58.085 47.619 0.00 0.00 0.00 1.98
5 6 3.694535 AAGTCTACCGTCTCGCAATAG 57.305 47.619 0.00 0.00 0.00 1.73
6 7 5.335127 GTTTAAGTCTACCGTCTCGCAATA 58.665 41.667 0.00 0.00 0.00 1.90
7 8 4.171754 GTTTAAGTCTACCGTCTCGCAAT 58.828 43.478 0.00 0.00 0.00 3.56
8 9 3.568538 GTTTAAGTCTACCGTCTCGCAA 58.431 45.455 0.00 0.00 0.00 4.85
9 10 2.095059 GGTTTAAGTCTACCGTCTCGCA 60.095 50.000 0.00 0.00 0.00 5.10
10 11 2.163211 AGGTTTAAGTCTACCGTCTCGC 59.837 50.000 0.00 0.00 39.46 5.03
11 12 3.688673 AGAGGTTTAAGTCTACCGTCTCG 59.311 47.826 0.00 0.00 39.46 4.04
12 13 4.096231 GGAGAGGTTTAAGTCTACCGTCTC 59.904 50.000 11.35 11.35 39.46 3.36
13 14 4.015764 GGAGAGGTTTAAGTCTACCGTCT 58.984 47.826 0.00 0.00 39.46 4.18
14 15 3.130164 GGGAGAGGTTTAAGTCTACCGTC 59.870 52.174 0.00 0.00 33.96 4.79
15 16 3.095332 GGGAGAGGTTTAAGTCTACCGT 58.905 50.000 0.00 0.00 33.96 4.83
16 17 3.797451 GGGAGAGGTTTAAGTCTACCG 57.203 52.381 0.00 0.00 33.96 4.02
17 18 3.705579 GGAGGGAGAGGTTTAAGTCTACC 59.294 52.174 5.14 5.14 43.52 3.18
18 19 3.705579 GGGAGGGAGAGGTTTAAGTCTAC 59.294 52.174 0.00 0.00 0.00 2.59
19 20 3.310435 GGGGAGGGAGAGGTTTAAGTCTA 60.310 52.174 0.00 0.00 0.00 2.59
20 21 2.562443 GGGGAGGGAGAGGTTTAAGTCT 60.562 54.545 0.00 0.00 0.00 3.24
21 22 1.838715 GGGGAGGGAGAGGTTTAAGTC 59.161 57.143 0.00 0.00 0.00 3.01
22 23 1.900337 CGGGGAGGGAGAGGTTTAAGT 60.900 57.143 0.00 0.00 0.00 2.24
23 24 0.831307 CGGGGAGGGAGAGGTTTAAG 59.169 60.000 0.00 0.00 0.00 1.85
24 25 0.117742 ACGGGGAGGGAGAGGTTTAA 59.882 55.000 0.00 0.00 0.00 1.52
25 26 1.009997 TACGGGGAGGGAGAGGTTTA 58.990 55.000 0.00 0.00 0.00 2.01
26 27 0.616964 GTACGGGGAGGGAGAGGTTT 60.617 60.000 0.00 0.00 0.00 3.27
27 28 1.001376 GTACGGGGAGGGAGAGGTT 59.999 63.158 0.00 0.00 0.00 3.50
28 29 1.591280 ATGTACGGGGAGGGAGAGGT 61.591 60.000 0.00 0.00 0.00 3.85
29 30 0.481567 TATGTACGGGGAGGGAGAGG 59.518 60.000 0.00 0.00 0.00 3.69
30 31 2.606751 ATATGTACGGGGAGGGAGAG 57.393 55.000 0.00 0.00 0.00 3.20
31 32 2.291411 GCTATATGTACGGGGAGGGAGA 60.291 54.545 0.00 0.00 0.00 3.71
32 33 2.100989 GCTATATGTACGGGGAGGGAG 58.899 57.143 0.00 0.00 0.00 4.30
33 34 1.615116 CGCTATATGTACGGGGAGGGA 60.615 57.143 0.00 0.00 0.00 4.20
34 35 0.815734 CGCTATATGTACGGGGAGGG 59.184 60.000 0.00 0.00 0.00 4.30
35 36 0.815734 CCGCTATATGTACGGGGAGG 59.184 60.000 5.29 0.00 43.23 4.30
36 37 0.172803 GCCGCTATATGTACGGGGAG 59.827 60.000 12.86 0.00 46.97 4.30
37 38 0.251474 AGCCGCTATATGTACGGGGA 60.251 55.000 12.86 0.00 46.97 4.81
38 39 0.108804 CAGCCGCTATATGTACGGGG 60.109 60.000 12.86 5.37 46.97 5.73
39 40 0.108804 CCAGCCGCTATATGTACGGG 60.109 60.000 12.86 0.60 46.97 5.28
41 42 1.135373 CCTCCAGCCGCTATATGTACG 60.135 57.143 0.00 0.00 0.00 3.67
42 43 1.204941 CCCTCCAGCCGCTATATGTAC 59.795 57.143 0.00 0.00 0.00 2.90
43 44 1.557099 CCCTCCAGCCGCTATATGTA 58.443 55.000 0.00 0.00 0.00 2.29
44 45 1.194781 CCCCTCCAGCCGCTATATGT 61.195 60.000 0.00 0.00 0.00 2.29
45 46 1.599047 CCCCTCCAGCCGCTATATG 59.401 63.158 0.00 0.00 0.00 1.78
46 47 2.294078 GCCCCTCCAGCCGCTATAT 61.294 63.158 0.00 0.00 0.00 0.86
47 48 2.923035 GCCCCTCCAGCCGCTATA 60.923 66.667 0.00 0.00 0.00 1.31
55 56 4.659172 TGCAAACCGCCCCTCCAG 62.659 66.667 0.00 0.00 41.33 3.86
56 57 4.659172 CTGCAAACCGCCCCTCCA 62.659 66.667 0.00 0.00 41.33 3.86
70 71 1.170290 AATTTATACGGGCGGCCTGC 61.170 55.000 27.45 6.47 45.38 4.85
71 72 1.314730 AAATTTATACGGGCGGCCTG 58.685 50.000 26.03 26.03 35.68 4.85
72 73 2.061509 AAAATTTATACGGGCGGCCT 57.938 45.000 27.04 15.31 0.00 5.19
