Multiple sequence alignment - TraesCS4D01G214700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G214700 chr4D 100.000 5628 0 0 1 5628 368012257 368006630 0.000000e+00 10394.0
1 TraesCS4D01G214700 chr4D 90.055 181 16 2 3552 3730 334164379 334164559 3.390000e-57 233.0
2 TraesCS4D01G214700 chr4D 94.937 79 4 0 4962 5040 368007067 368006989 2.130000e-24 124.0
3 TraesCS4D01G214700 chr4D 94.937 79 4 0 5191 5269 368007296 368007218 2.130000e-24 124.0
4 TraesCS4D01G214700 chr4D 100.000 39 0 0 5064 5102 368007158 368007120 7.820000e-09 73.1
5 TraesCS4D01G214700 chr4D 93.478 46 2 1 4858 4902 473810234 473810279 3.640000e-07 67.6
6 TraesCS4D01G214700 chr4B 93.249 3066 117 34 542 3561 453253564 453250543 0.000000e+00 4433.0
7 TraesCS4D01G214700 chr4B 95.176 1078 45 5 3784 4859 453248738 453247666 0.000000e+00 1696.0
8 TraesCS4D01G214700 chr4B 87.664 381 21 9 187 544 453253973 453253596 2.420000e-113 420.0
9 TraesCS4D01G214700 chr4B 90.556 180 16 1 3547 3726 532434986 532435164 2.620000e-58 237.0
10 TraesCS4D01G214700 chr4B 97.500 80 2 0 1 80 453257146 453257067 2.730000e-28 137.0
11 TraesCS4D01G214700 chr4B 90.217 92 9 0 5100 5191 295045571 295045662 2.750000e-23 121.0
12 TraesCS4D01G214700 chr4B 90.789 76 3 2 77 149 453254042 453253968 1.290000e-16 99.0
13 TraesCS4D01G214700 chr4B 89.474 57 2 4 4847 4902 596373329 596373382 1.010000e-07 69.4
14 TraesCS4D01G214700 chr4A 93.793 2771 87 27 166 2912 97252542 97255251 0.000000e+00 4085.0
15 TraesCS4D01G214700 chr4A 95.235 1343 49 10 3723 5061 97258787 97260118 0.000000e+00 2111.0
16 TraesCS4D01G214700 chr4A 88.628 554 33 13 3030 3564 97258246 97258788 0.000000e+00 647.0
17 TraesCS4D01G214700 chr4A 90.949 453 21 4 5188 5628 97260114 97260558 4.860000e-165 592.0
18 TraesCS4D01G214700 chr4A 90.306 196 15 3 4843 5037 97260000 97260192 2.600000e-63 254.0
19 TraesCS4D01G214700 chr4A 93.277 119 8 0 4943 5061 97259902 97260020 5.790000e-40 176.0
20 TraesCS4D01G214700 chr4A 98.734 79 1 0 5188 5266 97260016 97260094 2.110000e-29 141.0
21 TraesCS4D01G214700 chr4A 92.473 93 6 1 1 92 96481234 96481326 1.270000e-26 132.0
22 TraesCS4D01G214700 chr4A 92.473 93 6 1 1 92 96544017 96544109 1.270000e-26 132.0
23 TraesCS4D01G214700 chr4A 94.805 77 4 0 5190 5266 97259920 97259996 2.750000e-23 121.0
24 TraesCS4D01G214700 chr5D 93.889 180 10 1 3559 3737 47329891 47329712 2.580000e-68 270.0
25 TraesCS4D01G214700 chr5D 93.750 48 2 1 5051 5097 380498590 380498543 2.810000e-08 71.3
26 TraesCS4D01G214700 chr5A 93.333 165 11 0 3562 3726 320214243 320214407 1.570000e-60 244.0
27 TraesCS4D01G214700 chr3D 93.333 165 11 0 3560 3724 87925997 87926161 1.570000e-60 244.0
28 TraesCS4D01G214700 chr3D 89.286 84 7 2 1339 1421 23058285 23058367 2.770000e-18 104.0
29 TraesCS4D01G214700 chr3D 100.000 38 0 0 5062 5099 66522860 66522897 2.810000e-08 71.3
30 TraesCS4D01G214700 chr6D 92.353 170 13 0 3559 3728 438321730 438321899 5.630000e-60 243.0
31 TraesCS4D01G214700 chr6D 90.217 92 9 0 5100 5191 388727645 388727554 2.750000e-23 121.0
32 TraesCS4D01G214700 chr6D 95.556 45 2 0 5053 5097 470635908 470635952 7.820000e-09 73.1
33 TraesCS4D01G214700 chr6D 86.441 59 3 4 5177 5230 389333767 389333709 6.090000e-05 60.2
34 TraesCS4D01G214700 chr7A 91.813 171 13 1 3554 3724 494786998 494786829 2.620000e-58 237.0
35 TraesCS4D01G214700 chr7A 97.500 40 0 1 5059 5097 475977184 475977223 3.640000e-07 67.6
36 TraesCS4D01G214700 chr3A 92.262 168 12 1 3558 3724 600923245 600923078 2.620000e-58 237.0
37 TraesCS4D01G214700 chr3A 89.286 84 7 2 1339 1421 32146625 32146707 2.770000e-18 104.0
38 TraesCS4D01G214700 chr7B 89.888 178 18 0 3558 3735 11441309 11441132 4.390000e-56 230.0
39 TraesCS4D01G214700 chr6A 81.407 199 31 3 3165 3362 9357912 9358105 2.100000e-34 158.0
40 TraesCS4D01G214700 chr6A 81.633 98 17 1 3445 3542 457088797 457088893 4.670000e-11 80.5
41 TraesCS4D01G214700 chr6A 95.238 42 2 0 3500 3541 96441994 96441953 3.640000e-07 67.6
42 TraesCS4D01G214700 chr2A 93.478 92 6 0 5100 5191 281749674 281749765 2.730000e-28 137.0
43 TraesCS4D01G214700 chr5B 92.473 93 7 0 5100 5192 693877772 693877680 3.540000e-27 134.0
44 TraesCS4D01G214700 chr5B 90.196 51 5 0 5052 5102 449613178 449613228 3.640000e-07 67.6
45 TraesCS4D01G214700 chr2D 92.391 92 7 0 5100 5191 263505059 263505150 1.270000e-26 132.0
46 TraesCS4D01G214700 chr2D 94.118 51 2 1 5057 5106 52060320 52060270 6.050000e-10 76.8
47 TraesCS4D01G214700 chr2D 97.436 39 1 0 5190 5228 588232389 588232351 3.640000e-07 67.6
48 TraesCS4D01G214700 chr2D 91.304 46 3 1 4955 4999 588232396 588232351 1.690000e-05 62.1
49 TraesCS4D01G214700 chr1B 91.304 92 8 0 5100 5191 606612917 606612826 5.920000e-25 126.0
50 TraesCS4D01G214700 chr1B 89.247 93 10 0 5101 5193 640621572 640621480 3.560000e-22 117.0
51 TraesCS4D01G214700 chr1B 91.525 59 3 2 5045 5103 606612934 606612878 4.670000e-11 80.5
52 TraesCS4D01G214700 chr1B 100.000 40 0 0 5058 5097 117470997 117471036 2.170000e-09 75.0
53 TraesCS4D01G214700 chr1B 91.667 48 4 0 5056 5103 640621581 640621534 3.640000e-07 67.6
54 TraesCS4D01G214700 chr1B 90.000 50 5 0 5180 5229 138037394 138037443 1.310000e-06 65.8
55 TraesCS4D01G214700 chr1B 92.857 42 3 0 3500 3541 331096935 331096894 1.690000e-05 62.1
56 TraesCS4D01G214700 chr1A 91.304 92 8 0 5100 5191 20031587 20031496 5.920000e-25 126.0
57 TraesCS4D01G214700 chr1A 81.633 98 10 5 3457 3548 251340346 251340441 2.170000e-09 75.0
58 TraesCS4D01G214700 chr1A 90.000 50 5 0 5180 5229 80190739 80190788 1.310000e-06 65.8
59 TraesCS4D01G214700 chr6B 87.037 108 12 2 5100 5206 165433892 165433786 2.750000e-23 121.0
60 TraesCS4D01G214700 chr6B 95.238 42 2 0 3500 3541 152083173 152083132 3.640000e-07 67.6
61 TraesCS4D01G214700 chr6B 96.875 32 1 0 4958 4989 332412867 332412898 3.000000e-03 54.7
62 TraesCS4D01G214700 chr3B 90.541 74 7 0 1348 1421 40236262 40236335 1.290000e-16 99.0
63 TraesCS4D01G214700 chr3B 93.617 47 1 2 5055 5100 18873115 18873070 1.010000e-07 69.4
64 TraesCS4D01G214700 chr2B 95.122 41 2 0 5192 5232 775170281 775170241 1.310000e-06 65.8
65 TraesCS4D01G214700 chr7D 91.304 46 3 1 5053 5097 170999741 170999786 1.690000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G214700 chr4D 368006630 368012257 5627 True 10394.000 10394 100.000000 1 5628 1 chr4D.!!$R1 5627
1 TraesCS4D01G214700 chr4B 453247666 453257146 9480 True 1357.000 4433 92.875600 1 4859 5 chr4B.!!$R1 4858
2 TraesCS4D01G214700 chr4A 97252542 97260558 8016 False 1015.875 4085 93.215875 166 5628 8 chr4A.!!$F3 5462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 3686 1.228675 ACCTCAAGCCAAGCCAAGG 60.229 57.895 0.0 0.0 0.00 3.61 F
1424 4552 0.108615 GATGGGCGATGAGGTATCCG 60.109 60.000 0.0 0.0 31.82 4.18 F
1638 4772 0.958091 CCCTCTACCTCAGCGATCAG 59.042 60.000 0.0 0.0 0.00 2.90 F
