Multiple sequence alignment - TraesCS4D01G214500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G214500 chr4D 100.000 2732 0 0 770 3501 367792832 367795563 0.000000e+00 5046.0
1 TraesCS4D01G214500 chr4D 100.000 445 0 0 1 445 367792063 367792507 0.000000e+00 822.0
2 TraesCS4D01G214500 chr4D 97.906 191 4 0 1 191 367787269 367787459 7.240000e-87 331.0
3 TraesCS4D01G214500 chr4A 92.179 2148 86 33 777 2901 97308439 97306351 0.000000e+00 2961.0
4 TraesCS4D01G214500 chr4A 92.827 237 12 3 190 421 97308783 97308547 4.330000e-89 339.0
5 TraesCS4D01G214500 chr4A 92.000 225 16 2 2903 3127 97306187 97305965 7.290000e-82 315.0
6 TraesCS4D01G214500 chr4A 92.000 150 11 1 3130 3278 97305920 97305771 3.540000e-50 209.0
7 TraesCS4D01G214500 chr4B 92.577 1226 50 25 770 1985 453079686 453080880 0.000000e+00 1722.0
8 TraesCS4D01G214500 chr4B 94.336 565 29 2 1996 2557 453081028 453081592 0.000000e+00 863.0
9 TraesCS4D01G214500 chr4B 95.146 103 5 0 323 425 453079493 453079595 2.800000e-36 163.0
10 TraesCS4D01G214500 chr4B 97.590 83 2 0 215 297 453079415 453079497 3.640000e-30 143.0
11 TraesCS4D01G214500 chr6D 96.109 257 10 0 2193 2449 363180569 363180825 1.500000e-113 420.0
12 TraesCS4D01G214500 chr6D 84.295 312 38 9 3187 3493 424537695 424538000 9.500000e-76 294.0
13 TraesCS4D01G214500 chr7B 86.622 299 40 0 1465 1763 150028720 150028422 7.240000e-87 331.0
14 TraesCS4D01G214500 chr7B 78.764 259 47 4 1081 1335 150188482 150188228 2.160000e-37 167.0
15 TraesCS4D01G214500 chr7B 92.308 78 6 0 1873 1950 150068977 150068900 1.030000e-20 111.0
16 TraesCS4D01G214500 chr7B 89.474 76 8 0 1875 1950 150028338 150028263 2.880000e-16 97.1
17 TraesCS4D01G214500 chr7D 85.185 297 44 0 1465 1761 182326338 182326042 4.390000e-79 305.0
18 TraesCS4D01G214500 chr7D 94.271 192 10 1 1 191 556873566 556873757 3.420000e-75 292.0
19 TraesCS4D01G214500 chr7D 93.229 192 12 1 1 191 556878300 556878491 7.400000e-72 281.0
20 TraesCS4D01G214500 chr7D 80.147 272 51 3 3231 3501 563901890 563902159 2.130000e-47 200.0
21 TraesCS4D01G214500 chr7D 79.377 257 45 4 1083 1335 181976264 181976012 1.290000e-39 174.0
22 TraesCS4D01G214500 chr7D 76.524 328 67 10 1026 1345 53640953 53640628 1.670000e-38 171.0
23 TraesCS4D01G214500 chr7D 92.308 78 6 0 1873 1950 181845555 181845478 1.030000e-20 111.0
24 TraesCS4D01G214500 chr7D 90.667 75 7 0 1875 1949 182333409 182333335 2.220000e-17 100.0
25 TraesCS4D01G214500 chr2D 94.764 191 10 0 1 191 29539119 29538929 7.350000e-77 298.0
26 TraesCS4D01G214500 chr2D 94.764 191 10 0 1 191 635445267 635445077 7.350000e-77 298.0
27 TraesCS4D01G214500 chr2D 94.271 192 11 0 1 192 29534330 29534139 9.500000e-76 294.0
28 TraesCS4D01G214500 chr2D 94.241 191 11 0 1 191 635450060 635449870 3.420000e-75 292.0
29 TraesCS4D01G214500 chr2D 81.203 266 48 2 3231 3495 80447538 80447802 2.740000e-51 213.0
30 TraesCS4D01G214500 chr7A 84.175 297 47 0 1465 1761 189434377 189434673 4.420000e-74 289.0
31 TraesCS4D01G214500 chr7A 89.005 191 21 0 1 191 694117952 694118142 1.620000e-58 237.0
32 TraesCS4D01G214500 chr7A 91.026 78 7 0 1873 1950 190016176 190016253 4.780000e-19 106.0
33 TraesCS4D01G214500 chr7A 90.667 75 7 0 1875 1949 189338333 189338407 2.220000e-17 100.0
34 TraesCS4D01G214500 chr7A 87.179 78 10 0 1876 1953 57706192 57706115 4.810000e-14 89.8
35 TraesCS4D01G214500 chr1A 91.623 191 16 0 1 191 5149701 5149511 7.450000e-67 265.0
36 TraesCS4D01G214500 chr1A 79.927 274 51 2 3223 3495 521879240 521879510 7.670000e-47 198.0
37 TraesCS4D01G214500 chr3B 84.291 261 39 2 3236 3495 672850659 672850400 1.610000e-63 254.0
38 TraesCS4D01G214500 chr3B 80.505 277 40 12 3230 3501 662516698 662516431 2.130000e-47 200.0
39 TraesCS4D01G214500 chr3D 81.387 274 49 2 3229 3501 306112584 306112312 4.550000e-54 222.0
40 TraesCS4D01G214500 chr5D 81.343 268 46 3 3231 3495 539654738 539655004 7.610000e-52 215.0
41 TraesCS4D01G214500 chr2B 80.935 278 42 9 3229 3501 651367510 651367239 3.540000e-50 209.0
42 TraesCS4D01G214500 chr2B 91.667 48 4 0 2881 2928 50027042 50027089 2.260000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G214500 chr4D 367792063 367795563 3500 False 2934.00 5046 100.00000 1 3501 2 chr4D.!!$F2 3500
1 TraesCS4D01G214500 chr4A 97305771 97308783 3012 True 956.00 2961 92.25150 190 3278 4 chr4A.!!$R1 3088
2 TraesCS4D01G214500 chr4B 453079415 453081592 2177 False 722.75 1722 94.91225 215 2557 4 chr4B.!!$F1 2342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.389817 TTGCGGATCAGGAGAACACG 60.390 55.000 0.00 0.00 0.00 4.49 F
62 63 0.454600 GCGGATCAGGAGAACACGTA 59.545 55.000 0.00 0.00 0.00 3.57 F
114 115 1.011019 CGTCCTAGCTACTCGCACG 60.011 63.158 0.00 0.00 42.61 5.34 F
1954 1980 1.066716 TGTCCAATGCCAGGTACGTAC 60.067 52.381 17.56 17.56 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1718 0.692419 AGGAGTTGATGCCCTCGGAT 60.692 55.000 0.00 0.0 0.00 4.18 R
1858 1884 1.315690 CCTGCTCCATCGAAATGCAT 58.684 50.000 0.00 0.0 33.02 3.96 R
1973 1999 2.111384 TCAGATTCTGGAGTACCTGGC 58.889 52.381 13.59 0.0 36.08 4.85 R
3196 3594 0.250513 GTGGGTCAGGATGGTCAGAC 59.749 60.000 0.00 0.0 36.16 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.491152 CCGATTTTGCTGCGCCAT 59.509 55.556 4.18 0.00 0.00 4.40
18 19 1.587088 CCGATTTTGCTGCGCCATC 60.587 57.895 4.18 0.00 0.00 3.51
19 20 1.587088 CGATTTTGCTGCGCCATCC 60.587 57.895 4.18 0.00 0.00 3.51
20 21 1.227060 GATTTTGCTGCGCCATCCC 60.227 57.895 4.18 0.00 0.00 3.85
21 22 1.947597 GATTTTGCTGCGCCATCCCA 61.948 55.000 4.18 0.00 0.00 4.37
22 23 2.229690 ATTTTGCTGCGCCATCCCAC 62.230 55.000 4.18 0.00 0.00 4.61
23 24 4.657408 TTGCTGCGCCATCCCACA 62.657 61.111 4.18 0.00 0.00 4.17
30 31 4.101448 GCCATCCCACAGCCTCGT 62.101 66.667 0.00 0.00 0.00 4.18
31 32 2.187946 CCATCCCACAGCCTCGTC 59.812 66.667 0.00 0.00 0.00 4.20
32 33 2.362369 CCATCCCACAGCCTCGTCT 61.362 63.158 0.00 0.00 0.00 4.18
33 34 1.142748 CATCCCACAGCCTCGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
34 35 1.305297 ATCCCACAGCCTCGTCTCA 60.305 57.895 0.00 0.00 0.00 3.27
35 36 0.689080 ATCCCACAGCCTCGTCTCAT 60.689 55.000 0.00 0.00 0.00 2.90
36 37 1.153489 CCCACAGCCTCGTCTCATG 60.153 63.158 0.00 0.00 0.00 3.07
37 38 1.153489 CCACAGCCTCGTCTCATGG 60.153 63.158 0.00 0.00 0.00 3.66
