Multiple sequence alignment - TraesCS4D01G214100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G214100 chr4D 100.000 3654 0 0 1 3654 367041262 367044915 0.000000e+00 6748.0
1 TraesCS4D01G214100 chr4D 100.000 44 0 0 707 750 135038796 135038753 8.410000e-12 82.4
2 TraesCS4D01G214100 chr4D 100.000 44 0 0 707 750 241206396 241206353 8.410000e-12 82.4
3 TraesCS4D01G214100 chr4D 100.000 44 0 0 707 750 241238900 241238857 8.410000e-12 82.4
4 TraesCS4D01G214100 chr4B 93.817 1973 99 10 752 2712 451902242 451904203 0.000000e+00 2946.0
5 TraesCS4D01G214100 chr4B 91.983 711 27 13 1 706 451901552 451902237 0.000000e+00 970.0
6 TraesCS4D01G214100 chr4B 90.265 226 16 3 3434 3654 451907518 451907742 1.280000e-74 291.0
7 TraesCS4D01G214100 chr4B 82.609 322 21 13 3281 3568 451907144 451907464 6.060000e-63 252.0
8 TraesCS4D01G214100 chr4A 93.849 1447 66 8 751 2178 97876239 97874797 0.000000e+00 2158.0
9 TraesCS4D01G214100 chr4A 94.248 678 30 4 2215 2885 97874796 97874121 0.000000e+00 1027.0
10 TraesCS4D01G214100 chr4A 93.557 388 17 4 3273 3654 97873868 97873483 4.090000e-159 571.0
11 TraesCS4D01G214100 chr4A 80.518 734 57 36 1 706 97876918 97876243 5.490000e-133 484.0
12 TraesCS4D01G214100 chr4A 79.535 215 27 7 3149 3347 159291970 159291757 1.770000e-28 137.0
13 TraesCS4D01G214100 chr2D 85.252 773 91 14 1152 1919 325249143 325248389 0.000000e+00 774.0
14 TraesCS4D01G214100 chr7D 84.794 776 96 13 1149 1919 31931016 31931774 0.000000e+00 760.0
15 TraesCS4D01G214100 chr7D 79.882 169 18 7 3169 3321 263827650 263827818 3.860000e-20 110.0
16 TraesCS4D01G214100 chr7D 84.946 93 14 0 2999 3091 382336747 382336839 1.080000e-15 95.3
17 TraesCS4D01G214100 chrUn 82.406 773 93 24 1152 1919 390962484 390961750 5.150000e-178 634.0
18 TraesCS4D01G214100 chrUn 100.000 44 0 0 707 750 40083094 40083051 8.410000e-12 82.4
19 TraesCS4D01G214100 chrUn 100.000 44 0 0 707 750 246707712 246707755 8.410000e-12 82.4
20 TraesCS4D01G214100 chrUn 100.000 44 0 0 707 750 266190917 266190874 8.410000e-12 82.4
21 TraesCS4D01G214100 chr5D 89.109 303 27 4 1576 1874 389494869 389494569 4.460000e-99 372.0
22 TraesCS4D01G214100 chr5B 88.276 290 32 2 1150 1438 620779783 620779495 2.700000e-91 346.0
23 TraesCS4D01G214100 chr5A 84.273 337 42 7 1588 1919 492682043 492681713 5.890000e-83 318.0
24 TraesCS4D01G214100 chr3B 85.271 258 31 6 1576 1832 320114721 320114470 3.620000e-65 259.0
25 TraesCS4D01G214100 chr6B 82.414 290 43 7 1546 1833 259709512 259709795 2.820000e-61 246.0
26 TraesCS4D01G214100 chr2B 83.784 259 36 5 1576 1833 311671658 311671911 1.310000e-59 241.0
27 TraesCS4D01G214100 chr3A 77.121 389 43 20 2997 3343 730352960 730353344 2.240000e-42 183.0
28 TraesCS4D01G214100 chr7A 79.762 252 28 14 3115 3347 696950732 696950485 1.050000e-35 161.0
29 TraesCS4D01G214100 chr7A 76.221 307 33 20 2997 3268 286763515 286763816 3.830000e-25 126.0
30 TraesCS4D01G214100 chr7A 77.838 185 29 4 3171 3343 619243391 619243207 1.790000e-18 104.0
31 TraesCS4D01G214100 chr7B 77.011 174 23 11 3150 3311 332815932 332816100 2.340000e-12 84.2
32 TraesCS4D01G214100 chr6D 100.000 44 0 0 707 750 299020902 299020945 8.410000e-12 82.4
33 TraesCS4D01G214100 chr6D 100.000 44 0 0 707 750 430478921 430478964 8.410000e-12 82.4
34 TraesCS4D01G214100 chr1D 100.000 44 0 0 707 750 141347705 141347662 8.410000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G214100 chr4D 367041262 367044915 3653 False 6748.00 6748 100.0000 1 3654 1 chr4D.!!$F1 3653
1 TraesCS4D01G214100 chr4B 451901552 451907742 6190 False 1114.75 2946 89.6685 1 3654 4 chr4B.!!$F1 3653
2 TraesCS4D01G214100 chr4A 97873483 97876918 3435 True 1060.00 2158 90.5430 1 3654 4 chr4A.!!$R2 3653
3 TraesCS4D01G214100 chr2D 325248389 325249143 754 True 774.00 774 85.2520 1152 1919 1 chr2D.!!$R1 767
4 TraesCS4D01G214100 chr7D 31931016 31931774 758 False 760.00 760 84.7940 1149 1919 1 chr7D.!!$F1 770
5 TraesCS4D01G214100 chrUn 390961750 390962484 734 True 634.00 634 82.4060 1152 1919 1 chrUn.!!$R3 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 325 0.033504 ATACAGCTCATAACCCGCGG 59.966 55.0 21.04 21.04 0.00 6.46 F
720 761 0.038166 GCAACCACAGAGGATGGGAA 59.962 55.0 0.00 0.00 41.97 3.97 F
723 764 0.119155 ACCACAGAGGATGGGAAGGA 59.881 55.0 0.00 0.00 41.97 3.36 F
744 785 0.393537 CCAATCGCCTGCCTCTTTCT 60.394 55.0 0.00 0.00 0.00 2.52 F
747 788 0.393537 ATCGCCTGCCTCTTTCTTGG 60.394 55.0 0.00 0.00 0.00 3.61 F
2147 2211 0.586802 TCGCAGAGGACGATCATACG 59.413 55.0 0.00 0.00 33.96 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1351 0.588233 GCAATCTTCTCGCATGCGTG 60.588 55.000 36.50 33.44 40.74 5.34 R
2237 2301 0.900647 CAGGGAGACTCCGACCTGTT 60.901 60.000 15.46 0.00 44.21 3.16 R
2347 2411 1.433879 CGACCTCCGCCTTCTGTAG 59.566 63.158 0.00 0.00 0.00 2.74 R
2532 2596 1.582968 CTGCGTGATGCCTTGCTTT 59.417 52.632 0.00 0.00 45.60 3.51 R
2629 2693 1.963338 GCTTGCTGAGGTTGAGCGT 60.963 57.895 0.00 0.00 39.47 5.07 R
3166 6120 0.179084 CGGGCATAGACGGTCATGTT 60.179 55.000 11.27 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.680490 GCAGGCCCTCTCTATTTATTCC 58.320 50.000 0.00 0.00 0.00 3.01
89 94 1.670087 CGCAGGTGGTAACTGACAGAG 60.670 57.143 10.08 0.00 38.20 3.35
143 149 2.669808 CTTCGGAGGACAGGATCGCG 62.670 65.000 0.00 0.00 0.00 5.87
145 151 4.593864 GGAGGACAGGATCGCGGC 62.594 72.222 6.13 0.00 0.00 6.53
186 192 2.170817 AGGTATTTCCTCGCCTTCTTCC 59.829 50.000 0.00 0.00 44.42 3.46
187 193 2.170817 GGTATTTCCTCGCCTTCTTCCT 59.829 50.000 0.00 0.00 0.00 3.36
188 194 3.370633 GGTATTTCCTCGCCTTCTTCCTT 60.371 47.826 0.00 0.00 0.00 3.36
189 195 2.474410 TTTCCTCGCCTTCTTCCTTC 57.526 50.000 0.00 0.00 0.00 3.46
206 212 0.937699 TTCCTCGCGTTTCGTCAGTG 60.938 55.000 5.77 0.00 39.67 3.66
218 224 3.990318 TCGTCAGTGGCATGATACTAG 57.010 47.619 0.00 0.00 0.00 2.57
267 285 3.077359 CTGCCTTCTGTTCTAGGTTTGG 58.923 50.000 0.00 0.00 33.91 3.28
305 324 1.139989 CATACAGCTCATAACCCGCG 58.860 55.000 0.00 0.00 0.00 6.46
306 325 0.033504 ATACAGCTCATAACCCGCGG 59.966 55.000 21.04 21.04 0.00 6.46
307 326 1.324740 TACAGCTCATAACCCGCGGT 61.325 55.000 26.12 9.29 37.65 5.68
308 327 1.324740 ACAGCTCATAACCCGCGGTA 61.325 55.000 26.12 11.61 33.12 4.02
309 328 0.874607 CAGCTCATAACCCGCGGTAC 60.875 60.000 26.12 3.63 33.12 3.34