3455 9475 0.037975 TTCCAACGTACTTCCTCCGC 60.038 55.000 0.0 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 5714 0.253044 GCAGAGGCAAGTGGGTATGA 59.747 55.000 0.0 0.0 40.72 2.15 R
3365 9379 1.338674 TGGTGATGAACGTAAGCCCAG 60.339 52.381 0.0 0.0 45.62 4.45 R
3520 9546 0.611896 ACTCCCTTCGCCCCAAAATG 60.612 55.000 0.0 0.0 0.00 2.32 R
5174 12793 0.115745 AGGTACTCCCTCCGTCCAAA 59.884 55.000 0.0 0.0 40.71 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.380043 ACACAGTTTGAGACTCCATTGAAT 58.620 37.500 0.00 0.00 36.10 2.57
130 3162 8.107095 AGATTCTCAGACTAGAGTTCTACTTGT 58.893 37.037 0.00 0.00 36.97 3.16
142 3174 5.050490 AGTTCTACTTGTACACTTGTGCAG 58.950 41.667 0.00 0.00 41.44 4.41
143 3175 3.390135 TCTACTTGTACACTTGTGCAGC 58.610 45.455 0.00 0.00 41.44 5.25
144 3176 2.036958 ACTTGTACACTTGTGCAGCA 57.963 45.000 0.00 0.00 41.44 4.41
145 3177 2.364632 ACTTGTACACTTGTGCAGCAA 58.635 42.857 0.00 0.00 41.44 3.91
156 3188 4.415501 GCAGCAAGCGACACGACG 62.416 66.667 0.00 0.00 0.00 5.12
157 3189 2.729491 CAGCAAGCGACACGACGA 60.729 61.111 0.00 0.00 35.09 4.20
158 3190 2.429236 AGCAAGCGACACGACGAG 60.429 61.111 0.00 0.00 35.09 4.18
159 3191 2.428569 GCAAGCGACACGACGAGA 60.429 61.111 0.00 0.00 35.09 4.04
160 3192 2.014554 GCAAGCGACACGACGAGAA 61.015 57.895 0.00 0.00 35.09 2.87
161 3193 1.344942 GCAAGCGACACGACGAGAAT 61.345 55.000 0.00 0.00 35.09 2.40
162 3194 1.891178 CAAGCGACACGACGAGAATA 58.109 50.000 0.00 0.00 35.09 1.75
163 3195 1.840741 CAAGCGACACGACGAGAATAG 59.159 52.381 0.00 0.00 35.09 1.73
164 3196 1.366679 AGCGACACGACGAGAATAGA 58.633 50.000 0.00 0.00 35.09 1.98
223 3255 3.325753 GGGACAGCAGGCAGGACT 61.326 66.667 0.00 0.00 0.00 3.85
254 3286 2.034687 GGCAGAGCAAGGCTGGAA 59.965 61.111 0.00 0.00 39.88 3.53
330 3366 1.785208 CATTCCCCATTCCATCTCCCT 59.215 52.381 0.00 0.00 0.00 4.20
331 3367 2.000290 TTCCCCATTCCATCTCCCTT 58.000 50.000 0.00 0.00 0.00 3.95
414 3461 3.506067 AGATTTTTAGCCGGTTTGACCAG 59.494 43.478 1.90 0.00 38.47 4.00
418 3465 2.741486 TAGCCGGTTTGACCAGCACC 62.741 60.000 1.90 0.00 44.03 5.01
540 3603 2.224402 GGCCTCGGCAATTATTCTCTCT 60.224 50.000 10.51 0.00 44.11 3.10
552 3648 5.943706 TTATTCTCTCTCCCGATTACGAG 57.056 43.478 0.00 0.00 42.66 4.18
585 3686 1.228675 ACCTCAAGCCAAGCCAAGG 60.229 57.895 0.00 0.00 0.00 3.61
1133 4260 1.755008 CGTCAGTCTCCCTCCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
1134 4261 1.700985 GTCAGTCTCCCTCCTCCCT 59.299 63.158 0.00 0.00 0.00 4.20
1135 4262 0.396556 GTCAGTCTCCCTCCTCCCTC 60.397 65.000 0.00 0.00 0.00 4.30
1136 4263 1.075600 CAGTCTCCCTCCTCCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1137 4264 2.284151 GTCTCCCTCCTCCCTCCC 59.716 72.222 0.00 0.00 0.00 4.30
1138 4265 2.133201 TCTCCCTCCTCCCTCCCT 59.867 66.667 0.00 0.00 0.00 4.20
1139 4266 2.015726 TCTCCCTCCTCCCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
1140 4267 3.036959 TCCCTCCTCCCTCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
1141 4268 4.179599 CCCTCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1142 4269 3.039526 CCTCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
1143 4270 2.612251 CTCCTCCCTCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
1144 4271 2.018086 CTCCTCCCTCCCTCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
1167 4294 0.402861 TCCTCCTCCCAACCCAAGTT 60.403 55.000 0.00 0.00 36.33 2.66
1172 4299 2.023888 TCCTCCCAACCCAAGTTTTGAA 60.024 45.455 0.00 0.00 32.45 2.69
1239 4366 1.396653 TCAGATCGAGATGCTCTGCA 58.603 50.000 7.90 0.00 44.86 4.41
1286 4413 7.381744 GCTGGATGCGTTATTTCTTAAATTC 57.618 36.000 0.00 0.00 32.38 2.17
1289 4416 7.925993 TGGATGCGTTATTTCTTAAATTCGAT 58.074 30.769 11.12 5.15 32.74 3.59
1292 4419 6.781138 TGCGTTATTTCTTAAATTCGATGCT 58.219 32.000 11.12 0.00 32.74 3.79
1305 4432 7.856145 AAATTCGATGCTTCTTTGATCTACT 57.144 32.000 0.00 0.00 0.00 2.57
1308 4435 5.586339 TCGATGCTTCTTTGATCTACTGAG 58.414 41.667 0.00 0.00 0.00 3.35
1327 4454 1.280421 AGGAACTCCAGAGTCAATGCC 59.720 52.381 0.00 0.00 41.58 4.40
1351 4479 1.439353 CCTTGTTGCTGTGTCGCAGT 61.439 55.000 14.69 0.00 46.64 4.40
1424 4552 0.108615 GATGGGCGATGAGGTATCCG 60.109 60.000 0.00 0.00 31.82 4.18
1485 4619 6.671614 TGTACTGTTTTCAAGATCGTTGTT 57.328 33.333 0.00 0.00 0.00 2.83
1488 4622 5.810525 ACTGTTTTCAAGATCGTTGTTCTG 58.189 37.500 5.26 0.00 0.00 3.02
1618 4752 3.924073 TCATCCAACACAAACTATCGTCG 59.076 43.478 0.00 0.00 0.00 5.12
1638 4772 0.958091 CCCTCTACCTCAGCGATCAG 59.042 60.000 0.00 0.00 0.00 2.90
1663 4797 4.332819 CCACTCCAGAAATACCAAACGATC 59.667 45.833 0.00 0.00 0.00 3.69
1759 4893 1.284657 CTGCCATGCTGACTAGAACG 58.715 55.000 0.00 0.00 0.00 3.95
1764 4898 2.416547 CCATGCTGACTAGAACGTTTGG 59.583 50.000 0.46 0.00 0.00 3.28
2007 5144 2.283145 AGCCAGACATAATCCATGCC 57.717 50.000 0.00 0.00 38.29 4.40
2236 5373 6.868864 TCAGTGTTGTTAAGAGATTAGCACTC 59.131 38.462 0.00 0.00 33.13 3.51
2345 5482 3.446442 AGCCCATTGTCATCACTTCTT 57.554 42.857 0.00 0.00 0.00 2.52
2367 5504 7.990917 TCTTTTATGTTCTGTACAAAAGTGCA 58.009 30.769 11.67 0.00 40.89 4.57
2577 5714 6.555463 TTTCAACCCTTCGTCTATCCTAAT 57.445 37.500 0.00 0.00 0.00 1.73
2886 6023 7.244886 TCCCATACACAGAATATACCATCAG 57.755 40.000 0.00 0.00 0.00 2.90
2889 6026 8.035394 CCCATACACAGAATATACCATCAGTAC 58.965 40.741 0.00 0.00 32.46 2.73
3050 9064 9.739276 TCCTTTTGTATGATCAACTTTATCAGT 57.261 29.630 0.00 0.00 36.82 3.41
3051 9065 9.778993 CCTTTTGTATGATCAACTTTATCAGTG 57.221 33.333 0.00 0.00 36.82 3.66
3263 9277 3.589288 ACAGAGTTATGGAAAAGCTCCCT 59.411 43.478 0.00 0.00 44.69 4.20
3365 9379 5.934625 AGTAAGACACAAACCTGATGACATC 59.065 40.000 8.59 8.59 0.00 3.06
3383 9397 2.380084 TCTGGGCTTACGTTCATCAC 57.620 50.000 0.00 0.00 0.00 3.06
3393 9407 1.695242 ACGTTCATCACCAACTACCCA 59.305 47.619 0.00 0.00 0.00 4.51
3394 9408 2.073816 CGTTCATCACCAACTACCCAC 58.926 52.381 0.00 0.00 0.00 4.61
3403 9417 5.310451 TCACCAACTACCCACTATTGAAAC 58.690 41.667 0.00 0.00 0.00 2.78
3414 9428 8.281212 ACCCACTATTGAAACAACATAATCTC 57.719 34.615 0.00 0.00 0.00 2.75
3448 9468 4.761975 TCTTTCACACTTCCAACGTACTT 58.238 39.130 0.00 0.00 0.00 2.24
3455 9475 0.037975 TTCCAACGTACTTCCTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
3496 9522 7.740346 CGTTGATTTAGTACAAAGTTAGTGCAG 59.260 37.037 0.00 0.00 0.00 4.41
3520 9546 5.444745 GCTTTGTACTAAATCAGCGACACTC 60.445 44.000 0.00 0.00 0.00 3.51
3532 9564 0.953471 CGACACTCATTTTGGGGCGA 60.953 55.000 0.00 0.00 0.00 5.54
3567 9599 7.801716 TGCTAATTCACAAACCATATACTCC 57.198 36.000 0.00 0.00 0.00 3.85
3570 9602 7.173390 GCTAATTCACAAACCATATACTCCCTC 59.827 40.741 0.00 0.00 0.00 4.30
3572 9604 3.386726 TCACAAACCATATACTCCCTCCG 59.613 47.826 0.00 0.00 0.00 4.63
3573 9605 3.134081 CACAAACCATATACTCCCTCCGT 59.866 47.826 0.00 0.00 0.00 4.69
3574 9606 3.778629 ACAAACCATATACTCCCTCCGTT 59.221 43.478 0.00 0.00 0.00 4.44