38 39 1.812922 CACAGCCTCGTCTCATGGC 60.813 63.158 0.00 0.00 46.42 4.40
41 42 4.625800 GCCTCGTCTCATGGCTTT 57.374 55.556 0.00 0.00 43.05 3.51
42 43 2.859992 GCCTCGTCTCATGGCTTTT 58.140 52.632 0.00 0.00 43.05 2.27
43 44 0.449388 GCCTCGTCTCATGGCTTTTG 59.551 55.000 0.00 0.00 43.05 2.44
44 45 0.449388 CCTCGTCTCATGGCTTTTGC 59.551 55.000 0.00 0.00 46.64 3.68
55 56 3.159298 GCTTTTGCGGATCAGGAGA 57.841 52.632 0.00 0.00 34.86 3.71
56 57 1.453155 GCTTTTGCGGATCAGGAGAA 58.547 50.000 0.00 0.00 34.86 2.87
57 58 1.131315 GCTTTTGCGGATCAGGAGAAC 59.869 52.381 0.00 0.00 34.86 3.01
58 59 2.426522 CTTTTGCGGATCAGGAGAACA 58.573 47.619 0.00 0.00 0.00 3.18
59 60 1.808411 TTTGCGGATCAGGAGAACAC 58.192 50.000 0.00 0.00 0.00 3.32
60 61 0.389817 TTGCGGATCAGGAGAACACG 60.390 55.000 0.00 0.00 0.00 4.49
61 62 1.215647 GCGGATCAGGAGAACACGT 59.784 57.895 0.00 0.00 0.00 4.49
62 63 0.454600 GCGGATCAGGAGAACACGTA 59.545 55.000 0.00 0.00 0.00 3.57
63 64 1.135199 GCGGATCAGGAGAACACGTAA 60.135 52.381 0.00 0.00 0.00 3.18
64 65 2.673043 GCGGATCAGGAGAACACGTAAA 60.673 50.000 0.00 0.00 0.00 2.01
65 66 3.581755 CGGATCAGGAGAACACGTAAAA 58.418 45.455 0.00 0.00 0.00 1.52
66 67 3.367025 CGGATCAGGAGAACACGTAAAAC 59.633 47.826 0.00 0.00 0.00 2.43
83 84 2.202479 CGCGAGATCGTGTGCAGA 60.202 61.111 0.00 0.00 44.02 4.26
84 85 2.220224 CGCGAGATCGTGTGCAGAG 61.220 63.158 0.00 0.00 44.02 3.35
85 86 1.153939 GCGAGATCGTGTGCAGAGT 60.154 57.895 3.94 0.00 42.22 3.24
86 87 1.409227 GCGAGATCGTGTGCAGAGTG 61.409 60.000 3.94 0.00 42.22 3.51
87 88 1.409227 CGAGATCGTGTGCAGAGTGC 61.409 60.000 0.00 0.00 38.06 4.40
88 89 3.978346 CGAGATCGTGTGCAGAGTGCA 62.978 57.143 0.00 0.00 42.21 4.57
106 107 3.524606 GCACGCCCGTCCTAGCTA 61.525 66.667 0.00 0.00 0.00 3.32
107 108 2.412112 CACGCCCGTCCTAGCTAC 59.588 66.667 0.00 0.00 0.00 3.58
108 109 2.119655 CACGCCCGTCCTAGCTACT 61.120 63.158 0.00 0.00 0.00 2.57
109 110 1.823041 ACGCCCGTCCTAGCTACTC 60.823 63.158 0.00 0.00 0.00 2.59
110 111 2.894565 CGCCCGTCCTAGCTACTCG 61.895 68.421 0.00 0.00 0.00 4.18
111 112 3.032339 CCCGTCCTAGCTACTCGC 58.968 66.667 0.00 0.00 39.57 5.03
112 113 1.822613 CCCGTCCTAGCTACTCGCA 60.823 63.158 0.00 0.00 42.61 5.10
113 114 1.355916 CCGTCCTAGCTACTCGCAC 59.644 63.158 0.00 0.00 42.61 5.34
114 115 1.011019 CGTCCTAGCTACTCGCACG 60.011 63.158 0.00 0.00 42.61 5.34
115 116 1.298488 GTCCTAGCTACTCGCACGC 60.298 63.158 0.00 0.00 42.61 5.34
116 117 2.352457 CCTAGCTACTCGCACGCG 60.352 66.667 3.53 3.53 42.61 6.01
117 118 3.019545 CTAGCTACTCGCACGCGC 61.020 66.667 5.73 0.00 42.61 6.86
118 119 4.547905 TAGCTACTCGCACGCGCC 62.548 66.667 5.73 0.00 42.61 6.53
122 123 4.429212 TACTCGCACGCGCCACAT 62.429 61.111 5.73 0.00 39.59 3.21
141 142 2.791383 TGCGGCCATGCATTATTAAC 57.209 45.000 2.24 0.00 40.62 2.01
142 143 2.027385 TGCGGCCATGCATTATTAACA 58.973 42.857 2.24 0.00 40.62 2.41
143 144 2.034432 TGCGGCCATGCATTATTAACAG 59.966 45.455 2.24 0.00 40.62 3.16
144 145 2.293122 GCGGCCATGCATTATTAACAGA 59.707 45.455 2.24 0.00 34.15 3.41
145 146 3.243367 GCGGCCATGCATTATTAACAGAA 60.243 43.478 2.24 0.00 34.15 3.02
146 147 4.736168 GCGGCCATGCATTATTAACAGAAA 60.736 41.667 2.24 0.00 34.15 2.52
147 148 5.347342 CGGCCATGCATTATTAACAGAAAA 58.653 37.500 2.24 0.00 0.00 2.29
148 149 5.231991 CGGCCATGCATTATTAACAGAAAAC 59.768 40.000 2.24 0.00 0.00 2.43
149 150 6.340522 GGCCATGCATTATTAACAGAAAACT 58.659 36.000 0.00 0.00 0.00 2.66
150 151 7.488322 GGCCATGCATTATTAACAGAAAACTA 58.512 34.615 0.00 0.00 0.00 2.24
151 152 7.978975 GGCCATGCATTATTAACAGAAAACTAA 59.021 33.333 0.00 0.00 0.00 2.24
152 153 9.364989 GCCATGCATTATTAACAGAAAACTAAA 57.635 29.630 0.00 0.00 0.00 1.85
163 164 7.949690 AACAGAAAACTAAACTAACCTTGGT 57.050 32.000 0.00 0.00 0.00 3.67
164 165 7.329588 ACAGAAAACTAAACTAACCTTGGTG 57.670 36.000 0.00 0.00 0.00 4.17
165 166 7.114095 ACAGAAAACTAAACTAACCTTGGTGA 58.886 34.615 0.00 0.00 0.00 4.02
166 167 7.066645 ACAGAAAACTAAACTAACCTTGGTGAC 59.933 37.037 0.00 0.00 0.00 3.67
167 168 7.066525 CAGAAAACTAAACTAACCTTGGTGACA 59.933 37.037 0.00 0.00 39.83 3.58
182 183 5.482163 TGGTGACAACAGAGATTACATGA 57.518 39.130 0.00 0.00 37.44 3.07
183 184 5.863965 TGGTGACAACAGAGATTACATGAA 58.136 37.500 0.00 0.00 37.44 2.57
184 185 5.934043 TGGTGACAACAGAGATTACATGAAG 59.066 40.000 0.00 0.00 37.44 3.02
185 186 5.163814 GGTGACAACAGAGATTACATGAAGC 60.164 44.000 0.00 0.00 0.00 3.86
186 187 5.641209 GTGACAACAGAGATTACATGAAGCT 59.359 40.000 0.00 0.00 36.16 3.74
187 188 6.813649 GTGACAACAGAGATTACATGAAGCTA 59.186 38.462 0.00 0.00 32.64 3.32
188 189 7.331934 GTGACAACAGAGATTACATGAAGCTAA 59.668 37.037 0.00 0.00 32.64 3.09
211 212 2.018727 GATGCATTGCCCATTCCGCA 62.019 55.000 6.12 0.00 0.00 5.69
280 284 1.067354 CACCCATTTTGCAGCCTTCTC 60.067 52.381 0.00 0.00 0.00 2.87
353 357 5.508153 AGTCGTAACTGATAGCCTAATGCTG 60.508 44.000 0.00 0.00 42.28 4.41
387 391 7.797121 ATTTTGGTCTTGTCAATTTCCCTAT 57.203 32.000 0.00 0.00 0.00 2.57
419 423 1.250328 TTGCTGCTGAGGTGATTTGG 58.750 50.000 0.00 0.00 0.00 3.28
425 434 2.639347 TGCTGAGGTGATTTGGAAGAGA 59.361 45.455 0.00 0.00 0.00 3.10
426 435 3.269178 GCTGAGGTGATTTGGAAGAGAG 58.731 50.000 0.00 0.00 0.00 3.20
427 436 3.055530 GCTGAGGTGATTTGGAAGAGAGA 60.056 47.826 0.00 0.00 0.00 3.10
428 437 4.757594 CTGAGGTGATTTGGAAGAGAGAG 58.242 47.826 0.00 0.00 0.00 3.20
430 439 4.465660 TGAGGTGATTTGGAAGAGAGAGAG 59.534 45.833 0.00 0.00 0.00 3.20
432 441 4.711355 AGGTGATTTGGAAGAGAGAGAGAG 59.289 45.833 0.00 0.00 0.00 3.20
434 443 4.029520 TGATTTGGAAGAGAGAGAGAGGG 58.970 47.826 0.00 0.00 0.00 4.30
435 444 3.835478 TTTGGAAGAGAGAGAGAGGGA 57.165 47.619 0.00 0.00 0.00 4.20
436 445 3.380471 TTGGAAGAGAGAGAGAGGGAG 57.620 52.381 0.00 0.00 0.00 4.30
437 446 2.567862 TGGAAGAGAGAGAGAGGGAGA 58.432 52.381 0.00 0.00 0.00 3.71
438 447 2.509548 TGGAAGAGAGAGAGAGGGAGAG 59.490 54.545 0.00 0.00 0.00 3.20
439 448 2.777692 GGAAGAGAGAGAGAGGGAGAGA 59.222 54.545 0.00 0.00 0.00 3.10
440 449 3.181450 GGAAGAGAGAGAGAGGGAGAGAG 60.181 56.522 0.00 0.00 0.00 3.20
441 450 3.421394 AGAGAGAGAGAGGGAGAGAGA 57.579 52.381 0.00 0.00 0.00 3.10
443 452 3.051803 AGAGAGAGAGAGGGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
444 453 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
805 814 1.550072 GCCCAACCACACTGCATTAAT 59.450 47.619 0.00 0.00 0.00 1.40