312 331 0.249322 CTCATAACCCGCGGTACAGG 60.249 60.000 26.12 10.93 33.12 4.00
389 408 3.746751 CGGAGGCTGATTGATCCTCAATT 60.747 47.826 9.40 0.00 46.20 2.32
390 409 3.819902 GGAGGCTGATTGATCCTCAATTC 59.180 47.826 9.40 0.00 46.20 2.17
391 410 4.446023 GGAGGCTGATTGATCCTCAATTCT 60.446 45.833 9.40 1.40 46.20 2.40
392 411 5.126699 AGGCTGATTGATCCTCAATTCTT 57.873 39.130 4.03 0.00 46.20 2.52
449 468 6.680131 GCGCTAGATCTATATGACATGAAGCT 60.680 42.308 2.11 0.00 0.00 3.74
466 485 9.391006 ACATGAAGCTAATTAAACCGAGAATTA 57.609 29.630 0.00 0.00 0.00 1.40
567 588 3.616219 CGATGGGGGAAACAGATTTACA 58.384 45.455 0.00 0.00 29.04 2.41
619 642 2.452600 TGCTGGGAAGGAAACTGTTT 57.547 45.000 5.29 5.29 42.68 2.83
621 644 2.306847 GCTGGGAAGGAAACTGTTTCA 58.693 47.619 28.53 11.51 42.68 2.69
665 697 3.372822 TGAACTGAACACGAAACAAGGTC 59.627 43.478 0.00 0.00 0.00 3.85
666 698 1.931172 ACTGAACACGAAACAAGGTCG 59.069 47.619 0.00 0.00 44.10 4.79
678 719 3.505464 ACAAGGTCGTAGCTGTGTATC 57.495 47.619 0.00 0.00 0.00 2.24
712 753 2.633657 GCACACGCAACCACAGAG 59.366 61.111 0.00 0.00 38.36 3.35
713 754 2.896801 GCACACGCAACCACAGAGG 61.897 63.158 0.00 0.00 40.22 3.69
714 755 1.227527 CACACGCAACCACAGAGGA 60.228 57.895 0.00 0.00 41.22 3.71
715 756 0.603707 CACACGCAACCACAGAGGAT 60.604 55.000 0.00 0.00 41.22 3.24
716 757 0.603707 ACACGCAACCACAGAGGATG 60.604 55.000 0.00 0.00 42.74 3.51
717 758 1.003355 ACGCAACCACAGAGGATGG 60.003 57.895 0.00 0.00 40.35 3.51
718 759 1.746615 CGCAACCACAGAGGATGGG 60.747 63.158 0.00 0.00 44.53 4.00
719 760 1.685224 GCAACCACAGAGGATGGGA 59.315 57.895 0.00 0.00 41.97 4.37
720 761 0.038166 GCAACCACAGAGGATGGGAA 59.962 55.000 0.00 0.00 41.97 3.97
721 762 1.952367 GCAACCACAGAGGATGGGAAG 60.952 57.143 0.00 0.00 41.97 3.46
722 763 0.995024 AACCACAGAGGATGGGAAGG 59.005 55.000 0.00 0.00 41.97 3.46
723 764 0.119155 ACCACAGAGGATGGGAAGGA 59.881 55.000 0.00 0.00 41.97 3.36
724 765 0.543749 CCACAGAGGATGGGAAGGAC 59.456 60.000 0.00 0.00 41.22 3.85
725 766 0.543749 CACAGAGGATGGGAAGGACC 59.456 60.000 0.00 0.00 32.10 4.46
734 775 2.998949 GGAAGGACCCAATCGCCT 59.001 61.111 0.00 0.00 0.00 5.52
735 776 1.452108 GGAAGGACCCAATCGCCTG 60.452 63.158 0.00 0.00 31.06 4.85
736 777 2.044946 AAGGACCCAATCGCCTGC 60.045 61.111 0.00 0.00 31.06 4.85
737 778 3.645268 AAGGACCCAATCGCCTGCC 62.645 63.158 0.00 0.00 31.06 4.85
738 779 4.115199 GGACCCAATCGCCTGCCT 62.115 66.667 0.00 0.00 0.00 4.75
739 780 2.514824 GACCCAATCGCCTGCCTC 60.515 66.667 0.00 0.00 0.00 4.70
740 781 3.011517 ACCCAATCGCCTGCCTCT 61.012 61.111 0.00 0.00 0.00 3.69
741 782 2.273449 CCCAATCGCCTGCCTCTT 59.727 61.111 0.00 0.00 0.00 2.85
742 783 1.379044 CCCAATCGCCTGCCTCTTT 60.379 57.895 0.00 0.00 0.00 2.52
743 784 1.379642 CCCAATCGCCTGCCTCTTTC 61.380 60.000 0.00 0.00 0.00 2.62
744 785 0.393537 CCAATCGCCTGCCTCTTTCT 60.394 55.000 0.00 0.00 0.00 2.52
745 786 1.457346 CAATCGCCTGCCTCTTTCTT 58.543 50.000 0.00 0.00 0.00 2.52
746 787 1.131883 CAATCGCCTGCCTCTTTCTTG 59.868 52.381 0.00 0.00 0.00 3.02
747 788 0.393537 ATCGCCTGCCTCTTTCTTGG 60.394 55.000 0.00 0.00 0.00 3.61
748 789 1.302832 CGCCTGCCTCTTTCTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
749 790 1.301677 CGCCTGCCTCTTTCTTGGTC 61.302 60.000 0.00 0.00 0.00 4.02
781 822 6.040247 CACATATCTTGGACGCTGTAAAGTA 58.960 40.000 0.00 0.00 0.00 2.24
808 849 2.355444 TGATAGTGGATTGTTGCATGCG 59.645 45.455 14.09 0.00 0.00 4.73
818 859 1.265365 TGTTGCATGCGTGAAATCGAA 59.735 42.857 14.09 0.00 0.00 3.71
821 862 2.342179 TGCATGCGTGAAATCGAACTA 58.658 42.857 14.09 0.00 0.00 2.24
898 939 1.852942 ATGCGGTAGTATGTTGCGAG 58.147 50.000 0.00 0.00 0.00 5.03
1011 1052 4.456280 TGTCTTGCAGATGTCGTATTCT 57.544 40.909 0.00 0.00 0.00 2.40
1045 1086 5.826208 AGTCGTTCAAGGTAAACATCCTTTT 59.174 36.000 0.00 0.00 42.57 2.27
1047 1088 7.499895 AGTCGTTCAAGGTAAACATCCTTTTTA 59.500 33.333 0.00 0.00 42.57 1.52
1048 1089 7.588854 GTCGTTCAAGGTAAACATCCTTTTTAC 59.411 37.037 0.00 0.00 42.57 2.01
1057 1098 6.901081 AAACATCCTTTTTACCCTCAGAAG 57.099 37.500 0.00 0.00 0.00 2.85
1064 1105 5.181433 CCTTTTTACCCTCAGAAGTGCTAAC 59.819 44.000 0.00 0.00 0.00 2.34
1102 1143 7.064728 GTCCATGTTCTATGTTTTGGAGTCTAC 59.935 40.741 0.00 0.00 34.12 2.59
1105 1146 4.119442 TCTATGTTTTGGAGTCTACGCC 57.881 45.455 0.00 0.00 36.28 5.68
1303 1351 2.224018 TGTTTGCTGAGGAAAATGGTGC 60.224 45.455 0.00 0.00 0.00 5.01
1520 1568 2.699954 ACTGTTGAGAAGGTATTGCCG 58.300 47.619 0.00 0.00 43.70 5.69
1646 1695 9.698309 TGTTCTTGTTGTTTGAAGATTTTGTTA 57.302 25.926 0.00 0.00 0.00 2.41
1811 1863 5.752955 CCCCAATAATTTATTTGGTCTTGCG 59.247 40.000 14.80 0.11 30.98 4.85
1812 1864 6.406400 CCCCAATAATTTATTTGGTCTTGCGA 60.406 38.462 14.80 0.00 30.98 5.10
1978 2033 7.931948 ACCTTAGTACCATGAATTATGTGCTAC 59.068 37.037 0.00 0.00 34.87 3.58
2012 2067 4.813161 CCACTGACACTTCATATCACATCC 59.187 45.833 0.00 0.00 0.00 3.51
2018 2073 5.917462 ACACTTCATATCACATCCGATTGA 58.083 37.500 0.00 0.00 0.00 2.57
2147 2211 0.586802 TCGCAGAGGACGATCATACG 59.413 55.000 0.00 0.00 33.96 3.06
2179 2243 2.375014 TGCGTAGATCATACTCCCCA 57.625 50.000 0.00 0.00 0.00 4.96
2180 2244 2.889512 TGCGTAGATCATACTCCCCAT 58.110 47.619 0.00 0.00 0.00 4.00
2188 2252 7.122799 CGTAGATCATACTCCCCATATGAAAGA 59.877 40.741 3.65 0.00 41.26 2.52
2193 2257 2.852449 ACTCCCCATATGAAAGAAGGCA 59.148 45.455 3.65 0.00 0.00 4.75
2196 2260 4.473444 TCCCCATATGAAAGAAGGCAATC 58.527 43.478 3.65 0.00 0.00 2.67
2256 2320 3.609703 CAGGTCGGAGTCTCCCTG 58.390 66.667 13.54 10.77 38.63 4.45
2296 2360 2.586079 CCCTACGACAGGCGCATG 60.586 66.667 22.13 22.13 43.98 4.06
2301 2365 0.735978 TACGACAGGCGCATGTCTTG 60.736 55.000 40.99 31.80 46.04 3.02
2347 2411 2.128035 CGTTCAAGATCTCCATACCGC 58.872 52.381 0.00 0.00 0.00 5.68
2482 2546 2.363018 TACTCCCGCAGCTGCTCT 60.363 61.111 34.22 14.97 39.32 4.09
2629 2693 1.305046 GAGGTCCGTCTCCAGGGAA 60.305 63.158 0.00 0.00 38.33 3.97
2820 5671 2.811431 TGCATGCTAAACGCTGTACTTT 59.189 40.909 20.33 0.00 40.11 2.66
2871 5728 7.546358 CAGTTTACATCATGGATTTGGCTAAA 58.454 34.615 0.00 0.00 0.00 1.85
2875 5829 4.646492 ACATCATGGATTTGGCTAAAGGAC 59.354 41.667 0.65 0.00 0.00 3.85
2895 5849 4.440880 GACTATGTTCTGCTGATCTGCTT 58.559 43.478 23.02 6.18 0.00 3.91
2898 5852 2.854963 TGTTCTGCTGATCTGCTTTGT 58.145 42.857 23.02 0.00 0.00 2.83