73 74 2.349722 CGTAAAATTTATACGGGCGGCC 60.350 50.000 20.04 20.04 41.73 6.13
74 75 2.907393 CGTAAAATTTATACGGGCGGC 58.093 47.619 17.64 0.00 41.73 6.53
80 81 2.545106 AGCGGCCCGTAAAATTTATACG 59.455 45.455 4.45 18.11 44.26 3.06
81 82 3.850740 GCAGCGGCCCGTAAAATTTATAC 60.851 47.826 4.45 0.00 0.00 1.47
82 83 2.291190 GCAGCGGCCCGTAAAATTTATA 59.709 45.455 4.45 0.00 0.00 0.98
83 84 1.066454 GCAGCGGCCCGTAAAATTTAT 59.934 47.619 4.45 0.00 0.00 1.40
84 85 0.452585 GCAGCGGCCCGTAAAATTTA 59.547 50.000 4.45 0.00 0.00 1.40
85 86 1.214325 GCAGCGGCCCGTAAAATTT 59.786 52.632 4.45 0.00 0.00 1.82
86 87 1.528292 TTGCAGCGGCCCGTAAAATT 61.528 50.000 4.45 0.00 40.13 1.82
87 88 1.528292 TTTGCAGCGGCCCGTAAAAT 61.528 50.000 4.45 0.00 40.13 1.82
88 89 1.528292 ATTTGCAGCGGCCCGTAAAA 61.528 50.000 4.45 0.00 40.13 1.52
89 90 1.528292 AATTTGCAGCGGCCCGTAAA 61.528 50.000 4.45 0.03 40.13 2.01
90 91 1.528292 AAATTTGCAGCGGCCCGTAA 61.528 50.000 4.45 0.00 40.13 3.18
91 92 1.974343 AAATTTGCAGCGGCCCGTA 60.974 52.632 4.45 0.00 40.13 4.02
92 93 3.302344 AAATTTGCAGCGGCCCGT 61.302 55.556 4.45 0.00 40.13 5.28
93 94 2.810458 CAAATTTGCAGCGGCCCG 60.810 61.111 6.32 0.00 40.13 6.13
94 95 1.737735 GACAAATTTGCAGCGGCCC 60.738 57.895 18.12 0.00 40.13 5.80
95 96 1.006337 TGACAAATTTGCAGCGGCC 60.006 52.632 18.12 0.00 40.13 6.13
96 97 0.039256 TCTGACAAATTTGCAGCGGC 60.039 50.000 25.25 0.31 41.68 6.53
97 98 1.666888 GGTCTGACAAATTTGCAGCGG 60.667 52.381 25.25 17.49 34.53 5.52
98 99 1.267806 AGGTCTGACAAATTTGCAGCG 59.732 47.619 25.25 12.95 34.53 5.18
99 100 2.035066 ACAGGTCTGACAAATTTGCAGC 59.965 45.455 25.25 21.18 34.53 5.25
100 101 3.996150 ACAGGTCTGACAAATTTGCAG 57.004 42.857 24.62 24.62 35.27 4.41
101 102 3.953612 AGAACAGGTCTGACAAATTTGCA 59.046 39.130 18.12 14.87 34.29 4.08
102 103 4.574599 AGAACAGGTCTGACAAATTTGC 57.425 40.909 18.12 11.21 34.29 3.68
103 104 5.335191 GGCTAGAACAGGTCTGACAAATTTG 60.335 44.000 16.67 16.67 37.12 2.32
104 105 4.762251 GGCTAGAACAGGTCTGACAAATTT 59.238 41.667 10.38 0.00 37.12 1.82
105 106 4.327680 GGCTAGAACAGGTCTGACAAATT 58.672 43.478 10.38 0.00 37.12 1.82
106 107 3.307762 GGGCTAGAACAGGTCTGACAAAT 60.308 47.826 10.38 0.00 37.12 2.32
107 108 2.038557 GGGCTAGAACAGGTCTGACAAA 59.961 50.000 10.38 0.00 37.12 2.83
108 109 1.623811 GGGCTAGAACAGGTCTGACAA 59.376 52.381 10.38 0.00 37.12 3.18
109 110 1.267121 GGGCTAGAACAGGTCTGACA 58.733 55.000 10.38 0.00 37.12 3.58
110 111 0.173708 CGGGCTAGAACAGGTCTGAC 59.826 60.000 0.00 0.00 37.12 3.51
111 112 0.251653 ACGGGCTAGAACAGGTCTGA 60.252 55.000 0.00 0.00 37.12 3.27
112 113 1.471119 TACGGGCTAGAACAGGTCTG 58.529 55.000 0.00 0.00 37.12 3.51
113 114 2.226962 TTACGGGCTAGAACAGGTCT 57.773 50.000 0.00 0.00 40.71 3.85
114 115 2.418334 CCTTTACGGGCTAGAACAGGTC 60.418 54.545 0.00 0.00 0.00 3.85
115 116 1.553704 CCTTTACGGGCTAGAACAGGT 59.446 52.381 0.00 0.00 0.00 4.00
116 117 2.311124 CCTTTACGGGCTAGAACAGG 57.689 55.000 0.00 0.00 0.00 4.00
126 127 1.519408 CATATTCGGGCCTTTACGGG 58.481 55.000 0.84 0.00 0.00 5.28
127 128 0.872388 GCATATTCGGGCCTTTACGG 59.128 55.000 0.84 0.00 0.00 4.02
128 129 1.878953 AGCATATTCGGGCCTTTACG 58.121 50.000 0.84 0.00 0.00 3.18
129 130 5.063060 CGTTATAGCATATTCGGGCCTTTAC 59.937 44.000 0.84 0.00 0.00 2.01
130 131 5.172934 CGTTATAGCATATTCGGGCCTTTA 58.827 41.667 0.84 0.00 0.00 1.85
131 132 4.000988 CGTTATAGCATATTCGGGCCTTT 58.999 43.478 0.84 0.00 0.00 3.11
132 133 3.596214 CGTTATAGCATATTCGGGCCTT 58.404 45.455 0.84 0.00 0.00 4.35