813 822 2.746904 CACACTGCATTAATCGGGAACA 59.253 45.455 0.00 0.00 0.00 3.18
970 979 2.130272 TAACACTGGCACCAACAACA 57.870 45.000 0.00 0.00 0.00 3.33
1332 1346 2.704616 GACCTCTCGCTCGTCTCG 59.295 66.667 0.00 0.00 0.00 4.04
1411 1425 2.120232 CTAGGACAGCGCATAGAAACG 58.880 52.381 11.47 0.00 0.00 3.60
1438 1453 1.573829 GAACTTGATTGCCGCCGTCA 61.574 55.000 0.00 0.00 0.00 4.35
1481 1496 1.884075 ATGCAGGTGACGAGGCGTTA 61.884 55.000 0.00 0.00 41.37 3.18
1703 1718 1.449423 CAACATGGGATCGGCGTCA 60.449 57.895 6.85 2.03 0.00 4.35
1791 1813 7.652105 GTGATATGAAGCATGCATCAAATCTTT 59.348 33.333 27.40 13.64 34.81 2.52
1807 1829 7.230747 TCAAATCTTTATCTCCAACTCCAACA 58.769 34.615 0.00 0.00 0.00 3.33
1817 1839 1.394917 CAACTCCAACACGCTCTATGC 59.605 52.381 0.00 0.00 38.57 3.14
1858 1884 5.976534 CGTTTTCCACATGTTGAGAATTTGA 59.023 36.000 6.23 0.00 0.00 2.69
1870 1896 6.528774 TGTTGAGAATTTGATGCATTTCGATG 59.471 34.615 0.00 0.00 0.00 3.84
1954 1980 1.066716 TGTCCAATGCCAGGTACGTAC 60.067 52.381 17.56 17.56 0.00 3.67
1956 1982 1.206132 TCCAATGCCAGGTACGTACAG 59.794 52.381 26.02 17.33 0.00 2.74
1958 1984 2.166870 CCAATGCCAGGTACGTACAGTA 59.833 50.000 26.02 14.12 0.00 2.74
1959 1985 3.444916 CAATGCCAGGTACGTACAGTAG 58.555 50.000 26.02 12.84 35.72 2.57
1960 1986 2.205022 TGCCAGGTACGTACAGTAGT 57.795 50.000 26.02 3.29 35.72 2.73
1961 1987 3.348647 TGCCAGGTACGTACAGTAGTA 57.651 47.619 26.02 9.11 35.72 1.82
1970 1996 8.239314 CAGGTACGTACAGTAGTATTTTTGAGA 58.761 37.037 26.02 0.00 35.72 3.27
1985 2011 1.951209 TGAGAATGCCAGGTACTCCA 58.049 50.000 0.00 0.00 34.60 3.86
1986 2012 1.833630 TGAGAATGCCAGGTACTCCAG 59.166 52.381 0.00 0.00 34.60 3.86
1987 2013 2.111384 GAGAATGCCAGGTACTCCAGA 58.889 52.381 0.00 0.00 34.60 3.86
1988 2014 2.501723 GAGAATGCCAGGTACTCCAGAA 59.498 50.000 0.00 0.00 34.60 3.02
1989 2015 3.118531 AGAATGCCAGGTACTCCAGAAT 58.881 45.455 0.00 0.00 34.60 2.40
1990 2016 3.135530 AGAATGCCAGGTACTCCAGAATC 59.864 47.826 0.00 0.00 34.60 2.52
1992 2018 1.833630 TGCCAGGTACTCCAGAATCTG 59.166 52.381 2.68 2.68 34.60 2.90
2135 2318 5.066246 TGCAGTCGAATCAATTCAATGCATA 59.934 36.000 17.76 0.00 40.36 3.14
2281 2466 2.577059 CCCACAGCCGACACGTAT 59.423 61.111 0.00 0.00 0.00 3.06
2565 2753 7.254084 GCATGCCAGTTATTTTATCGGAAAAAG 60.254 37.037 6.36 0.00 32.20 2.27
2588 2776 5.705905 AGATGAGTATCGGACATCACGAATA 59.294 40.000 0.00 0.00 44.20 1.75
2667 2860 5.163693 ACAAAAAGAAGTACGTCCCACTTTG 60.164 40.000 5.10 11.40 36.38 2.77
2706 2899 2.418197 CCTCATTTGCTGCATGGAAAGG 60.418 50.000 1.84 3.78 39.29 3.11
2720 2913 1.303561 AAAGGCCGAGCTTGATGCA 60.304 52.632 1.22 0.00 45.94 3.96
2810 3003 3.576550 ACATTTGTGGCCTCGGTTTAATT 59.423 39.130 3.32 0.00 0.00 1.40
2839 3032 0.533032 GTCACCTAGTGTGCTCCTCC 59.467 60.000 6.51 0.00 45.03 4.30
2864 3057 1.591768 CACCCCACCCCAACTATACT 58.408 55.000 0.00 0.00 0.00 2.12
2866 3059 1.920351 ACCCCACCCCAACTATACTTG 59.080 52.381 0.00 0.00 0.00 3.16
2887 3081 8.441312 ACTTGTAATTCCTTTTAGTCGTTTGA 57.559 30.769 0.00 0.00 0.00 2.69
2936 3292 2.000048 TCCCCTATTGTCCCAAAGCTT 59.000 47.619 0.00 0.00 0.00 3.74
2941 3297 4.283212 CCCTATTGTCCCAAAGCTTCAAAA 59.717 41.667 0.00 0.00 0.00 2.44
2984 3340 4.504097 GCTTGCGATGTTTTTGAGAACTTT 59.496 37.500 0.00 0.00 0.00 2.66
2985 3341 5.005682 GCTTGCGATGTTTTTGAGAACTTTT 59.994 36.000 0.00 0.00 0.00 2.27
2989 3345 6.367422 TGCGATGTTTTTGAGAACTTTTGTTT 59.633 30.769 0.00 0.00 43.66 2.83
3069 3425 1.181786 CGGATCCTCTAGGGCATCTC 58.818 60.000 10.75 0.00 35.41 2.75
3079 3435 3.898123 TCTAGGGCATCTCCAACATAGAC 59.102 47.826 0.00 0.00 36.21 2.59
3086 3442 5.437060 GCATCTCCAACATAGACCCTTAAA 58.563 41.667 0.00 0.00 0.00 1.52
3090 3446 2.681344 CCAACATAGACCCTTAAACCGC 59.319 50.000 0.00 0.00 0.00 5.68
3092 3448 1.211212 ACATAGACCCTTAAACCGCCC 59.789 52.381 0.00 0.00 0.00 6.13
3093 3449 0.466963 ATAGACCCTTAAACCGCCCG 59.533 55.000 0.00 0.00 0.00 6.13
3101 3457 1.263217 CTTAAACCGCCCGCATATGTC 59.737 52.381 4.29 0.00 0.00 3.06
3127 3483 3.008375 ACATCATGGTCCGGATATCTTGG 59.992 47.826 7.81 5.50 0.00 3.61
3128 3484 1.347707 TCATGGTCCGGATATCTTGGC 59.652 52.381 7.81 0.00 0.00 4.52
3138 3536 3.003689 CGGATATCTTGGCGCATTCTTTT 59.996 43.478 10.83 0.00 0.00 2.27
3148 3546 2.123342 CGCATTCTTTTCCGCAAAACA 58.877 42.857 0.00 0.00 0.00 2.83
3149 3547 2.153627 CGCATTCTTTTCCGCAAAACAG 59.846 45.455 0.00 0.00 0.00 3.16
3152 3550 3.708563 TTCTTTTCCGCAAAACAGAGG 57.291 42.857 0.00 0.00 0.00 3.69
3176 3574 1.627864 TAGGGGCTTTGCAAAAGTCC 58.372 50.000 13.84 16.62 41.21 3.85
3210 3608 2.710902 CCGCGTCTGACCATCCTGA 61.711 63.158 4.92 0.00 0.00 3.86
3217 3616 1.915078 CTGACCATCCTGACCCACCC 61.915 65.000 0.00 0.00 0.00 4.61
3226 3625 1.568597 CCTGACCCACCCAAATCCATA 59.431 52.381 0.00 0.00 0.00 2.74
3262 3661 0.464554 CCAATCCGCCTCTTCTTCCC 60.465 60.000 0.00 0.00 0.00 3.97
3278 3677 0.772124 TCCCCCTTGTTCTGCTTCCT 60.772 55.000 0.00 0.00 0.00 3.36
3279 3678 0.322906 CCCCCTTGTTCTGCTTCCTC 60.323 60.000 0.00 0.00 0.00 3.71
3280 3679 0.674895 CCCCTTGTTCTGCTTCCTCG 60.675 60.000 0.00 0.00 0.00 4.63
3281 3680 1.301677 CCCTTGTTCTGCTTCCTCGC 61.302 60.000 0.00 0.00 0.00 5.03
3282 3681 1.301677 CCTTGTTCTGCTTCCTCGCC 61.302 60.000 0.00 0.00 0.00 5.54
3283 3682 0.603707 CTTGTTCTGCTTCCTCGCCA 60.604 55.000 0.00 0.00 0.00 5.69
3284 3683 0.036732 TTGTTCTGCTTCCTCGCCAT 59.963 50.000 0.00 0.00 0.00 4.40
3285 3684 0.391661 TGTTCTGCTTCCTCGCCATC 60.392 55.000 0.00 0.00 0.00 3.51
3286 3685 1.092345 GTTCTGCTTCCTCGCCATCC 61.092 60.000 0.00 0.00 0.00 3.51
3287 3686 1.267574 TTCTGCTTCCTCGCCATCCT 61.268 55.000 0.00 0.00 0.00 3.24
3288 3687 1.227497 CTGCTTCCTCGCCATCCTC 60.227 63.158 0.00 0.00 0.00 3.71
3289 3688 2.110006 GCTTCCTCGCCATCCTCC 59.890 66.667 0.00 0.00 0.00 4.30
3290 3689 2.439104 GCTTCCTCGCCATCCTCCT 61.439 63.158 0.00 0.00 0.00 3.69
3291 3690 1.745264 CTTCCTCGCCATCCTCCTC 59.255 63.158 0.00 0.00 0.00 3.71
3292 3691 1.753368 CTTCCTCGCCATCCTCCTCC 61.753 65.000 0.00 0.00 0.00 4.30
3293 3692 3.610669 CCTCGCCATCCTCCTCCG 61.611 72.222 0.00 0.00 0.00 4.63
3294 3693 4.292178 CTCGCCATCCTCCTCCGC 62.292 72.222 0.00 0.00 0.00 5.54
3297 3696 4.554036 GCCATCCTCCTCCGCCAC 62.554 72.222 0.00 0.00 0.00 5.01
3298 3697 3.866582 CCATCCTCCTCCGCCACC 61.867 72.222 0.00 0.00 0.00 4.61
3299 3698 4.227134 CATCCTCCTCCGCCACCG 62.227 72.222 0.00 0.00 0.00 4.94