2902 5856 2.551032 TCTGCTGATCTGCTTTGTTGTG 59.449 45.455 23.02 5.87 0.00 3.33
2903 5857 2.292569 CTGCTGATCTGCTTTGTTGTGT 59.707 45.455 23.02 0.00 0.00 3.72
2905 5859 3.130869 TGCTGATCTGCTTTGTTGTGTTT 59.869 39.130 23.02 0.00 0.00 2.83
2906 5860 4.114794 GCTGATCTGCTTTGTTGTGTTTT 58.885 39.130 16.60 0.00 0.00 2.43
2907 5861 4.207841 GCTGATCTGCTTTGTTGTGTTTTC 59.792 41.667 16.60 0.00 0.00 2.29
2909 5863 5.342433 TGATCTGCTTTGTTGTGTTTTCTG 58.658 37.500 0.00 0.00 0.00 3.02
2911 5865 4.484236 TCTGCTTTGTTGTGTTTTCTGTG 58.516 39.130 0.00 0.00 0.00 3.66
2914 5868 5.053145 TGCTTTGTTGTGTTTTCTGTGTTT 58.947 33.333 0.00 0.00 0.00 2.83
2915 5869 5.525378 TGCTTTGTTGTGTTTTCTGTGTTTT 59.475 32.000 0.00 0.00 0.00 2.43
2917 5871 7.224753 TGCTTTGTTGTGTTTTCTGTGTTTTAA 59.775 29.630 0.00 0.00 0.00 1.52
2918 5872 7.739911 GCTTTGTTGTGTTTTCTGTGTTTTAAG 59.260 33.333 0.00 0.00 0.00 1.85
2919 5873 7.644986 TTGTTGTGTTTTCTGTGTTTTAAGG 57.355 32.000 0.00 0.00 0.00 2.69
2920 5874 6.750148 TGTTGTGTTTTCTGTGTTTTAAGGT 58.250 32.000 0.00 0.00 0.00 3.50
2921 5875 7.883217 TGTTGTGTTTTCTGTGTTTTAAGGTA 58.117 30.769 0.00 0.00 0.00 3.08
2922 5876 8.524487 TGTTGTGTTTTCTGTGTTTTAAGGTAT 58.476 29.630 0.00 0.00 0.00 2.73
2926 5880 7.378728 GTGTTTTCTGTGTTTTAAGGTATCTGC 59.621 37.037 0.00 0.00 0.00 4.26
2927 5881 7.284489 TGTTTTCTGTGTTTTAAGGTATCTGCT 59.716 33.333 0.00 0.00 0.00 4.24
2928 5882 7.435068 TTTCTGTGTTTTAAGGTATCTGCTC 57.565 36.000 0.00 0.00 0.00 4.26
2929 5883 5.488341 TCTGTGTTTTAAGGTATCTGCTCC 58.512 41.667 0.00 0.00 0.00 4.70
2934 5888 6.314152 GTGTTTTAAGGTATCTGCTCCTTCTC 59.686 42.308 0.00 0.00 42.25 2.87
2937 5891 3.121929 AGGTATCTGCTCCTTCTCCAA 57.878 47.619 0.00 0.00 0.00 3.53
2938 5892 3.037549 AGGTATCTGCTCCTTCTCCAAG 58.962 50.000 0.00 0.00 0.00 3.61
2966 5920 7.602517 AGTTTTGTACTATGTTCTGCTGATC 57.397 36.000 0.00 0.00 34.56 2.92
2967 5921 7.390027 AGTTTTGTACTATGTTCTGCTGATCT 58.610 34.615 0.00 0.00 34.56 2.75
2968 5922 7.332926 AGTTTTGTACTATGTTCTGCTGATCTG 59.667 37.037 0.00 0.00 34.56 2.90
2969 5923 4.686972 TGTACTATGTTCTGCTGATCTGC 58.313 43.478 16.98 16.98 0.00 4.26
2970 5924 4.403752 TGTACTATGTTCTGCTGATCTGCT 59.596 41.667 23.02 6.57 0.00 4.24
2971 5925 4.484537 ACTATGTTCTGCTGATCTGCTT 57.515 40.909 23.02 6.18 0.00 3.91
2972 5926 4.841422 ACTATGTTCTGCTGATCTGCTTT 58.159 39.130 23.02 6.48 0.00 3.51
2973 5927 4.634883 ACTATGTTCTGCTGATCTGCTTTG 59.365 41.667 23.02 13.97 0.00 2.77
2974 5928 2.854963 TGTTCTGCTGATCTGCTTTGT 58.145 42.857 23.02 0.00 0.00 2.83
2975 5929 3.216800 TGTTCTGCTGATCTGCTTTGTT 58.783 40.909 23.02 0.00 0.00 2.83
2976 5930 3.004002 TGTTCTGCTGATCTGCTTTGTTG 59.996 43.478 23.02 8.42 0.00 3.33
2977 5931 1.538512 TCTGCTGATCTGCTTTGTTGC 59.461 47.619 23.02 1.84 0.00 4.17
2978 5932 0.599558 TGCTGATCTGCTTTGTTGCC 59.400 50.000 23.02 0.00 0.00 4.52
2979 5933 0.599558 GCTGATCTGCTTTGTTGCCA 59.400 50.000 16.60 0.00 0.00 4.92
2980 5934 1.203994 GCTGATCTGCTTTGTTGCCAT 59.796 47.619 16.60 0.00 0.00 4.40
2981 5935 2.424601 GCTGATCTGCTTTGTTGCCATA 59.575 45.455 16.60 0.00 0.00 2.74
2982 5936 3.733077 GCTGATCTGCTTTGTTGCCATAC 60.733 47.826 16.60 0.00 0.00 2.39
2983 5937 3.689347 TGATCTGCTTTGTTGCCATACT 58.311 40.909 0.00 0.00 0.00 2.12
2984 5938 4.842574 TGATCTGCTTTGTTGCCATACTA 58.157 39.130 0.00 0.00 0.00 1.82
2985 5939 5.439721 TGATCTGCTTTGTTGCCATACTAT 58.560 37.500 0.00 0.00 0.00 2.12
2986 5940 5.297527 TGATCTGCTTTGTTGCCATACTATG 59.702 40.000 0.00 0.00 0.00 2.23
2987 5941 4.588899 TCTGCTTTGTTGCCATACTATGT 58.411 39.130 0.00 0.00 0.00 2.29
2988 5942 5.009631 TCTGCTTTGTTGCCATACTATGTT 58.990 37.500 0.00 0.00 0.00 2.71
2989 5943 5.123820 TCTGCTTTGTTGCCATACTATGTTC 59.876 40.000 0.00 0.00 0.00 3.18
2990 5944 5.009631 TGCTTTGTTGCCATACTATGTTCT 58.990 37.500 0.00 0.00 0.00 3.01
2991 5945 5.106197 TGCTTTGTTGCCATACTATGTTCTG 60.106 40.000 0.00 0.00 0.00 3.02
2992 5946 5.106157 GCTTTGTTGCCATACTATGTTCTGT 60.106 40.000 0.00 0.00 0.00 3.41
2993 5947 5.878332 TTGTTGCCATACTATGTTCTGTG 57.122 39.130 0.00 0.00 0.00 3.66
2994 5948 4.905429 TGTTGCCATACTATGTTCTGTGT 58.095 39.130 0.00 0.00 0.00 3.72
2995 5949 4.935205 TGTTGCCATACTATGTTCTGTGTC 59.065 41.667 0.00 0.00 0.00 3.67
2996 5950 5.178797 GTTGCCATACTATGTTCTGTGTCT 58.821 41.667 0.00 0.00 0.00 3.41
2997 5951 5.420725 TGCCATACTATGTTCTGTGTCTT 57.579 39.130 0.00 0.00 0.00 3.01
2998 5952 6.538945 TGCCATACTATGTTCTGTGTCTTA 57.461 37.500 0.00 0.00 0.00 2.10
2999 5953 6.941857 TGCCATACTATGTTCTGTGTCTTAA 58.058 36.000 0.00 0.00 0.00 1.85
3000 5954 7.041721 TGCCATACTATGTTCTGTGTCTTAAG 58.958 38.462 0.00 0.00 0.00 1.85
3001 5955 7.093509 TGCCATACTATGTTCTGTGTCTTAAGA 60.094 37.037 0.00 0.00 0.00 2.10
3002 5956 7.764443 GCCATACTATGTTCTGTGTCTTAAGAA 59.236 37.037 6.78 0.00 0.00 2.52
3003 5957 9.823647 CCATACTATGTTCTGTGTCTTAAGAAT 57.176 33.333 6.78 0.00 35.03 2.40
3005 5959 7.602517 ACTATGTTCTGTGTCTTAAGAATGC 57.397 36.000 6.78 1.20 35.03 3.56
3006 5960 7.390027 ACTATGTTCTGTGTCTTAAGAATGCT 58.610 34.615 6.78 0.00 35.03 3.79
3007 5961 6.734104 ATGTTCTGTGTCTTAAGAATGCTC 57.266 37.500 6.78 0.00 35.03 4.26
3008 5962 5.858381 TGTTCTGTGTCTTAAGAATGCTCT 58.142 37.500 6.78 0.00 35.03 4.09
3009 5963 5.928839 TGTTCTGTGTCTTAAGAATGCTCTC 59.071 40.000 6.78 0.00 35.03 3.20
3010 5964 5.991933 TCTGTGTCTTAAGAATGCTCTCT 57.008 39.130 6.78 0.00 0.00 3.10
3011 5965 5.718146 TCTGTGTCTTAAGAATGCTCTCTG 58.282 41.667 6.78 0.53 0.00 3.35
3012 5966 4.825422 TGTGTCTTAAGAATGCTCTCTGG 58.175 43.478 6.78 0.00 0.00 3.86
3013 5967 4.528206 TGTGTCTTAAGAATGCTCTCTGGA 59.472 41.667 6.78 0.00 0.00 3.86
3014 5968 5.188555 TGTGTCTTAAGAATGCTCTCTGGAT 59.811 40.000 6.78 0.00 0.00 3.41
3015 5969 6.381133 TGTGTCTTAAGAATGCTCTCTGGATA 59.619 38.462 6.78 0.00 0.00 2.59
3016 5970 7.070447 TGTGTCTTAAGAATGCTCTCTGGATAT 59.930 37.037 6.78 0.00 0.00 1.63
3017 5971 8.580720 GTGTCTTAAGAATGCTCTCTGGATATA 58.419 37.037 6.78 0.00 0.00 0.86
3018 5972 9.319060 TGTCTTAAGAATGCTCTCTGGATATAT 57.681 33.333 6.78 0.00 0.00 0.86
3024 5978 9.857656 AAGAATGCTCTCTGGATATATTTTGAA 57.142 29.630 0.00 0.00 0.00 2.69
3025 5979 9.857656 AGAATGCTCTCTGGATATATTTTGAAA 57.142 29.630 0.00 0.00 0.00 2.69
3028 5982 8.806429 TGCTCTCTGGATATATTTTGAAAACA 57.194 30.769 0.00 0.00 0.00 2.83
