Multiple sequence alignment - TraesCS4D01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G214400 chr4D 100.000 5700 0 0 1 5700 367755818 367750119 0.000000e+00 10527.0
1 TraesCS4D01G214400 chr4D 82.532 395 62 6 79 467 343063010 343063403 1.970000e-89 340.0
2 TraesCS4D01G214400 chr4B 97.965 2162 32 6 869 3020 452735460 452733301 0.000000e+00 3738.0
3 TraesCS4D01G214400 chr4B 96.351 2220 62 9 3109 5325 452733034 452730831 0.000000e+00 3633.0
4 TraesCS4D01G214400 chr4B 90.048 623 47 11 263 881 452736103 452735492 0.000000e+00 793.0
5 TraesCS4D01G214400 chr4B 87.360 356 25 11 5345 5700 452730840 452730505 1.930000e-104 390.0
6 TraesCS4D01G214400 chr4A 95.322 1582 52 9 929 2498 97373948 97375519 0.000000e+00 2492.0
7 TraesCS4D01G214400 chr4A 93.153 1592 85 12 3178 4751 97376421 97378006 0.000000e+00 2314.0
8 TraesCS4D01G214400 chr4A 94.805 539 25 3 2489 3024 97375891 97376429 0.000000e+00 837.0
9 TraesCS4D01G214400 chr4A 94.118 340 17 2 464 800 97373582 97373921 1.100000e-141 514.0
10 TraesCS4D01G214400 chr4A 100.000 36 0 0 2520 2555 97375905 97375870 3.690000e-07 67.6
11 TraesCS4D01G214400 chr6D 93.506 385 24 1 4335 4718 211548775 211548391 6.410000e-159 571.0
12 TraesCS4D01G214400 chr6D 82.000 100 12 3 19 112 127949811 127949712 4.730000e-11 80.5
13 TraesCS4D01G214400 chr6D 81.553 103 13 3 16 112 428781442 428781544 4.730000e-11 80.5
14 TraesCS4D01G214400 chr5D 81.210 463 78 8 19 473 401391503 401391042 1.170000e-96 364.0
15 TraesCS4D01G214400 chr5D 81.731 104 11 5 16 112 283564635 283564737 4.730000e-11 80.5
16 TraesCS4D01G214400 chr5B 83.459 399 58 8 75 467 308539500 308539896 1.170000e-96 364.0
17 TraesCS4D01G214400 chr5B 82.308 390 61 6 79 465 423354549 423354933 1.180000e-86 331.0
18 TraesCS4D01G214400 chr1D 86.217 341 42 5 79 415 33634334 33634673 1.170000e-96 364.0
19 TraesCS4D01G214400 chr1D 82.524 103 12 3 16 112 455415692 455415794 1.020000e-12 86.1
20 TraesCS4D01G214400 chr1D 81.553 103 13 3 16 112 25268127 25268229 4.730000e-11 80.5
21 TraesCS4D01G214400 chr1D 91.379 58 3 2 5610 5666 390403916 390403860 1.700000e-10 78.7
22 TraesCS4D01G214400 chr3D 82.828 396 61 6 79 468 114079041 114078647 1.180000e-91 348.0
23 TraesCS4D01G214400 chr3D 79.221 154 32 0 5541 5694 49036697 49036850 2.170000e-19 108.0
24 TraesCS4D01G214400 chr3D 81.553 103 13 3 16 112 91156585 91156687 4.730000e-11 80.5
25 TraesCS4D01G214400 chr3D 84.375 64 10 0 5151 5214 568500963 568500900 4.770000e-06 63.9
26 TraesCS4D01G214400 chr2D 82.785 395 61 6 79 467 50948681 50949074 4.230000e-91 346.0
27 TraesCS4D01G214400 chr2D 82.524 103 12 3 16 112 359819742 359819844 1.020000e-12 86.1
28 TraesCS4D01G214400 chr7A 83.740 369 51 8 79 441 642590472 642590837 1.970000e-89 340.0
29 TraesCS4D01G214400 chr7D 82.188 393 62 7 79 465 572872922 572872532 1.180000e-86 331.0
30 TraesCS4D01G214400 chr7D 81.553 103 13 3 16 112 136485761 136485863 4.730000e-11 80.5
31 TraesCS4D01G214400 chr1B 81.208 149 27 1 5547 5695 497375425 497375278 1.000000e-22 119.0
32 TraesCS4D01G214400 chr1B 100.000 28 0 0 5181 5208 530984252 530984279 1.000000e-02 52.8
33 TraesCS4D01G214400 chr1A 81.395 129 24 0 5541 5669 534411111 534410983 7.810000e-19 106.0
34 TraesCS4D01G214400 chr3A 96.875 32 1 0 5273 5304 12924609 12924578 3.000000e-03 54.7
35 TraesCS4D01G214400 chr5A 100.000 28 0 0 2515 2542 433496813 433496840 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G214400 chr4D 367750119 367755818 5699 True 10527.00 10527 100.0000 1 5700 1 chr4D.!!$R1 5699
1 TraesCS4D01G214400 chr4B 452730505 452736103 5598 True 2138.50 3738 92.9310 263 5700 4 chr4B.!!$R1 5437
2 TraesCS4D01G214400 chr4A 97373582 97378006 4424 False 1539.25 2492 94.3495 464 4751 4 chr4A.!!$F1 4287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.028902 ACGTTTCTTGGCTTTCACGC 59.971 50.000 0.00 0.0 0.00 5.34 F
326 328 0.034896 TCTTGCAAACCTCCGGACTC 59.965 55.000 0.00 0.0 0.00 3.36 F
398 400 0.110486 AGGTCAGCGTTGGATGGTTT 59.890 50.000 0.00 0.0 0.00 3.27 F
401 403 0.400213 TCAGCGTTGGATGGTTTCCT 59.600 50.000 0.00 0.0 45.68 3.36 F
403 405 0.673644 AGCGTTGGATGGTTTCCTCG 60.674 55.000 0.00 0.0 45.68 4.63 F
444 446 1.072505 GGTTGCGGGAGGTTTGAGA 59.927 57.895 0.00 0.0 0.00 3.27 F
1005 1058 1.073923 GAACTTGAAGGGGAAGCAGGA 59.926 52.381 0.00 0.0 0.00 3.86 F
1628 1690 1.079057 GGCCTCTCAGGTTCGTTCC 60.079 63.158 0.00 0.0 37.80 3.62 F
3112 3742 2.154462 GCATATGTCGGAATGGAAGGG 58.846 52.381 4.29 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1690 0.392193 AGGTGAATCGAGCAAGCAGG 60.392 55.000 0.00 0.00 0.00 4.85 R
1981 2049 3.482156 AAAGCTCATCATCATAGCCGT 57.518 42.857 0.00 0.00 36.92 5.68 R
2498 2947 1.331161 CGAAATATGTGTCGCTGACGC 60.331 52.381 13.07 13.07 42.60 5.19 R
2580 3031 8.592998 CGAACTATCAGTTACAAGGTAAACATC 58.407 37.037 0.00 0.00 38.80 3.06 R
3031 3483 5.889289 GCCCAACCAAGTTATATTCCTTACA 59.111 40.000 0.00 0.00 0.00 2.41 R
3047 3499 2.650322 TCCCATAAGTTTAGCCCAACCA 59.350 45.455 0.00 0.00 0.00 3.67 R
3095 3547 0.472471 GGCCCTTCCATTCCGACATA 59.528 55.000 0.00 0.00 34.01 2.29 R
4024 4659 0.106708 TCGCTTGAAGTCTTGCCTGT 59.893 50.000 0.00 0.00 0.00 4.00 R
5474 6134 0.108138 AGAATGCCGTAGTCACTGCC 60.108 55.000 0.00 0.00 34.26 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.312102 GCATATTTCCTTCAGCCCGC 59.688 55.000 0.00 0.00 0.00 6.13
20 21 0.954452 CATATTTCCTTCAGCCCGCC 59.046 55.000 0.00 0.00 0.00 6.13
21 22 0.178990 ATATTTCCTTCAGCCCGCCC 60.179 55.000 0.00 0.00 0.00 6.13
22 23 2.602746 TATTTCCTTCAGCCCGCCCG 62.603 60.000 0.00 0.00 0.00 6.13
39 40 2.754648 CGCTCATGAACGGACATGT 58.245 52.632 10.66 0.00 45.21 3.21