3314 3713 2.657237 CCGCCACGGTTCTTCTCT 59.343 61.111 0.00 0.00 42.73 3.10
3315 3714 1.738099 CCGCCACGGTTCTTCTCTG 60.738 63.158 0.00 0.00 42.73 3.35
3316 3715 1.738099 CGCCACGGTTCTTCTCTGG 60.738 63.158 0.00 0.00 0.00 3.86
3317 3716 2.035442 GCCACGGTTCTTCTCTGGC 61.035 63.158 0.00 0.00 40.68 4.85
3318 3717 1.376037 CCACGGTTCTTCTCTGGCC 60.376 63.158 0.00 0.00 0.00 5.36
3319 3718 1.738099 CACGGTTCTTCTCTGGCCG 60.738 63.158 0.00 0.00 46.83 6.13
3320 3719 2.125512 CGGTTCTTCTCTGGCCGG 60.126 66.667 4.71 4.71 38.86 6.13
3321 3720 2.436824 GGTTCTTCTCTGGCCGGC 60.437 66.667 21.18 21.18 0.00 6.13
3322 3721 2.347490 GTTCTTCTCTGGCCGGCA 59.653 61.111 30.85 13.75 0.00 5.69
3323 3722 2.035442 GTTCTTCTCTGGCCGGCAC 61.035 63.158 30.85 18.39 0.00 5.01
3324 3723 2.515979 TTCTTCTCTGGCCGGCACA 61.516 57.895 30.85 22.10 0.00 4.57
3325 3724 2.731691 TTCTTCTCTGGCCGGCACAC 62.732 60.000 30.85 12.03 0.00 3.82
3326 3725 3.535629 CTTCTCTGGCCGGCACACA 62.536 63.158 30.85 16.55 0.00 3.72
3327 3726 3.535629 TTCTCTGGCCGGCACACAG 62.536 63.158 30.85 25.31 0.00 3.66
3334 3733 4.424566 CCGGCACACAGGCATTGC 62.425 66.667 0.00 0.00 44.47 3.56
3344 3743 4.114997 GGCATTGCCGAACCACCG 62.115 66.667 12.82 0.00 39.62 4.94
3345 3744 4.776647 GCATTGCCGAACCACCGC 62.777 66.667 0.00 0.00 0.00 5.68
3346 3745 3.361158 CATTGCCGAACCACCGCA 61.361 61.111 0.00 0.00 0.00 5.69
3347 3746 2.596046 ATTGCCGAACCACCGCAA 60.596 55.556 0.00 0.00 33.10 4.85
3348 3747 2.914908 ATTGCCGAACCACCGCAAC 61.915 57.895 0.00 0.00 32.06 4.17
3351 3750 3.353836 CCGAACCACCGCAACCAG 61.354 66.667 0.00 0.00 0.00 4.00
3352 3751 4.025401 CGAACCACCGCAACCAGC 62.025 66.667 0.00 0.00 40.87 4.85
3353 3752 2.904866 GAACCACCGCAACCAGCA 60.905 61.111 0.00 0.00 46.13 4.41
3354 3753 2.203480 AACCACCGCAACCAGCAT 60.203 55.556 0.00 0.00 46.13 3.79
3355 3754 2.200170 GAACCACCGCAACCAGCATC 62.200 60.000 0.00 0.00 46.13 3.91
3356 3755 3.803082 CCACCGCAACCAGCATCG 61.803 66.667 0.00 0.00 46.13 3.84
3357 3756 2.741985 CACCGCAACCAGCATCGA 60.742 61.111 0.00 0.00 46.13 3.59
3358 3757 2.434884 ACCGCAACCAGCATCGAG 60.435 61.111 0.00 0.00 46.13 4.04
3359 3758 3.869272 CCGCAACCAGCATCGAGC 61.869 66.667 0.00 0.00 46.13 5.03
3376 3775 2.695646 CGCTCGCTCGCCTTTTAC 59.304 61.111 0.00 0.00 0.00 2.01
3377 3776 2.695646 GCTCGCTCGCCTTTTACG 59.304 61.111 0.00 0.00 0.00 3.18
3378 3777 1.804326 GCTCGCTCGCCTTTTACGA 60.804 57.895 0.00 0.00 38.02 3.43
3379 3778 1.989163 CTCGCTCGCCTTTTACGAC 59.011 57.895 0.00 0.00 35.35 4.34
3380 3779 1.730593 CTCGCTCGCCTTTTACGACG 61.731 60.000 0.00 0.00 35.35 5.12
3381 3780 2.785105 CGCTCGCCTTTTACGACGG 61.785 63.158 0.00 0.00 35.35 4.79
3382 3781 3.078560 CTCGCCTTTTACGACGGC 58.921 61.111 0.00 0.00 40.40 5.68
3421 3820 3.498502 CCGTAGGCAGGTAGACTCT 57.501 57.895 0.00 0.00 46.14 3.24
3422 3821 1.025812 CCGTAGGCAGGTAGACTCTG 58.974 60.000 0.00 0.00 46.14 3.35
3423 3822 1.682394 CCGTAGGCAGGTAGACTCTGT 60.682 57.143 0.00 0.00 46.14 3.41
3424 3823 1.671845 CGTAGGCAGGTAGACTCTGTC 59.328 57.143 0.00 0.00 36.54 3.51
3425 3824 2.025898 GTAGGCAGGTAGACTCTGTCC 58.974 57.143 0.00 0.00 37.55 4.02
3426 3825 0.324830 AGGCAGGTAGACTCTGTCCC 60.325 60.000 0.00 0.00 37.55 4.46
3427 3826 1.331399 GGCAGGTAGACTCTGTCCCC 61.331 65.000 0.00 0.00 34.89 4.81
3428 3827 1.331399 GCAGGTAGACTCTGTCCCCC 61.331 65.000 0.00 0.00 34.89 5.40
3429 3828 0.336737 CAGGTAGACTCTGTCCCCCT 59.663 60.000 0.00 0.00 34.76 4.79
3430 3829 0.336737 AGGTAGACTCTGTCCCCCTG 59.663 60.000 5.37 0.00 33.70 4.45
3431 3830 1.331399 GGTAGACTCTGTCCCCCTGC 61.331 65.000 0.00 0.00 32.18 4.85
3432 3831 1.001760 TAGACTCTGTCCCCCTGCC 59.998 63.158 0.00 0.00 32.18 4.85
3433 3832 2.856039 TAGACTCTGTCCCCCTGCCG 62.856 65.000 0.00 0.00 32.18 5.69
3434 3833 4.316823 ACTCTGTCCCCCTGCCGA 62.317 66.667 0.00 0.00 0.00 5.54
3435 3834 3.003173 CTCTGTCCCCCTGCCGAA 61.003 66.667 0.00 0.00 0.00 4.30
3436 3835 2.285368 TCTGTCCCCCTGCCGAAT 60.285 61.111 0.00 0.00 0.00 3.34
3437 3836 1.915078 CTCTGTCCCCCTGCCGAATT 61.915 60.000 0.00 0.00 0.00 2.17
3438 3837 1.452108 CTGTCCCCCTGCCGAATTC 60.452 63.158 0.00 0.00 0.00 2.17
3439 3838 2.513897 GTCCCCCTGCCGAATTCG 60.514 66.667 20.92 20.92 39.44 3.34
3440 3839 3.006728 TCCCCCTGCCGAATTCGT 61.007 61.111 25.10 0.00 37.74 3.85
3441 3840 2.513897 CCCCCTGCCGAATTCGTC 60.514 66.667 25.10 14.68 37.74 4.20
3442 3841 2.513897 CCCCTGCCGAATTCGTCC 60.514 66.667 25.10 16.17 37.74 4.79
3443 3842 2.267642 CCCTGCCGAATTCGTCCA 59.732 61.111 25.10 19.45 37.74 4.02
3444 3843 1.153168 CCCTGCCGAATTCGTCCAT 60.153 57.895 25.10 0.00 37.74 3.41
3445 3844 1.439353 CCCTGCCGAATTCGTCCATG 61.439 60.000 25.10 17.12 37.74 3.66
3446 3845 1.439353 CCTGCCGAATTCGTCCATGG 61.439 60.000 25.10 18.16 37.74 3.66
3447 3846 2.051804 CTGCCGAATTCGTCCATGGC 62.052 60.000 25.10 19.56 42.76 4.40
3448 3847 3.014036 CCGAATTCGTCCATGGCG 58.986 61.111 25.10 18.73 37.74 5.69
3449 3848 2.534019 CCGAATTCGTCCATGGCGG 61.534 63.158 25.10 16.78 37.74 6.13
3450 3849 1.813753 CGAATTCGTCCATGGCGGT 60.814 57.895 19.67 12.63 35.57 5.68
3451 3850 1.762222 CGAATTCGTCCATGGCGGTC 61.762 60.000 19.67 17.11 35.57 4.79
3452 3851 0.742990 GAATTCGTCCATGGCGGTCA 60.743 55.000 22.59 11.52 35.57 4.02
3453 3852 1.024579 AATTCGTCCATGGCGGTCAC 61.025 55.000 22.59 9.14 35.57 3.67
3454 3853 2.869503 ATTCGTCCATGGCGGTCACC 62.870 60.000 22.59 0.00 35.57 4.02
3455 3854 4.386951 CGTCCATGGCGGTCACCA 62.387 66.667 17.50 0.00 45.82 4.17
3456 3855 2.746277 GTCCATGGCGGTCACCAC 60.746 66.667 6.96 0.00 44.17 4.16
3457 3856 4.386951 TCCATGGCGGTCACCACG 62.387 66.667 6.96 0.00 44.17 4.94
3465 3864 4.722700 GGTCACCACGCCTGCCAT 62.723 66.667 0.00 0.00 0.00 4.40
3466 3865 3.434319 GTCACCACGCCTGCCATG 61.434 66.667 0.00 0.00 0.00 3.66
3467 3866 3.952508 TCACCACGCCTGCCATGT 61.953 61.111 0.00 0.00 0.00 3.21
3468 3867 3.740397 CACCACGCCTGCCATGTG 61.740 66.667 0.00 0.00 0.00 3.21
3469 3868 4.269523 ACCACGCCTGCCATGTGT 62.270 61.111 0.00 0.00 31.75 3.72
3470 3869 2.985282 CCACGCCTGCCATGTGTT 60.985 61.111 0.00 0.00 31.75 3.32
3471 3870 2.562912 CACGCCTGCCATGTGTTC 59.437 61.111 0.00 0.00 0.00 3.18
3472 3871 3.049674 ACGCCTGCCATGTGTTCG 61.050 61.111 0.00 0.00 0.00 3.95
3473 3872 3.803082 CGCCTGCCATGTGTTCGG 61.803 66.667 0.00 0.00 0.00 4.30
3474 3873 2.672996 GCCTGCCATGTGTTCGGT 60.673 61.111 0.00 0.00 0.00 4.69