3581 9928 5.484290 CCATATACTCCCTCCGTTCCTAAAT 59.516 44.000 0.00 0.00 0.00 1.40
3582 9929 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
3583 9930 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3593 9940 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3594 9941 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3595 9942 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
3596 9943 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
3620 9967 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
3621 9968 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
3622 9969 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
3623 9970 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
3624 9971 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
3630 9977 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3631 9978 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3632 9979 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3633 9980 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3634 9981 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3635 9982 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3636 9983 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3637 9984 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3639 9986 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3641 9988 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3642 9989 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3665 10012 8.621921 CACTCTAAAGTGTGTCTATGTACATC 57.378 38.462 12.68 0.00 46.52 3.06
3666 10013 7.702772 CACTCTAAAGTGTGTCTATGTACATCC 59.297 40.741 12.68 2.44 46.52 3.51
3667 10014 6.792326 TCTAAAGTGTGTCTATGTACATCCG 58.208 40.000 12.68 5.19 0.00 4.18
3668 10015 5.401531 AAAGTGTGTCTATGTACATCCGT 57.598 39.130 12.68 0.00 0.00 4.69
3669 10016 6.519679 AAAGTGTGTCTATGTACATCCGTA 57.480 37.500 12.68 0.00 0.00 4.02
3670 10017 6.710597 AAGTGTGTCTATGTACATCCGTAT 57.289 37.500 12.68 0.00 0.00 3.06
3671 10018 6.710597 AGTGTGTCTATGTACATCCGTATT 57.289 37.500 12.68 0.00 0.00 1.89
3672 10019 7.108841 AGTGTGTCTATGTACATCCGTATTT 57.891 36.000 12.68 0.00 0.00 1.40
3673 10020 8.229253 AGTGTGTCTATGTACATCCGTATTTA 57.771 34.615 12.68 0.00 0.00 1.40
3674 10021 8.350722 AGTGTGTCTATGTACATCCGTATTTAG 58.649 37.037 12.68 1.49 0.00 1.85
3675 10022 8.133627 GTGTGTCTATGTACATCCGTATTTAGT 58.866 37.037 12.68 0.00 0.00 2.24
3676 10023 8.347771 TGTGTCTATGTACATCCGTATTTAGTC 58.652 37.037 12.68 0.32 0.00 2.59
3678 10025 7.020010 GTCTATGTACATCCGTATTTAGTCCG 58.980 42.308 12.68 0.00 0.00 4.79
3679 10026 5.779529 ATGTACATCCGTATTTAGTCCGT 57.220 39.130 1.41 0.00 0.00 4.69
3680 10027 6.882610 ATGTACATCCGTATTTAGTCCGTA 57.117 37.500 1.41 0.00 0.00 4.02
3681 10028 6.882610 TGTACATCCGTATTTAGTCCGTAT 57.117 37.500 0.00 0.00 0.00 3.06
3683 10030 6.486320 TGTACATCCGTATTTAGTCCGTATCA 59.514 38.462 0.00 0.00 0.00 2.15
3684 10031 6.395426 ACATCCGTATTTAGTCCGTATCAA 57.605 37.500 0.00 0.00 0.00 2.57
3685 10032 6.808829 ACATCCGTATTTAGTCCGTATCAAA 58.191 36.000 0.00 0.00 0.00 2.69
3686 10033 7.267128 ACATCCGTATTTAGTCCGTATCAAAA 58.733 34.615 0.00 0.00 0.00 2.44
3687 10034 7.929785 ACATCCGTATTTAGTCCGTATCAAAAT 59.070 33.333 0.00 0.00 0.00 1.82
3688 10035 7.935338 TCCGTATTTAGTCCGTATCAAAATC 57.065 36.000 0.00 0.00 0.00 2.17
3689 10036 7.719483 TCCGTATTTAGTCCGTATCAAAATCT 58.281 34.615 0.00 0.00 0.00 2.40
3690 10037 7.864379 TCCGTATTTAGTCCGTATCAAAATCTC 59.136 37.037 0.00 0.00 0.00 2.75
3691 10038 7.115947 CCGTATTTAGTCCGTATCAAAATCTCC 59.884 40.741 0.00 0.00 0.00 3.71
3692 10039 7.650504 CGTATTTAGTCCGTATCAAAATCTCCA 59.349 37.037 0.00 0.00 0.00 3.86
3693 10040 9.321562 GTATTTAGTCCGTATCAAAATCTCCAA 57.678 33.333 0.00 0.00 0.00 3.53
3695 10042 8.624367 TTTAGTCCGTATCAAAATCTCCAAAA 57.376 30.769 0.00 0.00 0.00 2.44
3696 10043 8.624367 TTAGTCCGTATCAAAATCTCCAAAAA 57.376 30.769 0.00 0.00 0.00 1.94
3697 10044 7.145932 AGTCCGTATCAAAATCTCCAAAAAG 57.854 36.000 0.00 0.00 0.00 2.27
3698 10045 6.940298 AGTCCGTATCAAAATCTCCAAAAAGA 59.060 34.615 0.00 0.00 0.00 2.52
3699 10046 7.021790 GTCCGTATCAAAATCTCCAAAAAGAC 58.978 38.462 0.00 0.00 0.00 3.01
3700 10047 6.940298 TCCGTATCAAAATCTCCAAAAAGACT 59.060 34.615 0.00 0.00 0.00 3.24
3701 10048 7.447238 TCCGTATCAAAATCTCCAAAAAGACTT 59.553 33.333 0.00 0.00 0.00 3.01
3715 10062 9.169592 TCCAAAAAGACTTATATTTAGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
3716 10063 9.169592 CCAAAAAGACTTATATTTAGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
3718 10065 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3720 10067 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3721 10068 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3722 10069 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3724 10071 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
3725 10072 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
3727 10074 6.607004 ATTTAGGAACGGAGGGAGTATATG 57.393 41.667 0.00 0.00 0.00 1.78
3728 10075 3.614568 AGGAACGGAGGGAGTATATGT 57.385 47.619 0.00 0.00 0.00 2.29
3743 10090 8.244113 GGGAGTATATGTTAAAATATTGGCTGC 58.756 37.037 3.44 5.77 0.00 5.25
3760 10107 1.394917 CTGCGTTAGCTTACTTGCTGG 59.605 52.381 0.85 0.00 43.87 4.85
3770 10117 4.081862 AGCTTACTTGCTGGTGAACGTATA 60.082 41.667 0.00 0.00 42.33 1.47
3828 11442 1.756538 TCACTGCTGACTGAGTTGTGA 59.243 47.619 0.00 0.00 35.29 3.58
3829 11443 2.133553 CACTGCTGACTGAGTTGTGAG 58.866 52.381 0.00 0.00 32.36 3.51
3830 11444 2.034878 ACTGCTGACTGAGTTGTGAGA 58.965 47.619 0.00 0.00 0.00 3.27
3938 11552 6.771267 AGGGTTTGTTTCTTCAGTAAGTTAGG 59.229 38.462 0.00 0.00 34.13 2.69
3945 11559 8.262227 TGTTTCTTCAGTAAGTTAGGAACTCAA 58.738 33.333 0.00 0.00 41.91 3.02
3947 11561 7.834881 TCTTCAGTAAGTTAGGAACTCAAGA 57.165 36.000 0.00 0.00 41.91 3.02
3951 11565 8.108551 TCAGTAAGTTAGGAACTCAAGAGTAC 57.891 38.462 2.72 0.31 41.91 2.73
3957 11571 6.151480 AGTTAGGAACTCAAGAGTACTACTGC 59.849 42.308 2.72 0.00 41.58 4.40
3987 11601 4.570930 ACTTCTGGACTAAGCAAGTAAGC 58.429 43.478 0.00 0.00 39.07 3.09
4070 11684 5.808540 CCAAATGAGAACATGGTATGCTTTG 59.191 40.000 0.00 0.15 36.79 2.77
4071 11685 6.392354 CAAATGAGAACATGGTATGCTTTGT 58.608 36.000 0.00 0.00 36.79 2.83
4074 11688 7.701539 ATGAGAACATGGTATGCTTTGTTTA 57.298 32.000 0.00 0.00 35.21 2.01
4113 11728 5.897377 AGTGATAACCAACTTATTGTGCC 57.103 39.130 0.00 0.00 33.60 5.01
4160 11775 5.504853 GGTTTCCTCTTCAATTCTGGAGAT 58.495 41.667 0.00 0.00 36.54 2.75
4170 11785 4.935205 TCAATTCTGGAGATGTTTACACCG 59.065 41.667 0.00 0.00 0.00 4.94
4175 11790 2.631062 TGGAGATGTTTACACCGTCTGT 59.369 45.455 0.00 0.00 36.82 3.41
4351 11967 1.280421 GAGTCCATGGCTTCTGGAGTT 59.720 52.381 6.96 2.17 44.66 3.01
4414 12030 0.178964 CCAAGGACAAGGAGGGCAAA 60.179 55.000 0.00 0.00 0.00 3.68
4465 12081 3.425578 CGAGTGCGTGAGGAAGATT 57.574 52.632 0.00 0.00 0.00 2.40