40 41 0.371301 CGCTCATGAACGGACATGTG 59.629 55.000 10.66 17.26 45.21 3.21
41 42 0.729116 GCTCATGAACGGACATGTGG 59.271 55.000 1.15 14.59 45.21 4.17
42 43 0.729116 CTCATGAACGGACATGTGGC 59.271 55.000 1.15 0.00 45.21 5.01
43 44 0.036022 TCATGAACGGACATGTGGCA 59.964 50.000 1.15 0.00 45.21 4.92
44 45 0.448990 CATGAACGGACATGTGGCAG 59.551 55.000 1.15 0.00 41.59 4.85
45 46 0.677731 ATGAACGGACATGTGGCAGG 60.678 55.000 1.15 0.00 0.00 4.85
46 47 1.003839 GAACGGACATGTGGCAGGA 60.004 57.895 1.15 0.00 0.00 3.86
47 48 1.003355 AACGGACATGTGGCAGGAG 60.003 57.895 1.15 0.00 0.00 3.69
48 49 1.768684 AACGGACATGTGGCAGGAGT 61.769 55.000 1.15 0.00 0.00 3.85
49 50 0.902984 ACGGACATGTGGCAGGAGTA 60.903 55.000 1.15 0.00 0.00 2.59
50 51 0.460284 CGGACATGTGGCAGGAGTAC 60.460 60.000 1.15 0.00 0.00 2.73
51 52 0.460284 GGACATGTGGCAGGAGTACG 60.460 60.000 1.15 0.00 0.00 3.67
52 53 0.246635 GACATGTGGCAGGAGTACGT 59.753 55.000 1.15 0.00 0.00 3.57
53 54 0.685097 ACATGTGGCAGGAGTACGTT 59.315 50.000 0.00 0.00 0.00 3.99
54 55 1.071699 ACATGTGGCAGGAGTACGTTT 59.928 47.619 0.00 0.00 0.00 3.60
55 56 1.732259 CATGTGGCAGGAGTACGTTTC 59.268 52.381 0.00 0.00 0.00 2.78
56 57 1.045407 TGTGGCAGGAGTACGTTTCT 58.955 50.000 0.00 0.00 0.00 2.52
57 58 1.414919 TGTGGCAGGAGTACGTTTCTT 59.585 47.619 0.00 0.00 0.00 2.52
58 59 1.798813 GTGGCAGGAGTACGTTTCTTG 59.201 52.381 0.00 0.00 0.00 3.02
59 60 1.270625 TGGCAGGAGTACGTTTCTTGG 60.271 52.381 11.85 0.77 0.00 3.61
60 61 0.796927 GCAGGAGTACGTTTCTTGGC 59.203 55.000 11.85 5.57 0.00 4.52
61 62 1.608283 GCAGGAGTACGTTTCTTGGCT 60.608 52.381 11.85 0.00 0.00 4.75
62 63 2.767505 CAGGAGTACGTTTCTTGGCTT 58.232 47.619 0.00 0.00 0.00 4.35
63 64 3.139077 CAGGAGTACGTTTCTTGGCTTT 58.861 45.455 0.00 0.00 0.00 3.51
64 65 3.186613 CAGGAGTACGTTTCTTGGCTTTC 59.813 47.826 0.00 0.00 0.00 2.62
65 66 3.135994 GGAGTACGTTTCTTGGCTTTCA 58.864 45.455 0.00 0.00 0.00 2.69
66 67 3.059120 GGAGTACGTTTCTTGGCTTTCAC 60.059 47.826 0.00 0.00 0.00 3.18
67 68 2.542595 AGTACGTTTCTTGGCTTTCACG 59.457 45.455 0.00 0.00 0.00 4.35
68 69 0.028902 ACGTTTCTTGGCTTTCACGC 59.971 50.000 0.00 0.00 0.00 5.34
69 70 0.991770 CGTTTCTTGGCTTTCACGCG 60.992 55.000 3.53 3.53 0.00 6.01
70 71 0.660300 GTTTCTTGGCTTTCACGCGG 60.660 55.000 12.47 0.00 0.00 6.46
71 72 1.791103 TTTCTTGGCTTTCACGCGGG 61.791 55.000 12.47 6.51 0.00 6.13
72 73 2.951475 TTCTTGGCTTTCACGCGGGT 62.951 55.000 8.89 0.00 0.00 5.28
73 74 2.517402 TTGGCTTTCACGCGGGTT 60.517 55.556 8.89 0.00 0.00 4.11
74 75 2.070654 CTTGGCTTTCACGCGGGTTT 62.071 55.000 8.89 0.00 0.00 3.27
75 76 0.818445 TTGGCTTTCACGCGGGTTTA 60.818 50.000 8.89 0.00 0.00 2.01
76 77 1.231958 TGGCTTTCACGCGGGTTTAG 61.232 55.000 8.89 5.46 0.00 1.85
77 78 1.232621 GGCTTTCACGCGGGTTTAGT 61.233 55.000 8.89 0.00 0.00 2.24
78 79 0.110373 GCTTTCACGCGGGTTTAGTG 60.110 55.000 8.89 0.00 37.24 2.74
79 80 0.515564 CTTTCACGCGGGTTTAGTGG 59.484 55.000 8.89 0.00 36.60 4.00
80 81 0.106335 TTTCACGCGGGTTTAGTGGA 59.894 50.000 8.89 0.00 36.60 4.02
81 82 0.320073 TTCACGCGGGTTTAGTGGAG 60.320 55.000 8.89 0.00 36.60 3.86
82 83 1.740296 CACGCGGGTTTAGTGGAGG 60.740 63.158 12.47 0.00 32.68 4.30
83 84 2.818274 CGCGGGTTTAGTGGAGGC 60.818 66.667 0.00 0.00 0.00 4.70
84 85 2.818274 GCGGGTTTAGTGGAGGCG 60.818 66.667 0.00 0.00 0.00 5.52
85 86 2.660802 CGGGTTTAGTGGAGGCGT 59.339 61.111 0.00 0.00 0.00 5.68
86 87 1.740296 CGGGTTTAGTGGAGGCGTG 60.740 63.158 0.00 0.00 0.00 5.34
87 88 1.373812 GGGTTTAGTGGAGGCGTGT 59.626 57.895 0.00 0.00 0.00 4.49
88 89 0.250597 GGGTTTAGTGGAGGCGTGTT 60.251 55.000 0.00 0.00 0.00 3.32
89 90 1.154197 GGTTTAGTGGAGGCGTGTTC 58.846 55.000 0.00 0.00 0.00 3.18
90 91 1.541670 GGTTTAGTGGAGGCGTGTTCA 60.542 52.381 0.00 0.00 0.00 3.18
91 92 1.798813 GTTTAGTGGAGGCGTGTTCAG 59.201 52.381 0.00 0.00 0.00 3.02
92 93 0.320421 TTAGTGGAGGCGTGTTCAGC 60.320 55.000 0.00 0.00 0.00 4.26
100 101 3.726517 CGTGTTCAGCCGGGCTTG 61.727 66.667 21.26 15.00 36.40 4.01
101 102 4.043200 GTGTTCAGCCGGGCTTGC 62.043 66.667 21.26 12.74 36.40 4.01
102 103 4.577677 TGTTCAGCCGGGCTTGCA 62.578 61.111 21.26 15.29 36.40 4.08
103 104 3.741476 GTTCAGCCGGGCTTGCAG 61.741 66.667 21.26 8.42 36.40 4.41
156 157 3.386237 GCGGAGGCAGTGAGAGGT 61.386 66.667 0.00 0.00 39.62 3.85
157 158 2.888863 CGGAGGCAGTGAGAGGTC 59.111 66.667 0.00 0.00 0.00 3.85
158 159 2.888863 GGAGGCAGTGAGAGGTCG 59.111 66.667 0.00 0.00 0.00 4.79
159 160 2.183046 GAGGCAGTGAGAGGTCGC 59.817 66.667 0.00 0.00 0.00 5.19
160 161 3.691744 GAGGCAGTGAGAGGTCGCG 62.692 68.421 0.00 0.00 38.32 5.87
161 162 4.057428 GGCAGTGAGAGGTCGCGT 62.057 66.667 5.77 0.00 38.32 6.01
162 163 2.505118 GCAGTGAGAGGTCGCGTC 60.505 66.667 5.77 0.00 38.32 5.19
163 164 2.179517 CAGTGAGAGGTCGCGTCC 59.820 66.667 14.89 14.89 38.32 4.79
164 165 3.432588 AGTGAGAGGTCGCGTCCG 61.433 66.667 16.59 0.00 38.32 4.79
181 182 4.722700 GCCCTGAGCCGCCTTCAA 62.723 66.667 0.00 0.00 34.35 2.69
182 183 2.273449 CCCTGAGCCGCCTTCAAT 59.727 61.111 0.00 0.00 0.00 2.57
183 184 2.117156 CCCTGAGCCGCCTTCAATG 61.117 63.158 0.00 0.00 0.00 2.82
184 185 2.768492 CCTGAGCCGCCTTCAATGC 61.768 63.158 0.00 0.00 0.00 3.56
212 213 4.521075 GCTCTACAGCGGCATGAA 57.479 55.556 1.45 0.00 35.39 2.57
213 214 2.997899 GCTCTACAGCGGCATGAAT 58.002 52.632 1.45 0.00 35.39 2.57
214 215 0.585357 GCTCTACAGCGGCATGAATG 59.415 55.000 1.45 0.00 35.39 2.67
215 216 3.315635 GCTCTACAGCGGCATGAATGC 62.316 57.143 6.73 6.73 43.87 3.56
260 261 3.097162 GCGGGAGGGGGAGGATTT 61.097 66.667 0.00 0.00 0.00 2.17
261 262 2.690734 GCGGGAGGGGGAGGATTTT 61.691 63.158 0.00 0.00 0.00 1.82
283 284 4.631740 TGGGTCAGGGCGGTCAGA 62.632 66.667 0.00 0.00 0.00 3.27
298 299 0.700564 TCAGAAGCAGGCTTGGGATT 59.299 50.000 11.85 0.00 36.26 3.01