133 134 2.677037 GCGTTATAGCATATTCGGGCCT 60.677 50.000 0.84 0.00 37.05 5.19
134 135 1.664151 GCGTTATAGCATATTCGGGCC 59.336 52.381 0.00 0.00 37.05 5.80
135 136 1.664151 GGCGTTATAGCATATTCGGGC 59.336 52.381 0.00 0.00 39.27 6.13
136 137 1.924524 CGGCGTTATAGCATATTCGGG 59.075 52.381 0.00 0.00 39.27 5.14
137 138 1.924524 CCGGCGTTATAGCATATTCGG 59.075 52.381 6.01 0.00 39.27 4.30
138 139 2.871133 TCCGGCGTTATAGCATATTCG 58.129 47.619 6.01 0.00 39.27 3.34
139 140 5.796350 ATTTCCGGCGTTATAGCATATTC 57.204 39.130 6.01 0.00 39.27 1.75
140 141 8.951787 TTATATTTCCGGCGTTATAGCATATT 57.048 30.769 6.01 0.00 39.27 1.28
141 142 7.656137 CCTTATATTTCCGGCGTTATAGCATAT 59.344 37.037 6.01 0.81 39.27 1.78
142 143 6.982141 CCTTATATTTCCGGCGTTATAGCATA 59.018 38.462 6.01 0.00 39.27 3.14
143 144 5.815740 CCTTATATTTCCGGCGTTATAGCAT 59.184 40.000 6.01 0.00 39.27 3.79
144 145 5.172934 CCTTATATTTCCGGCGTTATAGCA 58.827 41.667 6.01 0.00 39.27 3.49
145 146 4.569564 CCCTTATATTTCCGGCGTTATAGC 59.430 45.833 6.01 0.00 0.00 2.97
146 147 5.727434 ACCCTTATATTTCCGGCGTTATAG 58.273 41.667 6.01 0.00 0.00 1.31
147 148 5.743636 ACCCTTATATTTCCGGCGTTATA 57.256 39.130 6.01 0.59 0.00 0.98
148 149 4.628963 ACCCTTATATTTCCGGCGTTAT 57.371 40.909 6.01 0.00 0.00 1.89
149 150 4.128643 CAACCCTTATATTTCCGGCGTTA 58.871 43.478 6.01 0.00 0.00 3.18
150 151 2.946990 CAACCCTTATATTTCCGGCGTT 59.053 45.455 6.01 0.00 0.00 4.84
151 152 2.567985 CAACCCTTATATTTCCGGCGT 58.432 47.619 6.01 0.00 0.00 5.68
152 153 1.877443 CCAACCCTTATATTTCCGGCG 59.123 52.381 0.00 0.00 0.00 6.46
153 154 2.621526 CACCAACCCTTATATTTCCGGC 59.378 50.000 0.00 0.00 0.00 6.13
154 155 3.219281 CCACCAACCCTTATATTTCCGG 58.781 50.000 0.00 0.00 0.00 5.14
155 156 2.621526 GCCACCAACCCTTATATTTCCG 59.378 50.000 0.00 0.00 0.00 4.30
156 157 2.621526 CGCCACCAACCCTTATATTTCC 59.378 50.000 0.00 0.00 0.00 3.13
157 158 2.621526 CCGCCACCAACCCTTATATTTC 59.378 50.000 0.00 0.00 0.00 2.17
158 159 2.661718 CCGCCACCAACCCTTATATTT 58.338 47.619 0.00 0.00 0.00 1.40
159 160 1.133606 CCCGCCACCAACCCTTATATT 60.134 52.381 0.00 0.00 0.00 1.28
160 161 0.476771 CCCGCCACCAACCCTTATAT 59.523 55.000 0.00 0.00 0.00 0.86
161 162 0.620990 TCCCGCCACCAACCCTTATA 60.621 55.000 0.00 0.00 0.00 0.98
162 163 1.286305 ATCCCGCCACCAACCCTTAT 61.286 55.000 0.00 0.00 0.00 1.73
163 164 0.620990 TATCCCGCCACCAACCCTTA 60.621 55.000 0.00 0.00 0.00 2.69
164 165 1.921869 CTATCCCGCCACCAACCCTT 61.922 60.000 0.00 0.00 0.00 3.95
165 166 2.285818 TATCCCGCCACCAACCCT 60.286 61.111 0.00 0.00 0.00 4.34
166 167 2.192175 CTATCCCGCCACCAACCC 59.808 66.667 0.00 0.00 0.00 4.11
167 168 1.146263 CTCTATCCCGCCACCAACC 59.854 63.158 0.00 0.00 0.00 3.77
168 169 0.759346 ATCTCTATCCCGCCACCAAC 59.241 55.000 0.00 0.00 0.00 3.77
169 170 0.758734 CATCTCTATCCCGCCACCAA 59.241 55.000 0.00 0.00 0.00 3.67
170 171 1.758440 GCATCTCTATCCCGCCACCA 61.758 60.000 0.00 0.00 0.00 4.17
171 172 1.004440 GCATCTCTATCCCGCCACC 60.004 63.158 0.00 0.00 0.00 4.61
172 173 0.037790 GAGCATCTCTATCCCGCCAC 60.038 60.000 0.00 0.00 0.00 5.01
173 174 2.355946 GAGCATCTCTATCCCGCCA 58.644 57.895 0.00 0.00 0.00 5.69
179 180 8.392879 AGTGTACCACCTTAGAGCATCTCTATC 61.393 44.444 4.59 0.00 39.22 2.08
180 181 6.638423 AGTGTACCACCTTAGAGCATCTCTAT 60.638 42.308 4.59 0.00 39.22 1.98
181 182 5.340110 AGTGTACCACCTTAGAGCATCTCTA 60.340 44.000 0.00 0.00 39.22 2.43
182 183 4.570933 AGTGTACCACCTTAGAGCATCTCT 60.571 45.833 1.71 1.71 39.22 3.10