4471 12087 2.548057 GTGCGTGAGGAAGATTGAACAA 59.452 45.455 0.00 0.00 0.00 2.83
4501 12117 1.324005 CGAAGGACCTCAGGGAGTCC 61.324 65.000 0.00 0.00 33.36 3.85
4860 12478 9.245481 ACTGCTAGTCTGTTTCTACTAATTACT 57.755 33.333 0.00 0.00 0.00 2.24
4927 12546 1.570501 TGATGCAAGGGCCCTCTAAAT 59.429 47.619 28.84 16.77 40.13 1.40
4930 12549 1.640670 TGCAAGGGCCCTCTAAATTCT 59.359 47.619 28.84 2.83 40.13 2.40
4940 12559 4.022503 GCCCTCTAAATTCTCAATGCATCC 60.023 45.833 0.00 0.00 0.00 3.51
4959 12578 8.662781 TGCATCCATCTGTTTCTACTTATTAC 57.337 34.615 0.00 0.00 0.00 1.89
4960 12579 7.715249 TGCATCCATCTGTTTCTACTTATTACC 59.285 37.037 0.00 0.00 0.00 2.85
4992 12611 9.320406 TGTTCTTAAATATAAGACGTTTTTGCG 57.680 29.630 0.00 0.00 45.52 4.85
5020 12639 1.610379 GGTTGATGCAAGGGCCCTT 60.610 57.895 32.48 32.48 40.13 3.95
5065 12684 9.939424 ATCTGTTTCTACTAATTAGTACTCCCT 57.061 33.333 19.30 0.00 37.73 4.20
5066 12685 9.406113 TCTGTTTCTACTAATTAGTACTCCCTC 57.594 37.037 19.30 9.75 37.73 4.30
5067 12686 8.530804 TGTTTCTACTAATTAGTACTCCCTCC 57.469 38.462 19.30 6.59 37.73 4.30
5068 12687 7.284034 TGTTTCTACTAATTAGTACTCCCTCCG 59.716 40.741 19.30 8.98 37.73 4.63
5069 12688 6.506538 TCTACTAATTAGTACTCCCTCCGT 57.493 41.667 19.30 0.00 37.73 4.69
5070 12689 6.529220 TCTACTAATTAGTACTCCCTCCGTC 58.471 44.000 19.30 0.00 37.73 4.79
5071 12690 4.468713 ACTAATTAGTACTCCCTCCGTCC 58.531 47.826 16.60 0.00 34.13 4.79
5072 12691 3.393426 AATTAGTACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
5073 12692 2.905415 TTAGTACTCCCTCCGTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
5074 12693 2.905415 TAGTACTCCCTCCGTCCAAA 57.095 50.000 0.00 0.00 0.00 3.28
5075 12694 2.019807 AGTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44
5076 12695 2.332117 AGTACTCCCTCCGTCCAAAAA 58.668 47.619 0.00 0.00 0.00 1.94
5077 12696 2.910977 AGTACTCCCTCCGTCCAAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5078 12697 4.098894 AGTACTCCCTCCGTCCAAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5079 12698 4.533311 AGTACTCCCTCCGTCCAAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
5080 12699 3.951663 ACTCCCTCCGTCCAAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
5081 12700 3.329814 ACTCCCTCCGTCCAAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
5082 12701 3.681593 TCCCTCCGTCCAAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
5083 12702 3.073356 TCCCTCCGTCCAAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
5084 12703 3.439129 CCCTCCGTCCAAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
5085 12704 4.324267 CCTCCGTCCAAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
5086 12705 4.392138 CCTCCGTCCAAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
5087 12706 4.963373 TCCGTCCAAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
5088 12707 5.369833 TCCGTCCAAAAATAAGTGTCTCAA 58.630 37.500 0.00 0.00 0.00 3.02
5089 12708 5.237779 TCCGTCCAAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
5090 12709 5.238650 CCGTCCAAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
5091 12710 6.238648 CCGTCCAAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
5092 12711 7.193595 CGTCCAAAAATAAGTGTCTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
5093 12712 7.165812 CGTCCAAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
5094 12713 7.973944 GTCCAAAAATAAGTGTCTCAACTTTGT 59.026 33.333 0.00 0.00 40.77 2.83
5095 12714 9.179909 TCCAAAAATAAGTGTCTCAACTTTGTA 57.820 29.630 0.00 0.00 40.77 2.41
5096 12715 9.233232 CCAAAAATAAGTGTCTCAACTTTGTAC 57.767 33.333 0.00 0.00 40.77 2.90
5097 12716 9.233232 CAAAAATAAGTGTCTCAACTTTGTACC 57.767 33.333 0.00 0.00 40.77 3.34
5098 12717 8.514330 AAAATAAGTGTCTCAACTTTGTACCA 57.486 30.769 0.00 0.00 40.77 3.25
5099 12718 7.492352 AATAAGTGTCTCAACTTTGTACCAC 57.508 36.000 0.00 0.00 40.77 4.16
5100 12719 3.805207 AGTGTCTCAACTTTGTACCACC 58.195 45.455 0.00 0.00 0.00 4.61
5101 12720 3.454812 AGTGTCTCAACTTTGTACCACCT 59.545 43.478 0.00 0.00 0.00 4.00
5102 12721 3.808174 GTGTCTCAACTTTGTACCACCTC 59.192 47.826 0.00 0.00 0.00 3.85
5103 12722 3.181458 TGTCTCAACTTTGTACCACCTCC 60.181 47.826 0.00 0.00 0.00 4.30
5104 12723 2.036733 TCTCAACTTTGTACCACCTCCG 59.963 50.000 0.00 0.00 0.00 4.63
5105 12724 1.764134 TCAACTTTGTACCACCTCCGT 59.236 47.619 0.00 0.00 0.00 4.69
5106 12725 2.140717 CAACTTTGTACCACCTCCGTC 58.859 52.381 0.00 0.00 0.00 4.79
5107 12726 0.683412 ACTTTGTACCACCTCCGTCC 59.317 55.000 0.00 0.00 0.00 4.79
5108 12727 0.682852 CTTTGTACCACCTCCGTCCA 59.317 55.000 0.00 0.00 0.00 4.02
5109 12728 1.071071 CTTTGTACCACCTCCGTCCAA 59.929 52.381 0.00 0.00 0.00 3.53
5110 12729 1.129917 TTGTACCACCTCCGTCCAAA 58.870 50.000 0.00 0.00 0.00 3.28
5111 12730 1.129917 TGTACCACCTCCGTCCAAAA 58.870 50.000 0.00 0.00 0.00 2.44
5112 12731 1.489649 TGTACCACCTCCGTCCAAAAA 59.510 47.619 0.00 0.00 0.00 1.94
5113 12732 2.106857 TGTACCACCTCCGTCCAAAAAT 59.893 45.455 0.00 0.00 0.00 1.82
5114 12733 3.327172 TGTACCACCTCCGTCCAAAAATA 59.673 43.478 0.00 0.00 0.00 1.40
5115 12734 3.512219 ACCACCTCCGTCCAAAAATAA 57.488 42.857 0.00 0.00 0.00 1.40
5116 12735 3.418047 ACCACCTCCGTCCAAAAATAAG 58.582 45.455 0.00 0.00 0.00 1.73
5117 12736 3.181437 ACCACCTCCGTCCAAAAATAAGT 60.181 43.478 0.00 0.00 0.00 2.24
5118 12737 3.190535 CCACCTCCGTCCAAAAATAAGTG 59.809 47.826 0.00 0.00 0.00 3.16
5119 12738 3.818773 CACCTCCGTCCAAAAATAAGTGT 59.181 43.478 0.00 0.00 0.00 3.55
5120 12739 4.070009 ACCTCCGTCCAAAAATAAGTGTC 58.930 43.478 0.00 0.00 0.00 3.67
5121 12740 4.202430 ACCTCCGTCCAAAAATAAGTGTCT 60.202 41.667 0.00 0.00 0.00 3.41
5122 12741 4.392138 CCTCCGTCCAAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
5123 12742 4.963373 TCCGTCCAAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
5124 12743 5.369833 TCCGTCCAAAAATAAGTGTCTCAA 58.630 37.500 0.00 0.00 0.00 3.02
5125 12744 5.237779 TCCGTCCAAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
5126 12745 5.238650 CCGTCCAAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
5127 12746 6.238648 CCGTCCAAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
5128 12747 7.193595 CGTCCAAAAATAAGTGTCTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
5129 12748 7.165812 CGTCCAAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
5130 12749 7.973944 GTCCAAAAATAAGTGTCTCAACTTTGT 59.026 33.333 0.00 0.00 40.77 2.83
5131 12750 9.179909 TCCAAAAATAAGTGTCTCAACTTTGTA 57.820 29.630 0.00 0.00 40.77 2.41
5132 12751 9.233232 CCAAAAATAAGTGTCTCAACTTTGTAC 57.767 33.333 0.00 0.00 40.77 2.90
5133 12752 9.233232 CAAAAATAAGTGTCTCAACTTTGTACC 57.767 33.333 0.00 0.00 40.77 3.34
5134 12753 8.514330 AAAATAAGTGTCTCAACTTTGTACCA 57.486 30.769 0.00 0.00 40.77 3.25
5135 12754 7.492352 AATAAGTGTCTCAACTTTGTACCAC 57.508 36.000 0.00 0.00 40.77 4.16
5136 12755 3.805207 AGTGTCTCAACTTTGTACCACC 58.195 45.455 0.00 0.00 0.00 4.61