3475 3874 2.690778 GCCTGCCATGTGTTCGGTC 61.691 63.158 0.00 0.00 0.00 4.79
3476 3875 1.302431 CCTGCCATGTGTTCGGTCA 60.302 57.895 0.00 0.00 0.00 4.02
3477 3876 0.888736 CCTGCCATGTGTTCGGTCAA 60.889 55.000 0.00 0.00 0.00 3.18
3478 3877 0.950836 CTGCCATGTGTTCGGTCAAA 59.049 50.000 0.00 0.00 0.00 2.69
3479 3878 1.541147 CTGCCATGTGTTCGGTCAAAT 59.459 47.619 0.00 0.00 0.00 2.32
3480 3879 1.269174 TGCCATGTGTTCGGTCAAATG 59.731 47.619 0.00 4.64 34.02 2.32
3481 3880 1.981254 CCATGTGTTCGGTCAAATGC 58.019 50.000 0.00 0.00 33.18 3.56
3482 3881 1.402720 CCATGTGTTCGGTCAAATGCC 60.403 52.381 0.00 0.00 33.18 4.40
3483 3882 1.269174 CATGTGTTCGGTCAAATGCCA 59.731 47.619 0.00 0.00 0.00 4.92
3484 3883 1.614996 TGTGTTCGGTCAAATGCCAT 58.385 45.000 0.00 0.00 0.00 4.40
3485 3884 1.959985 TGTGTTCGGTCAAATGCCATT 59.040 42.857 0.00 0.00 0.00 3.16
3486 3885 2.288091 TGTGTTCGGTCAAATGCCATTG 60.288 45.455 0.00 0.00 0.00 2.82
3487 3886 2.030363 GTGTTCGGTCAAATGCCATTGA 60.030 45.455 0.00 0.00 36.99 2.57
3488 3887 2.228582 TGTTCGGTCAAATGCCATTGAG 59.771 45.455 1.83 0.00 39.84 3.02
3496 3895 5.899299 GTCAAATGCCATTGAGCTTATTCT 58.101 37.500 1.83 0.00 39.84 2.40
3497 3896 5.975939 GTCAAATGCCATTGAGCTTATTCTC 59.024 40.000 1.83 0.00 39.84 2.87
3498 3897 5.653330 TCAAATGCCATTGAGCTTATTCTCA 59.347 36.000 0.00 0.00 40.99 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.101448 ACGAGGCTGTGGGATGGC 62.101 66.667 0.00 0.00 0.00 4.40
14 15 2.187946 GACGAGGCTGTGGGATGG 59.812 66.667 0.00 0.00 0.00 3.51
15 16 1.142748 GAGACGAGGCTGTGGGATG 59.857 63.158 0.00 0.00 0.00 3.51
16 17 0.689080 ATGAGACGAGGCTGTGGGAT 60.689 55.000 0.00 0.00 0.00 3.85
17 18 1.305297 ATGAGACGAGGCTGTGGGA 60.305 57.895 0.00 0.00 0.00 4.37
18 19 1.153489 CATGAGACGAGGCTGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
19 20 1.153489 CCATGAGACGAGGCTGTGG 60.153 63.158 0.00 0.00 0.00 4.17
20 21 1.812922 GCCATGAGACGAGGCTGTG 60.813 63.158 0.00 0.00 44.92 3.66
21 22 2.581354 GCCATGAGACGAGGCTGT 59.419 61.111 0.00 0.00 44.92 4.40
25 26 0.449388 GCAAAAGCCATGAGACGAGG 59.551 55.000 0.00 0.00 0.00 4.63
26 27 0.095935 CGCAAAAGCCATGAGACGAG 59.904 55.000 0.00 0.00 0.00 4.18
27 28 1.298157 CCGCAAAAGCCATGAGACGA 61.298 55.000 0.00 0.00 0.00 4.20
28 29 1.135315 CCGCAAAAGCCATGAGACG 59.865 57.895 0.00 0.00 0.00 4.18
29 30 1.064654 GATCCGCAAAAGCCATGAGAC 59.935 52.381 0.00 0.00 0.00 3.36
30 31 1.339920 TGATCCGCAAAAGCCATGAGA 60.340 47.619 0.00 0.00 0.00 3.27
31 32 1.065102 CTGATCCGCAAAAGCCATGAG 59.935 52.381 0.00 0.00 0.00 2.90
32 33 1.097232 CTGATCCGCAAAAGCCATGA 58.903 50.000 0.00 0.00 0.00 3.07
33 34 0.101759 CCTGATCCGCAAAAGCCATG 59.898 55.000 0.00 0.00 0.00 3.66
34 35 0.034186 TCCTGATCCGCAAAAGCCAT 60.034 50.000 0.00 0.00 0.00 4.40
35 36 0.677731 CTCCTGATCCGCAAAAGCCA 60.678 55.000 0.00 0.00 0.00 4.75
36 37 0.392998 TCTCCTGATCCGCAAAAGCC 60.393 55.000 0.00 0.00 0.00 4.35
37 38 1.131315 GTTCTCCTGATCCGCAAAAGC 59.869 52.381 0.00 0.00 0.00 3.51
38 39 2.160417 GTGTTCTCCTGATCCGCAAAAG 59.840 50.000 0.00 0.00 0.00 2.27
39 40 2.151202 GTGTTCTCCTGATCCGCAAAA 58.849 47.619 0.00 0.00 0.00 2.44
40 41 1.808411 GTGTTCTCCTGATCCGCAAA 58.192 50.000 0.00 0.00 0.00 3.68
41 42 0.389817 CGTGTTCTCCTGATCCGCAA 60.390 55.000 0.00 0.00 0.00 4.85
42 43 1.215382 CGTGTTCTCCTGATCCGCA 59.785 57.895 0.00 0.00 0.00 5.69
43 44 0.454600 TACGTGTTCTCCTGATCCGC 59.545 55.000 0.00 0.00 0.00 5.54
44 45 2.933495 TTACGTGTTCTCCTGATCCG 57.067 50.000 0.00 0.00 0.00 4.18
45 46 3.367025 CGTTTTACGTGTTCTCCTGATCC 59.633 47.826 0.00 0.00 36.74 3.36
46 47 3.181533 GCGTTTTACGTGTTCTCCTGATC 60.182 47.826 0.00 0.00 44.73 2.92
47 48 2.735134 GCGTTTTACGTGTTCTCCTGAT 59.265 45.455 0.00 0.00 44.73 2.90
48 49 2.129607 GCGTTTTACGTGTTCTCCTGA 58.870 47.619 0.00 0.00 44.73 3.86
49 50 1.136721 CGCGTTTTACGTGTTCTCCTG 60.137 52.381 0.00 0.00 45.94 3.86
50 51 1.134226 CGCGTTTTACGTGTTCTCCT 58.866 50.000 0.00 0.00 45.94 3.69
51 52 3.626542 CGCGTTTTACGTGTTCTCC 57.373 52.632 0.00 0.00 45.94 3.71
58 59 0.979811 CACGATCTCGCGTTTTACGT 59.020 50.000 5.77 10.39 44.73 3.57
59 60 0.979811 ACACGATCTCGCGTTTTACG 59.020 50.000 5.77 9.74 43.59 3.18
60 61 1.524391 GCACACGATCTCGCGTTTTAC 60.524 52.381 5.77 0.00 43.59 2.01
61 62 0.711670 GCACACGATCTCGCGTTTTA 59.288 50.000 5.77 0.00 43.59 1.52
62 63 1.218875 TGCACACGATCTCGCGTTTT 61.219 50.000 5.77 0.00 43.59 2.43
63 64 1.617755 CTGCACACGATCTCGCGTTT 61.618 55.000 5.77 0.00 43.59 3.60
64 65 2.049526 TGCACACGATCTCGCGTT 60.050 55.556 5.77 0.00 43.59 4.84
65 66 2.504899 CTGCACACGATCTCGCGT 60.505 61.111 5.77 0.00 46.88 6.01
66 67 2.202479 TCTGCACACGATCTCGCG 60.202 61.111 0.00 0.00 44.43 5.87
67 68 1.153939 ACTCTGCACACGATCTCGC 60.154 57.895 0.00 0.00 44.43 5.03
68 69 1.409227 GCACTCTGCACACGATCTCG 61.409 60.000 0.00 0.00 44.26 4.04
69 70 2.367844 GCACTCTGCACACGATCTC 58.632 57.895 0.00 0.00 44.26 2.75
70 71 4.586618 GCACTCTGCACACGATCT 57.413 55.556 0.00 0.00 44.26 2.75
89 90 3.524606 TAGCTAGGACGGGCGTGC 61.525 66.667 0.00 0.00 36.69 5.34
90 91 2.061182 GAGTAGCTAGGACGGGCGTG 62.061 65.000 0.00 0.00 0.00 5.34
91 92 1.823041 GAGTAGCTAGGACGGGCGT 60.823 63.158 0.00 0.00 0.00 5.68
92 93 2.894565 CGAGTAGCTAGGACGGGCG 61.895 68.421 0.00 0.00 0.00 6.13
93 94 3.032339 CGAGTAGCTAGGACGGGC 58.968 66.667 0.00 0.00 0.00 6.13
94 95 3.032339 GCGAGTAGCTAGGACGGG 58.968 66.667 13.35 0.00 44.04 5.28
95 96 2.376231 CGTGCGAGTAGCTAGGACGG 62.376 65.000 14.95 0.95 43.92 4.79
105 106 4.429212 ATGTGGCGCGTGCGAGTA 62.429 61.111 19.66 3.48 44.10 2.59
123 124 2.293122 TCTGTTAATAATGCATGGCCGC 59.707 45.455 0.00 0.00 0.00 6.53
124 125 4.566545 TTCTGTTAATAATGCATGGCCG 57.433 40.909 0.00 0.00 0.00 6.13
125 126 6.340522 AGTTTTCTGTTAATAATGCATGGCC 58.659 36.000 0.00 0.00 0.00 5.36
126 127 8.925161 TTAGTTTTCTGTTAATAATGCATGGC 57.075 30.769 0.00 0.00 0.00 4.40
137 138 9.465199 ACCAAGGTTAGTTTAGTTTTCTGTTAA 57.535 29.630 0.00 0.00 0.00 2.01
138 139 8.895737 CACCAAGGTTAGTTTAGTTTTCTGTTA 58.104 33.333 0.00 0.00 0.00 2.41
139 140 7.612633 TCACCAAGGTTAGTTTAGTTTTCTGTT 59.387 33.333 0.00 0.00 0.00 3.16
140 141 7.066645 GTCACCAAGGTTAGTTTAGTTTTCTGT 59.933 37.037 0.00 0.00 0.00 3.41
141 142 7.066525 TGTCACCAAGGTTAGTTTAGTTTTCTG 59.933 37.037 0.00 0.00 0.00 3.02
142 143 7.114095 TGTCACCAAGGTTAGTTTAGTTTTCT 58.886 34.615 0.00 0.00 0.00 2.52