3029 5983 9.241919 TGCTCTCTGGATATATTTTGAAAACAA 57.758 29.630 0.00 0.00 0.00 2.83
3047 6001 9.791820 TGAAAACAATGAAGTATATGAAGCATG 57.208 29.630 0.00 0.00 0.00 4.06
3050 6004 7.741027 ACAATGAAGTATATGAAGCATGAGG 57.259 36.000 0.00 0.00 0.00 3.86
3051 6005 6.206243 ACAATGAAGTATATGAAGCATGAGGC 59.794 38.462 0.00 0.00 45.30 4.70
3090 6044 9.972106 AAGAAGAGAAATCTATTGGATTGAAGT 57.028 29.630 0.00 0.00 43.17 3.01
3091 6045 9.393512 AGAAGAGAAATCTATTGGATTGAAGTG 57.606 33.333 0.00 0.00 43.17 3.16
3092 6046 7.565323 AGAGAAATCTATTGGATTGAAGTGC 57.435 36.000 0.00 0.00 43.17 4.40
3093 6047 6.545298 AGAGAAATCTATTGGATTGAAGTGCC 59.455 38.462 0.00 0.00 43.17 5.01
3094 6048 6.189859 AGAAATCTATTGGATTGAAGTGCCA 58.810 36.000 0.00 0.00 43.17 4.92
3095 6049 6.837568 AGAAATCTATTGGATTGAAGTGCCAT 59.162 34.615 0.00 0.00 43.17 4.40
3096 6050 7.343833 AGAAATCTATTGGATTGAAGTGCCATT 59.656 33.333 0.00 0.00 43.17 3.16
3097 6051 7.427989 AATCTATTGGATTGAAGTGCCATTT 57.572 32.000 0.00 0.00 42.46 2.32
3098 6052 6.855763 TCTATTGGATTGAAGTGCCATTTT 57.144 33.333 0.00 0.00 0.00 1.82
3099 6053 7.243604 TCTATTGGATTGAAGTGCCATTTTT 57.756 32.000 0.00 0.00 0.00 1.94
3100 6054 7.098477 TCTATTGGATTGAAGTGCCATTTTTG 58.902 34.615 0.00 0.00 0.00 2.44
3101 6055 4.952071 TGGATTGAAGTGCCATTTTTGA 57.048 36.364 0.00 0.00 0.00 2.69
3102 6056 4.630111 TGGATTGAAGTGCCATTTTTGAC 58.370 39.130 0.00 0.00 0.00 3.18
3103 6057 4.100653 TGGATTGAAGTGCCATTTTTGACA 59.899 37.500 0.00 0.00 0.00 3.58
3104 6058 5.055812 GGATTGAAGTGCCATTTTTGACAA 58.944 37.500 0.00 0.00 0.00 3.18
3105 6059 5.526846 GGATTGAAGTGCCATTTTTGACAAA 59.473 36.000 0.00 0.00 0.00 2.83
3106 6060 6.038050 GGATTGAAGTGCCATTTTTGACAAAA 59.962 34.615 9.30 9.30 36.30 2.44
3107 6061 6.998968 TTGAAGTGCCATTTTTGACAAAAT 57.001 29.167 13.90 2.60 42.37 1.82
3108 6062 8.674263 ATTGAAGTGCCATTTTTGACAAAATA 57.326 26.923 13.90 6.17 40.09 1.40
3109 6063 8.674263 TTGAAGTGCCATTTTTGACAAAATAT 57.326 26.923 13.90 8.00 40.09 1.28
3110 6064 8.085720 TGAAGTGCCATTTTTGACAAAATATG 57.914 30.769 13.90 17.00 40.09 1.78
3111 6065 6.484818 AGTGCCATTTTTGACAAAATATGC 57.515 33.333 13.90 15.19 40.09 3.14
3112 6066 5.996513 AGTGCCATTTTTGACAAAATATGCA 59.003 32.000 19.26 19.26 41.92 3.96
3113 6067 6.655848 AGTGCCATTTTTGACAAAATATGCAT 59.344 30.769 22.96 3.79 43.76 3.96
3114 6068 7.823310 AGTGCCATTTTTGACAAAATATGCATA 59.177 29.630 22.96 9.27 43.76 3.14
3115 6069 8.614346 GTGCCATTTTTGACAAAATATGCATAT 58.386 29.630 22.96 13.63 43.76 1.78
3116 6070 9.828039 TGCCATTTTTGACAAAATATGCATATA 57.172 25.926 19.39 0.00 40.68 0.86
3127 6081 9.480053 ACAAAATATGCATATATTTGTTCCAGC 57.520 29.630 29.81 0.00 44.64 4.85
3128 6082 8.641155 CAAAATATGCATATATTTGTTCCAGCG 58.359 33.333 26.16 12.58 44.64 5.18
3129 6083 7.452880 AATATGCATATATTTGTTCCAGCGT 57.547 32.000 19.39 0.00 36.33 5.07
3130 6084 4.811555 TGCATATATTTGTTCCAGCGTC 57.188 40.909 0.00 0.00 0.00 5.19
3131 6085 3.563808 TGCATATATTTGTTCCAGCGTCC 59.436 43.478 0.00 0.00 0.00 4.79
3132 6086 3.563808 GCATATATTTGTTCCAGCGTCCA 59.436 43.478 0.00 0.00 0.00 4.02
3133 6087 4.036262 GCATATATTTGTTCCAGCGTCCAA 59.964 41.667 0.00 0.00 0.00 3.53
3134 6088 5.278463 GCATATATTTGTTCCAGCGTCCAAT 60.278 40.000 0.00 0.00 0.00 3.16
3135 6089 4.637483 ATATTTGTTCCAGCGTCCAATG 57.363 40.909 0.00 0.00 0.00 2.82
3136 6090 1.686355 TTTGTTCCAGCGTCCAATGT 58.314 45.000 0.00 0.00 0.00 2.71
3137 6091 2.552599 TTGTTCCAGCGTCCAATGTA 57.447 45.000 0.00 0.00 0.00 2.29
3138 6092 2.552599 TGTTCCAGCGTCCAATGTAA 57.447 45.000 0.00 0.00 0.00 2.41
3139 6093 2.852449 TGTTCCAGCGTCCAATGTAAA 58.148 42.857 0.00 0.00 0.00 2.01
3140 6094 3.215151 TGTTCCAGCGTCCAATGTAAAA 58.785 40.909 0.00 0.00 0.00 1.52
3141 6095 3.823873 TGTTCCAGCGTCCAATGTAAAAT 59.176 39.130 0.00 0.00 0.00 1.82
3142 6096 5.004448 TGTTCCAGCGTCCAATGTAAAATA 58.996 37.500 0.00 0.00 0.00 1.40
3143 6097 5.650266 TGTTCCAGCGTCCAATGTAAAATAT 59.350 36.000 0.00 0.00 0.00 1.28
3144 6098 5.749596 TCCAGCGTCCAATGTAAAATATG 57.250 39.130 0.00 0.00 0.00 1.78
3145 6099 5.189928 TCCAGCGTCCAATGTAAAATATGT 58.810 37.500 0.00 0.00 0.00 2.29
3146 6100 5.295787 TCCAGCGTCCAATGTAAAATATGTC 59.704 40.000 0.00 0.00 0.00 3.06
3147 6101 5.065859 CCAGCGTCCAATGTAAAATATGTCA 59.934 40.000 0.00 0.00 0.00 3.58
3148 6102 6.404184 CCAGCGTCCAATGTAAAATATGTCAA 60.404 38.462 0.00 0.00 0.00 3.18
3149 6103 7.195646 CAGCGTCCAATGTAAAATATGTCAAT 58.804 34.615 0.00 0.00 0.00 2.57
3150 6104 7.166307 CAGCGTCCAATGTAAAATATGTCAATG 59.834 37.037 0.00 0.00 0.00 2.82
3151 6105 6.074888 GCGTCCAATGTAAAATATGTCAATGC 60.075 38.462 0.00 0.00 0.00 3.56
3152 6106 7.195646 CGTCCAATGTAAAATATGTCAATGCT 58.804 34.615 0.00 0.00 0.00 3.79
3153 6107 8.341903 CGTCCAATGTAAAATATGTCAATGCTA 58.658 33.333 0.00 0.00 0.00 3.49
3154 6108 9.450807 GTCCAATGTAAAATATGTCAATGCTAC 57.549 33.333 0.00 0.00 0.00 3.58
3155 6109 9.183368 TCCAATGTAAAATATGTCAATGCTACA 57.817 29.630 0.00 0.00 0.00 2.74
3156 6110 9.800433 CCAATGTAAAATATGTCAATGCTACAA 57.200 29.630 0.00 0.00 0.00 2.41
3176 6130 3.907894 AAAAATGCGTAACATGACCGT 57.092 38.095 0.00 0.00 39.60 4.83
3177 6131 3.465122 AAAATGCGTAACATGACCGTC 57.535 42.857 0.00 0.00 39.60 4.79
3178 6132 2.380084 AATGCGTAACATGACCGTCT 57.620 45.000 0.00 0.00 39.60 4.18
3179 6133 3.513680 AATGCGTAACATGACCGTCTA 57.486 42.857 0.00 0.00 39.60 2.59
3180 6134 3.728076 ATGCGTAACATGACCGTCTAT 57.272 42.857 0.00 0.00 37.70 1.98
3181 6135 2.804647 TGCGTAACATGACCGTCTATG 58.195 47.619 0.00 5.01 0.00 2.23
3182 6136 1.521423 GCGTAACATGACCGTCTATGC 59.479 52.381 0.00 0.00 0.00 3.14
3183 6137 2.124903 CGTAACATGACCGTCTATGCC 58.875 52.381 0.00 0.00 0.00 4.40
3184 6138 2.480845 GTAACATGACCGTCTATGCCC 58.519 52.381 0.00 0.00 0.00 5.36
3186 6140 1.956170 CATGACCGTCTATGCCCGC 60.956 63.158 0.00 0.00 0.00 6.13
3189 6143 3.365291 GACCGTCTATGCCCGCACA 62.365 63.158 0.00 0.00 0.00 4.57
3194 6148 1.132262 CGTCTATGCCCGCACAAAAAT 59.868 47.619 0.00 0.00 0.00 1.82
3199 6153 2.430546 TGCCCGCACAAAAATAAGTG 57.569 45.000 0.00 0.00 38.74 3.16
3203 6157 3.313690 CCCGCACAAAAATAAGTGGAAC 58.686 45.455 0.00 0.00 36.29 3.62
3204 6158 3.243569 CCCGCACAAAAATAAGTGGAACA 60.244 43.478 0.00 0.00 41.43 3.18
3206 6160 4.261405 CCGCACAAAAATAAGTGGAACAGA 60.261 41.667 0.00 0.00 41.80 3.41
3208 6162 5.920273 CGCACAAAAATAAGTGGAACAGATT 59.080 36.000 0.00 0.00 41.80 2.40