5137 12756 3.454812 AGTGTCTCAACTTTGTACCACCT 59.545 43.478 0.00 0.00 0.00 4.00
5138 12757 4.080526 AGTGTCTCAACTTTGTACCACCTT 60.081 41.667 0.00 0.00 0.00 3.50
5139 12758 4.638865 GTGTCTCAACTTTGTACCACCTTT 59.361 41.667 0.00 0.00 0.00 3.11
5140 12759 5.124936 GTGTCTCAACTTTGTACCACCTTTT 59.875 40.000 0.00 0.00 0.00 2.27
5141 12760 5.124776 TGTCTCAACTTTGTACCACCTTTTG 59.875 40.000 0.00 0.00 0.00 2.44
5142 12761 5.124936 GTCTCAACTTTGTACCACCTTTTGT 59.875 40.000 0.00 0.00 0.00 2.83
5143 12762 6.316890 GTCTCAACTTTGTACCACCTTTTGTA 59.683 38.462 0.00 0.00 0.00 2.41
5144 12763 7.012989 GTCTCAACTTTGTACCACCTTTTGTAT 59.987 37.037 0.00 0.00 0.00 2.29
5145 12764 8.212312 TCTCAACTTTGTACCACCTTTTGTATA 58.788 33.333 0.00 0.00 0.00 1.47
5146 12765 8.749026 TCAACTTTGTACCACCTTTTGTATAA 57.251 30.769 0.00 0.00 0.00 0.98
5147 12766 9.186837 TCAACTTTGTACCACCTTTTGTATAAA 57.813 29.630 0.00 0.00 30.60 1.40
5148 12767 9.804758 CAACTTTGTACCACCTTTTGTATAAAA 57.195 29.630 0.00 0.00 30.87 1.52
5179 12798 9.569122 ACTAAGCTTAAGACACTTATTTTTGGA 57.431 29.630 6.67 0.00 0.00 3.53
5180 12799 9.827411 CTAAGCTTAAGACACTTATTTTTGGAC 57.173 33.333 6.67 0.00 0.00 4.02
5181 12800 6.899114 AGCTTAAGACACTTATTTTTGGACG 58.101 36.000 6.67 0.00 0.00 4.79
5182 12801 6.072673 AGCTTAAGACACTTATTTTTGGACGG 60.073 38.462 6.67 0.00 0.00 4.79
5183 12802 6.072893 GCTTAAGACACTTATTTTTGGACGGA 60.073 38.462 6.67 0.00 0.00 4.69
5184 12803 5.941948 AAGACACTTATTTTTGGACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
5185 12804 4.324267 AGACACTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
5186 12805 3.418047 ACACTTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
5187 12806 3.073356 ACACTTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
5188 12807 3.689649 CACTTATTTTTGGACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
5189 12808 3.329814 ACTTATTTTTGGACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
5190 12809 4.533311 ACTTATTTTTGGACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
5191 12810 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
5228 12847 9.691362 AAATATAAGACGTTTTTGCAGTTCAAT 57.309 25.926 0.00 0.00 34.12 2.57
5236 12855 5.746245 CGTTTTTGCAGTTCAATAAGGTTGA 59.254 36.000 0.00 0.00 34.12 3.18
5242 12861 5.221402 TGCAGTTCAATAAGGTTGATGCAAA 60.221 36.000 13.54 0.00 39.80 3.68
5280 12899 5.010516 CCCAATGCATTAACCCATTCGATTA 59.989 40.000 12.53 0.00 29.71 1.75
5313 12936 0.179032 TCGAAACTGCCTTGCTTCCA 60.179 50.000 0.00 0.00 0.00 3.53
5323 12946 1.341209 CCTTGCTTCCAAGTTCCAACC 59.659 52.381 3.13 0.00 45.57 3.77
5332 12955 1.882623 CAAGTTCCAACCAGAAGAGGC 59.117 52.381 0.00 0.00 0.00 4.70
5348 12971 4.625607 AGAGGCGCTAATAGGCTTAAAT 57.374 40.909 7.64 0.00 44.86 1.40
5377 13000 5.460419 GCTCTACCACTGTCGATCATTTTAG 59.540 44.000 0.00 0.00 0.00 1.85
5385 13008 6.256539 CACTGTCGATCATTTTAGCAGTACAT 59.743 38.462 0.00 0.00 34.47 2.29
5394 13017 6.658816 TCATTTTAGCAGTACATGACCAACAT 59.341 34.615 0.00 0.00 40.17 2.71
5412 13035 6.098679 CCAACATGAGAAACACACAAGAAAA 58.901 36.000 0.00 0.00 0.00 2.29
5462 13093 3.938334 AGATGTAATGTACACGCAATGCA 59.062 39.130 5.91 0.00 42.23 3.96
5482 13113 5.105752 TGCACACAAAATAGTTTTCCACAC 58.894 37.500 0.00 0.00 0.00 3.82
5573 13204 6.675002 GCTCTGCATACACAATCTCAGAAAAG 60.675 42.308 0.00 0.00 31.24 2.27
5574 13205 5.645067 TCTGCATACACAATCTCAGAAAAGG 59.355 40.000 0.00 0.00 0.00 3.11
5590 13221 8.567285 TCAGAAAAGGGAAAACTTCTATCATC 57.433 34.615 0.00 0.00 0.00 2.92
5591 13222 7.611855 TCAGAAAAGGGAAAACTTCTATCATCC 59.388 37.037 0.00 0.00 0.00 3.51
5592 13223 6.892456 AGAAAAGGGAAAACTTCTATCATCCC 59.108 38.462 0.28 0.28 45.61 3.85
5596 13227 4.279420 GGGAAAACTTCTATCATCCCATGC 59.721 45.833 3.81 0.00 44.81 4.06
5597 13228 4.889409 GGAAAACTTCTATCATCCCATGCA 59.111 41.667 0.00 0.00 0.00 3.96
5608 13239 3.590182 TCATCCCATGCATCCATGTATCT 59.410 43.478 0.00 0.00 45.90 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.827089 TTGCCTTGCAAGCCAGCTTA 60.827 50.000 21.43 8.78 43.99 3.09
63 64 5.778542 AGAGGTGCTTAATTCCTACTCCTA 58.221 41.667 0.00 0.00 0.00 2.94
142 3174 1.344942 ATTCTCGTCGTGTCGCTTGC 61.345 55.000 0.00 0.00 0.00 4.01
143 3175 1.840741 CTATTCTCGTCGTGTCGCTTG 59.159 52.381 0.00 0.00 0.00 4.01
144 3176 1.736126 TCTATTCTCGTCGTGTCGCTT 59.264 47.619 0.00 0.00 0.00 4.68
145 3177 1.366679 TCTATTCTCGTCGTGTCGCT 58.633 50.000 0.00 0.00 0.00 4.93
146 3178 2.169663 TTCTATTCTCGTCGTGTCGC 57.830 50.000 0.00 0.00 0.00 5.19
212 3244 3.368571 GCCAACAGTCCTGCCTGC 61.369 66.667 0.00 0.00 35.83 4.85
254 3286 2.224209 CGGCCAGGTAGGAATACGATTT 60.224 50.000 2.24 0.00 41.22 2.17
330 3366 4.704833 GCAGCCAGCACGGGAGAA 62.705 66.667 0.00 0.00 44.79 2.87
517 3580 1.166531 AGAATAATTGCCGAGGCCGC 61.167 55.000 12.05 0.00 41.09 6.53
540 3603 2.480759 GCTTTGCTACTCGTAATCGGGA 60.481 50.000 0.00 0.00 40.39 5.14
552 3648 0.875059 GAGGTGTGTGGCTTTGCTAC 59.125 55.000 0.00 0.00 40.44 3.58
585 3686 2.048127 GGACTGACGACCTGGTGC 60.048 66.667 2.82 0.00 0.00 5.01
1133 4260 0.105709 GAGGAGGAAGAGGGAGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
1134 4261 1.595058 GGAGGAGGAAGAGGGAGGGA 61.595 65.000 0.00 0.00 0.00 4.20
1135 4262 1.074850 GGAGGAGGAAGAGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
1136 4263 0.105709 GAGGAGGAGGAAGAGGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1137 4264 0.105709 GGAGGAGGAGGAAGAGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
1138 4265 1.595058 GGGAGGAGGAGGAAGAGGGA 61.595 65.000 0.00 0.00 0.00 4.20
1139 4266 1.074850 GGGAGGAGGAGGAAGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
1140 4267 0.043334 TTGGGAGGAGGAGGAAGAGG 59.957 60.000 0.00 0.00 0.00 3.69
1141 4268 1.199615 GTTGGGAGGAGGAGGAAGAG 58.800 60.000 0.00 0.00 0.00 2.85
1142 4269 0.252742 GGTTGGGAGGAGGAGGAAGA 60.253 60.000 0.00 0.00 0.00 2.87
1143 4270 1.275421 GGGTTGGGAGGAGGAGGAAG 61.275 65.000 0.00 0.00 0.00 3.46
1144 4271 1.229853 GGGTTGGGAGGAGGAGGAA 60.230 63.158 0.00 0.00 0.00 3.36
1185 4312 2.299297 AGCATACTACTGTAATCCGGCC 59.701 50.000 0.00 0.00 31.80 6.13
1246 4373 2.126888 GCGACCCAATTGTGCACG 60.127 61.111 13.13 4.41 0.00 5.34
1278 4405 9.643652 GTAGATCAAAGAAGCATCGAATTTAAG 57.356 33.333 0.00 0.00 0.00 1.85
1286 4413 4.744137 CCTCAGTAGATCAAAGAAGCATCG 59.256 45.833 0.00 0.00 0.00 3.84
1289 4416 5.247110 AGTTCCTCAGTAGATCAAAGAAGCA 59.753 40.000 0.00 0.00 0.00 3.91
1292 4419 5.780282 TGGAGTTCCTCAGTAGATCAAAGAA 59.220 40.000 0.00 0.00 36.82 2.52
1305 4432 2.027745 GCATTGACTCTGGAGTTCCTCA 60.028 50.000 4.67 0.00 42.66 3.86
1308 4435 1.280421 AGGCATTGACTCTGGAGTTCC 59.720 52.381 4.67 0.00 42.66 3.62
1316 4443 3.837355 ACAAGGAAAAGGCATTGACTCT 58.163 40.909 0.00 0.00 34.03 3.24
1327 4454 2.719798 CGACACAGCAACAAGGAAAAG 58.280 47.619 0.00 0.00 0.00 2.27
1351 4479 3.118884 GGTTCTTGTAGCCGGAGATGTAA 60.119 47.826 5.05 0.00 0.00 2.41