183 184 3.702045 AGTGTACCACCTTAGAGCATCTC 59.298 47.826 0.00 0.00 39.22 2.75
184 185 3.449018 CAGTGTACCACCTTAGAGCATCT 59.551 47.826 0.00 0.00 41.83 2.90
185 186 3.195825 ACAGTGTACCACCTTAGAGCATC 59.804 47.826 0.00 0.00 34.49 3.91
186 187 3.173965 ACAGTGTACCACCTTAGAGCAT 58.826 45.455 0.00 0.00 34.49 3.79
187 188 2.605257 ACAGTGTACCACCTTAGAGCA 58.395 47.619 0.00 0.00 34.49 4.26
188 189 3.326747 CAACAGTGTACCACCTTAGAGC 58.673 50.000 0.00 0.00 34.49 4.09
189 190 3.323979 ACCAACAGTGTACCACCTTAGAG 59.676 47.826 0.00 0.00 34.49 2.43
190 191 3.311091 ACCAACAGTGTACCACCTTAGA 58.689 45.455 0.00 0.00 34.49 2.10
191 192 3.764237 ACCAACAGTGTACCACCTTAG 57.236 47.619 0.00 0.00 34.49 2.18
192 193 3.455177 TGAACCAACAGTGTACCACCTTA 59.545 43.478 0.00 0.00 34.49 2.69
193 194 2.240160 TGAACCAACAGTGTACCACCTT 59.760 45.455 0.00 0.00 34.49 3.50
194 195 1.841277 TGAACCAACAGTGTACCACCT 59.159 47.619 0.00 0.00 34.49 4.00
195 196 1.944709 GTGAACCAACAGTGTACCACC 59.055 52.381 0.00 0.00 34.49 4.61
196 197 2.634600 TGTGAACCAACAGTGTACCAC 58.365 47.619 0.00 1.68 34.10 4.16
197 198 3.210227 CATGTGAACCAACAGTGTACCA 58.790 45.455 0.00 0.00 32.52 3.25
198 199 2.552315 CCATGTGAACCAACAGTGTACC 59.448 50.000 0.00 0.00 32.52 3.34
199 200 2.031157 GCCATGTGAACCAACAGTGTAC 60.031 50.000 0.00 0.00 32.52 2.90
200 201 2.226330 GCCATGTGAACCAACAGTGTA 58.774 47.619 0.00 0.00 32.52 2.90
201 202 1.032014 GCCATGTGAACCAACAGTGT 58.968 50.000 0.00 0.00 32.52 3.55
202 203 0.314935 GGCCATGTGAACCAACAGTG 59.685 55.000 0.00 0.00 32.52 3.66
203 204 0.185901 AGGCCATGTGAACCAACAGT 59.814 50.000 5.01 0.00 32.52 3.55
204 205 2.198827 TAGGCCATGTGAACCAACAG 57.801 50.000 5.01 0.00 32.52 3.16
205 206 2.666272 TTAGGCCATGTGAACCAACA 57.334 45.000 5.01 0.00 0.00 3.33
206 207 5.133221 AGATATTAGGCCATGTGAACCAAC 58.867 41.667 5.01 0.00 0.00 3.77
207 208 5.387113 AGATATTAGGCCATGTGAACCAA 57.613 39.130 5.01 0.00 0.00 3.67
208 209 5.376625 GAAGATATTAGGCCATGTGAACCA 58.623 41.667 5.01 0.00 0.00 3.67
209 210 4.762251 GGAAGATATTAGGCCATGTGAACC 59.238 45.833 5.01 0.00 0.00 3.62
210 211 5.625150 AGGAAGATATTAGGCCATGTGAAC 58.375 41.667 5.01 0.00 0.00 3.18
211 212 5.912149 AGGAAGATATTAGGCCATGTGAA 57.088 39.130 5.01 0.00 0.00 3.18
212 213 6.322931 TCTAGGAAGATATTAGGCCATGTGA 58.677 40.000 5.01 0.00 0.00 3.58
213 214 6.611613 TCTAGGAAGATATTAGGCCATGTG 57.388 41.667 5.01 0.00 0.00 3.21
214 215 7.633018 TTTCTAGGAAGATATTAGGCCATGT 57.367 36.000 5.01 0.00 0.00 3.21
215 216 7.066766 GCATTTCTAGGAAGATATTAGGCCATG 59.933 40.741 5.01 0.00 0.00 3.66
216 217 7.115414 GCATTTCTAGGAAGATATTAGGCCAT 58.885 38.462 5.01 0.00 0.00 4.40
217 218 6.044287 TGCATTTCTAGGAAGATATTAGGCCA 59.956 38.462 5.01 0.00 0.00 5.36
218 219 6.476378 TGCATTTCTAGGAAGATATTAGGCC 58.524 40.000 0.00 0.00 0.00 5.19
219 220 7.360438 CGTTGCATTTCTAGGAAGATATTAGGC 60.360 40.741 0.00 0.00 0.00 3.93
220 221 7.872993 TCGTTGCATTTCTAGGAAGATATTAGG 59.127 37.037 0.00 0.00 0.00 2.69
221 222 8.818141 TCGTTGCATTTCTAGGAAGATATTAG 57.182 34.615 0.00 0.00 0.00 1.73
222 223 9.607988 TTTCGTTGCATTTCTAGGAAGATATTA 57.392 29.630 0.00 0.00 0.00 0.98
223 224 8.506168 TTTCGTTGCATTTCTAGGAAGATATT 57.494 30.769 0.00 0.00 0.00 1.28
224 225 8.506168 TTTTCGTTGCATTTCTAGGAAGATAT 57.494 30.769 0.00 0.00 0.00 1.63
225 226 7.915293 TTTTCGTTGCATTTCTAGGAAGATA 57.085 32.000 0.00 0.00 0.00 1.98
226 227 6.817765 TTTTCGTTGCATTTCTAGGAAGAT 57.182 33.333 0.00 0.00 0.00 2.40
227 228 6.206634 ACATTTTCGTTGCATTTCTAGGAAGA 59.793 34.615 0.00 0.00 0.00 2.87