3209 6163 6.129115 CGCACAAAAATAAGTGGAACAGATTG 60.129 38.462 0.00 0.00 41.80 2.67
3211 6165 7.096065 GCACAAAAATAAGTGGAACAGATTGAC 60.096 37.037 0.00 0.00 41.80 3.18
3212 6166 7.920151 CACAAAAATAAGTGGAACAGATTGACA 59.080 33.333 0.00 0.00 41.80 3.58
3215 6169 5.824904 ATAAGTGGAACAGATTGACATGC 57.175 39.130 0.00 0.00 41.80 4.06
3220 6174 4.097437 GTGGAACAGATTGACATGCATGAT 59.903 41.667 32.75 16.10 41.80 2.45
3221 6175 4.707934 TGGAACAGATTGACATGCATGATT 59.292 37.500 32.75 11.94 0.00 2.57
3222 6176 5.041287 GGAACAGATTGACATGCATGATTG 58.959 41.667 32.75 20.00 0.00 2.67
3224 6178 3.181479 ACAGATTGACATGCATGATTGGC 60.181 43.478 32.75 17.42 0.00 4.52
3226 6180 0.456628 TTGACATGCATGATTGGCGG 59.543 50.000 32.75 4.14 0.00 6.13
3227 6181 1.299620 GACATGCATGATTGGCGGC 60.300 57.895 32.75 0.00 0.00 6.53
3230 6184 1.365999 ATGCATGATTGGCGGCATG 59.634 52.632 14.32 9.47 44.64 4.06
3231 6185 2.028484 GCATGATTGGCGGCATGG 59.972 61.111 14.32 1.85 41.58 3.66
3232 6186 2.788640 GCATGATTGGCGGCATGGT 61.789 57.895 14.32 1.45 41.58 3.55
3233 6187 1.817881 CATGATTGGCGGCATGGTT 59.182 52.632 14.32 0.00 38.52 3.67
3236 6190 2.037049 ATTGGCGGCATGGTTCCA 59.963 55.556 14.32 0.00 0.00 3.53
3237 6191 2.283472 GATTGGCGGCATGGTTCCAC 62.283 60.000 14.32 0.00 0.00 4.02
3240 6194 2.569354 GGCGGCATGGTTCCACAAA 61.569 57.895 3.07 0.00 0.00 2.83
3242 6196 0.814457 GCGGCATGGTTCCACAAATA 59.186 50.000 0.00 0.00 0.00 1.40
3243 6197 1.203523 GCGGCATGGTTCCACAAATAA 59.796 47.619 0.00 0.00 0.00 1.40
3244 6198 2.353208 GCGGCATGGTTCCACAAATAAA 60.353 45.455 0.00 0.00 0.00 1.40
3245 6199 3.678529 GCGGCATGGTTCCACAAATAAAT 60.679 43.478 0.00 0.00 0.00 1.40
3246 6200 4.502962 CGGCATGGTTCCACAAATAAATT 58.497 39.130 0.00 0.00 0.00 1.82
3247 6201 5.655488 CGGCATGGTTCCACAAATAAATTA 58.345 37.500 0.00 0.00 0.00 1.40
3249 6203 6.627065 CGGCATGGTTCCACAAATAAATTAGT 60.627 38.462 0.00 0.00 0.00 2.24
3250 6204 6.534793 GGCATGGTTCCACAAATAAATTAGTG 59.465 38.462 0.00 0.00 0.00 2.74
3251 6205 6.035975 GCATGGTTCCACAAATAAATTAGTGC 59.964 38.462 0.00 0.00 0.00 4.40
3252 6206 6.656632 TGGTTCCACAAATAAATTAGTGCA 57.343 33.333 0.00 0.00 0.00 4.57
3272 6226 8.487313 AGTGCATAAATTGTAACTTACGATCA 57.513 30.769 2.62 0.00 31.61 2.92
3273 6227 8.604035 AGTGCATAAATTGTAACTTACGATCAG 58.396 33.333 2.62 0.00 31.61 2.90
3274 6228 8.600625 GTGCATAAATTGTAACTTACGATCAGA 58.399 33.333 2.62 0.00 31.61 3.27
3275 6229 8.600625 TGCATAAATTGTAACTTACGATCAGAC 58.399 33.333 2.62 0.00 31.61 3.51
3276 6230 8.818057 GCATAAATTGTAACTTACGATCAGACT 58.182 33.333 2.62 0.00 31.61 3.24
3295 6249 2.874701 ACTTGATGATGCGGCATAGTTC 59.125 45.455 16.66 12.92 0.00 3.01
3330 6286 3.977134 ATAGATAGTGGGCTGCATCTG 57.023 47.619 0.50 0.00 0.00 2.90
3366 6322 9.125026 AGAGGATTTATAGCAATACAACAAAGG 57.875 33.333 0.00 0.00 0.00 3.11
3433 6394 9.342308 GAATTTCATAGGAATATTGGTGAGTCA 57.658 33.333 0.00 0.00 31.93 3.41
3459 6441 4.103153 TCTTTGTTTCAGATGACCCAGTCT 59.897 41.667 0.00 0.00 33.15 3.24
3524 6704 7.444703 AATGCCCTAAGAGTCTCTTTAGATT 57.555 36.000 20.03 9.07 37.89 2.40
3525 6705 8.554490 AATGCCCTAAGAGTCTCTTTAGATTA 57.446 34.615 20.03 0.58 37.89 1.75
3590 6770 6.266131 TGAAAGTCCATTGCCTAATAGGAT 57.734 37.500 11.13 0.00 37.67 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.608308 CCCCTCTTTTCCCGTTGGAC 60.608 60.000 0.00 0.00 41.57 4.02
89 94 2.046892 TTCAGCTTCGCCTCTGCC 60.047 61.111 0.00 0.00 0.00 4.85
186 192 0.663568 ACTGACGAAACGCGAGGAAG 60.664 55.000 15.93 2.08 44.57 3.46
187 193 0.937699 CACTGACGAAACGCGAGGAA 60.938 55.000 15.93 0.00 44.57 3.36
188 194 1.371267 CACTGACGAAACGCGAGGA 60.371 57.895 15.93 0.00 44.57 3.71
189 195 2.372690 CCACTGACGAAACGCGAGG 61.373 63.158 15.93 0.31 44.57 4.63
206 212 3.750130 CCTTCACATGCTAGTATCATGCC 59.250 47.826 12.79 0.00 43.71 4.40
218 224 2.570181 GCAGCACCCTTCACATGC 59.430 61.111 0.00 0.00 39.74 4.06
267 285 3.006659 TGTGCAAAACTATCGCCAAAC 57.993 42.857 0.00 0.00 0.00 2.93
305 324 1.023502 GGCTCTCTACGACCTGTACC 58.976 60.000 0.00 0.00 0.00 3.34
306 325 1.747709 TGGCTCTCTACGACCTGTAC 58.252 55.000 0.00 0.00 0.00 2.90
307 326 2.092592 TCATGGCTCTCTACGACCTGTA 60.093 50.000 0.00 0.00 0.00 2.74
308 327 1.107114 CATGGCTCTCTACGACCTGT 58.893 55.000 0.00 0.00 0.00 4.00
309 328 1.336440 CTCATGGCTCTCTACGACCTG 59.664 57.143 0.00 0.00 0.00 4.00
312 331 1.335496 GGTCTCATGGCTCTCTACGAC 59.665 57.143 0.00 0.00 0.00 4.34
399 418 3.797039 TGCGAACCTGAATTGAGGATAG 58.203 45.455 18.67 7.46 36.51 2.08
466 485 4.813750 ACATAACCGCTAACAACCTAGT 57.186 40.909 0.00 0.00 0.00 2.57
619 642 4.278669 GTGTTAGAGACTGTCTGTTCCTGA 59.721 45.833 16.28 0.00 36.64 3.86
621 644 4.279671 CAGTGTTAGAGACTGTCTGTTCCT 59.720 45.833 16.28 8.43 36.79 3.36
665 697 2.033550 GGAGACCTGATACACAGCTACG 59.966 54.545 0.00 0.00 44.52 3.51
666 698 3.024547 TGGAGACCTGATACACAGCTAC 58.975 50.000 0.00 0.00 44.52 3.58
667 699 3.382083 TGGAGACCTGATACACAGCTA 57.618 47.619 0.00 0.00 44.52 3.32
668 700 2.238084 TGGAGACCTGATACACAGCT 57.762 50.000 0.00 0.00 44.52 4.24
669 701 2.898705 CTTGGAGACCTGATACACAGC 58.101 52.381 0.00 0.00 44.52 4.40
670 702 2.499289 AGCTTGGAGACCTGATACACAG 59.501 50.000 0.00 0.00 45.36 3.66
671 703 2.540383 AGCTTGGAGACCTGATACACA 58.460 47.619 0.00 0.00 0.00 3.72
672 704 3.618690 AAGCTTGGAGACCTGATACAC 57.381 47.619 0.00 0.00 0.00 2.90
678 719 1.000938 GTGCAAAAGCTTGGAGACCTG 60.001 52.381 0.00 0.00 32.99 4.00
706 747 0.543749 GGTCCTTCCCATCCTCTGTG 59.456 60.000 0.00 0.00 0.00 3.66
717 758 1.452108 CAGGCGATTGGGTCCTTCC 60.452 63.158 0.00 0.00 0.00 3.46
718 759 2.115291 GCAGGCGATTGGGTCCTTC 61.115 63.158 0.00 0.00 0.00 3.46
719 760 2.044946 GCAGGCGATTGGGTCCTT 60.045 61.111 0.00 0.00 0.00 3.36
720 761 4.115199 GGCAGGCGATTGGGTCCT 62.115 66.667 0.00 0.00 0.00 3.85
721 762 4.115199 AGGCAGGCGATTGGGTCC 62.115 66.667 0.00 0.00 0.00 4.46
722 763 2.514824 GAGGCAGGCGATTGGGTC 60.515 66.667 0.00 0.00 0.00 4.46
723 764 2.142292 AAAGAGGCAGGCGATTGGGT 62.142 55.000 0.00 0.00 0.00 4.51
724 765 1.379044 AAAGAGGCAGGCGATTGGG 60.379 57.895 0.00 0.00 0.00 4.12
725 766 0.393537 AGAAAGAGGCAGGCGATTGG 60.394 55.000 0.00 0.00 0.00 3.16
726 767 1.131883 CAAGAAAGAGGCAGGCGATTG 59.868 52.381 0.00 0.00 0.00 2.67
727 768 1.457346 CAAGAAAGAGGCAGGCGATT 58.543 50.000 0.00 0.00 0.00 3.34