143 144 7.324354 TGTCACCAAGGTTAGTTTAGTTTTC 57.676 36.000 0.00 0.00 0.00 2.29
144 145 7.177041 TGTTGTCACCAAGGTTAGTTTAGTTTT 59.823 33.333 0.00 0.00 0.00 2.43
145 146 6.660094 TGTTGTCACCAAGGTTAGTTTAGTTT 59.340 34.615 0.00 0.00 0.00 2.66
146 147 6.181908 TGTTGTCACCAAGGTTAGTTTAGTT 58.818 36.000 0.00 0.00 0.00 2.24
147 148 5.747342 TGTTGTCACCAAGGTTAGTTTAGT 58.253 37.500 0.00 0.00 0.00 2.24
148 149 6.053005 TCTGTTGTCACCAAGGTTAGTTTAG 58.947 40.000 0.00 0.00 0.00 1.85
149 150 5.991861 TCTGTTGTCACCAAGGTTAGTTTA 58.008 37.500 0.00 0.00 0.00 2.01
150 151 4.850680 TCTGTTGTCACCAAGGTTAGTTT 58.149 39.130 0.00 0.00 0.00 2.66
151 152 4.163458 TCTCTGTTGTCACCAAGGTTAGTT 59.837 41.667 0.00 0.00 0.00 2.24
152 153 3.709653 TCTCTGTTGTCACCAAGGTTAGT 59.290 43.478 0.00 0.00 0.00 2.24
153 154 4.336889 TCTCTGTTGTCACCAAGGTTAG 57.663 45.455 0.00 0.00 0.00 2.34
154 155 4.974645 ATCTCTGTTGTCACCAAGGTTA 57.025 40.909 0.00 0.00 0.00 2.85
155 156 3.864789 ATCTCTGTTGTCACCAAGGTT 57.135 42.857 0.00 0.00 0.00 3.50
156 157 3.864789 AATCTCTGTTGTCACCAAGGT 57.135 42.857 0.00 0.00 0.00 3.50
157 158 4.641396 TGTAATCTCTGTTGTCACCAAGG 58.359 43.478 0.00 0.00 0.00 3.61
158 159 5.934043 TCATGTAATCTCTGTTGTCACCAAG 59.066 40.000 0.00 0.00 0.00 3.61
159 160 5.863965 TCATGTAATCTCTGTTGTCACCAA 58.136 37.500 0.00 0.00 0.00 3.67
160 161 5.482163 TCATGTAATCTCTGTTGTCACCA 57.518 39.130 0.00 0.00 0.00 4.17
161 162 5.163814 GCTTCATGTAATCTCTGTTGTCACC 60.164 44.000 0.00 0.00 0.00 4.02
162 163 5.641209 AGCTTCATGTAATCTCTGTTGTCAC 59.359 40.000 0.00 0.00 0.00 3.67
163 164 5.798132 AGCTTCATGTAATCTCTGTTGTCA 58.202 37.500 0.00 0.00 0.00 3.58
164 165 7.331934 TGTTAGCTTCATGTAATCTCTGTTGTC 59.668 37.037 0.00 0.00 0.00 3.18
165 166 7.118390 GTGTTAGCTTCATGTAATCTCTGTTGT 59.882 37.037 0.00 0.00 0.00 3.32
166 167 7.459486 GTGTTAGCTTCATGTAATCTCTGTTG 58.541 38.462 0.00 0.00 0.00 3.33
167 168 6.311445 CGTGTTAGCTTCATGTAATCTCTGTT 59.689 38.462 0.00 0.00 0.00 3.16
168 169 5.807520 CGTGTTAGCTTCATGTAATCTCTGT 59.192 40.000 0.00 0.00 0.00 3.41
169 170 6.036470 TCGTGTTAGCTTCATGTAATCTCTG 58.964 40.000 0.00 0.00 0.00 3.35
170 171 6.208988 TCGTGTTAGCTTCATGTAATCTCT 57.791 37.500 0.00 0.00 0.00 3.10
171 172 6.563010 GCATCGTGTTAGCTTCATGTAATCTC 60.563 42.308 0.00 0.00 0.00 2.75
172 173 5.235186 GCATCGTGTTAGCTTCATGTAATCT 59.765 40.000 0.00 0.00 0.00 2.40
173 174 5.006649 TGCATCGTGTTAGCTTCATGTAATC 59.993 40.000 0.00 0.00 0.00 1.75
174 175 4.875536 TGCATCGTGTTAGCTTCATGTAAT 59.124 37.500 0.00 0.00 0.00 1.89
175 176 4.249661 TGCATCGTGTTAGCTTCATGTAA 58.750 39.130 0.00 0.00 0.00 2.41
176 177 3.855858 TGCATCGTGTTAGCTTCATGTA 58.144 40.909 0.00 0.00 0.00 2.29
177 178 2.698803 TGCATCGTGTTAGCTTCATGT 58.301 42.857 0.00 0.00 0.00 3.21
178 179 3.957671 ATGCATCGTGTTAGCTTCATG 57.042 42.857 0.00 0.00 0.00 3.07
179 180 3.488047 GCAATGCATCGTGTTAGCTTCAT 60.488 43.478 0.00 0.00 0.00 2.57
180 181 2.159531 GCAATGCATCGTGTTAGCTTCA 60.160 45.455 0.00 0.00 0.00 3.02
181 182 2.444351 GCAATGCATCGTGTTAGCTTC 58.556 47.619 0.00 0.00 0.00 3.86
182 183 1.133025 GGCAATGCATCGTGTTAGCTT 59.867 47.619 7.79 0.00 0.00 3.74
183 184 0.734889 GGCAATGCATCGTGTTAGCT 59.265 50.000 7.79 0.00 0.00 3.32
184 185 0.248621 GGGCAATGCATCGTGTTAGC 60.249 55.000 7.79 0.00 0.00 3.09
185 186 1.093972 TGGGCAATGCATCGTGTTAG 58.906 50.000 7.79 0.00 0.00 2.34
186 187 1.761449 ATGGGCAATGCATCGTGTTA 58.239 45.000 7.79 0.00 0.00 2.41
187 188 0.896923 AATGGGCAATGCATCGTGTT 59.103 45.000 7.79 0.00 0.00 3.32
188 189 0.457035 GAATGGGCAATGCATCGTGT 59.543 50.000 7.79 0.00 0.00 4.49
211 212 1.329256 ACTAGTGACGAACAGTGCCT 58.671 50.000 0.00 0.00 33.78 4.75
280 284 7.542130 GCAAGTCTTTATTATGTTTGGTGGAAG 59.458 37.037 0.00 0.00 0.00 3.46
313 317 0.721154 GACTTCATGATTCACGCGCA 59.279 50.000 5.73 0.00 0.00 6.09
358 362 9.936759 GGGAAATTGACAAGACCAAAATATTTA 57.063 29.630 0.01 0.00 0.00 1.40
387 391 3.119209 TCAGCAGCAATTTGTGACAACAA 60.119 39.130 0.00 0.00 44.59 2.83
419 423 3.711704 TCTCTCTCCCTCTCTCTCTCTTC 59.288 52.174 0.00 0.00 0.00 2.87
769 778 3.582998 TGGGCCTTCCAAATGATAGAG 57.417 47.619 4.53 0.00 43.84 2.43
805 814 4.082354 GTCTAGCTACTTTCTTGTTCCCGA 60.082 45.833 0.00 0.00 0.00 5.14
813 822 2.176889 TGCCGGTCTAGCTACTTTCTT 58.823 47.619 1.90 0.00 0.00 2.52
927 936 3.948196 CAGTAGCTACTGTCCGTCTAC 57.052 52.381 35.77 6.25 46.51 2.59
970 979 1.479709 CTTGTCTCCTCACCCTCGAT 58.520 55.000 0.00 0.00 0.00 3.59
1059 1073 1.343821 CAAGAATGCCGCGACGTAC 59.656 57.895 8.23 0.00 0.00 3.67
1332 1346 3.906720 TGCATGGTACCTTTAGGAGTC 57.093 47.619 14.36 0.00 38.94 3.36
1411 1425 2.411547 CGGCAATCAAGTTCGAGTGTTC 60.412 50.000 0.00 0.00 33.61 3.18
1438 1453 1.227645 CATGCCACCGGTCGATGAT 60.228 57.895 2.59 0.00 0.00 2.45
1703 1718 0.692419 AGGAGTTGATGCCCTCGGAT 60.692 55.000 0.00 0.00 0.00 4.18
1768 1783 9.856488 GATAAAGATTTGATGCATGCTTCATAT 57.144 29.630 30.13 28.84 31.64 1.78
1769 1784 9.074576 AGATAAAGATTTGATGCATGCTTCATA 57.925 29.630 30.13 26.18 31.64 2.15
1791 1813 1.899814 AGCGTGTTGGAGTTGGAGATA 59.100 47.619 0.00 0.00 0.00 1.98
1817 1839 2.718220 CGCAAGTCACTCTCACGAG 58.282 57.895 0.00 0.00 43.10 4.18
1858 1884 1.315690 CCTGCTCCATCGAAATGCAT 58.684 50.000 0.00 0.00 33.02 3.96
1954 1980 6.375455 ACCTGGCATTCTCAAAAATACTACTG 59.625 38.462 0.00 0.00 0.00 2.74
1956 1982 6.759497 ACCTGGCATTCTCAAAAATACTAC 57.241 37.500 0.00 0.00 0.00 2.73
1958 1984 6.485171 AGTACCTGGCATTCTCAAAAATACT 58.515 36.000 0.00 0.00 0.00 2.12
1959 1985 6.183360 GGAGTACCTGGCATTCTCAAAAATAC 60.183 42.308 0.00 0.00 0.00 1.89
1960 1986 5.885912 GGAGTACCTGGCATTCTCAAAAATA 59.114 40.000 0.00 0.00 0.00 1.40
1961 1987 4.706962 GGAGTACCTGGCATTCTCAAAAAT 59.293 41.667 0.00 0.00 0.00 1.82
1970 1996 3.118112 CAGATTCTGGAGTACCTGGCATT 60.118 47.826 5.73 0.00 36.08 3.56
1973 1999 2.111384 TCAGATTCTGGAGTACCTGGC 58.889 52.381 13.59 0.00 36.08 4.85
1985 2011 6.409704 TCAGATCGGTTGAAATTCAGATTCT 58.590 36.000 0.00 0.00 0.00 2.40
1986 2012 6.668541 TCAGATCGGTTGAAATTCAGATTC 57.331 37.500 0.00 0.00 0.00 2.52
1987 2013 7.636150 ATTCAGATCGGTTGAAATTCAGATT 57.364 32.000 0.00 0.00 38.01 2.40
1988 2014 7.636150 AATTCAGATCGGTTGAAATTCAGAT 57.364 32.000 0.00 0.00 38.01 2.90
1989 2015 7.391554 AGAAATTCAGATCGGTTGAAATTCAGA 59.608 33.333 18.70 0.00 42.64 3.27