299 300 0.815734 CAGAAGCAGGCTTGGGATTG 59.184 55.000 11.85 0.00 36.26 2.67
309 311 0.905357 CTTGGGATTGGTCGGACTCT 59.095 55.000 8.23 0.00 0.00 3.24
319 321 1.149148 GTCGGACTCTTGCAAACCTC 58.851 55.000 0.00 0.00 0.00 3.85
322 324 0.955919 GGACTCTTGCAAACCTCCGG 60.956 60.000 0.00 0.00 0.00 5.14
326 328 0.034896 TCTTGCAAACCTCCGGACTC 59.965 55.000 0.00 0.00 0.00 3.36
333 335 1.258676 AACCTCCGGACTCTTGTCTC 58.741 55.000 0.00 0.00 42.54 3.36
342 344 0.250338 ACTCTTGTCTCCGGTTTGCC 60.250 55.000 0.00 0.00 0.00 4.52
380 382 2.203070 GCCCTGCGGACCATACAG 60.203 66.667 0.00 0.00 0.00 2.74
391 393 2.767536 CCATACAGGTCAGCGTTGG 58.232 57.895 0.00 0.00 0.00 3.77
392 394 0.249120 CCATACAGGTCAGCGTTGGA 59.751 55.000 0.00 0.00 0.00 3.53
394 396 1.935873 CATACAGGTCAGCGTTGGATG 59.064 52.381 0.00 0.00 0.00 3.51
396 398 1.003355 CAGGTCAGCGTTGGATGGT 60.003 57.895 0.00 0.00 0.00 3.55
397 399 0.606401 CAGGTCAGCGTTGGATGGTT 60.606 55.000 0.00 0.00 0.00 3.67
398 400 0.110486 AGGTCAGCGTTGGATGGTTT 59.890 50.000 0.00 0.00 0.00 3.27
399 401 0.521735 GGTCAGCGTTGGATGGTTTC 59.478 55.000 0.00 0.00 0.00 2.78
400 402 0.521735 GTCAGCGTTGGATGGTTTCC 59.478 55.000 0.00 0.00 45.69 3.13
401 403 0.400213 TCAGCGTTGGATGGTTTCCT 59.600 50.000 0.00 0.00 45.68 3.36
402 404 0.804989 CAGCGTTGGATGGTTTCCTC 59.195 55.000 0.00 0.00 45.68 3.71
403 405 0.673644 AGCGTTGGATGGTTTCCTCG 60.674 55.000 0.00 0.00 45.68 4.63
405 407 2.012051 GCGTTGGATGGTTTCCTCGAT 61.012 52.381 11.59 0.00 45.68 3.59
406 408 1.933853 CGTTGGATGGTTTCCTCGATC 59.066 52.381 0.00 0.00 45.68 3.69
407 409 2.418746 CGTTGGATGGTTTCCTCGATCT 60.419 50.000 0.00 0.00 45.68 2.75
408 410 2.939103 GTTGGATGGTTTCCTCGATCTG 59.061 50.000 0.00 0.00 45.68 2.90
409 411 2.466846 TGGATGGTTTCCTCGATCTGA 58.533 47.619 0.00 0.00 45.68 3.27
410 412 2.837591 TGGATGGTTTCCTCGATCTGAA 59.162 45.455 0.00 0.00 45.68 3.02
411 413 3.198872 GGATGGTTTCCTCGATCTGAAC 58.801 50.000 0.00 0.00 41.78 3.18
412 414 3.369471 GGATGGTTTCCTCGATCTGAACA 60.369 47.826 0.00 0.00 41.78 3.18
413 415 3.762407 TGGTTTCCTCGATCTGAACAA 57.238 42.857 0.00 0.00 0.00 2.83
414 416 3.399330 TGGTTTCCTCGATCTGAACAAC 58.601 45.455 0.00 0.00 0.00 3.32
416 418 3.057734 GTTTCCTCGATCTGAACAACGT 58.942 45.455 0.00 0.00 0.00 3.99
418 420 4.508461 TTCCTCGATCTGAACAACGTAA 57.492 40.909 0.00 0.00 0.00 3.18
419 421 4.713824 TCCTCGATCTGAACAACGTAAT 57.286 40.909 0.00 0.00 0.00 1.89
420 422 5.068234 TCCTCGATCTGAACAACGTAATT 57.932 39.130 0.00 0.00 0.00 1.40
421 423 5.100259 TCCTCGATCTGAACAACGTAATTC 58.900 41.667 5.05 5.05 0.00 2.17
422 424 4.027621 CCTCGATCTGAACAACGTAATTCG 60.028 45.833 7.09 0.00 46.00 3.34
423 425 4.725359 TCGATCTGAACAACGTAATTCGA 58.275 39.130 7.09 7.55 42.86 3.71
424 426 5.155643 TCGATCTGAACAACGTAATTCGAA 58.844 37.500 0.00 0.00 42.86 3.71
425 427 5.803461 TCGATCTGAACAACGTAATTCGAAT 59.197 36.000 4.39 4.39 42.86 3.34
434 436 1.267832 CGTAATTCGAATGGTTGCGGG 60.268 52.381 12.25 0.00 42.86 6.13
444 446 1.072505 GGTTGCGGGAGGTTTGAGA 59.927 57.895 0.00 0.00 0.00 3.27
467 470 2.109126 GCGTTGGAGCTGCCCTAAG 61.109 63.158 1.53 0.00 34.97 2.18
736 742 6.070881 CCCCATCAATCAACTCAAATTAACCA 60.071 38.462 0.00 0.00 0.00 3.67
792 799 3.058085 GGAAAAACTAAAACGATGCCCGA 60.058 43.478 2.54 0.00 41.76 5.14
796 803 4.870221 AACTAAAACGATGCCCGAATAC 57.130 40.909 2.54 0.00 41.76 1.89
797 804 3.864243 ACTAAAACGATGCCCGAATACA 58.136 40.909 2.54 0.00 41.76 2.29
804 811 3.745975 ACGATGCCCGAATACATACATTG 59.254 43.478 2.54 0.00 41.76 2.82
809 816 7.519168 CGATGCCCGAATACATACATTGTTTAA 60.519 37.037 0.00 0.00 41.76 1.52
814 821 8.176365 CCCGAATACATACATTGTTTAAACGAA 58.824 33.333 12.26 8.64 39.87 3.85
1005 1058 1.073923 GAACTTGAAGGGGAAGCAGGA 59.926 52.381 0.00 0.00 0.00 3.86
1087 1140 3.570638 CGGCAGCAATCCAGCGAG 61.571 66.667 0.00 0.00 40.15 5.03
1090 1143 2.437180 CAGCAATCCAGCGAGGCA 60.437 61.111 0.00 0.00 40.15 4.75
1315 1368 4.801221 CGCTCGCTCGCCTTTTGC 62.801 66.667 0.00 0.00 0.00 3.68
1520 1582 3.031013 TGATCCGAGTCTAATGCTTCCA 58.969 45.455 0.00 0.00 0.00 3.53
1628 1690 1.079057 GGCCTCTCAGGTTCGTTCC 60.079 63.158 0.00 0.00 37.80 3.62
1686 1748 7.862873 CCTTGTTTTTCTTCTTCCTGTGAATAC 59.137 37.037 0.00 0.00 0.00 1.89
1687 1749 7.873719 TGTTTTTCTTCTTCCTGTGAATACA 57.126 32.000 0.00 0.00 35.08 2.29
1981 2049 7.386848 GCTCATACTGTGTGTTCTAAAAGGTTA 59.613 37.037 4.44 0.00 0.00 2.85
2498 2947 9.209175 GCTCATGTTACTATTAAGTAATCCCTG 57.791 37.037 1.66 0.00 46.98 4.45
2580 3031 6.318648 TCTTTTGAGGATTTTCGTGGATATGG 59.681 38.462 0.00 0.00 0.00 2.74
3054 3506 8.533569 AATGTAAGGAATATAACTTGGTTGGG 57.466 34.615 2.90 0.00 0.00 4.12
3055 3507 5.889289 TGTAAGGAATATAACTTGGTTGGGC 59.111 40.000 2.90 0.00 0.00 5.36
3056 3508 4.881157 AGGAATATAACTTGGTTGGGCT 57.119 40.909 0.00 0.00 0.00 5.19
3057 3509 5.987019 AGGAATATAACTTGGTTGGGCTA 57.013 39.130 0.00 0.00 0.00 3.93
3058 3510 6.335781 AGGAATATAACTTGGTTGGGCTAA 57.664 37.500 0.00 0.00 0.00 3.09
3059 3511 6.737608 AGGAATATAACTTGGTTGGGCTAAA 58.262 36.000 0.00 0.00 0.00 1.85
3060 3512 6.605995 AGGAATATAACTTGGTTGGGCTAAAC 59.394 38.462 0.00 0.00 0.00 2.01
3061 3513 6.605995 GGAATATAACTTGGTTGGGCTAAACT 59.394 38.462 0.00 0.00 0.00 2.66
3062 3514 7.123697 GGAATATAACTTGGTTGGGCTAAACTT 59.876 37.037 0.00 0.00 0.00 2.66
3063 3515 9.181061 GAATATAACTTGGTTGGGCTAAACTTA 57.819 33.333 0.00 0.00 0.00 2.24
3064 3516 9.709387 AATATAACTTGGTTGGGCTAAACTTAT 57.291 29.630 0.00 0.00 0.00 1.73
3065 3517 5.722021 AACTTGGTTGGGCTAAACTTATG 57.278 39.130 0.00 0.00 0.00 1.90
3066 3518 4.086457 ACTTGGTTGGGCTAAACTTATGG 58.914 43.478 0.00 0.00 0.00 2.74
3067 3519 3.094484 TGGTTGGGCTAAACTTATGGG 57.906 47.619 0.00 0.00 0.00 4.00