728 769 0.393537 CCAAGAAAGAGGCAGGCGAT 60.394 55.000 0.00 0.00 0.00 4.58
729 770 1.003355 CCAAGAAAGAGGCAGGCGA 60.003 57.895 0.00 0.00 0.00 5.54
730 771 1.301677 GACCAAGAAAGAGGCAGGCG 61.302 60.000 0.00 0.00 0.00 5.52
731 772 0.037447 AGACCAAGAAAGAGGCAGGC 59.963 55.000 0.00 0.00 0.00 4.85
732 773 2.575805 AAGACCAAGAAAGAGGCAGG 57.424 50.000 0.00 0.00 0.00 4.85
733 774 4.633565 GTCATAAGACCAAGAAAGAGGCAG 59.366 45.833 0.00 0.00 38.89 4.85
734 775 4.579869 GTCATAAGACCAAGAAAGAGGCA 58.420 43.478 0.00 0.00 38.89 4.75
747 788 5.692204 CGTCCAAGATATGTGGTCATAAGAC 59.308 44.000 2.66 0.00 44.21 3.01
748 789 5.739070 GCGTCCAAGATATGTGGTCATAAGA 60.739 44.000 2.66 0.00 39.55 2.10
749 790 4.449068 GCGTCCAAGATATGTGGTCATAAG 59.551 45.833 2.66 0.00 39.55 1.73
767 808 7.919621 ACTATCAGTTTATACTTTACAGCGTCC 59.080 37.037 0.00 0.00 30.26 4.79
781 822 7.682741 GCATGCAACAATCCACTATCAGTTTAT 60.683 37.037 14.21 0.00 0.00 1.40
808 849 7.542811 GATCGCTGCGATAGTTCGATTTCAC 62.543 48.000 34.31 15.26 47.00 3.18
818 859 1.576920 CTCCGATCGCTGCGATAGT 59.423 57.895 34.31 16.93 47.00 2.12
828 869 1.609072 TGACCATAGAAGCTCCGATCG 59.391 52.381 8.51 8.51 0.00 3.69
898 939 8.007405 ACTAAATTTCTAAATGTACCATGGCC 57.993 34.615 13.04 2.93 0.00 5.36
919 960 8.967918 ACACTCAGATAACTAGCATGTAACTAA 58.032 33.333 0.00 0.00 0.00 2.24
933 974 9.224058 GACTCGTATAGAAAACACTCAGATAAC 57.776 37.037 0.00 0.00 0.00 1.89
1011 1052 3.087031 CCTTGAACGACTCCTGTACCTA 58.913 50.000 0.00 0.00 0.00 3.08
1045 1086 5.499004 AATGTTAGCACTTCTGAGGGTAA 57.501 39.130 0.00 0.00 0.00 2.85
1047 1088 5.045578 ACATAATGTTAGCACTTCTGAGGGT 60.046 40.000 0.00 0.00 0.00 4.34
1048 1089 5.431765 ACATAATGTTAGCACTTCTGAGGG 58.568 41.667 0.00 0.00 0.00 4.30
1057 1098 6.007936 TGGACACAAACATAATGTTAGCAC 57.992 37.500 0.00 0.00 40.14 4.40
1064 1105 8.461222 ACATAGAACATGGACACAAACATAATG 58.539 33.333 0.00 0.00 0.00 1.90
1105 1146 7.929941 ACTCCTTAAAATTAGAGCCAGAAAG 57.070 36.000 0.00 0.00 0.00 2.62
1124 1165 9.730705 CACATTACATGGATATCAATTACTCCT 57.269 33.333 4.83 0.00 33.60 3.69
1303 1351 0.588233 GCAATCTTCTCGCATGCGTG 60.588 55.000 36.50 33.44 40.74 5.34
1311 1359 5.352569 AGTGGAATTGTTAGCAATCTTCTCG 59.647 40.000 5.19 0.00 43.89 4.04
1583 1631 5.698545 GCTTGGAAGGCTAATCTGTACATAG 59.301 44.000 0.00 0.00 0.00 2.23
1646 1695 1.530013 GGCATCAACCTGCTGCTGTT 61.530 55.000 0.00 1.60 39.28 3.16
1707 1756 4.471904 TGAGGTAGCATTGTTTCGATCT 57.528 40.909 0.00 0.00 0.00 2.75
1778 1829 8.927411 CCAAATAAATTATTGGGGATCTGAAGT 58.073 33.333 10.65 0.00 41.93 3.01
1991 2046 4.402474 TCGGATGTGATATGAAGTGTCAGT 59.598 41.667 0.00 0.00 37.14 3.41
2012 2067 8.992073 TCCTGTATAATCAAATGTCATCAATCG 58.008 33.333 0.00 0.00 0.00 3.34
2018 2073 7.941238 CCTCCTTCCTGTATAATCAAATGTCAT 59.059 37.037 0.00 0.00 0.00 3.06
2147 2211 1.464429 CTACGCATGTGACGACGAGC 61.464 60.000 14.43 0.00 0.00 5.03
2156 2220 3.579709 GGGAGTATGATCTACGCATGTG 58.420 50.000 4.30 4.30 0.00 3.21
2160 2224 2.375014 TGGGGAGTATGATCTACGCA 57.625 50.000 0.00 0.00 38.58 5.24
2179 2243 7.385894 AGAGTAGGATTGCCTTCTTTCATAT 57.614 36.000 0.00 0.00 43.90 1.78
2180 2244 6.183361 GGAGAGTAGGATTGCCTTCTTTCATA 60.183 42.308 9.97 0.00 43.90 2.15
2188 2252 2.577772 AGGGAGAGTAGGATTGCCTT 57.422 50.000 0.00 0.00 43.90 4.35
2193 2257 3.142977 TCTGCCATAGGGAGAGTAGGATT 59.857 47.826 2.92 0.00 45.03 3.01
2196 2260 2.685106 TCTGCCATAGGGAGAGTAGG 57.315 55.000 2.92 0.00 45.03 3.18
2237 2301 0.900647 CAGGGAGACTCCGACCTGTT 60.901 60.000 15.46 0.00 44.21 3.16
2256 2320 2.707849 TAGGACCTTCGCCTGTCGC 61.708 63.158 0.00 0.00 36.96 5.19
2347 2411 1.433879 CGACCTCCGCCTTCTGTAG 59.566 63.158 0.00 0.00 0.00 2.74
2374 2438 2.254546 ATGCTGAAACAGAACGGTCA 57.745 45.000 1.87 0.00 32.44 4.02
2491 2555 3.938334 GAGAACAGCTCCTTGATTCTTCC 59.062 47.826 0.00 0.00 37.69 3.46
2532 2596 1.582968 CTGCGTGATGCCTTGCTTT 59.417 52.632 0.00 0.00 45.60 3.51
2629 2693 1.963338 GCTTGCTGAGGTTGAGCGT 60.963 57.895 0.00 0.00 39.47 5.07
2714 2779 5.009610 ACCATCCACACTGTTTACAAACATC 59.990 40.000 7.91 0.00 46.71 3.06
2724 2789 3.197766 ACGATCATACCATCCACACTGTT 59.802 43.478 0.00 0.00 0.00 3.16
2727 2792 2.483714 GCACGATCATACCATCCACACT 60.484 50.000 0.00 0.00 0.00 3.55
2808 5659 7.958053 AAACAGAAGTATAAAGTACAGCGTT 57.042 32.000 0.00 0.00 0.00 4.84
2810 5661 8.014322 TGAAAACAGAAGTATAAAGTACAGCG 57.986 34.615 0.00 0.00 0.00 5.18
2820 5671 7.335924 GCCAACCATACTGAAAACAGAAGTATA 59.664 37.037 0.00 0.00 35.45 1.47
2838 5695 3.448301 CCATGATGTAAACTGCCAACCAT 59.552 43.478 0.00 0.00 0.00 3.55
2871 5728 3.181467 GCAGATCAGCAGAACATAGTCCT 60.181 47.826 5.05 0.00 0.00 3.85
2875 5829 4.634883 ACAAAGCAGATCAGCAGAACATAG 59.365 41.667 13.03 0.00 36.85 2.23
2895 5849 7.210873 ACCTTAAAACACAGAAAACACAACAA 58.789 30.769 0.00 0.00 0.00 2.83
2898 5852 8.962679 AGATACCTTAAAACACAGAAAACACAA 58.037 29.630 0.00 0.00 0.00 3.33
2902 5856 7.649057 AGCAGATACCTTAAAACACAGAAAAC 58.351 34.615 0.00 0.00 0.00 2.43
2903 5857 7.040686 GGAGCAGATACCTTAAAACACAGAAAA 60.041 37.037 0.00 0.00 0.00 2.29
2905 5859 5.938125 GGAGCAGATACCTTAAAACACAGAA 59.062 40.000 0.00 0.00 0.00 3.02
2906 5860 5.248477 AGGAGCAGATACCTTAAAACACAGA 59.752 40.000 0.00 0.00 31.95 3.41
2907 5861 5.491982 AGGAGCAGATACCTTAAAACACAG 58.508 41.667 0.00 0.00 31.95 3.66
2909 5863 6.174049 AGAAGGAGCAGATACCTTAAAACAC 58.826 40.000 0.00 0.00 45.08 3.32
2911 5865 5.818336 GGAGAAGGAGCAGATACCTTAAAAC 59.182 44.000 0.00 0.00 45.08 2.43
2914 5868 4.620723 TGGAGAAGGAGCAGATACCTTAA 58.379 43.478 0.00 0.00 45.08 1.85
2915 5869 4.265856 TGGAGAAGGAGCAGATACCTTA 57.734 45.455 0.00 0.00 45.08 2.69
2917 5871 2.856760 TGGAGAAGGAGCAGATACCT 57.143 50.000 0.00 0.00 38.23 3.08
2918 5872 3.467374 CTTGGAGAAGGAGCAGATACC 57.533 52.381 0.00 0.00 0.00 2.73
2928 5882 6.712276 AGTACAAAACTATCCTTGGAGAAGG 58.288 40.000 0.00 0.00 42.90 3.46
2929 5883 9.319143 CATAGTACAAAACTATCCTTGGAGAAG 57.681 37.037 0.00 0.00 46.50 2.85
2934 5888 8.883731 CAGAACATAGTACAAAACTATCCTTGG 58.116 37.037 0.00 0.00 46.50 3.61
2937 5891 7.766278 CAGCAGAACATAGTACAAAACTATCCT 59.234 37.037 0.00 0.00 46.50 3.24
2938 5892 7.764443 TCAGCAGAACATAGTACAAAACTATCC 59.236 37.037 0.00 0.00 46.50 2.59
2942 5896 7.332926 CAGATCAGCAGAACATAGTACAAAACT 59.667 37.037 0.00 0.00 42.62 2.66
2944 5898 6.092670 GCAGATCAGCAGAACATAGTACAAAA 59.907 38.462 5.05 0.00 0.00 2.44