1485 4619 1.447838 GCGTCAATTCCGAGGCAGA 60.448 57.895 5.79 0.00 44.28 4.26
1488 4622 2.125106 AGGCGTCAATTCCGAGGC 60.125 61.111 0.00 2.70 44.17 4.70
1618 4752 1.109920 TGATCGCTGAGGTAGAGGGC 61.110 60.000 0.00 0.00 0.00 5.19
1638 4772 3.435671 CGTTTGGTATTTCTGGAGTGGAC 59.564 47.826 0.00 0.00 0.00 4.02
1663 4797 4.507756 GCTTTCAGCAAAGTAGTTTTTGGG 59.492 41.667 0.00 0.00 41.89 4.12
1871 5007 2.386661 AGGAACCGAAGTACATGCAG 57.613 50.000 0.00 0.00 0.00 4.41
1980 5117 4.943705 TGGATTATGTCTGGCTTGAACTTC 59.056 41.667 0.00 0.00 0.00 3.01
2007 5144 3.703001 ACCATAACTCCAGGTGAAGTG 57.297 47.619 0.00 0.00 33.57 3.16
2236 5373 5.049405 AGCCGTTACAAGAAATCAGTTCAAG 60.049 40.000 0.00 0.00 38.86 3.02
2242 5379 3.751175 TGGAAGCCGTTACAAGAAATCAG 59.249 43.478 0.00 0.00 0.00 2.90
2345 5482 7.221838 GCTTTGCACTTTTGTACAGAACATAAA 59.778 33.333 0.00 0.00 38.10 1.40
2577 5714 0.253044 GCAGAGGCAAGTGGGTATGA 59.747 55.000 0.00 0.00 40.72 2.15
2727 5864 2.187599 AAGCATGCGCGTTGTCTTCC 62.188 55.000 13.01 0.00 45.49 3.46
2737 5874 5.707411 AAGAAAAATCAATAAGCATGCGC 57.293 34.783 13.01 0.00 38.99 6.09
2739 5876 7.732664 ACGAAAAGAAAAATCAATAAGCATGC 58.267 30.769 10.51 10.51 0.00 4.06
3050 9064 4.412199 AGCTAAAATGCTACATAGGGACCA 59.588 41.667 0.00 0.00 42.10 4.02
3051 9065 4.974399 AGCTAAAATGCTACATAGGGACC 58.026 43.478 0.00 0.00 42.10 4.46
3263 9277 5.596361 TCCAACAAAAGCAATTCTTACTCCA 59.404 36.000 0.00 0.00 33.88 3.86
3365 9379 1.338674 TGGTGATGAACGTAAGCCCAG 60.339 52.381 0.00 0.00 45.62 4.45
3368 9382 2.423577 AGTTGGTGATGAACGTAAGCC 58.576 47.619 0.00 0.00 45.62 4.35
3383 9397 5.533154 TGTTGTTTCAATAGTGGGTAGTTGG 59.467 40.000 0.00 0.00 0.00 3.77
3393 9407 9.653287 TTCTCGAGATTATGTTGTTTCAATAGT 57.347 29.630 17.44 0.00 0.00 2.12
3394 9408 9.907576 GTTCTCGAGATTATGTTGTTTCAATAG 57.092 33.333 17.44 0.00 0.00 1.73
3414 9428 7.042051 TGGAAGTGTGAAAGAATAAAGTTCTCG 60.042 37.037 0.00 0.00 0.00 4.04
3448 9468 0.996583 AGTTATTTTGGGGCGGAGGA 59.003 50.000 0.00 0.00 0.00 3.71
3493 9513 3.370978 TCGCTGATTTAGTACAAAGCTGC 59.629 43.478 18.53 18.53 37.21 5.25
3496 9522 4.389077 AGTGTCGCTGATTTAGTACAAAGC 59.611 41.667 0.00 0.00 0.00 3.51
3520 9546 0.611896 ACTCCCTTCGCCCCAAAATG 60.612 55.000 0.00 0.00 0.00 2.32
3532 9564 7.502561 GGTTTGTGAATTAGCATATACTCCCTT 59.497 37.037 0.00 0.00 0.00 3.95
3564 9596 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3567 9599 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3570 9602 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
3594 9941 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
3595 9942 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
3596 9943 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
3597 9944 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
3598 9945 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
3600 9947 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
3601 9948 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
3603 9950 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
3604 9951 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
3605 9952 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3606 9953 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3608 9955 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3609 9956 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3611 9958 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3614 9961 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3615 9962 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3616 9963 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3617 9964 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3619 9966 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3620 9967 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3641 9988 7.415318 CGGATGTACATAGACACACTTTAGAGT 60.415 40.741 8.71 0.00 36.25 3.24
3642 9989 6.913132 CGGATGTACATAGACACACTTTAGAG 59.087 42.308 8.71 0.00 30.52 2.43
3644 9991 6.561614 ACGGATGTACATAGACACACTTTAG 58.438 40.000 8.71 0.00 30.52 1.85
3646 9993 5.401531 ACGGATGTACATAGACACACTTT 57.598 39.130 8.71 0.00 30.52 2.66
3647 9994 6.710597 ATACGGATGTACATAGACACACTT 57.289 37.500 8.71 0.00 32.26 3.16
3648 9995 6.710597 AATACGGATGTACATAGACACACT 57.289 37.500 8.71 0.00 32.26 3.55
3650 9997 8.229253 ACTAAATACGGATGTACATAGACACA 57.771 34.615 8.71 0.00 32.26 3.72
3651 9998 7.806960 GGACTAAATACGGATGTACATAGACAC 59.193 40.741 8.71 0.00 32.26 3.67
3652 9999 7.308169 CGGACTAAATACGGATGTACATAGACA 60.308 40.741 8.71 1.12 32.26 3.41
3653 10000 7.020010 CGGACTAAATACGGATGTACATAGAC 58.980 42.308 8.71 1.53 32.26 2.59
3654 10001 6.712095 ACGGACTAAATACGGATGTACATAGA 59.288 38.462 8.71 0.00 32.26 1.98
3657 10004 5.779529 ACGGACTAAATACGGATGTACAT 57.220 39.130 8.43 8.43 32.26 2.29
3658 10005 6.486320 TGATACGGACTAAATACGGATGTACA 59.514 38.462 0.00 0.00 30.03 2.90
3659 10006 6.902341 TGATACGGACTAAATACGGATGTAC 58.098 40.000 0.00 0.00 30.03 2.90
3660 10007 7.509141 TTGATACGGACTAAATACGGATGTA 57.491 36.000 0.00 0.00 30.03 2.29
3662 10009 7.703298 TTTTGATACGGACTAAATACGGATG 57.297 36.000 0.00 0.00 30.03 3.51
3664 10011 7.719483 AGATTTTGATACGGACTAAATACGGA 58.281 34.615 0.00 0.00 0.00 4.69
3665 10012 7.115947 GGAGATTTTGATACGGACTAAATACGG 59.884 40.741 0.00 0.00 0.00 4.02
3666 10013 7.650504 TGGAGATTTTGATACGGACTAAATACG 59.349 37.037 0.00 0.00 0.00 3.06
3667 10014 8.882415 TGGAGATTTTGATACGGACTAAATAC 57.118 34.615 0.00 0.00 0.00 1.89
3668 10015 9.893634 TTTGGAGATTTTGATACGGACTAAATA 57.106 29.630 0.00 0.00 0.00 1.40
3669 10016 8.801882 TTTGGAGATTTTGATACGGACTAAAT 57.198 30.769 0.00 0.00 0.00 1.40
3670 10017 8.624367 TTTTGGAGATTTTGATACGGACTAAA 57.376 30.769 0.00 0.00 0.00 1.85
3671 10018 8.624367 TTTTTGGAGATTTTGATACGGACTAA 57.376 30.769 0.00 0.00 0.00 2.24
3672 10019 8.098286 TCTTTTTGGAGATTTTGATACGGACTA 58.902 33.333 0.00 0.00 0.00 2.59
3673 10020 6.940298 TCTTTTTGGAGATTTTGATACGGACT 59.060 34.615 0.00 0.00 0.00 3.85
3674 10021 7.021790 GTCTTTTTGGAGATTTTGATACGGAC 58.978 38.462 0.00 0.00 0.00 4.79
3675 10022 6.940298 AGTCTTTTTGGAGATTTTGATACGGA 59.060 34.615 0.00 0.00 0.00 4.69
3676 10023 7.145932 AGTCTTTTTGGAGATTTTGATACGG 57.854 36.000 0.00 0.00 0.00 4.02
3689 10036 9.169592 CCGTTCCTAAATATAAGTCTTTTTGGA 57.830 33.333 0.00 0.00 34.13 3.53
3690 10037 9.169592 TCCGTTCCTAAATATAAGTCTTTTTGG 57.830 33.333 0.00 0.00 0.00 3.28
3692 10039 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3693 10040 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3695 10042 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3696 10043 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3697 10044 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3698 10045 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3699 10046 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3701 10048 9.417561 CATATACTCCCTCCGTTCCTAAATATA 57.582 37.037 0.00 0.00 0.00 0.86