1990 2016 7.533426 AGAAATTCAGATCGGTTGAAATTCAG 58.467 34.615 18.70 0.00 42.64 3.02
1992 2018 7.483059 GTGAGAAATTCAGATCGGTTGAAATTC 59.517 37.037 12.68 12.68 41.46 2.17
2092 2255 2.555547 GGCCACTTGCAAGAACGCT 61.556 57.895 32.50 7.10 43.89 5.07
2135 2318 6.318648 TGAAAACGGTCGTAGTAGTACCATAT 59.681 38.462 2.06 0.00 32.55 1.78
2165 2350 5.738225 CGAGATTACACGACCTCTTTTACTC 59.262 44.000 0.00 0.00 32.29 2.59
2211 2396 1.067582 CCGGAAGCCATCGTAGTCC 59.932 63.158 0.00 0.00 0.00 3.85
2565 2753 3.898517 TCGTGATGTCCGATACTCATC 57.101 47.619 0.00 0.00 38.57 2.92
2631 2824 8.989980 CGTACTTCTTTTTGTTTTCTCCTATCT 58.010 33.333 0.00 0.00 0.00 1.98
2632 2825 8.771766 ACGTACTTCTTTTTGTTTTCTCCTATC 58.228 33.333 0.00 0.00 0.00 2.08
2633 2826 8.672823 ACGTACTTCTTTTTGTTTTCTCCTAT 57.327 30.769 0.00 0.00 0.00 2.57
2634 2827 7.225341 GGACGTACTTCTTTTTGTTTTCTCCTA 59.775 37.037 0.00 0.00 0.00 2.94
2635 2828 6.037940 GGACGTACTTCTTTTTGTTTTCTCCT 59.962 38.462 0.00 0.00 0.00 3.69
2636 2829 6.197276 GGACGTACTTCTTTTTGTTTTCTCC 58.803 40.000 0.00 0.00 0.00 3.71
2637 2830 6.183360 TGGGACGTACTTCTTTTTGTTTTCTC 60.183 38.462 0.00 0.00 0.00 2.87
2638 2831 5.648960 TGGGACGTACTTCTTTTTGTTTTCT 59.351 36.000 0.00 0.00 0.00 2.52
2639 2832 5.740569 GTGGGACGTACTTCTTTTTGTTTTC 59.259 40.000 0.00 0.00 0.00 2.29
2640 2833 5.416639 AGTGGGACGTACTTCTTTTTGTTTT 59.583 36.000 0.00 0.00 0.00 2.43
2641 2834 4.945543 AGTGGGACGTACTTCTTTTTGTTT 59.054 37.500 0.00 0.00 0.00 2.83
2642 2835 4.520179 AGTGGGACGTACTTCTTTTTGTT 58.480 39.130 0.00 0.00 0.00 2.83
2643 2836 4.146745 AGTGGGACGTACTTCTTTTTGT 57.853 40.909 0.00 0.00 0.00 2.83
2644 2837 5.270853 CAAAGTGGGACGTACTTCTTTTTG 58.729 41.667 14.59 8.06 37.39 2.44
2645 2838 4.201980 GCAAAGTGGGACGTACTTCTTTTT 60.202 41.667 14.59 0.95 37.39 1.94
2646 2839 3.314357 GCAAAGTGGGACGTACTTCTTTT 59.686 43.478 14.59 2.39 37.39 2.27
2647 2840 2.876550 GCAAAGTGGGACGTACTTCTTT 59.123 45.455 12.47 12.47 37.39 2.52
2648 2841 2.490991 GCAAAGTGGGACGTACTTCTT 58.509 47.619 0.00 0.00 37.39 2.52
2649 2842 1.270678 GGCAAAGTGGGACGTACTTCT 60.271 52.381 0.00 0.00 37.39 2.85
2650 2843 1.154197 GGCAAAGTGGGACGTACTTC 58.846 55.000 0.00 0.00 37.39 3.01
2651 2844 0.470766 TGGCAAAGTGGGACGTACTT 59.529 50.000 0.00 0.00 39.92 2.24
2667 2860 0.598419 GGTTTTGCAACTGAGCTGGC 60.598 55.000 0.00 0.00 32.90 4.85
2706 2899 0.455633 CAACTTGCATCAAGCTCGGC 60.456 55.000 6.49 0.00 44.43 5.54
2720 2913 2.504367 GGTGGTGCATGTCTACAACTT 58.496 47.619 0.00 0.00 0.00 2.66
2864 3057 8.842280 ACATCAAACGACTAAAAGGAATTACAA 58.158 29.630 0.00 0.00 0.00 2.41
2866 3059 8.718734 AGACATCAAACGACTAAAAGGAATTAC 58.281 33.333 0.00 0.00 0.00 1.89
2887 3081 9.462606 CCCCTACTGACTTTTAAATTAAGACAT 57.537 33.333 0.00 0.00 29.57 3.06
2901 3095 4.482431 GGAGCCCCCTACTGACTT 57.518 61.111 0.00 0.00 0.00 3.01
2946 3302 2.789213 GCAAGCTCCTCTCTCCTTTTT 58.211 47.619 0.00 0.00 0.00 1.94
2984 3340 4.642429 GGCTCAACCTCTTCTCTAAACAA 58.358 43.478 0.00 0.00 34.51 2.83
2985 3341 3.306088 CGGCTCAACCTCTTCTCTAAACA 60.306 47.826 0.00 0.00 35.61 2.83
2989 3345 1.272536 ACCGGCTCAACCTCTTCTCTA 60.273 52.381 0.00 0.00 35.61 2.43
3022 3378 5.619086 CGCCTTCGATTTTTCCAACAAGTAT 60.619 40.000 0.00 0.00 38.10 2.12
3069 3425 2.681344 GCGGTTTAAGGGTCTATGTTGG 59.319 50.000 0.00 0.00 0.00 3.77
3079 3435 0.536460 ATATGCGGGCGGTTTAAGGG 60.536 55.000 0.00 0.00 0.00 3.95
3086 3442 4.602259 CGGACATATGCGGGCGGT 62.602 66.667 1.58 0.00 35.75 5.68
3108 3464 1.347707 GCCAAGATATCCGGACCATGA 59.652 52.381 6.12 0.00 0.00 3.07
3123 3479 3.020102 CGGAAAAGAATGCGCCAAG 57.980 52.632 4.18 0.00 0.00 3.61
3128 3484 2.123342 TGTTTTGCGGAAAAGAATGCG 58.877 42.857 15.57 0.00 37.19 4.73
3138 3536 1.327303 ATTTGCCTCTGTTTTGCGGA 58.673 45.000 0.00 0.00 0.00 5.54
3148 3546 2.149973 CAAAGCCCCTATTTGCCTCT 57.850 50.000 0.00 0.00 31.46 3.69
3191 3589 3.461773 AGGATGGTCAGACGCGGG 61.462 66.667 12.47 0.00 0.00 6.13
3196 3594 0.250513 GTGGGTCAGGATGGTCAGAC 59.749 60.000 0.00 0.00 36.16 3.51
3210 3608 1.144913 CCGATATGGATTTGGGTGGGT 59.855 52.381 0.00 0.00 42.00 4.51
3217 3616 5.536161 AGAAAATGGGACCGATATGGATTTG 59.464 40.000 0.00 0.00 42.00 2.32
3226 3625 3.449746 TTGGAAGAAAATGGGACCGAT 57.550 42.857 0.00 0.00 0.00 4.18
3262 3661 1.301677 GCGAGGAAGCAGAACAAGGG 61.302 60.000 0.00 0.00 37.05 3.95
3280 3679 4.554036 GTGGCGGAGGAGGATGGC 62.554 72.222 0.00 0.00 0.00 4.40
3281 3680 3.866582 GGTGGCGGAGGAGGATGG 61.867 72.222 0.00 0.00 0.00 3.51
3282 3681 4.227134 CGGTGGCGGAGGAGGATG 62.227 72.222 0.00 0.00 0.00 3.51
3298 3697 1.738099 CCAGAGAAGAACCGTGGCG 60.738 63.158 0.00 0.00 0.00 5.69
3299 3698 2.035442 GCCAGAGAAGAACCGTGGC 61.035 63.158 0.00 0.00 46.49 5.01
3300 3699 1.376037 GGCCAGAGAAGAACCGTGG 60.376 63.158 0.00 0.00 0.00 4.94
3301 3700 1.738099 CGGCCAGAGAAGAACCGTG 60.738 63.158 2.24 0.00 39.05 4.94
3302 3701 2.657237 CGGCCAGAGAAGAACCGT 59.343 61.111 2.24 0.00 39.05 4.83
3303 3702 2.125512 CCGGCCAGAGAAGAACCG 60.126 66.667 2.24 0.00 43.44 4.44
3304 3703 2.436824 GCCGGCCAGAGAAGAACC 60.437 66.667 18.11 0.00 0.00 3.62
3305 3704 2.035442 GTGCCGGCCAGAGAAGAAC 61.035 63.158 26.77 8.15 0.00 3.01
3306 3705 2.347490 GTGCCGGCCAGAGAAGAA 59.653 61.111 26.77 0.00 0.00 2.52
3307 3706 2.922503 TGTGCCGGCCAGAGAAGA 60.923 61.111 26.77 0.00 0.00 2.87
3308 3707 2.743928 GTGTGCCGGCCAGAGAAG 60.744 66.667 26.77 0.00 0.00 2.85
3309 3708 3.535629 CTGTGTGCCGGCCAGAGAA 62.536 63.158 27.24 6.99 0.00 2.87
3310 3709 4.007644 CTGTGTGCCGGCCAGAGA 62.008 66.667 27.24 12.68 0.00 3.10
3316 3715 4.424566 CAATGCCTGTGTGCCGGC 62.425 66.667 22.73 22.73 46.46 6.13
3317 3716 4.424566 GCAATGCCTGTGTGCCGG 62.425 66.667 0.00 0.00 31.94 6.13
3327 3726 4.114997 CGGTGGTTCGGCAATGCC 62.115 66.667 15.52 15.52 46.75 4.40
3328 3727 4.776647 GCGGTGGTTCGGCAATGC 62.777 66.667 0.00 0.00 41.17 3.56
3329 3728 3.361158 TGCGGTGGTTCGGCAATG 61.361 61.111 0.00 0.00 46.51 2.82
3334 3733 3.353836 CTGGTTGCGGTGGTTCGG 61.354 66.667 0.00 0.00 0.00 4.30
3335 3734 4.025401 GCTGGTTGCGGTGGTTCG 62.025 66.667 0.00 0.00 0.00 3.95
3336 3735 2.200170 GATGCTGGTTGCGGTGGTTC 62.200 60.000 0.00 0.00 46.63 3.62
3337 3736 2.203480 ATGCTGGTTGCGGTGGTT 60.203 55.556 0.00 0.00 46.63 3.67
3338 3737 2.672996 GATGCTGGTTGCGGTGGT 60.673 61.111 0.00 0.00 46.63 4.16
3339 3738 3.803082 CGATGCTGGTTGCGGTGG 61.803 66.667 0.00 0.00 46.63 4.61