228 229 6.381801 ACATTTTCGTTGCATTTCTAGGAAG 58.618 36.000 0.00 0.00 0.00 3.46
229 230 6.325919 ACATTTTCGTTGCATTTCTAGGAA 57.674 33.333 0.00 0.00 0.00 3.36
230 231 5.957842 ACATTTTCGTTGCATTTCTAGGA 57.042 34.783 0.00 0.00 0.00 2.94
231 232 6.742718 CACTACATTTTCGTTGCATTTCTAGG 59.257 38.462 0.00 0.00 0.00 3.02
232 233 7.298122 ACACTACATTTTCGTTGCATTTCTAG 58.702 34.615 0.00 0.00 0.00 2.43
233 234 7.197071 ACACTACATTTTCGTTGCATTTCTA 57.803 32.000 0.00 0.00 0.00 2.10
234 235 6.072112 ACACTACATTTTCGTTGCATTTCT 57.928 33.333 0.00 0.00 0.00 2.52
235 236 7.845617 TTACACTACATTTTCGTTGCATTTC 57.154 32.000 0.00 0.00 0.00 2.17
236 237 7.702772 TGTTTACACTACATTTTCGTTGCATTT 59.297 29.630 0.00 0.00 0.00 2.32
237 238 7.197017 TGTTTACACTACATTTTCGTTGCATT 58.803 30.769 0.00 0.00 0.00 3.56
238 239 6.730175 TGTTTACACTACATTTTCGTTGCAT 58.270 32.000 0.00 0.00 0.00 3.96
239 240 6.120378 TGTTTACACTACATTTTCGTTGCA 57.880 33.333 0.00 0.00 0.00 4.08
240 241 5.623673 CCTGTTTACACTACATTTTCGTTGC 59.376 40.000 0.00 0.00 0.00 4.17
241 242 6.721321 ACCTGTTTACACTACATTTTCGTTG 58.279 36.000 0.00 0.00 0.00 4.10
242 243 6.930667 ACCTGTTTACACTACATTTTCGTT 57.069 33.333 0.00 0.00 0.00 3.85
243 244 6.930667 AACCTGTTTACACTACATTTTCGT 57.069 33.333 0.00 0.00 0.00 3.85
244 245 7.698970 ACAAAACCTGTTTACACTACATTTTCG 59.301 33.333 0.00 0.00 32.99 3.46
245 246 8.920509 ACAAAACCTGTTTACACTACATTTTC 57.079 30.769 0.00 0.00 32.99 2.29
246 247 8.745590 AGACAAAACCTGTTTACACTACATTTT 58.254 29.630 0.00 0.00 38.84 1.82
247 248 8.288689 AGACAAAACCTGTTTACACTACATTT 57.711 30.769 0.00 0.00 38.84 2.32
248 249 7.875327 AGACAAAACCTGTTTACACTACATT 57.125 32.000 0.00 0.00 38.84 2.71
249 250 7.660208 CCTAGACAAAACCTGTTTACACTACAT 59.340 37.037 0.00 0.00 38.84 2.29
250 251 6.987992 CCTAGACAAAACCTGTTTACACTACA 59.012 38.462 0.00 0.00 38.84 2.74
251 252 6.426025 CCCTAGACAAAACCTGTTTACACTAC 59.574 42.308 0.00 0.00 38.84 2.73
252 253 6.527423 CCCTAGACAAAACCTGTTTACACTA 58.473 40.000 0.00 0.73 38.84 2.74
253 254 5.374071 CCCTAGACAAAACCTGTTTACACT 58.626 41.667 0.00 0.00 38.84 3.55
254 255 4.023450 GCCCTAGACAAAACCTGTTTACAC 60.023 45.833 0.00 0.00 38.84 2.90
255 256 4.139038 GCCCTAGACAAAACCTGTTTACA 58.861 43.478 0.00 0.00 38.84 2.41
256 257 3.187842 CGCCCTAGACAAAACCTGTTTAC 59.812 47.826 0.00 0.00 38.84 2.01
257 258 3.404899 CGCCCTAGACAAAACCTGTTTA 58.595 45.455 0.00 0.00 38.84 2.01
258 259 2.227194 CGCCCTAGACAAAACCTGTTT 58.773 47.619 0.00 0.00 38.84 2.83
259 260 1.892209 CGCCCTAGACAAAACCTGTT 58.108 50.000 0.00 0.00 38.84 3.16
260 261 0.605589 GCGCCCTAGACAAAACCTGT 60.606 55.000 0.00 0.00 42.61 4.00
261 262 0.605319 TGCGCCCTAGACAAAACCTG 60.605 55.000 4.18 0.00 0.00 4.00
262 263 0.328258 ATGCGCCCTAGACAAAACCT 59.672 50.000 4.18 0.00 0.00 3.50
263 264 0.733150 GATGCGCCCTAGACAAAACC 59.267 55.000 4.18 0.00 0.00 3.27
264 265 1.739067 AGATGCGCCCTAGACAAAAC 58.261 50.000 4.18 0.00 0.00 2.43
265 266 2.764010 TCTAGATGCGCCCTAGACAAAA 59.236 45.455 24.10 9.28 38.08 2.44
266 267 2.384828 TCTAGATGCGCCCTAGACAAA 58.615 47.619 24.10 9.56 38.08 2.83
267 268 2.067365 TCTAGATGCGCCCTAGACAA 57.933 50.000 24.10 9.83 38.08 3.18
268 269 2.294449 ATCTAGATGCGCCCTAGACA 57.706 50.000 27.85 14.68 43.57 3.41
269 270 5.563867 GCATATATCTAGATGCGCCCTAGAC 60.564 48.000 27.85 16.22 43.57 2.59
270 271 4.520874 GCATATATCTAGATGCGCCCTAGA 59.479 45.833 27.61 27.61 44.50 2.43
271 272 4.804108 GCATATATCTAGATGCGCCCTAG 58.196 47.826 21.19 21.19 40.50 3.02