3703 10050 7.243824 ACATATACTCCCTCCGTTCCTAAATA 58.756 38.462 0.00 0.00 0.00 1.40
3704 10051 6.082707 ACATATACTCCCTCCGTTCCTAAAT 58.917 40.000 0.00 0.00 0.00 1.40
3705 10052 5.461327 ACATATACTCCCTCCGTTCCTAAA 58.539 41.667 0.00 0.00 0.00 1.85
3706 10053 5.070823 ACATATACTCCCTCCGTTCCTAA 57.929 43.478 0.00 0.00 0.00 2.69
3707 10054 4.736611 ACATATACTCCCTCCGTTCCTA 57.263 45.455 0.00 0.00 0.00 2.94
3708 10055 3.614568 ACATATACTCCCTCCGTTCCT 57.385 47.619 0.00 0.00 0.00 3.36
3709 10056 5.796424 TTAACATATACTCCCTCCGTTCC 57.204 43.478 0.00 0.00 0.00 3.62
3713 10060 9.162764 CCAATATTTTAACATATACTCCCTCCG 57.837 37.037 0.00 0.00 0.00 4.63
3714 10061 8.957466 GCCAATATTTTAACATATACTCCCTCC 58.043 37.037 0.00 0.00 0.00 4.30
3715 10062 9.740710 AGCCAATATTTTAACATATACTCCCTC 57.259 33.333 0.00 0.00 0.00 4.30
3716 10063 9.520515 CAGCCAATATTTTAACATATACTCCCT 57.479 33.333 0.00 0.00 0.00 4.20
3717 10064 8.244113 GCAGCCAATATTTTAACATATACTCCC 58.756 37.037 0.00 0.00 0.00 4.30
3718 10065 7.962918 CGCAGCCAATATTTTAACATATACTCC 59.037 37.037 0.00 0.00 0.00 3.85
3720 10067 8.391075 ACGCAGCCAATATTTTAACATATACT 57.609 30.769 0.00 0.00 0.00 2.12
3724 10071 7.136119 GCTAACGCAGCCAATATTTTAACATA 58.864 34.615 0.00 0.00 45.23 2.29
3725 10072 5.977129 GCTAACGCAGCCAATATTTTAACAT 59.023 36.000 0.00 0.00 45.23 2.71
3726 10073 5.336744 GCTAACGCAGCCAATATTTTAACA 58.663 37.500 0.00 0.00 45.23 2.41
3727 10074 5.866503 GCTAACGCAGCCAATATTTTAAC 57.133 39.130 0.00 0.00 45.23 2.01
3743 10090 2.683968 TCACCAGCAAGTAAGCTAACG 58.316 47.619 0.00 0.00 44.54 3.18
3770 10117 4.081642 ACTTGAGACTTGGCACGTATATGT 60.082 41.667 0.00 0.00 0.00 2.29
3938 11552 5.122512 TGTGCAGTAGTACTCTTGAGTTC 57.877 43.478 8.66 4.06 0.00 3.01
3945 11559 6.887545 AGAAGTATCTTGTGCAGTAGTACTCT 59.112 38.462 0.00 0.00 29.15 3.24
3947 11561 6.127591 CCAGAAGTATCTTGTGCAGTAGTACT 60.128 42.308 0.00 0.00 32.03 2.73
3951 11565 5.105554 AGTCCAGAAGTATCTTGTGCAGTAG 60.106 44.000 0.00 0.00 32.03 2.57
3957 11571 5.724328 TGCTTAGTCCAGAAGTATCTTGTG 58.276 41.667 0.61 0.61 32.03 3.33
3987 11601 5.353938 ACATTTGCTTATTGGCTGCATTAG 58.646 37.500 0.50 0.00 36.55 1.73
3999 11613 5.125417 GTGGACATGTGGTACATTTGCTTAT 59.875 40.000 1.15 0.00 43.82 1.73
4003 11617 2.556189 TGTGGACATGTGGTACATTTGC 59.444 45.455 1.15 0.00 43.82 3.68
4004 11618 4.844998 TTGTGGACATGTGGTACATTTG 57.155 40.909 1.15 0.00 43.82 2.32
4070 11684 4.023707 ACTTGCTCAGTGCTCATTGTAAAC 60.024 41.667 0.00 0.00 43.37 2.01
4071 11685 4.023792 CACTTGCTCAGTGCTCATTGTAAA 60.024 41.667 3.99 0.00 46.70 2.01
4074 11688 1.878088 CACTTGCTCAGTGCTCATTGT 59.122 47.619 3.99 0.00 46.70 2.71
4113 11728 2.046285 GGGTCAAACAGATGGCCGG 61.046 63.158 0.00 0.00 46.33 6.13
4160 11775 6.017770 CCAAGATAAAACAGACGGTGTAAACA 60.018 38.462 0.00 0.00 39.03 2.83
4170 11785 2.164422 GCCCTGCCAAGATAAAACAGAC 59.836 50.000 0.00 0.00 0.00 3.51
4175 11790 2.726821 CTCAGCCCTGCCAAGATAAAA 58.273 47.619 0.00 0.00 0.00 1.52
4261 11877 2.048597 CCACTGGCGTACGCTTGA 60.049 61.111 36.24 20.76 41.60 3.02
4351 11967 4.717629 CGAGCAGCGACAACCGGA 62.718 66.667 9.46 0.00 44.57 5.14
4393 12009 2.231380 GCCCTCCTTGTCCTTGGGA 61.231 63.158 0.00 0.00 40.23 4.37
4414 12030 1.202818 GGTGTGAAGAGGAAGCTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
4465 12081 1.601166 TCGACGAGAGGAGTTGTTCA 58.399 50.000 0.00 0.00 0.00 3.18
4471 12087 0.677414 GGTCCTTCGACGAGAGGAGT 60.677 60.000 21.48 0.00 40.17 3.85
4828 12446 3.440872 AGAAACAGACTAGCAGTAGGACG 59.559 47.826 0.00 0.00 0.00 4.79
4868 12486 8.784994 TGCAAAACGTCTTATATTTAGGAACAA 58.215 29.630 0.00 0.00 0.00 2.83
4873 12491 8.447833 TGAACTGCAAAACGTCTTATATTTAGG 58.552 33.333 0.00 0.00 0.00 2.69
4880 12498 7.040686 ACCTTATTGAACTGCAAAACGTCTTAT 60.041 33.333 0.00 0.00 40.48 1.73
4927 12546 5.258841 AGAAACAGATGGATGCATTGAGAA 58.741 37.500 0.00 0.00 0.00 2.87
4930 12549 5.748402 AGTAGAAACAGATGGATGCATTGA 58.252 37.500 0.00 0.00 0.00 2.57
4940 12559 8.478877 AGAGGTGGTAATAAGTAGAAACAGATG 58.521 37.037 0.00 0.00 0.00 2.90
4959 12578 7.980099 ACGTCTTATATTTAAGAACAGAGGTGG 59.020 37.037 7.14 0.00 44.12 4.61
4960 12579 8.928270 ACGTCTTATATTTAAGAACAGAGGTG 57.072 34.615 7.14 0.00 44.12 4.00
4992 12611 4.381932 CCCTTGCATCAACCTTATTGAACC 60.382 45.833 0.00 0.00 31.55 3.62
5020 12639 5.716228 ACAGATTGATGCATTGGGAGTTTAA 59.284 36.000 0.00 0.00 0.00 1.52
5061 12680 3.073356 ACACTTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
5062 12681 3.418047 ACACTTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
5063 12682 4.324267 AGACACTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
5064 12683 4.994852 TGAGACACTTATTTTTGGACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
5065 12684 4.963373 TGAGACACTTATTTTTGGACGGA 58.037 39.130 0.00 0.00 0.00 4.69
5066 12685 5.238650 AGTTGAGACACTTATTTTTGGACGG 59.761 40.000 0.00 0.00 0.00 4.79
5067 12686 6.300354 AGTTGAGACACTTATTTTTGGACG 57.700 37.500 0.00 0.00 0.00 4.79
5068 12687 7.973944 ACAAAGTTGAGACACTTATTTTTGGAC 59.026 33.333 0.00 0.00 35.87 4.02
5069 12688 8.062065 ACAAAGTTGAGACACTTATTTTTGGA 57.938 30.769 0.00 0.00 35.87 3.53
5070 12689 9.233232 GTACAAAGTTGAGACACTTATTTTTGG 57.767 33.333 0.00 0.00 35.87 3.28
5071 12690 9.233232 GGTACAAAGTTGAGACACTTATTTTTG 57.767 33.333 0.00 0.00 35.87 2.44
5072 12691 8.962679 TGGTACAAAGTTGAGACACTTATTTTT 58.037 29.630 0.00 0.00 35.87 1.94
5073 12692 8.403236 GTGGTACAAAGTTGAGACACTTATTTT 58.597 33.333 0.00 0.00 44.16 1.82
5074 12693 7.012989 GGTGGTACAAAGTTGAGACACTTATTT 59.987 37.037 0.00 0.00 44.16 1.40
5075 12694 6.485648 GGTGGTACAAAGTTGAGACACTTATT 59.514 38.462 0.00 0.00 44.16 1.40
5076 12695 5.995897 GGTGGTACAAAGTTGAGACACTTAT 59.004 40.000 0.00 0.00 44.16 1.73
5077 12696 5.129815 AGGTGGTACAAAGTTGAGACACTTA 59.870 40.000 0.00 0.00 44.16 2.24
5078 12697 4.080526 AGGTGGTACAAAGTTGAGACACTT 60.081 41.667 0.00 0.00 44.16 3.16
5079 12698 3.454812 AGGTGGTACAAAGTTGAGACACT 59.545 43.478 0.00 0.00 44.16 3.55
5080 12699 3.805207 AGGTGGTACAAAGTTGAGACAC 58.195 45.455 0.00 3.70 44.16 3.67
5081 12700 3.181458 GGAGGTGGTACAAAGTTGAGACA 60.181 47.826 0.00 0.00 44.16 3.41
5082 12701 3.400255 GGAGGTGGTACAAAGTTGAGAC 58.600 50.000 0.00 0.00 44.16 3.36
5083 12702 2.036733 CGGAGGTGGTACAAAGTTGAGA 59.963 50.000 0.00 0.00 44.16 3.27
5084 12703 2.224209 ACGGAGGTGGTACAAAGTTGAG 60.224 50.000 0.00 0.00 44.16 3.02
5085 12704 1.764134 ACGGAGGTGGTACAAAGTTGA 59.236 47.619 0.00 0.00 44.16 3.18
5086 12705 2.140717 GACGGAGGTGGTACAAAGTTG 58.859 52.381 0.00 0.00 44.16 3.16
5087 12706 1.071228 GGACGGAGGTGGTACAAAGTT 59.929 52.381 0.00 0.00 44.16 2.66
5088 12707 0.683412 GGACGGAGGTGGTACAAAGT 59.317 55.000 0.00 0.00 44.16 2.66
5089 12708 0.682852 TGGACGGAGGTGGTACAAAG 59.317 55.000 0.00 0.00 44.16 2.77