3068 3520 2.650322 TGGTTGGGCTAAACTTATGGGA 59.350 45.455 0.00 0.00 0.00 4.37
3069 3521 3.076182 TGGTTGGGCTAAACTTATGGGAA 59.924 43.478 0.00 0.00 0.00 3.97
3070 3522 4.090819 GGTTGGGCTAAACTTATGGGAAA 58.909 43.478 0.00 0.00 0.00 3.13
3071 3523 4.528987 GGTTGGGCTAAACTTATGGGAAAA 59.471 41.667 0.00 0.00 0.00 2.29
3072 3524 5.012251 GGTTGGGCTAAACTTATGGGAAAAA 59.988 40.000 0.00 0.00 0.00 1.94
3101 3553 8.854979 TTCCTATTTTGAATTTGCATATGTCG 57.145 30.769 4.29 0.00 0.00 4.35
3102 3554 7.424803 TCCTATTTTGAATTTGCATATGTCGG 58.575 34.615 4.29 0.00 0.00 4.79
3103 3555 7.284261 TCCTATTTTGAATTTGCATATGTCGGA 59.716 33.333 4.29 0.00 0.00 4.55
3104 3556 7.920151 CCTATTTTGAATTTGCATATGTCGGAA 59.080 33.333 4.29 0.00 0.00 4.30
3105 3557 9.467258 CTATTTTGAATTTGCATATGTCGGAAT 57.533 29.630 4.29 1.62 0.00 3.01
3106 3558 7.522901 TTTTGAATTTGCATATGTCGGAATG 57.477 32.000 4.29 0.00 0.00 2.67
3107 3559 5.185668 TGAATTTGCATATGTCGGAATGG 57.814 39.130 4.29 0.00 0.00 3.16
3112 3742 2.154462 GCATATGTCGGAATGGAAGGG 58.846 52.381 4.29 0.00 0.00 3.95
3156 3786 6.543831 GTCAGCATTACAGGACCAAGATAAAT 59.456 38.462 0.00 0.00 0.00 1.40
3221 3851 6.165577 AGGCACATAACAAATTCATGTTTCC 58.834 36.000 1.04 3.04 40.52 3.13
3447 4082 4.034510 AGTCTCTGTTTTTCGCACTTTCTG 59.965 41.667 0.00 0.00 0.00 3.02
3450 4085 5.054390 TCTGTTTTTCGCACTTTCTGTTT 57.946 34.783 0.00 0.00 0.00 2.83
4024 4659 5.123820 GTCAAACTGAACCATGCTTATGCTA 59.876 40.000 1.96 0.00 40.48 3.49
4106 4741 1.575244 ACGATCAGCCATCATTCGTG 58.425 50.000 0.00 0.00 41.09 4.35
4153 4795 3.682377 GCTTCAGTTCCTCTTTCTGCTAC 59.318 47.826 0.00 0.00 0.00 3.58
4160 4802 3.239449 TCCTCTTTCTGCTACCAAGTCA 58.761 45.455 0.00 0.00 0.00 3.41
4190 4832 6.920569 TCTCTTCCGGTTATTATTTCTTGC 57.079 37.500 0.00 0.00 0.00 4.01
4435 5077 3.479255 GAAGTTGCCTTCAAAGCCG 57.521 52.632 0.00 0.00 45.37 5.52
4597 5244 3.802948 ACGGTGACCACTATGATTCTC 57.197 47.619 1.11 0.00 0.00 2.87
4700 5347 8.919145 TGGAACATCAAAAATAAGTTGGTAGTT 58.081 29.630 0.00 0.00 0.00 2.24
4701 5348 9.406828 GGAACATCAAAAATAAGTTGGTAGTTC 57.593 33.333 0.00 0.00 34.46 3.01
4761 5408 7.117092 GGTTTTCTTTAGCTTGTGTTTGTTTCA 59.883 33.333 0.00 0.00 0.00 2.69
4820 5467 8.715998 AGCAATTACTTCAGCTTATCGATATTG 58.284 33.333 5.84 5.48 32.52 1.90
4821 5468 7.959651 GCAATTACTTCAGCTTATCGATATTGG 59.040 37.037 5.84 1.48 0.00 3.16
4830 5480 8.807118 TCAGCTTATCGATATTGGAAAGTATCT 58.193 33.333 5.84 0.00 0.00 1.98
4844 5494 7.782049 TGGAAAGTATCTATAACACCAGTGAG 58.218 38.462 4.48 0.00 0.00 3.51
4943 5593 8.567285 GAGAAAGAACTCCAGATGGAATTTAA 57.433 34.615 2.65 0.00 44.91 1.52
4944 5594 9.183368 GAGAAAGAACTCCAGATGGAATTTAAT 57.817 33.333 2.65 0.00 44.91 1.40
4967 5617 7.855784 ATTTGTCTTTTTGGGTATTCTTCCT 57.144 32.000 0.00 0.00 0.00 3.36
4968 5618 6.648879 TTGTCTTTTTGGGTATTCTTCCTG 57.351 37.500 0.00 0.00 0.00 3.86
4970 5620 4.767409 GTCTTTTTGGGTATTCTTCCTGCT 59.233 41.667 0.00 0.00 0.00 4.24
4974 5624 3.806949 TGGGTATTCTTCCTGCTTTGT 57.193 42.857 0.00 0.00 0.00 2.83
5190 5840 2.048316 CATGTTGGCCCCAAACGC 60.048 61.111 0.00 0.00 37.70 4.84
5224 5874 2.290071 CCCGGTCATTGTTTAGTCAGGT 60.290 50.000 0.00 0.00 0.00 4.00
5228 5878 5.293569 CCGGTCATTGTTTAGTCAGGTATTC 59.706 44.000 0.00 0.00 0.00 1.75
5237 5887 2.463752 AGTCAGGTATTCGCCACCTAA 58.536 47.619 2.62 0.00 44.81 2.69
5260 5910 1.000843 GGGTTGTGCTTTGGATTGTCC 59.999 52.381 0.00 0.00 36.96 4.02
5268 5918 2.354805 GCTTTGGATTGTCCGGTACTCT 60.355 50.000 0.00 0.00 40.17 3.24
5271 5921 2.531771 TGGATTGTCCGGTACTCTTCA 58.468 47.619 0.00 0.00 40.17 3.02
5289 5939 3.407424 TCATACTCAGCCCATATGTGC 57.593 47.619 1.40 1.40 0.00 4.57
5332 5982 4.692475 GCCCGCCACGTAGGTTGT 62.692 66.667 0.00 0.00 40.61 3.32
5333 5983 2.740826 CCCGCCACGTAGGTTGTG 60.741 66.667 0.00 0.00 40.61 3.33
5338 5988 2.740826 CACGTAGGTTGTGGCCCG 60.741 66.667 0.00 0.00 33.69 6.13
5339 5989 4.692475 ACGTAGGTTGTGGCCCGC 62.692 66.667 0.00 0.00 0.00 6.13
5340 5990 4.388499 CGTAGGTTGTGGCCCGCT 62.388 66.667 0.00 0.00 0.00 5.52
5341 5991 2.983791 GTAGGTTGTGGCCCGCTA 59.016 61.111 0.00 0.00 0.00 4.26
5342 5992 1.525442 GTAGGTTGTGGCCCGCTAT 59.475 57.895 0.00 0.00 0.00 2.97
5343 5993 0.814010 GTAGGTTGTGGCCCGCTATG 60.814 60.000 0.00 0.00 0.00 2.23
5344 5994 1.978455 TAGGTTGTGGCCCGCTATGG 61.978 60.000 0.00 0.00 37.55 2.74
5376 6026 1.402787 CCACAAATGCCCCACCTATC 58.597 55.000 0.00 0.00 0.00 2.08
5393 6043 4.081254 ACCTATCGGACAAAACCCTAGTTC 60.081 45.833 0.00 0.00 34.19 3.01
5394 6044 4.081309 CCTATCGGACAAAACCCTAGTTCA 60.081 45.833 0.00 0.00 34.19 3.18
5434 6084 1.127343 CTCAGTCTCCTCCCATTCCC 58.873 60.000 0.00 0.00 0.00 3.97
5465 6125 3.099170 CCCTCCCCTCCACCATGG 61.099 72.222 11.19 11.19 39.43 3.66
5472 6132 4.431131 CTCCACCATGGCCGGCTT 62.431 66.667 28.56 11.93 37.47 4.35
5484 6144 2.571757 CGGCTTCGGCAGTGACTA 59.428 61.111 0.00 0.00 43.96 2.59
5485 6145 1.805945 CGGCTTCGGCAGTGACTAC 60.806 63.158 0.00 0.00 43.96 2.73
5486 6146 1.805945 GGCTTCGGCAGTGACTACG 60.806 63.158 0.00 2.92 43.96 3.51
5487 6147 1.805945 GCTTCGGCAGTGACTACGG 60.806 63.158 8.62 0.00 41.33 4.02
5488 6148 1.805945 CTTCGGCAGTGACTACGGC 60.806 63.158 8.62 0.00 45.61 5.68
5493 6153 3.442996 GCAGTGACTACGGCATTCT 57.557 52.632 0.00 0.00 45.63 2.40
5494 6154 1.726853 GCAGTGACTACGGCATTCTT 58.273 50.000 0.00 0.00 45.63 2.52
5495 6155 2.076863 GCAGTGACTACGGCATTCTTT 58.923 47.619 0.00 0.00 45.63 2.52
5496 6156 2.159653 GCAGTGACTACGGCATTCTTTG 60.160 50.000 0.00 0.00 45.63 2.77
5497 6157 3.067106 CAGTGACTACGGCATTCTTTGT 58.933 45.455 0.00 0.00 0.00 2.83
5498 6158 3.123621 CAGTGACTACGGCATTCTTTGTC 59.876 47.826 0.00 0.00 0.00 3.18
5499 6159 2.415512 GTGACTACGGCATTCTTTGTCC 59.584 50.000 0.00 0.00 0.00 4.02