272 273 4.855715 GCATATATCTAGATGCGCCCTA 57.144 45.455 15.79 5.65 40.50 3.53
273 274 3.742433 GCATATATCTAGATGCGCCCT 57.258 47.619 15.79 4.56 40.50 5.19
291 292 9.791801 TCACTTAGATATGCAATAATTAAGGCA 57.208 29.630 14.42 14.42 41.00 4.75
298 299 8.562892 GCTTGTGTCACTTAGATATGCAATAAT 58.437 33.333 4.27 0.00 29.06 1.28
299 300 7.552330 TGCTTGTGTCACTTAGATATGCAATAA 59.448 33.333 4.27 0.00 29.06 1.40
300 301 7.047271 TGCTTGTGTCACTTAGATATGCAATA 58.953 34.615 4.27 0.00 0.00 1.90
301 302 5.882000 TGCTTGTGTCACTTAGATATGCAAT 59.118 36.000 4.27 0.00 0.00 3.56
302 303 5.244755 TGCTTGTGTCACTTAGATATGCAA 58.755 37.500 4.27 0.00 0.00 4.08
303 304 4.831107 TGCTTGTGTCACTTAGATATGCA 58.169 39.130 4.27 0.00 0.00 3.96
304 305 5.728898 GCTTGCTTGTGTCACTTAGATATGC 60.729 44.000 4.27 5.45 0.00 3.14
305 306 5.352293 TGCTTGCTTGTGTCACTTAGATATG 59.648 40.000 4.27 0.32 0.00 1.78
306 307 5.491070 TGCTTGCTTGTGTCACTTAGATAT 58.509 37.500 4.27 0.00 0.00 1.63
307 308 4.893608 TGCTTGCTTGTGTCACTTAGATA 58.106 39.130 4.27 0.00 0.00 1.98
308 309 3.743521 TGCTTGCTTGTGTCACTTAGAT 58.256 40.909 4.27 0.00 0.00 1.98
309 310 3.192541 TGCTTGCTTGTGTCACTTAGA 57.807 42.857 4.27 0.00 0.00 2.10
310 311 4.931601 TCTATGCTTGCTTGTGTCACTTAG 59.068 41.667 4.27 3.19 0.00 2.18
311 312 4.893608 TCTATGCTTGCTTGTGTCACTTA 58.106 39.130 4.27 0.00 0.00 2.24
312 313 3.743521 TCTATGCTTGCTTGTGTCACTT 58.256 40.909 4.27 0.00 0.00 3.16
313 314 3.407424 TCTATGCTTGCTTGTGTCACT 57.593 42.857 4.27 0.00 0.00 3.41
314 315 4.470462 CTTTCTATGCTTGCTTGTGTCAC 58.530 43.478 0.00 0.00 0.00 3.67
315 316 3.503363 CCTTTCTATGCTTGCTTGTGTCA 59.497 43.478 0.00 0.00 0.00 3.58
316 317 3.753272 TCCTTTCTATGCTTGCTTGTGTC 59.247 43.478 0.00 0.00 0.00 3.67
317 318 3.754965 TCCTTTCTATGCTTGCTTGTGT 58.245 40.909 0.00 0.00 0.00 3.72
318 319 4.771590 TTCCTTTCTATGCTTGCTTGTG 57.228 40.909 0.00 0.00 0.00 3.33
319 320 5.789643 TTTTCCTTTCTATGCTTGCTTGT 57.210 34.783 0.00 0.00 0.00 3.16
351 352 8.408601 CGAAGATTCATGTGGATATTTCCTTTT 58.591 33.333 3.72 0.00 43.07 2.27
352 353 7.469181 GCGAAGATTCATGTGGATATTTCCTTT 60.469 37.037 3.72 0.00 43.07 3.11
353 354 6.016777 GCGAAGATTCATGTGGATATTTCCTT 60.017 38.462 3.72 0.00 43.07 3.36
354 355 5.471456 GCGAAGATTCATGTGGATATTTCCT 59.529 40.000 3.72 0.00 43.07 3.36
355 356 5.615544 CGCGAAGATTCATGTGGATATTTCC 60.616 44.000 0.00 0.00 42.94 3.13
356 357 5.050091 ACGCGAAGATTCATGTGGATATTTC 60.050 40.000 15.93 0.00 0.00 2.17
357 358 4.816385 ACGCGAAGATTCATGTGGATATTT 59.184 37.500 15.93 0.00 0.00 1.40
358 359 4.380531 ACGCGAAGATTCATGTGGATATT 58.619 39.130 15.93 0.00 0.00 1.28
359 360 3.995199 ACGCGAAGATTCATGTGGATAT 58.005 40.909 15.93 0.00 0.00 1.63
360 361 3.452755 ACGCGAAGATTCATGTGGATA 57.547 42.857 15.93 0.00 0.00 2.59
361 362 2.315925 ACGCGAAGATTCATGTGGAT 57.684 45.000 15.93 0.00 0.00 3.41
362 363 2.951457 TACGCGAAGATTCATGTGGA 57.049 45.000 15.93 0.00 0.00 4.02
363 364 3.186909 TCTTACGCGAAGATTCATGTGG 58.813 45.455 15.93 0.00 39.36 4.17
373 374 5.117745 CCTGTATCATTGATCTTACGCGAAG 59.882 44.000 15.93 12.57 36.38 3.79
374 375 4.982295 CCTGTATCATTGATCTTACGCGAA 59.018 41.667 15.93 1.35 0.00 4.70
375 376 4.277423 TCCTGTATCATTGATCTTACGCGA 59.723 41.667 15.93 0.00 0.00 5.87
376 377 4.383052 GTCCTGTATCATTGATCTTACGCG 59.617 45.833 3.53 3.53 0.00 6.01
377 378 5.533482 AGTCCTGTATCATTGATCTTACGC 58.467 41.667 1.55 0.00 0.00 4.42
378 379 6.422100 CCAAGTCCTGTATCATTGATCTTACG 59.578 42.308 1.55 0.00 0.00 3.18