5090 12709 1.129917 TTGGACGGAGGTGGTACAAA 58.870 50.000 0.00 0.00 44.16 2.83
5091 12710 1.129917 TTTGGACGGAGGTGGTACAA 58.870 50.000 0.00 0.00 44.16 2.41
5092 12711 1.129917 TTTTGGACGGAGGTGGTACA 58.870 50.000 0.00 0.00 0.00 2.90
5093 12712 2.259266 TTTTTGGACGGAGGTGGTAC 57.741 50.000 0.00 0.00 0.00 3.34
5094 12713 4.041938 ACTTATTTTTGGACGGAGGTGGTA 59.958 41.667 0.00 0.00 0.00 3.25
5095 12714 3.181437 ACTTATTTTTGGACGGAGGTGGT 60.181 43.478 0.00 0.00 0.00 4.16
5096 12715 3.190535 CACTTATTTTTGGACGGAGGTGG 59.809 47.826 0.00 0.00 0.00 4.61
5097 12716 3.818773 ACACTTATTTTTGGACGGAGGTG 59.181 43.478 0.00 0.00 0.00 4.00
5098 12717 4.070009 GACACTTATTTTTGGACGGAGGT 58.930 43.478 0.00 0.00 0.00 3.85
5099 12718 4.324267 AGACACTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
5100 12719 4.994852 TGAGACACTTATTTTTGGACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
5101 12720 4.963373 TGAGACACTTATTTTTGGACGGA 58.037 39.130 0.00 0.00 0.00 4.69
5102 12721 5.238650 AGTTGAGACACTTATTTTTGGACGG 59.761 40.000 0.00 0.00 0.00 4.79
5103 12722 6.300354 AGTTGAGACACTTATTTTTGGACG 57.700 37.500 0.00 0.00 0.00 4.79
5104 12723 7.973944 ACAAAGTTGAGACACTTATTTTTGGAC 59.026 33.333 0.00 0.00 35.87 4.02
5105 12724 8.062065 ACAAAGTTGAGACACTTATTTTTGGA 57.938 30.769 0.00 0.00 35.87 3.53
5106 12725 9.233232 GTACAAAGTTGAGACACTTATTTTTGG 57.767 33.333 0.00 0.00 35.87 3.28
5107 12726 9.233232 GGTACAAAGTTGAGACACTTATTTTTG 57.767 33.333 0.00 0.00 35.87 2.44
5108 12727 8.962679 TGGTACAAAGTTGAGACACTTATTTTT 58.037 29.630 0.00 0.00 35.87 1.94
5109 12728 8.403236 GTGGTACAAAGTTGAGACACTTATTTT 58.597 33.333 0.00 0.00 44.16 1.82
5110 12729 7.012989 GGTGGTACAAAGTTGAGACACTTATTT 59.987 37.037 0.00 0.00 44.16 1.40
5111 12730 6.485648 GGTGGTACAAAGTTGAGACACTTATT 59.514 38.462 0.00 0.00 44.16 1.40
5112 12731 5.995897 GGTGGTACAAAGTTGAGACACTTAT 59.004 40.000 0.00 0.00 44.16 1.73
5113 12732 5.129815 AGGTGGTACAAAGTTGAGACACTTA 59.870 40.000 0.00 0.00 44.16 2.24
5114 12733 4.080526 AGGTGGTACAAAGTTGAGACACTT 60.081 41.667 0.00 0.00 44.16 3.16
5115 12734 3.454812 AGGTGGTACAAAGTTGAGACACT 59.545 43.478 0.00 0.00 44.16 3.55
5116 12735 3.805207 AGGTGGTACAAAGTTGAGACAC 58.195 45.455 0.00 3.70 44.16 3.67
5117 12736 4.497291 AAGGTGGTACAAAGTTGAGACA 57.503 40.909 0.00 0.00 44.16 3.41
5118 12737 5.124936 ACAAAAGGTGGTACAAAGTTGAGAC 59.875 40.000 0.00 0.00 44.16 3.36
5119 12738 5.258051 ACAAAAGGTGGTACAAAGTTGAGA 58.742 37.500 0.00 0.00 44.16 3.27
5120 12739 5.576447 ACAAAAGGTGGTACAAAGTTGAG 57.424 39.130 0.00 0.00 44.16 3.02
5121 12740 8.749026 TTATACAAAAGGTGGTACAAAGTTGA 57.251 30.769 0.00 0.00 44.16 3.18
5122 12741 9.804758 TTTTATACAAAAGGTGGTACAAAGTTG 57.195 29.630 0.00 0.00 44.16 3.16
5153 12772 9.569122 TCCAAAAATAAGTGTCTTAAGCTTAGT 57.431 29.630 6.24 0.00 0.00 2.24
5154 12773 9.827411 GTCCAAAAATAAGTGTCTTAAGCTTAG 57.173 33.333 6.24 1.77 0.00 2.18
5155 12774 8.500773 CGTCCAAAAATAAGTGTCTTAAGCTTA 58.499 33.333 0.86 0.86 0.00 3.09
5156 12775 7.360361 CGTCCAAAAATAAGTGTCTTAAGCTT 58.640 34.615 3.48 3.48 0.00 3.74
5157 12776 6.072673 CCGTCCAAAAATAAGTGTCTTAAGCT 60.073 38.462 0.00 0.00 0.00 3.74
5158 12777 6.072893 TCCGTCCAAAAATAAGTGTCTTAAGC 60.073 38.462 0.00 0.00 0.00 3.09
5159 12778 7.360946 CCTCCGTCCAAAAATAAGTGTCTTAAG 60.361 40.741 0.00 0.00 0.00 1.85
5160 12779 6.428771 CCTCCGTCCAAAAATAAGTGTCTTAA 59.571 38.462 0.00 0.00 0.00 1.85
5161 12780 5.935789 CCTCCGTCCAAAAATAAGTGTCTTA 59.064 40.000 0.00 0.00 0.00 2.10
5162 12781 4.760204 CCTCCGTCCAAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
5163 12782 4.324267 CCTCCGTCCAAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
5164 12783 3.439129 CCCTCCGTCCAAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
5165 12784 3.073356 TCCCTCCGTCCAAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
5166 12785 3.681593 TCCCTCCGTCCAAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
5167 12786 3.329814 ACTCCCTCCGTCCAAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
5168 12787 3.951663 ACTCCCTCCGTCCAAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
5169 12788 4.323715 GGTACTCCCTCCGTCCAAAAATAA 60.324 45.833 0.00 0.00 0.00 1.40
5170 12789 3.198417 GGTACTCCCTCCGTCCAAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
5171 12790 2.026542 GGTACTCCCTCCGTCCAAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
5172 12791 1.348696 GGTACTCCCTCCGTCCAAAAA 59.651 52.381 0.00 0.00 0.00 1.94
5173 12792 0.978907 GGTACTCCCTCCGTCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5174 12793 0.115745 AGGTACTCCCTCCGTCCAAA 59.884 55.000 0.00 0.00 40.71 3.28
5175 12794 1.778981 AGGTACTCCCTCCGTCCAA 59.221 57.895 0.00 0.00 40.71 3.53
5176 12795 3.516780 AGGTACTCCCTCCGTCCA 58.483 61.111 0.00 0.00 40.71 4.02
5184 12803 9.984190 CTTATATTTAAGAACAGAGGTACTCCC 57.016 37.037 0.00 0.00 46.12 4.30
5190 12809 9.939802 AAACGTCTTATATTTAAGAACAGAGGT 57.060 29.630 7.14 0.00 44.12 3.85
5214 12833 6.202570 GCATCAACCTTATTGAACTGCAAAAA 59.797 34.615 9.32 0.00 40.48 1.94
5228 12847 1.077005 AGGGCCTTTGCATCAACCTTA 59.923 47.619 0.00 0.00 40.13 2.69
5236 12855 2.621668 GGAGTTTAGAGGGCCTTTGCAT 60.622 50.000 7.89 0.00 40.13 3.96
5242 12861 1.566231 CATTGGGAGTTTAGAGGGCCT 59.434 52.381 5.25 5.25 0.00 5.19
5280 12899 6.879458 AGGCAGTTTCGAAATCTATAACTTGT 59.121 34.615 14.69 0.00 0.00 3.16
5296 12915 1.683385 ACTTGGAAGCAAGGCAGTTTC 59.317 47.619 0.00 0.00 36.55 2.78
5313 12936 1.543429 CGCCTCTTCTGGTTGGAACTT 60.543 52.381 0.00 0.00 0.00 2.66
5323 12946 1.342819 AGCCTATTAGCGCCTCTTCTG 59.657 52.381 2.29 0.00 38.01 3.02
5348 12971 1.095600 CGACAGTGGTAGAGCTGCTA 58.904 55.000 0.15 0.00 36.26 3.49
5385 13008 3.615155 TGTGTGTTTCTCATGTTGGTCA 58.385 40.909 0.00 0.00 0.00 4.02
5462 13093 5.105554 TGCTGTGTGGAAAACTATTTTGTGT 60.106 36.000 0.00 0.00 31.94 3.72
5527 13158 5.739959 AGCTTAGGAAAGGAGAATCTGTTC 58.260 41.667 0.00 0.00 32.98 3.18
5573 13204 4.279420 GCATGGGATGATAGAAGTTTTCCC 59.721 45.833 0.00 0.00 42.64 3.97
5574 13205 4.889409 TGCATGGGATGATAGAAGTTTTCC 59.111 41.667 0.00 0.00 0.00 3.13
5590 13221 3.428413 TCAGATACATGGATGCATGGG 57.572 47.619 28.08 13.49 36.91 4.00
5591 13222 4.395625 AGTTCAGATACATGGATGCATGG 58.604 43.478 28.08 12.19 36.91 3.66
5592 13223 4.454847 GGAGTTCAGATACATGGATGCATG 59.545 45.833 24.00 24.00 38.46 4.06
5593 13224 4.350225 AGGAGTTCAGATACATGGATGCAT 59.650 41.667 0.00 0.00 0.00 3.96
5594 13225 3.713248 AGGAGTTCAGATACATGGATGCA 59.287 43.478 0.00 0.00 0.00 3.96
5595 13226 4.348863 AGGAGTTCAGATACATGGATGC 57.651 45.455 0.00 0.00 0.00 3.91
5596 13227 6.410942 TGTAGGAGTTCAGATACATGGATG 57.589 41.667 0.00 0.00 0.00 3.51
5597 13228 5.541868 CCTGTAGGAGTTCAGATACATGGAT 59.458 44.000 0.00 0.00 37.39 3.41
5608 13239 0.685097 GGTGTGCCTGTAGGAGTTCA 59.315 55.000 1.17 0.00 37.39 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.