2946 5900 5.105187 AGCAGATCAGCAGAACATAGTACAA 60.105 40.000 13.03 0.00 36.85 2.41
2947 5901 4.403752 AGCAGATCAGCAGAACATAGTACA 59.596 41.667 13.03 0.00 36.85 2.90
2948 5902 4.942852 AGCAGATCAGCAGAACATAGTAC 58.057 43.478 13.03 0.00 36.85 2.73
2950 5904 4.484537 AAGCAGATCAGCAGAACATAGT 57.515 40.909 13.03 0.00 36.85 2.12
2951 5905 4.634883 ACAAAGCAGATCAGCAGAACATAG 59.365 41.667 13.03 0.00 36.85 2.23
2952 5906 4.582869 ACAAAGCAGATCAGCAGAACATA 58.417 39.130 13.03 0.00 36.85 2.29
2953 5907 3.418995 ACAAAGCAGATCAGCAGAACAT 58.581 40.909 13.03 0.00 36.85 2.71
2954 5908 2.854963 ACAAAGCAGATCAGCAGAACA 58.145 42.857 13.03 0.00 36.85 3.18
2955 5909 3.562505 CAACAAAGCAGATCAGCAGAAC 58.437 45.455 13.03 0.00 36.85 3.01
2957 5911 1.538512 GCAACAAAGCAGATCAGCAGA 59.461 47.619 13.03 0.00 36.85 4.26
2958 5912 1.402456 GGCAACAAAGCAGATCAGCAG 60.402 52.381 13.03 4.45 36.85 4.24
2960 5914 3.413522 GGCAACAAAGCAGATCAGC 57.586 52.632 1.07 1.07 35.83 4.26
2973 5927 5.178797 AGACACAGAACATAGTATGGCAAC 58.821 41.667 14.59 3.23 33.60 4.17
2974 5928 5.420725 AGACACAGAACATAGTATGGCAA 57.579 39.130 14.59 0.00 33.60 4.52
2975 5929 5.420725 AAGACACAGAACATAGTATGGCA 57.579 39.130 14.59 0.00 33.60 4.92
2976 5930 7.265673 TCTTAAGACACAGAACATAGTATGGC 58.734 38.462 14.59 6.18 33.60 4.40
2977 5931 9.823647 ATTCTTAAGACACAGAACATAGTATGG 57.176 33.333 14.59 0.00 31.80 2.74
2979 5933 9.319143 GCATTCTTAAGACACAGAACATAGTAT 57.681 33.333 4.18 0.00 31.80 2.12
2980 5934 8.531982 AGCATTCTTAAGACACAGAACATAGTA 58.468 33.333 4.18 0.00 31.80 1.82
2981 5935 7.390027 AGCATTCTTAAGACACAGAACATAGT 58.610 34.615 4.18 0.00 31.80 2.12
2982 5936 7.763528 AGAGCATTCTTAAGACACAGAACATAG 59.236 37.037 4.18 0.00 31.80 2.23
2983 5937 7.615403 AGAGCATTCTTAAGACACAGAACATA 58.385 34.615 4.18 0.00 31.80 2.29
2984 5938 6.471146 AGAGCATTCTTAAGACACAGAACAT 58.529 36.000 4.18 0.00 31.80 2.71
2985 5939 5.858381 AGAGCATTCTTAAGACACAGAACA 58.142 37.500 4.18 0.00 31.80 3.18
2986 5940 6.090628 CAGAGAGCATTCTTAAGACACAGAAC 59.909 42.308 4.18 0.00 31.80 3.01
2987 5941 6.162079 CAGAGAGCATTCTTAAGACACAGAA 58.838 40.000 4.18 0.00 32.53 3.02
2988 5942 5.337089 CCAGAGAGCATTCTTAAGACACAGA 60.337 44.000 4.18 0.00 32.53 3.41
2989 5943 4.869297 CCAGAGAGCATTCTTAAGACACAG 59.131 45.833 4.18 0.00 32.53 3.66
2990 5944 4.528206 TCCAGAGAGCATTCTTAAGACACA 59.472 41.667 4.18 0.00 32.53 3.72
2991 5945 5.078411 TCCAGAGAGCATTCTTAAGACAC 57.922 43.478 4.18 0.00 32.53 3.67
2992 5946 5.946942 ATCCAGAGAGCATTCTTAAGACA 57.053 39.130 4.18 0.00 32.53 3.41
2998 5952 9.857656 TTCAAAATATATCCAGAGAGCATTCTT 57.142 29.630 0.00 0.00 32.53 2.52
2999 5953 9.857656 TTTCAAAATATATCCAGAGAGCATTCT 57.142 29.630 0.00 0.00 36.01 2.40
3002 5956 9.412460 TGTTTTCAAAATATATCCAGAGAGCAT 57.588 29.630 0.00 0.00 0.00 3.79
3003 5957 8.806429 TGTTTTCAAAATATATCCAGAGAGCA 57.194 30.769 0.00 0.00 0.00 4.26
3021 5975 9.791820 CATGCTTCATATACTTCATTGTTTTCA 57.208 29.630 0.00 0.00 0.00 2.69
3024 5978 8.627403 CCTCATGCTTCATATACTTCATTGTTT 58.373 33.333 0.00 0.00 0.00 2.83
3025 5979 7.255381 GCCTCATGCTTCATATACTTCATTGTT 60.255 37.037 0.00 0.00 36.87 2.83
3026 5980 6.206243 GCCTCATGCTTCATATACTTCATTGT 59.794 38.462 0.00 0.00 36.87 2.71
3027 5981 6.206048 TGCCTCATGCTTCATATACTTCATTG 59.794 38.462 0.00 0.00 42.00 2.82
3028 5982 6.301486 TGCCTCATGCTTCATATACTTCATT 58.699 36.000 0.00 0.00 42.00 2.57
3029 5983 5.872963 TGCCTCATGCTTCATATACTTCAT 58.127 37.500 0.00 0.00 42.00 2.57
3030 5984 5.294734 TGCCTCATGCTTCATATACTTCA 57.705 39.130 0.00 0.00 42.00 3.02
3031 5985 6.624352 TTTGCCTCATGCTTCATATACTTC 57.376 37.500 0.00 0.00 42.00 3.01
3032 5986 7.592885 ATTTTGCCTCATGCTTCATATACTT 57.407 32.000 0.00 0.00 42.00 2.24
3033 5987 8.874744 ATATTTTGCCTCATGCTTCATATACT 57.125 30.769 0.00 0.00 42.00 2.12
3034 5988 9.918630 AAATATTTTGCCTCATGCTTCATATAC 57.081 29.630 0.00 0.00 42.00 1.47
3064 6018 9.972106 ACTTCAATCCAATAGATTTCTCTTCTT 57.028 29.630 0.00 0.00 42.86 2.52
3065 6019 9.393512 CACTTCAATCCAATAGATTTCTCTTCT 57.606 33.333 0.00 0.00 42.86 2.85
3066 6020 8.127954 GCACTTCAATCCAATAGATTTCTCTTC 58.872 37.037 0.00 0.00 42.86 2.87
3067 6021 7.067981 GGCACTTCAATCCAATAGATTTCTCTT 59.932 37.037 0.00 0.00 42.86 2.85
3068 6022 6.545298 GGCACTTCAATCCAATAGATTTCTCT 59.455 38.462 0.00 0.00 42.86 3.10
3069 6023 6.319658 TGGCACTTCAATCCAATAGATTTCTC 59.680 38.462 0.00 0.00 42.86 2.87
3070 6024 6.189859 TGGCACTTCAATCCAATAGATTTCT 58.810 36.000 0.00 0.00 42.86 2.52
3071 6025 6.455360 TGGCACTTCAATCCAATAGATTTC 57.545 37.500 0.00 0.00 42.86 2.17
3072 6026 7.427989 AATGGCACTTCAATCCAATAGATTT 57.572 32.000 0.00 0.00 42.86 2.17
3073 6027 7.427989 AAATGGCACTTCAATCCAATAGATT 57.572 32.000 0.00 0.00 46.54 2.40
3074 6028 7.427989 AAAATGGCACTTCAATCCAATAGAT 57.572 32.000 0.00 0.00 36.48 1.98
3075 6029 6.855763 AAAATGGCACTTCAATCCAATAGA 57.144 33.333 0.00 0.00 33.04 1.98
3076 6030 7.063780 GTCAAAAATGGCACTTCAATCCAATAG 59.936 37.037 0.00 0.00 33.04 1.73
3077 6031 6.873076 GTCAAAAATGGCACTTCAATCCAATA 59.127 34.615 0.00 0.00 33.04 1.90
3078 6032 5.702209 GTCAAAAATGGCACTTCAATCCAAT 59.298 36.000 0.00 0.00 33.04 3.16
3079 6033 5.055812 GTCAAAAATGGCACTTCAATCCAA 58.944 37.500 0.00 0.00 33.04 3.53
3080 6034 4.100653 TGTCAAAAATGGCACTTCAATCCA 59.899 37.500 0.00 0.00 0.00 3.41
3081 6035 4.630111 TGTCAAAAATGGCACTTCAATCC 58.370 39.130 0.00 0.00 0.00 3.01
3082 6036 6.601741 TTTGTCAAAAATGGCACTTCAATC 57.398 33.333 0.00 0.00 0.00 2.67
3083 6037 6.998968 TTTTGTCAAAAATGGCACTTCAAT 57.001 29.167 8.31 0.00 30.24 2.57
3084 6038 6.998968 ATTTTGTCAAAAATGGCACTTCAA 57.001 29.167 14.47 0.00 42.97 2.69
3085 6039 7.307870 GCATATTTTGTCAAAAATGGCACTTCA 60.308 33.333 14.47 0.00 44.04 3.02
3086 6040 7.017055 GCATATTTTGTCAAAAATGGCACTTC 58.983 34.615 14.47 3.85 44.04 3.01
3087 6041 6.485984 TGCATATTTTGTCAAAAATGGCACTT 59.514 30.769 20.60 6.01 44.07 3.16
3088 6042 5.996513 TGCATATTTTGTCAAAAATGGCACT 59.003 32.000 20.60 6.56 44.07 4.40
3089 6043 6.238610 TGCATATTTTGTCAAAAATGGCAC 57.761 33.333 20.60 11.91 44.07 5.01
3101 6055 9.480053 GCTGGAACAAATATATGCATATTTTGT 57.520 29.630 29.81 29.81 42.23 2.83
3102 6056 8.641155 CGCTGGAACAAATATATGCATATTTTG 58.359 33.333 29.06 29.06 42.23 2.44
3103 6057 8.359642 ACGCTGGAACAAATATATGCATATTTT 58.640 29.630 23.71 18.64 42.23 1.82