5500 6160 1.659098 GACTACGGCATTCTTTGTCCG 59.341 52.381 0.00 0.00 45.00 4.79
5501 6161 4.792087 ACGGCATTCTTTGTCCGT 57.208 50.000 0.00 0.00 46.39 4.69
5503 6163 1.794222 CGGCATTCTTTGTCCGTCC 59.206 57.895 0.00 0.00 39.01 4.79
5504 6164 0.953471 CGGCATTCTTTGTCCGTCCA 60.953 55.000 0.00 0.00 39.01 4.02
5505 6165 0.804989 GGCATTCTTTGTCCGTCCAG 59.195 55.000 0.00 0.00 0.00 3.86
5506 6166 1.610624 GGCATTCTTTGTCCGTCCAGA 60.611 52.381 0.00 0.00 0.00 3.86
5507 6167 2.359900 GCATTCTTTGTCCGTCCAGAT 58.640 47.619 0.00 0.00 0.00 2.90
5508 6168 2.352960 GCATTCTTTGTCCGTCCAGATC 59.647 50.000 0.00 0.00 0.00 2.75
5509 6169 3.599343 CATTCTTTGTCCGTCCAGATCA 58.401 45.455 0.00 0.00 0.00 2.92
5510 6170 2.743636 TCTTTGTCCGTCCAGATCAC 57.256 50.000 0.00 0.00 0.00 3.06
5511 6171 1.067846 TCTTTGTCCGTCCAGATCACG 60.068 52.381 0.00 0.00 36.99 4.35
5562 6222 1.678123 CCTGAAGGAGGACGACTACGA 60.678 57.143 0.00 0.00 46.33 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.312102 GCGGGCTGAAGGAAATATGC 59.688 55.000 0.00 0.00 0.00 3.14
1 2 0.954452 GGCGGGCTGAAGGAAATATG 59.046 55.000 0.00 0.00 0.00 1.78
2 3 0.178990 GGGCGGGCTGAAGGAAATAT 60.179 55.000 0.00 0.00 0.00 1.28
3 4 1.226262 GGGCGGGCTGAAGGAAATA 59.774 57.895 0.00 0.00 0.00 1.40
4 5 2.043953 GGGCGGGCTGAAGGAAAT 60.044 61.111 0.00 0.00 0.00 2.17
5 6 4.715523 CGGGCGGGCTGAAGGAAA 62.716 66.667 3.99 0.00 0.00 3.13
21 22 0.371301 CACATGTCCGTTCATGAGCG 59.629 55.000 23.26 23.26 45.41 5.03
22 23 0.729116 CCACATGTCCGTTCATGAGC 59.271 55.000 19.10 0.00 45.41 4.26
23 24 0.729116 GCCACATGTCCGTTCATGAG 59.271 55.000 19.10 13.06 45.41 2.90
24 25 0.036022 TGCCACATGTCCGTTCATGA 59.964 50.000 19.10 0.00 45.41 3.07
26 27 0.677731 CCTGCCACATGTCCGTTCAT 60.678 55.000 0.00 0.00 0.00 2.57
27 28 1.302431 CCTGCCACATGTCCGTTCA 60.302 57.895 0.00 0.00 0.00 3.18
28 29 1.003839 TCCTGCCACATGTCCGTTC 60.004 57.895 0.00 0.00 0.00 3.95
29 30 1.003355 CTCCTGCCACATGTCCGTT 60.003 57.895 0.00 0.00 0.00 4.44
30 31 0.902984 TACTCCTGCCACATGTCCGT 60.903 55.000 0.00 0.00 0.00 4.69
31 32 0.460284 GTACTCCTGCCACATGTCCG 60.460 60.000 0.00 0.00 0.00 4.79
32 33 0.460284 CGTACTCCTGCCACATGTCC 60.460 60.000 0.00 0.00 0.00 4.02
33 34 0.246635 ACGTACTCCTGCCACATGTC 59.753 55.000 0.00 0.00 0.00 3.06
34 35 0.685097 AACGTACTCCTGCCACATGT 59.315 50.000 0.00 0.00 0.00 3.21
35 36 1.732259 GAAACGTACTCCTGCCACATG 59.268 52.381 0.00 0.00 0.00 3.21
36 37 1.623811 AGAAACGTACTCCTGCCACAT 59.376 47.619 0.00 0.00 0.00 3.21
37 38 1.045407 AGAAACGTACTCCTGCCACA 58.955 50.000 0.00 0.00 0.00 4.17
38 39 1.798813 CAAGAAACGTACTCCTGCCAC 59.201 52.381 0.00 0.00 0.00 5.01
39 40 1.270625 CCAAGAAACGTACTCCTGCCA 60.271 52.381 0.00 0.00 0.00 4.92
40 41 1.439679 CCAAGAAACGTACTCCTGCC 58.560 55.000 0.00 0.00 0.00 4.85
41 42 0.796927 GCCAAGAAACGTACTCCTGC 59.203 55.000 0.00 0.00 0.00 4.85
42 43 2.457366 AGCCAAGAAACGTACTCCTG 57.543 50.000 0.00 0.00 0.00 3.86
43 44 3.181458 TGAAAGCCAAGAAACGTACTCCT 60.181 43.478 0.00 0.00 0.00 3.69
44 45 3.059120 GTGAAAGCCAAGAAACGTACTCC 60.059 47.826 0.00 0.00 0.00 3.85
45 46 3.362693 CGTGAAAGCCAAGAAACGTACTC 60.363 47.826 0.00 0.00 0.00 2.59
46 47 2.542595 CGTGAAAGCCAAGAAACGTACT 59.457 45.455 0.00 0.00 0.00 2.73
47 48 2.899977 CGTGAAAGCCAAGAAACGTAC 58.100 47.619 0.00 0.00 0.00 3.67
48 49 1.262151 GCGTGAAAGCCAAGAAACGTA 59.738 47.619 0.00 0.00 33.76 3.57
49 50 0.028902 GCGTGAAAGCCAAGAAACGT 59.971 50.000 0.00 0.00 33.76 3.99
50 51 0.991770 CGCGTGAAAGCCAAGAAACG 60.992 55.000 0.00 0.00 0.00 3.60
51 52 0.660300 CCGCGTGAAAGCCAAGAAAC 60.660 55.000 4.92 0.00 0.00 2.78
52 53 1.652012 CCGCGTGAAAGCCAAGAAA 59.348 52.632 4.92 0.00 0.00 2.52
53 54 2.258013 CCCGCGTGAAAGCCAAGAA 61.258 57.895 4.92 0.00 0.00 2.52
54 55 2.668212 CCCGCGTGAAAGCCAAGA 60.668 61.111 4.92 0.00 0.00 3.02
55 56 2.070654 AAACCCGCGTGAAAGCCAAG 62.071 55.000 4.92 0.00 0.00 3.61
56 57 0.818445 TAAACCCGCGTGAAAGCCAA 60.818 50.000 4.92 0.00 0.00 4.52
57 58 1.227883 TAAACCCGCGTGAAAGCCA 60.228 52.632 4.92 0.00 0.00 4.75
58 59 1.232621 ACTAAACCCGCGTGAAAGCC 61.233 55.000 4.92 0.00 0.00 4.35
59 60 0.110373 CACTAAACCCGCGTGAAAGC 60.110 55.000 4.92 0.00 0.00 3.51
60 61 0.515564 CCACTAAACCCGCGTGAAAG 59.484 55.000 4.92 0.00 0.00 2.62
61 62 0.106335 TCCACTAAACCCGCGTGAAA 59.894 50.000 4.92 0.00 0.00 2.69
62 63 0.320073 CTCCACTAAACCCGCGTGAA 60.320 55.000 4.92 0.00 0.00 3.18
63 64 1.290955 CTCCACTAAACCCGCGTGA 59.709 57.895 4.92 0.00 0.00 4.35
64 65 1.740296 CCTCCACTAAACCCGCGTG 60.740 63.158 4.92 0.00 0.00 5.34
65 66 2.660802 CCTCCACTAAACCCGCGT 59.339 61.111 4.92 0.00 0.00 6.01
66 67 2.818274 GCCTCCACTAAACCCGCG 60.818 66.667 0.00 0.00 0.00 6.46
67 68 2.818274 CGCCTCCACTAAACCCGC 60.818 66.667 0.00 0.00 0.00 6.13
68 69 1.740296 CACGCCTCCACTAAACCCG 60.740 63.158 0.00 0.00 0.00 5.28
69 70 0.250597 AACACGCCTCCACTAAACCC 60.251 55.000 0.00 0.00 0.00 4.11
70 71 1.154197 GAACACGCCTCCACTAAACC 58.846 55.000 0.00 0.00 0.00 3.27
71 72 1.798813 CTGAACACGCCTCCACTAAAC 59.201 52.381 0.00 0.00 0.00 2.01
72 73 1.876416 GCTGAACACGCCTCCACTAAA 60.876 52.381 0.00 0.00 0.00 1.85
73 74 0.320421 GCTGAACACGCCTCCACTAA 60.320 55.000 0.00 0.00 0.00 2.24
74 75 1.292223 GCTGAACACGCCTCCACTA 59.708 57.895 0.00 0.00 0.00 2.74
75 76 2.031163 GCTGAACACGCCTCCACT 59.969 61.111 0.00 0.00 0.00 4.00
76 77 3.050275 GGCTGAACACGCCTCCAC 61.050 66.667 0.00 0.00 44.17 4.02
77 78 4.680237 CGGCTGAACACGCCTCCA 62.680 66.667 11.27 0.00 45.37 3.86
83 84 3.726517 CAAGCCCGGCTGAACACG 61.727 66.667 14.19 0.00 39.62 4.49
84 85 4.043200 GCAAGCCCGGCTGAACAC 62.043 66.667 14.19 0.00 39.62 3.32
85 86 4.577677 TGCAAGCCCGGCTGAACA 62.578 61.111 14.19 8.95 39.62 3.18
86 87 3.741476 CTGCAAGCCCGGCTGAAC 61.741 66.667 14.19 6.16 39.62 3.18