3340 3739 2.741985 TCGATGCTGGTTGCGGTG 60.742 61.111 0.00 0.00 46.63 4.94
3341 3740 2.434884 CTCGATGCTGGTTGCGGT 60.435 61.111 0.00 0.00 46.63 5.68
3342 3741 3.869272 GCTCGATGCTGGTTGCGG 61.869 66.667 0.00 0.00 46.63 5.69
3343 3742 4.214383 CGCTCGATGCTGGTTGCG 62.214 66.667 0.00 0.00 46.63 4.85
3344 3743 4.527157 GCGCTCGATGCTGGTTGC 62.527 66.667 0.00 0.00 40.11 4.17
3345 3744 2.806856 GAGCGCTCGATGCTGGTTG 61.807 63.158 23.61 0.00 44.18 3.77
3346 3745 2.510238 GAGCGCTCGATGCTGGTT 60.510 61.111 23.61 0.00 44.18 3.67
3359 3758 2.695646 GTAAAAGGCGAGCGAGCG 59.304 61.111 0.00 0.00 38.18 5.03
3360 3759 1.804326 TCGTAAAAGGCGAGCGAGC 60.804 57.895 0.00 0.00 34.11 5.03
3361 3760 1.730593 CGTCGTAAAAGGCGAGCGAG 61.731 60.000 0.00 0.00 39.14 5.03
3362 3761 1.798725 CGTCGTAAAAGGCGAGCGA 60.799 57.895 0.00 0.00 39.14 4.93
3363 3762 2.687436 CGTCGTAAAAGGCGAGCG 59.313 61.111 0.00 0.00 39.14 5.03
3364 3763 3.078560 CCGTCGTAAAAGGCGAGC 58.921 61.111 0.00 0.00 39.14 5.03
3365 3764 3.078560 GCCGTCGTAAAAGGCGAG 58.921 61.111 0.00 0.00 42.82 5.03
3395 3794 3.834799 CTGCCTACGGACGGGTCC 61.835 72.222 7.82 7.82 46.18 4.46
3396 3795 3.834799 CCTGCCTACGGACGGGTC 61.835 72.222 0.00 0.00 0.00 4.46
3397 3796 3.286694 TACCTGCCTACGGACGGGT 62.287 63.158 10.97 10.97 0.00 5.28
3398 3797 2.440796 TACCTGCCTACGGACGGG 60.441 66.667 0.00 0.00 0.00 5.28
3399 3798 1.452651 TCTACCTGCCTACGGACGG 60.453 63.158 0.00 0.00 0.00 4.79
3400 3799 0.747283 AGTCTACCTGCCTACGGACG 60.747 60.000 0.00 0.00 0.00 4.79
3401 3800 1.023502 GAGTCTACCTGCCTACGGAC 58.976 60.000 0.00 0.00 0.00 4.79
3402 3801 0.917533 AGAGTCTACCTGCCTACGGA 59.082 55.000 0.00 0.00 0.00 4.69
3403 3802 1.025812 CAGAGTCTACCTGCCTACGG 58.974 60.000 0.00 0.00 0.00 4.02
3404 3803 1.671845 GACAGAGTCTACCTGCCTACG 59.328 57.143 0.00 0.00 35.14 3.51
3405 3804 2.025898 GGACAGAGTCTACCTGCCTAC 58.974 57.143 0.00 0.00 35.14 3.18
3406 3805 1.063867 GGGACAGAGTCTACCTGCCTA 60.064 57.143 13.09 0.00 35.14 3.93
3407 3806 0.324830 GGGACAGAGTCTACCTGCCT 60.325 60.000 13.09 0.00 35.14 4.75
3408 3807 1.331399 GGGGACAGAGTCTACCTGCC 61.331 65.000 13.09 5.02 35.14 4.85
3409 3808 1.331399 GGGGGACAGAGTCTACCTGC 61.331 65.000 13.09 1.27 35.14 4.85
3410 3809 0.336737 AGGGGGACAGAGTCTACCTG 59.663 60.000 13.09 0.00 37.30 4.00
3411 3810 0.336737 CAGGGGGACAGAGTCTACCT 59.663 60.000 13.09 7.15 38.44 3.08
3412 3811 1.331399 GCAGGGGGACAGAGTCTACC 61.331 65.000 0.00 0.00 32.47 3.18
3413 3812 1.331399 GGCAGGGGGACAGAGTCTAC 61.331 65.000 0.00 0.00 32.47 2.59
3414 3813 1.001760 GGCAGGGGGACAGAGTCTA 59.998 63.158 0.00 0.00 32.47 2.59
3415 3814 2.284995 GGCAGGGGGACAGAGTCT 60.285 66.667 0.00 0.00 32.47 3.24
3416 3815 3.775654 CGGCAGGGGGACAGAGTC 61.776 72.222 0.00 0.00 0.00 3.36
3417 3816 3.846405 TTCGGCAGGGGGACAGAGT 62.846 63.158 0.00 0.00 0.00 3.24
3418 3817 1.915078 AATTCGGCAGGGGGACAGAG 61.915 60.000 0.00 0.00 0.00 3.35
3419 3818 1.910580 GAATTCGGCAGGGGGACAGA 61.911 60.000 0.00 0.00 0.00 3.41
3420 3819 1.452108 GAATTCGGCAGGGGGACAG 60.452 63.158 0.00 0.00 0.00 3.51
3421 3820 2.674754 GAATTCGGCAGGGGGACA 59.325 61.111 0.00 0.00 0.00 4.02
3422 3821 2.513897 CGAATTCGGCAGGGGGAC 60.514 66.667 20.16 0.00 35.37 4.46
3423 3822 3.006728 ACGAATTCGGCAGGGGGA 61.007 61.111 29.79 0.00 44.95 4.81
3431 3830 2.534019 CCGCCATGGACGAATTCGG 61.534 63.158 29.79 17.54 44.95 4.30
3432 3831 1.762222 GACCGCCATGGACGAATTCG 61.762 60.000 25.64 25.64 42.00 3.34
3433 3832 0.742990 TGACCGCCATGGACGAATTC 60.743 55.000 24.22 17.84 42.00 2.17
3434 3833 1.024579 GTGACCGCCATGGACGAATT 61.025 55.000 24.22 11.70 42.00 2.17
3435 3834 1.449601 GTGACCGCCATGGACGAAT 60.450 57.895 24.22 14.62 42.00 3.34
3436 3835 2.047655 GTGACCGCCATGGACGAA 60.048 61.111 24.22 10.74 42.00 3.85
3437 3836 4.077184 GGTGACCGCCATGGACGA 62.077 66.667 24.22 7.12 42.00 4.20
3438 3837 4.386951 TGGTGACCGCCATGGACG 62.387 66.667 18.40 18.22 42.00 4.79
3439 3838 2.746277 GTGGTGACCGCCATGGAC 60.746 66.667 18.40 3.58 42.00 4.02
3440 3839 4.386951 CGTGGTGACCGCCATGGA 62.387 66.667 18.40 0.00 40.82 3.41
3448 3847 4.722700 ATGGCAGGCGTGGTGACC 62.723 66.667 8.72 0.00 0.00 4.02
3449 3848 3.434319 CATGGCAGGCGTGGTGAC 61.434 66.667 8.36 0.00 0.00 3.67
3450 3849 3.952508 ACATGGCAGGCGTGGTGA 61.953 61.111 19.79 0.00 0.00 4.02
3451 3850 3.740397 CACATGGCAGGCGTGGTG 61.740 66.667 19.79 11.59 0.00 4.17
3452 3851 3.790416 AACACATGGCAGGCGTGGT 62.790 57.895 19.79 11.81 34.91 4.16
3453 3852 2.981560 GAACACATGGCAGGCGTGG 61.982 63.158 19.79 11.22 34.91 4.94
3454 3853 2.562912 GAACACATGGCAGGCGTG 59.437 61.111 14.58 14.58 36.70 5.34
3455 3854 3.049674 CGAACACATGGCAGGCGT 61.050 61.111 0.00 0.00 0.00 5.68
3456 3855 3.803082 CCGAACACATGGCAGGCG 61.803 66.667 0.00 0.00 0.00 5.52
3457 3856 2.672996 ACCGAACACATGGCAGGC 60.673 61.111 0.00 0.00 0.00 4.85
3458 3857 0.888736 TTGACCGAACACATGGCAGG 60.889 55.000 0.00 0.00 0.00 4.85
3459 3858 0.950836 TTTGACCGAACACATGGCAG 59.049 50.000 0.00 0.00 0.00 4.85
3460 3859 1.269174 CATTTGACCGAACACATGGCA 59.731 47.619 0.00 0.00 0.00 4.92
3461 3860 1.981254 CATTTGACCGAACACATGGC 58.019 50.000 0.00 0.00 0.00 4.40
3462 3861 1.402720 GGCATTTGACCGAACACATGG 60.403 52.381 0.00 0.00 31.25 3.66
3463 3862 1.269174 TGGCATTTGACCGAACACATG 59.731 47.619 0.00 0.00 32.99 3.21
3464 3863 1.614996 TGGCATTTGACCGAACACAT 58.385 45.000 0.00 0.00 0.00 3.21
3465 3864 1.614996 ATGGCATTTGACCGAACACA 58.385 45.000 0.00 0.00 0.00 3.72
3466 3865 2.030363 TCAATGGCATTTGACCGAACAC 60.030 45.455 10.65 0.00 30.82 3.32
3467 3866 2.228582 CTCAATGGCATTTGACCGAACA 59.771 45.455 10.65 0.00 32.39 3.18
3468 3867 2.867429 CTCAATGGCATTTGACCGAAC 58.133 47.619 10.65 0.00 32.39 3.95
3469 3868 1.202114 GCTCAATGGCATTTGACCGAA 59.798 47.619 10.65 0.00 32.39 4.30
3470 3869 0.810648 GCTCAATGGCATTTGACCGA 59.189 50.000 10.65 3.51 32.39 4.69
3471 3870 0.813184 AGCTCAATGGCATTTGACCG 59.187 50.000 10.65 0.00 32.39 4.79
3472 3871 4.660789 ATAAGCTCAATGGCATTTGACC 57.339 40.909 10.65 3.81 32.39 4.02
3473 3872 5.899299 AGAATAAGCTCAATGGCATTTGAC 58.101 37.500 10.65 2.50 32.39 3.18
3474 3873 5.653330 TGAGAATAAGCTCAATGGCATTTGA 59.347 36.000 10.65 10.55 41.65 2.69
3475 3874 5.898174 TGAGAATAAGCTCAATGGCATTTG 58.102 37.500 10.65 7.75 41.65 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.