379 380 7.500992 TCCAAGTCCTGTATCATTGATCTTAC 58.499 38.462 1.55 0.00 0.00 2.34
380 381 7.675161 TCCAAGTCCTGTATCATTGATCTTA 57.325 36.000 1.55 0.00 0.00 2.10
381 382 6.566079 TCCAAGTCCTGTATCATTGATCTT 57.434 37.500 1.55 0.00 0.00 2.40
382 383 6.100859 ACATCCAAGTCCTGTATCATTGATCT 59.899 38.462 1.55 0.00 0.00 2.75
383 384 6.204301 CACATCCAAGTCCTGTATCATTGATC 59.796 42.308 1.55 0.00 0.00 2.92
384 385 6.060136 CACATCCAAGTCCTGTATCATTGAT 58.940 40.000 4.28 4.28 0.00 2.57
385 386 5.430886 CACATCCAAGTCCTGTATCATTGA 58.569 41.667 0.00 0.00 0.00 2.57
386 387 4.036027 GCACATCCAAGTCCTGTATCATTG 59.964 45.833 0.00 0.00 0.00 2.82
387 388 4.202441 GCACATCCAAGTCCTGTATCATT 58.798 43.478 0.00 0.00 0.00 2.57
388 389 3.200605 TGCACATCCAAGTCCTGTATCAT 59.799 43.478 0.00 0.00 0.00 2.45
389 390 2.571202 TGCACATCCAAGTCCTGTATCA 59.429 45.455 0.00 0.00 0.00 2.15
390 391 3.266510 TGCACATCCAAGTCCTGTATC 57.733 47.619 0.00 0.00 0.00 2.24
391 392 3.719268 TTGCACATCCAAGTCCTGTAT 57.281 42.857 0.00 0.00 0.00 2.29
392 393 3.346315 CATTGCACATCCAAGTCCTGTA 58.654 45.455 0.00 0.00 0.00 2.74
393 394 2.165167 CATTGCACATCCAAGTCCTGT 58.835 47.619 0.00 0.00 0.00 4.00
394 395 1.475280 CCATTGCACATCCAAGTCCTG 59.525 52.381 0.00 0.00 0.00 3.86
395 396 1.843368 CCATTGCACATCCAAGTCCT 58.157 50.000 0.00 0.00 0.00 3.85
396 397 0.174162 GCCATTGCACATCCAAGTCC 59.826 55.000 0.00 0.00 37.47 3.85
397 398 0.889994 TGCCATTGCACATCCAAGTC 59.110 50.000 0.00 0.00 44.23 3.01
398 399 3.054679 TGCCATTGCACATCCAAGT 57.945 47.368 0.00 0.00 44.23 3.16
407 408 1.951602 GCATCTAGATGTGCCATTGCA 59.048 47.619 28.92 0.00 41.26 4.08
408 409 1.951602 TGCATCTAGATGTGCCATTGC 59.048 47.619 28.92 16.97 40.56 3.56
409 410 3.211865 AGTGCATCTAGATGTGCCATTG 58.788 45.455 28.92 7.84 40.56 2.82
410 411 3.572632 AGTGCATCTAGATGTGCCATT 57.427 42.857 28.92 15.30 40.56 3.16
411 412 3.572632 AAGTGCATCTAGATGTGCCAT 57.427 42.857 28.92 12.73 40.56 4.40
412 413 3.354948 AAAGTGCATCTAGATGTGCCA 57.645 42.857 28.92 18.09 40.56 4.92
413 414 3.249559 GCTAAAGTGCATCTAGATGTGCC 59.750 47.826 28.92 18.39 40.56 5.01
414 415 3.873361 TGCTAAAGTGCATCTAGATGTGC 59.127 43.478 28.92 20.27 40.80 4.57
415 416 6.426980 TTTGCTAAAGTGCATCTAGATGTG 57.573 37.500 28.92 11.34 42.96 3.21
416 417 6.656693 AGTTTTGCTAAAGTGCATCTAGATGT 59.343 34.615 28.92 14.60 42.96 3.06
417 418 6.965500 CAGTTTTGCTAAAGTGCATCTAGATG 59.035 38.462 25.64 25.64 42.96 2.90
418 419 6.881065 TCAGTTTTGCTAAAGTGCATCTAGAT 59.119 34.615 19.64 0.00 42.10 1.98
419 420 6.230472 TCAGTTTTGCTAAAGTGCATCTAGA 58.770 36.000 19.64 0.00 42.10 2.43
420 421 6.486253 TCAGTTTTGCTAAAGTGCATCTAG 57.514 37.500 19.64 0.00 42.10 2.43
421 422 6.875948 TTCAGTTTTGCTAAAGTGCATCTA 57.124 33.333 19.64 3.80 42.10 1.98
422 423 5.772825 TTCAGTTTTGCTAAAGTGCATCT 57.227 34.783 19.64 0.00 42.10 2.90
423 424 5.748152 TGTTTCAGTTTTGCTAAAGTGCATC 59.252 36.000 19.64 11.22 42.10 3.91
424 425 5.659463 TGTTTCAGTTTTGCTAAAGTGCAT 58.341 33.333 19.64 0.00 42.10 3.96
425 426 5.065704 TGTTTCAGTTTTGCTAAAGTGCA 57.934 34.783 19.64 9.57 42.10 4.57
426 427 6.588348 ATTGTTTCAGTTTTGCTAAAGTGC 57.412 33.333 19.64 9.57 42.10 4.40
427 428 9.900264 GTTTATTGTTTCAGTTTTGCTAAAGTG 57.100 29.630 18.72 18.72 43.19 3.16
428 429 9.093970 GGTTTATTGTTTCAGTTTTGCTAAAGT 57.906 29.630 0.00 0.00 0.00 2.66
429 430 9.313118 AGGTTTATTGTTTCAGTTTTGCTAAAG 57.687 29.630 0.00 0.00 0.00 1.85
441 442 9.646427 GCCAATGTTTATAGGTTTATTGTTTCA 57.354 29.630 0.00 0.00 0.00 2.69