130 131 2.751436 TGCCTCCGCCATTGAAGC 60.751 61.111 0.00 0.00 0.00 3.86
131 132 1.377725 ACTGCCTCCGCCATTGAAG 60.378 57.895 0.00 0.00 0.00 3.02
132 133 1.675310 CACTGCCTCCGCCATTGAA 60.675 57.895 0.00 0.00 0.00 2.69
133 134 2.046023 CACTGCCTCCGCCATTGA 60.046 61.111 0.00 0.00 0.00 2.57
134 135 2.046023 TCACTGCCTCCGCCATTG 60.046 61.111 0.00 0.00 0.00 2.82
135 136 2.249413 CTCTCACTGCCTCCGCCATT 62.249 60.000 0.00 0.00 0.00 3.16
136 137 2.685017 TCTCACTGCCTCCGCCAT 60.685 61.111 0.00 0.00 0.00 4.40
137 138 3.385384 CTCTCACTGCCTCCGCCA 61.385 66.667 0.00 0.00 0.00 5.69
138 139 4.154347 CCTCTCACTGCCTCCGCC 62.154 72.222 0.00 0.00 0.00 6.13
139 140 3.363844 GACCTCTCACTGCCTCCGC 62.364 68.421 0.00 0.00 0.00 5.54
140 141 2.888863 GACCTCTCACTGCCTCCG 59.111 66.667 0.00 0.00 0.00 4.63
141 142 2.888863 CGACCTCTCACTGCCTCC 59.111 66.667 0.00 0.00 0.00 4.30
142 143 2.183046 GCGACCTCTCACTGCCTC 59.817 66.667 0.00 0.00 0.00 4.70
143 144 3.753434 CGCGACCTCTCACTGCCT 61.753 66.667 0.00 0.00 0.00 4.75
144 145 3.973267 GACGCGACCTCTCACTGCC 62.973 68.421 15.93 0.00 0.00 4.85
145 146 2.505118 GACGCGACCTCTCACTGC 60.505 66.667 15.93 0.00 0.00 4.40
146 147 2.179517 GGACGCGACCTCTCACTG 59.820 66.667 20.46 0.00 0.00 3.66
147 148 3.432588 CGGACGCGACCTCTCACT 61.433 66.667 24.38 0.00 0.00 3.41
164 165 4.722700 TTGAAGGCGGCTCAGGGC 62.723 66.667 13.70 0.17 40.90 5.19
165 166 2.117156 CATTGAAGGCGGCTCAGGG 61.117 63.158 13.70 4.73 0.00 4.45
166 167 2.768492 GCATTGAAGGCGGCTCAGG 61.768 63.158 13.70 9.36 0.00 3.86
167 168 2.796651 GCATTGAAGGCGGCTCAG 59.203 61.111 13.70 1.67 0.00 3.35
174 175 3.880846 CCGCTCCGCATTGAAGGC 61.881 66.667 0.00 0.00 0.00 4.35
175 176 3.880846 GCCGCTCCGCATTGAAGG 61.881 66.667 0.00 0.00 0.00 3.46
176 177 4.228097 CGCCGCTCCGCATTGAAG 62.228 66.667 0.00 0.00 0.00 3.02
195 196 0.585357 CATTCATGCCGCTGTAGAGC 59.415 55.000 0.76 0.76 42.37 4.09
207 208 2.411701 CAGCTGCCCGCATTCATG 59.588 61.111 0.00 0.00 42.61 3.07
208 209 2.831742 CCAGCTGCCCGCATTCAT 60.832 61.111 8.66 0.00 42.61 2.57
243 244 2.224805 AAAAATCCTCCCCCTCCCGC 62.225 60.000 0.00 0.00 0.00 6.13
244 245 2.007576 AAAAATCCTCCCCCTCCCG 58.992 57.895 0.00 0.00 0.00 5.14
259 260 1.830408 CGCCCTGACCCACCAAAAA 60.830 57.895 0.00 0.00 0.00 1.94
260 261 2.203422 CGCCCTGACCCACCAAAA 60.203 61.111 0.00 0.00 0.00 2.44
261 262 4.278513 CCGCCCTGACCCACCAAA 62.279 66.667 0.00 0.00 0.00 3.28
265 266 4.394712 CTGACCGCCCTGACCCAC 62.395 72.222 0.00 0.00 0.00 4.61
275 276 2.359230 AAGCCTGCTTCTGACCGC 60.359 61.111 0.00 0.00 0.00 5.68
283 284 0.613012 GACCAATCCCAAGCCTGCTT 60.613 55.000 0.00 0.00 36.60 3.91
298 299 0.534203 GGTTTGCAAGAGTCCGACCA 60.534 55.000 8.93 0.00 0.00 4.02
299 300 0.250338 AGGTTTGCAAGAGTCCGACC 60.250 55.000 6.16 6.16 0.00 4.79
322 324 1.149148 GCAAACCGGAGACAAGAGTC 58.851 55.000 9.46 0.00 45.31 3.36
343 345 1.419107 GGTCCGGACGCGATTTCTTC 61.419 60.000 27.68 6.46 0.00 2.87
344 346 1.447314 GGTCCGGACGCGATTTCTT 60.447 57.895 27.68 0.00 0.00 2.52
346 348 3.252484 CGGTCCGGACGCGATTTC 61.252 66.667 30.00 15.13 0.00 2.17
378 380 0.606401 AACCATCCAACGCTGACCTG 60.606 55.000 0.00 0.00 0.00 4.00
380 382 0.521735 GAAACCATCCAACGCTGACC 59.478 55.000 0.00 0.00 0.00 4.02
391 393 3.861840 TGTTCAGATCGAGGAAACCATC 58.138 45.455 0.00 0.00 0.00 3.51
392 394 3.981071 TGTTCAGATCGAGGAAACCAT 57.019 42.857 0.00 0.00 0.00 3.55
394 396 2.412089 CGTTGTTCAGATCGAGGAAACC 59.588 50.000 0.00 0.00 0.00 3.27
396 398 3.380479 ACGTTGTTCAGATCGAGGAAA 57.620 42.857 0.00 0.00 0.00 3.13
397 399 4.508461 TTACGTTGTTCAGATCGAGGAA 57.492 40.909 0.00 0.00 0.00 3.36
398 400 4.713824 ATTACGTTGTTCAGATCGAGGA 57.286 40.909 0.00 0.00 0.00 3.71
399 401 4.027621 CGAATTACGTTGTTCAGATCGAGG 60.028 45.833 0.00 0.00 37.22 4.63
400 402 4.791676 TCGAATTACGTTGTTCAGATCGAG 59.208 41.667 0.00 0.00 43.13 4.04
401 403 4.725359 TCGAATTACGTTGTTCAGATCGA 58.275 39.130 0.00 0.00 43.13 3.59
402 404 5.430220 TTCGAATTACGTTGTTCAGATCG 57.570 39.130 0.00 0.00 43.13 3.69
403 405 6.183360 ACCATTCGAATTACGTTGTTCAGATC 60.183 38.462 8.21 0.00 43.13 2.75
405 407 4.992319 ACCATTCGAATTACGTTGTTCAGA 59.008 37.500 8.21 0.00 43.13 3.27
406 408 5.277601 ACCATTCGAATTACGTTGTTCAG 57.722 39.130 8.21 0.00 43.13 3.02
407 409 5.444983 CAACCATTCGAATTACGTTGTTCA 58.555 37.500 22.61 0.00 43.13 3.18
408 410 4.319901 GCAACCATTCGAATTACGTTGTTC 59.680 41.667 27.00 16.59 43.13 3.18
409 411 4.223659 GCAACCATTCGAATTACGTTGTT 58.776 39.130 27.00 15.19 43.13 2.83
410 412 3.665848 CGCAACCATTCGAATTACGTTGT 60.666 43.478 27.00 11.61 43.13 3.32
411 413 2.837878 CGCAACCATTCGAATTACGTTG 59.162 45.455 24.72 24.72 43.13 4.10
412 414 2.159626 CCGCAACCATTCGAATTACGTT 60.160 45.455 8.21 8.39 43.13 3.99
413 415 1.395608 CCGCAACCATTCGAATTACGT 59.604 47.619 8.21 2.15 43.13 3.57
414 416 1.267832 CCCGCAACCATTCGAATTACG 60.268 52.381 8.21 7.83 44.09 3.18
416 418 2.285083 CTCCCGCAACCATTCGAATTA 58.715 47.619 8.21 0.00 0.00 1.40
418 420 0.748005 CCTCCCGCAACCATTCGAAT 60.748 55.000 4.39 4.39 0.00 3.34
419 421 1.376683 CCTCCCGCAACCATTCGAA 60.377 57.895 0.00 0.00 0.00 3.71
420 422 2.119484 AACCTCCCGCAACCATTCGA 62.119 55.000 0.00 0.00 0.00 3.71
421 423 1.241315 AAACCTCCCGCAACCATTCG 61.241 55.000 0.00 0.00 0.00 3.34
422 424 0.243636 CAAACCTCCCGCAACCATTC 59.756 55.000 0.00 0.00 0.00 2.67
423 425 0.178975 TCAAACCTCCCGCAACCATT 60.179 50.000 0.00 0.00 0.00 3.16
424 426 0.609131 CTCAAACCTCCCGCAACCAT 60.609 55.000 0.00 0.00 0.00 3.55
425 427 1.228124 CTCAAACCTCCCGCAACCA 60.228 57.895 0.00 0.00 0.00 3.67
434 436 0.319641 AACGCCGACTCTCAAACCTC 60.320 55.000 0.00 0.00 0.00 3.85
462 465 2.103094 TCGTCCTGAATGCATCCTTAGG 59.897 50.000 0.00 0.68 0.00 2.69