442 443 8.803799 CGCCAATGTTTATAGGTTTATTGTTTC 58.196 33.333 0.00 0.00 0.00 2.78
443 444 8.524487 TCGCCAATGTTTATAGGTTTATTGTTT 58.476 29.630 0.00 0.00 0.00 2.83
444 445 8.057536 TCGCCAATGTTTATAGGTTTATTGTT 57.942 30.769 0.00 0.00 0.00 2.83
445 446 7.633193 TCGCCAATGTTTATAGGTTTATTGT 57.367 32.000 0.00 0.00 0.00 2.71
446 447 8.567948 AGATCGCCAATGTTTATAGGTTTATTG 58.432 33.333 0.00 0.00 0.00 1.90
447 448 8.691661 AGATCGCCAATGTTTATAGGTTTATT 57.308 30.769 0.00 0.00 0.00 1.40
448 449 8.567948 CAAGATCGCCAATGTTTATAGGTTTAT 58.432 33.333 0.00 0.00 0.00 1.40
456 457 6.686630 TCAAAACAAGATCGCCAATGTTTAT 58.313 32.000 13.16 5.68 43.16 1.40
457 458 6.078202 TCAAAACAAGATCGCCAATGTTTA 57.922 33.333 13.16 2.19 43.16 2.01
673 679 1.371558 GTTGAGGCGTTGGAGACCT 59.628 57.895 0.00 0.00 36.19 3.85
872 919 0.461961 GAGGGAGACGATGGTTGGAG 59.538 60.000 0.00 0.00 0.00 3.86
981 1042 2.674754 GCGGGGGATTTGAGGTGA 59.325 61.111 0.00 0.00 0.00 4.02
983 1044 3.739613 GGGCGGGGGATTTGAGGT 61.740 66.667 0.00 0.00 0.00 3.85
2097 2217 1.747355 CCAAGGTTGACATGGATCTGC 59.253 52.381 0.00 0.00 36.27 4.26
2145 2265 4.254709 TGCTCGCAGGCACCAAGT 62.255 61.111 0.00 0.00 37.29 3.16
2580 2700 5.047802 CACCCTTTGTGTCATCTTAAATGCT 60.048 40.000 0.00 0.00 40.26 3.79
2749 2869 3.830192 GGCCAAATCCTGCCGCAG 61.830 66.667 13.82 13.82 38.00 5.18
3285 3405 5.826208 CCAATCAGGATCATTGAACATCTCA 59.174 40.000 5.95 0.00 41.22 3.27
3312 3432 5.782893 CCAGTGTGGTTAGAATTCCAAAA 57.217 39.130 0.65 0.00 35.38 2.44
3385 3505 6.398234 ACCGATGATAGGATATCTGCATAC 57.602 41.667 2.05 0.00 0.00 2.39
3522 3642 1.004394 TCTACAAGAGCCTCCGACTCA 59.996 52.381 0.00 0.00 36.58 3.41
3538 3658 3.904136 AAAGCACATGCACTTGTCTAC 57.096 42.857 6.64 0.00 45.16 2.59
3609 3729 0.317603 CGTCCTCAACAACTCGACGT 60.318 55.000 0.00 0.00 40.96 4.34
3899 4019 8.434392 ACATTTTTAGTGTTGAGGGAGTAGTAA 58.566 33.333 0.00 0.00 0.00 2.24
3923 4050 4.412199 CCCTCCTTCCCATAATGTAAGACA 59.588 45.833 0.00 0.00 0.00 3.41
4060 4187 2.134789 AGATCGGCCAAGAAAAGCAT 57.865 45.000 2.24 0.00 0.00 3.79
4130 4263 2.096496 GTCCTGCGAATGATTTGGACAG 59.904 50.000 12.34 5.04 42.32 3.51
4221 4357 6.067263 TGACTAAAACATGTTAACCACAGC 57.933 37.500 12.39 0.00 39.40 4.40
4230 4366 7.118496 TCCAACCATTTGACTAAAACATGTT 57.882 32.000 4.92 4.92 34.24 2.71
4241 4377 6.127647 TGAGCAAGATAATCCAACCATTTGAC 60.128 38.462 0.00 0.00 34.24 3.18
4269 4405 3.615224 TTGGTACCGTGGAATAACCTC 57.385 47.619 7.57 0.00 39.86 3.85
4309 4445 1.688197 CCTTCAAGGCCACAACATTGT 59.312 47.619 5.01 0.00 43.36 2.71
4372 4508 7.034397 CGGAGATAGATACACGTGAGAGTATA 58.966 42.308 25.01 2.76 45.70 1.47
4383 4609 1.607628 ACACGGCGGAGATAGATACAC 59.392 52.381 13.24 0.00 0.00 2.90
4398 4648 6.183360 ACACTGAAAGAAGTAAAGAAACACGG 60.183 38.462 0.00 0.00 37.43 4.94
4420 4670 4.762251 ACTGAAAATAGCTGGAGGAAACAC 59.238 41.667 0.00 0.00 0.00 3.32
4453 4703 4.303257 GCAGTAGCTTGGGACACC 57.697 61.111 0.00 0.00 39.29 4.16
4466 4716 4.439426 CGAGTTATTCAGCACTCTAGCAGT 60.439 45.833 0.00 0.00 37.82 4.40
4542 4792 2.283298 AGCAACTGAATACCAGCGATG 58.717 47.619 0.00 0.00 46.81 3.84
4600 4850 5.126396 ACAAAGCATAAAGAGCAAGAACC 57.874 39.130 0.00 0.00 0.00 3.62
4627 4878 2.746277 AGCATGGGACGGCGAAAC 60.746 61.111 16.62 4.28 36.36 2.78
4686 4937 0.836400 AGCGGAAAGAGTCCCTGGAA 60.836 55.000 0.00 0.00 44.60 3.53
4762 5015 4.735132 TGCCGCACCGTGTAGCTC 62.735 66.667 13.74 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.