467 470 1.293924 CAGTCGTCCTGAATGCATCC 58.706 55.000 0.00 0.00 44.49 3.51
586 592 2.656422 CGATGCTTTGCTTTGTTTACCG 59.344 45.455 0.00 0.00 0.00 4.02
763 769 6.292596 GCATCGTTTTAGTTTTTCCATTTGCA 60.293 34.615 0.00 0.00 0.00 4.08
769 775 3.304794 CGGGCATCGTTTTAGTTTTTCCA 60.305 43.478 0.00 0.00 0.00 3.53
770 776 3.058085 TCGGGCATCGTTTTAGTTTTTCC 60.058 43.478 0.00 0.00 40.32 3.13
804 811 7.699391 GGATAGCTAAATGGGTTTCGTTTAAAC 59.301 37.037 8.35 8.35 45.70 2.01
809 816 4.204799 GGGATAGCTAAATGGGTTTCGTT 58.795 43.478 0.00 0.00 0.00 3.85
814 821 2.414612 TCGGGGATAGCTAAATGGGTT 58.585 47.619 0.00 0.00 0.00 4.11
823 830 3.305720 TGAAACAGTATCGGGGATAGCT 58.694 45.455 0.00 0.00 0.00 3.32
913 964 2.761767 ACCTTTTTAAACCGCCAGTTGT 59.238 40.909 0.00 0.00 39.19 3.32
1005 1058 1.001633 CCCGTGCTTTACTGGTACTGT 59.998 52.381 0.00 0.00 44.39 3.55
1087 1140 4.347453 CTGGTTGCTTGCCGTGCC 62.347 66.667 0.00 0.00 0.00 5.01
1520 1582 5.065613 ACTAGAGCAGAAGAGGAGATCAT 57.934 43.478 0.00 0.00 0.00 2.45
1628 1690 0.392193 AGGTGAATCGAGCAAGCAGG 60.392 55.000 0.00 0.00 0.00 4.85
1687 1749 3.631250 TCTCAAAAACAAGGCTGGACTT 58.369 40.909 0.00 0.00 0.00 3.01
1981 2049 3.482156 AAAGCTCATCATCATAGCCGT 57.518 42.857 0.00 0.00 36.92 5.68
2498 2947 1.331161 CGAAATATGTGTCGCTGACGC 60.331 52.381 13.07 13.07 42.60 5.19
2580 3031 8.592998 CGAACTATCAGTTACAAGGTAAACATC 58.407 37.037 0.00 0.00 38.80 3.06
3028 3480 9.635404 CCCAACCAAGTTATATTCCTTACATTA 57.365 33.333 0.00 0.00 0.00 1.90
3029 3481 7.069455 GCCCAACCAAGTTATATTCCTTACATT 59.931 37.037 0.00 0.00 0.00 2.71
3030 3482 6.549736 GCCCAACCAAGTTATATTCCTTACAT 59.450 38.462 0.00 0.00 0.00 2.29
3031 3483 5.889289 GCCCAACCAAGTTATATTCCTTACA 59.111 40.000 0.00 0.00 0.00 2.41
3032 3484 6.127101 AGCCCAACCAAGTTATATTCCTTAC 58.873 40.000 0.00 0.00 0.00 2.34
3033 3485 6.335781 AGCCCAACCAAGTTATATTCCTTA 57.664 37.500 0.00 0.00 0.00 2.69
3034 3486 5.206905 AGCCCAACCAAGTTATATTCCTT 57.793 39.130 0.00 0.00 0.00 3.36
3035 3487 4.881157 AGCCCAACCAAGTTATATTCCT 57.119 40.909 0.00 0.00 0.00 3.36
3036 3488 6.605995 AGTTTAGCCCAACCAAGTTATATTCC 59.394 38.462 0.00 0.00 0.00 3.01
3037 3489 7.640597 AGTTTAGCCCAACCAAGTTATATTC 57.359 36.000 0.00 0.00 0.00 1.75
3038 3490 9.709387 ATAAGTTTAGCCCAACCAAGTTATATT 57.291 29.630 0.00 0.00 0.00 1.28
3039 3491 9.131791 CATAAGTTTAGCCCAACCAAGTTATAT 57.868 33.333 0.00 0.00 0.00 0.86
3040 3492 7.558444 CCATAAGTTTAGCCCAACCAAGTTATA 59.442 37.037 0.00 0.00 0.00 0.98
3041 3493 6.379988 CCATAAGTTTAGCCCAACCAAGTTAT 59.620 38.462 0.00 0.00 0.00 1.89
3042 3494 5.712917 CCATAAGTTTAGCCCAACCAAGTTA 59.287 40.000 0.00 0.00 0.00 2.24
3043 3495 4.526650 CCATAAGTTTAGCCCAACCAAGTT 59.473 41.667 0.00 0.00 0.00 2.66
3044 3496 4.086457 CCATAAGTTTAGCCCAACCAAGT 58.914 43.478 0.00 0.00 0.00 3.16
3045 3497 3.447229 CCCATAAGTTTAGCCCAACCAAG 59.553 47.826 0.00 0.00 0.00 3.61
3046 3498 3.076182 TCCCATAAGTTTAGCCCAACCAA 59.924 43.478 0.00 0.00 0.00 3.67
3047 3499 2.650322 TCCCATAAGTTTAGCCCAACCA 59.350 45.455 0.00 0.00 0.00 3.67
3048 3500 3.375647 TCCCATAAGTTTAGCCCAACC 57.624 47.619 0.00 0.00 0.00 3.77
3049 3501 5.731957 TTTTCCCATAAGTTTAGCCCAAC 57.268 39.130 0.00 0.00 0.00 3.77
3075 3527 8.961092 CGACATATGCAAATTCAAAATAGGAAG 58.039 33.333 1.58 0.00 0.00 3.46
3076 3528 7.920151 CCGACATATGCAAATTCAAAATAGGAA 59.080 33.333 1.58 0.00 0.00 3.36
3077 3529 7.284261 TCCGACATATGCAAATTCAAAATAGGA 59.716 33.333 1.58 0.00 0.00 2.94
3078 3530 7.424803 TCCGACATATGCAAATTCAAAATAGG 58.575 34.615 1.58 0.00 0.00 2.57
3079 3531 8.854979 TTCCGACATATGCAAATTCAAAATAG 57.145 30.769 1.58 0.00 0.00 1.73
3080 3532 9.247126 CATTCCGACATATGCAAATTCAAAATA 57.753 29.630 1.58 0.00 0.00 1.40
3081 3533 7.225145 CCATTCCGACATATGCAAATTCAAAAT 59.775 33.333 1.58 0.00 0.00 1.82
3082 3534 6.534436 CCATTCCGACATATGCAAATTCAAAA 59.466 34.615 1.58 0.00 0.00 2.44
3083 3535 6.041511 CCATTCCGACATATGCAAATTCAAA 58.958 36.000 1.58 0.00 0.00 2.69
3084 3536 5.359292 TCCATTCCGACATATGCAAATTCAA 59.641 36.000 1.58 0.00 0.00 2.69
3085 3537 4.886489 TCCATTCCGACATATGCAAATTCA 59.114 37.500 1.58 0.00 0.00 2.57
3086 3538 5.437289 TCCATTCCGACATATGCAAATTC 57.563 39.130 1.58 0.00 0.00 2.17
3087 3539 5.221303 CCTTCCATTCCGACATATGCAAATT 60.221 40.000 1.58 0.00 0.00 1.82
3088 3540 4.279169 CCTTCCATTCCGACATATGCAAAT 59.721 41.667 1.58 0.00 0.00 2.32
3089 3541 3.631686 CCTTCCATTCCGACATATGCAAA 59.368 43.478 1.58 0.00 0.00 3.68
3090 3542 3.213506 CCTTCCATTCCGACATATGCAA 58.786 45.455 1.58 0.00 0.00 4.08
3091 3543 2.487086 CCCTTCCATTCCGACATATGCA 60.487 50.000 1.58 0.00 0.00 3.96
3092 3544 2.154462 CCCTTCCATTCCGACATATGC 58.846 52.381 1.58 0.00 0.00 3.14
3093 3545 2.154462 GCCCTTCCATTCCGACATATG 58.846 52.381 0.00 0.00 0.00 1.78
3094 3546 1.073923 GGCCCTTCCATTCCGACATAT 59.926 52.381 0.00 0.00 34.01 1.78
3095 3547 0.472471 GGCCCTTCCATTCCGACATA 59.528 55.000 0.00 0.00 34.01 2.29
3096 3548 1.227383 GGCCCTTCCATTCCGACAT 59.773 57.895 0.00 0.00 34.01 3.06
3097 3549 1.923395 AGGCCCTTCCATTCCGACA 60.923 57.895 0.00 0.00 37.29 4.35
3098 3550 1.452108 CAGGCCCTTCCATTCCGAC 60.452 63.158 0.00 0.00 37.29 4.79
3099 3551 2.679342 CCAGGCCCTTCCATTCCGA 61.679 63.158 0.00 0.00 37.29 4.55
3100 3552 2.124151 CCAGGCCCTTCCATTCCG 60.124 66.667 0.00 0.00 37.29 4.30
3101 3553 2.280079 CCCAGGCCCTTCCATTCC 59.720 66.667 0.00 0.00 37.29 3.01
3102 3554 1.228510 CTCCCAGGCCCTTCCATTC 59.771 63.158 0.00 0.00 37.29 2.67
3103 3555 1.544917 ACTCCCAGGCCCTTCCATT 60.545 57.895 0.00 0.00 37.29 3.16
3104 3556 2.003548 GACTCCCAGGCCCTTCCAT 61.004 63.158 0.00 0.00 37.29 3.41
3105 3557 2.610859 GACTCCCAGGCCCTTCCA 60.611 66.667 0.00 0.00 37.29 3.53
3106 3558 1.988982 GATGACTCCCAGGCCCTTCC 61.989 65.000 0.00 0.00 0.00 3.46
3107 3559 0.985490 AGATGACTCCCAGGCCCTTC 60.985 60.000 0.00 0.00 0.00 3.46
3112 3742 1.817099 CGCAAGATGACTCCCAGGC 60.817 63.158 0.00 0.00 43.02 4.85
3268 3901 2.227865 GCGGCTTTGAATTAAGACCACA 59.772 45.455 0.00 0.00 28.77 4.17
3447 4082 4.065789 CCCTTGTAAGACCACTGAGAAAC 58.934 47.826 0.00 0.00 0.00 2.78
3450 4085 2.632996 CACCCTTGTAAGACCACTGAGA 59.367 50.000 0.00 0.00 0.00 3.27
4024 4659 0.106708 TCGCTTGAAGTCTTGCCTGT 59.893 50.000 0.00 0.00 0.00 4.00
4039 4674 3.189618 TCATCAATCATCTGCTTCGCT 57.810 42.857 0.00 0.00 0.00 4.93
4435 5077 3.637432 CGCAGACCTAGATCATCTTGAC 58.363 50.000 0.00 0.00 0.00 3.18
4528 5175 5.105351 TGTGTCTACCATCTGTAACCTGATG 60.105 44.000 0.00 0.00 43.14 3.07
4597 5244 6.808829 TGTGTAATTTATCCCAGTACCTACG 58.191 40.000 0.00 0.00 0.00 3.51
4700 5347 3.187022 CACATGAGACAGTTGCAATTCGA 59.813 43.478 0.59 0.00 0.00 3.71
4701 5348 3.485633 CACATGAGACAGTTGCAATTCG 58.514 45.455 0.59 0.00 0.00 3.34
4820 5467 7.707035 CACTCACTGGTGTTATAGATACTTTCC 59.293 40.741 0.53 0.00 33.04 3.13
4821 5468 8.467598 TCACTCACTGGTGTTATAGATACTTTC 58.532 37.037 0.53 0.00 38.28 2.62
4830 5480 3.832490 ACTGCTCACTCACTGGTGTTATA 59.168 43.478 0.53 0.00 38.28 0.98
4844 5494 0.390472 GTACCAGGCTCACTGCTCAC 60.390 60.000 0.00 0.00 46.14 3.51
4943 5593 7.670364 CAGGAAGAATACCCAAAAAGACAAAT 58.330 34.615 0.00 0.00 0.00 2.32
4944 5594 6.462347 GCAGGAAGAATACCCAAAAAGACAAA 60.462 38.462 0.00 0.00 0.00 2.83
4967 5617 9.985730 ATTTTTGATAGATTTCAGAACAAAGCA 57.014 25.926 0.00 0.00 0.00 3.91
5010 5660 2.354328 TGGGGGTGATGTCCTAACTTT 58.646 47.619 0.00 0.00 0.00 2.66
5023 5673 8.263640 TGATTGAAACAAATTATTATGGGGGTG 58.736 33.333 0.00 0.00 0.00 4.61
5171 5821 2.941616 CGTTTGGGGCCAACATGGG 61.942 63.158 4.39 0.00 38.19 4.00
5205 5855 5.005394 CGAATACCTGACTAAACAATGACCG 59.995 44.000 0.00 0.00 0.00 4.79
5224 5874 1.575419 ACCCAGTTAGGTGGCGAATA 58.425 50.000 0.00 0.00 39.24 1.75
5228 5878 1.072505 ACAACCCAGTTAGGTGGCG 59.927 57.895 0.00 0.00 40.05 5.69
5235 5885 2.738587 TCCAAAGCACAACCCAGTTA 57.261 45.000 0.00 0.00 0.00 2.24
5237 5887 1.688197 CAATCCAAAGCACAACCCAGT 59.312 47.619 0.00 0.00 0.00 4.00
5260 5910 2.034812 GGGCTGAGTATGAAGAGTACCG 59.965 54.545 0.00 0.00 0.00 4.02
5268 5918 3.743521 GCACATATGGGCTGAGTATGAA 58.256 45.455 22.95 0.00 42.27 2.57
5271 5921 1.970640 TCGCACATATGGGCTGAGTAT 59.029 47.619 26.67 0.00 43.67 2.12
5289 5939 3.989104 GGTGTCCCCATATCTGTCG 57.011 57.895 0.00 0.00 0.00 4.35
5325 5975 1.524961 CATAGCGGGCCACAACCTA 59.475 57.895 4.39 0.00 0.00 3.08
5327 5977 2.828549 CCATAGCGGGCCACAACC 60.829 66.667 4.39 0.00 0.00 3.77
5344 5994 4.531426 TGTGGGGTTGTGGTGGGC 62.531 66.667 0.00 0.00 0.00 5.36
5345 5995 0.762461 ATTTGTGGGGTTGTGGTGGG 60.762 55.000 0.00 0.00 0.00 4.61
5346 5996 0.392336 CATTTGTGGGGTTGTGGTGG 59.608 55.000 0.00 0.00 0.00 4.61
5347 5997 0.249826 GCATTTGTGGGGTTGTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
5348 5998 1.406860 GGCATTTGTGGGGTTGTGGT 61.407 55.000 0.00 0.00 0.00 4.16
5349 5999 1.370810 GGCATTTGTGGGGTTGTGG 59.629 57.895 0.00 0.00 0.00 4.17
5350 6000 1.370810 GGGCATTTGTGGGGTTGTG 59.629 57.895 0.00 0.00 0.00 3.33
5351 6001 1.841103 GGGGCATTTGTGGGGTTGT 60.841 57.895 0.00 0.00 0.00 3.32
5352 6002 1.840650 TGGGGCATTTGTGGGGTTG 60.841 57.895 0.00 0.00 0.00 3.77
5353 6003 1.841103 GTGGGGCATTTGTGGGGTT 60.841 57.895 0.00 0.00 0.00 4.11
5354 6004 2.203773 GTGGGGCATTTGTGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
5355 6005 2.161713 TAGGTGGGGCATTTGTGGGG 62.162 60.000 0.00 0.00 0.00 4.96
5376 6026 3.064931 GACTGAACTAGGGTTTTGTCCG 58.935 50.000 0.00 0.00 35.58 4.79
5393 6043 2.430921 GCGGTCGAGTGTGGACTG 60.431 66.667 0.00 0.00 42.42 3.51
5394 6044 2.597805 AGCGGTCGAGTGTGGACT 60.598 61.111 0.00 0.00 34.82 3.85
5434 6084 1.079336 GAGGGGACGAAAAGGGACG 60.079 63.158 0.00 0.00 0.00 4.79
5472 6132 1.884075 AATGCCGTAGTCACTGCCGA 61.884 55.000 0.59 0.00 34.26 5.54
5474 6134 0.108138 AGAATGCCGTAGTCACTGCC 60.108 55.000 0.00 0.00 34.26 4.85
5485 6145 0.953471 TGGACGGACAAAGAATGCCG 60.953 55.000 0.00 0.00 46.98 5.69
5486 6146 0.804989 CTGGACGGACAAAGAATGCC 59.195 55.000 0.00 0.00 0.00 4.40
5487 6147 1.808411 TCTGGACGGACAAAGAATGC 58.192 50.000 0.00 0.00 0.00 3.56
5488 6148 3.372206 GTGATCTGGACGGACAAAGAATG 59.628 47.826 0.00 0.00 0.00 2.67
5489 6149 3.600388 GTGATCTGGACGGACAAAGAAT 58.400 45.455 0.00 0.00 0.00 2.40
5490 6150 2.609491 CGTGATCTGGACGGACAAAGAA 60.609 50.000 0.00 0.00 33.08 2.52
5491 6151 1.067846 CGTGATCTGGACGGACAAAGA 60.068 52.381 0.00 0.00 33.08 2.52
5492 6152 1.350193 CGTGATCTGGACGGACAAAG 58.650 55.000 0.00 0.00 33.08 2.77
5493 6153 3.507597 CGTGATCTGGACGGACAAA 57.492 52.632 0.00 0.00 33.08 2.83
5499 6159 1.516386 CCGAACCGTGATCTGGACG 60.516 63.158 10.99 13.57 36.56 4.79
5500 6160 1.810030 GCCGAACCGTGATCTGGAC 60.810 63.158 10.99 4.66 0.00 4.02
5501 6161 2.225791 CTGCCGAACCGTGATCTGGA 62.226 60.000 10.99 0.00 0.00 3.86
5502 6162 1.811266 CTGCCGAACCGTGATCTGG 60.811 63.158 3.35 3.35 0.00 3.86
5503 6163 1.811266 CCTGCCGAACCGTGATCTG 60.811 63.158 0.00 0.00 0.00 2.90
5504 6164 1.541310 TTCCTGCCGAACCGTGATCT 61.541 55.000 0.00 0.00 0.00 2.75
5505 6165 1.079405 TTCCTGCCGAACCGTGATC 60.079 57.895 0.00 0.00 0.00 2.92
5506 6166 1.079127 CTTCCTGCCGAACCGTGAT 60.079 57.895 0.00 0.00 0.00 3.06
5507 6167 2.342279 CTTCCTGCCGAACCGTGA 59.658 61.111 0.00 0.00 0.00 4.35
5508 6168 2.742372 CCTTCCTGCCGAACCGTG 60.742 66.667 0.00 0.00 0.00 4.94
5509 6169 4.699522 GCCTTCCTGCCGAACCGT 62.700 66.667 0.00 0.00 0.00 4.83
5576 6236 2.325166 CGCTAGCTCCTCGTCGTC 59.675 66.667 13.93 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.