3104 6058 7.885297 ACGCTGGAACAAATATATGCATATTT 58.115 30.769 23.71 13.74 44.56 1.40
3105 6059 7.362056 GGACGCTGGAACAAATATATGCATATT 60.362 37.037 23.71 6.70 38.70 1.28
3106 6060 6.094048 GGACGCTGGAACAAATATATGCATAT 59.906 38.462 22.31 22.31 38.70 1.78
3107 6061 5.411361 GGACGCTGGAACAAATATATGCATA 59.589 40.000 9.27 9.27 38.70 3.14
3108 6062 4.216257 GGACGCTGGAACAAATATATGCAT 59.784 41.667 3.79 3.79 38.70 3.96
3109 6063 3.563808 GGACGCTGGAACAAATATATGCA 59.436 43.478 0.00 0.00 38.70 3.96
3110 6064 3.563808 TGGACGCTGGAACAAATATATGC 59.436 43.478 0.00 0.00 38.70 3.14
3111 6065 5.749596 TTGGACGCTGGAACAAATATATG 57.250 39.130 0.00 0.00 38.70 1.78
3112 6066 5.827797 ACATTGGACGCTGGAACAAATATAT 59.172 36.000 0.00 0.00 38.70 0.86
3113 6067 5.189928 ACATTGGACGCTGGAACAAATATA 58.810 37.500 0.00 0.00 38.70 0.86
3114 6068 4.016444 ACATTGGACGCTGGAACAAATAT 58.984 39.130 0.00 0.00 38.70 1.28
3115 6069 3.417101 ACATTGGACGCTGGAACAAATA 58.583 40.909 0.00 0.00 38.70 1.40
3116 6070 2.238521 ACATTGGACGCTGGAACAAAT 58.761 42.857 0.00 0.00 38.70 2.32
3117 6071 1.686355 ACATTGGACGCTGGAACAAA 58.314 45.000 0.00 0.00 38.70 2.83
3118 6072 2.552599 TACATTGGACGCTGGAACAA 57.447 45.000 0.00 0.00 38.70 2.83
3119 6073 2.552599 TTACATTGGACGCTGGAACA 57.447 45.000 0.00 0.00 0.00 3.18
3120 6074 3.907894 TTTTACATTGGACGCTGGAAC 57.092 42.857 0.00 0.00 0.00 3.62
3121 6075 5.650266 ACATATTTTACATTGGACGCTGGAA 59.350 36.000 0.00 0.00 0.00 3.53
3122 6076 5.189928 ACATATTTTACATTGGACGCTGGA 58.810 37.500 0.00 0.00 0.00 3.86
3123 6077 5.065859 TGACATATTTTACATTGGACGCTGG 59.934 40.000 0.00 0.00 0.00 4.85
3124 6078 6.117911 TGACATATTTTACATTGGACGCTG 57.882 37.500 0.00 0.00 0.00 5.18
3125 6079 6.751514 TTGACATATTTTACATTGGACGCT 57.248 33.333 0.00 0.00 0.00 5.07
3126 6080 6.074888 GCATTGACATATTTTACATTGGACGC 60.075 38.462 0.00 0.00 0.00 5.19
3127 6081 7.195646 AGCATTGACATATTTTACATTGGACG 58.804 34.615 0.00 0.00 0.00 4.79
3128 6082 9.450807 GTAGCATTGACATATTTTACATTGGAC 57.549 33.333 0.00 0.00 0.00 4.02
3129 6083 9.183368 TGTAGCATTGACATATTTTACATTGGA 57.817 29.630 0.00 0.00 0.00 3.53
3130 6084 9.800433 TTGTAGCATTGACATATTTTACATTGG 57.200 29.630 0.00 0.00 0.00 3.16
3156 6110 3.500680 AGACGGTCATGTTACGCATTTTT 59.499 39.130 11.27 0.00 35.19 1.94
3157 6111 3.071479 AGACGGTCATGTTACGCATTTT 58.929 40.909 11.27 0.00 35.19 1.82
3158 6112 2.695359 AGACGGTCATGTTACGCATTT 58.305 42.857 11.27 0.00 35.19 2.32
3159 6113 2.380084 AGACGGTCATGTTACGCATT 57.620 45.000 11.27 0.00 35.19 3.56
3160 6114 3.381045 CATAGACGGTCATGTTACGCAT 58.619 45.455 11.27 0.00 38.60 4.73
3161 6115 2.804647 CATAGACGGTCATGTTACGCA 58.195 47.619 11.27 0.00 0.00 5.24
3162 6116 1.521423 GCATAGACGGTCATGTTACGC 59.479 52.381 11.27 0.00 0.00 4.42
3163 6117 2.124903 GGCATAGACGGTCATGTTACG 58.875 52.381 11.27 0.00 0.00 3.18
3164 6118 2.480845 GGGCATAGACGGTCATGTTAC 58.519 52.381 11.27 7.04 0.00 2.50
3165 6119 1.067974 CGGGCATAGACGGTCATGTTA 59.932 52.381 11.27 0.00 0.00 2.41
3166 6120 0.179084 CGGGCATAGACGGTCATGTT 60.179 55.000 11.27 0.00 0.00 2.71
3167 6121 1.441729 CGGGCATAGACGGTCATGT 59.558 57.895 11.27 0.00 0.00 3.21
3168 6122 1.956170 GCGGGCATAGACGGTCATG 60.956 63.158 11.27 12.34 0.00 3.07
3169 6123 2.421739 GCGGGCATAGACGGTCAT 59.578 61.111 11.27 0.00 0.00 3.06
3170 6124 3.071837 TGCGGGCATAGACGGTCA 61.072 61.111 11.27 0.00 0.00 4.02
3171 6125 2.585247 GTGCGGGCATAGACGGTC 60.585 66.667 0.00 0.00 0.00 4.79
3172 6126 2.457743 TTTGTGCGGGCATAGACGGT 62.458 55.000 0.00 0.00 0.00 4.83
3173 6127 1.302383 TTTTGTGCGGGCATAGACGG 61.302 55.000 0.00 0.00 0.00 4.79
3174 6128 0.519519 TTTTTGTGCGGGCATAGACG 59.480 50.000 0.00 0.00 0.00 4.18
3175 6129 2.939460 ATTTTTGTGCGGGCATAGAC 57.061 45.000 0.00 0.00 0.00 2.59
3176 6130 4.013728 ACTTATTTTTGTGCGGGCATAGA 58.986 39.130 0.00 0.00 0.00 1.98
3177 6131 4.104776 CACTTATTTTTGTGCGGGCATAG 58.895 43.478 0.00 0.00 0.00 2.23
3178 6132 3.119316 CCACTTATTTTTGTGCGGGCATA 60.119 43.478 0.00 0.00 33.26 3.14
3179 6133 2.353605 CCACTTATTTTTGTGCGGGCAT 60.354 45.455 0.00 0.00 33.26 4.40
3180 6134 1.000283 CCACTTATTTTTGTGCGGGCA 60.000 47.619 0.00 0.00 33.26 5.36
3181 6135 1.271102 TCCACTTATTTTTGTGCGGGC 59.729 47.619 0.00 0.00 33.26 6.13
3182 6136 3.243569 TGTTCCACTTATTTTTGTGCGGG 60.244 43.478 0.00 0.00 33.26 6.13
3183 6137 3.971150 TGTTCCACTTATTTTTGTGCGG 58.029 40.909 0.00 0.00 33.26 5.69
3184 6138 4.854399 TCTGTTCCACTTATTTTTGTGCG 58.146 39.130 0.00 0.00 33.26 5.34
3186 6140 7.920151 TGTCAATCTGTTCCACTTATTTTTGTG 59.080 33.333 0.00 0.00 0.00 3.33
3189 6143 7.599998 GCATGTCAATCTGTTCCACTTATTTTT 59.400 33.333 0.00 0.00 0.00 1.94
3194 6148 4.650734 TGCATGTCAATCTGTTCCACTTA 58.349 39.130 0.00 0.00 0.00 2.24
3199 6153 4.913335 ATCATGCATGTCAATCTGTTCC 57.087 40.909 25.43 0.00 0.00 3.62
3203 6157 3.381045 GCCAATCATGCATGTCAATCTG 58.619 45.455 25.43 13.83 0.00 2.90
3204 6158 2.034179 CGCCAATCATGCATGTCAATCT 59.966 45.455 25.43 3.26 0.00 2.40
3206 6160 1.067974 CCGCCAATCATGCATGTCAAT 59.932 47.619 25.43 9.94 0.00 2.57
3208 6162 2.007113 GCCGCCAATCATGCATGTCA 62.007 55.000 25.43 8.61 0.00 3.58
3209 6163 1.299620 GCCGCCAATCATGCATGTC 60.300 57.895 25.43 10.23 0.00 3.06
3211 6165 1.365999 ATGCCGCCAATCATGCATG 59.634 52.632 21.07 21.07 42.48 4.06
3212 6166 1.365999 CATGCCGCCAATCATGCAT 59.634 52.632 0.00 0.00 44.79 3.96
3215 6169 0.249155 GAACCATGCCGCCAATCATG 60.249 55.000 0.00 0.00 39.67 3.07
3220 6174 2.988684 GTGGAACCATGCCGCCAA 60.989 61.111 0.00 0.00 31.18 4.52
3221 6175 3.799286 TTGTGGAACCATGCCGCCA 62.799 57.895 0.00 0.00 35.05 5.69
3222 6176 1.887344 ATTTGTGGAACCATGCCGCC 61.887 55.000 0.00 0.00 35.05 6.13
3224 6178 3.584406 TTTATTTGTGGAACCATGCCG 57.416 42.857 0.00 0.00 34.36 5.69
3226 6180 6.035975 GCACTAATTTATTTGTGGAACCATGC 59.964 38.462 15.36 0.00 41.57 4.06
3227 6181 7.095910 TGCACTAATTTATTTGTGGAACCATG 58.904 34.615 15.36 0.00 39.75 3.66
3230 6184 9.646427 TTTATGCACTAATTTATTTGTGGAACC 57.354 29.630 13.09 2.13 43.75 3.62
3246 6200 9.589111 TGATCGTAAGTTACAATTTATGCACTA 57.411 29.630 13.33 0.00 39.48 2.74
3247 6201 8.487313 TGATCGTAAGTTACAATTTATGCACT 57.513 30.769 13.33 0.00 39.48 4.40
3249 6203 8.600625 GTCTGATCGTAAGTTACAATTTATGCA 58.399 33.333 13.33 0.00 39.48 3.96
3250 6204 8.818057 AGTCTGATCGTAAGTTACAATTTATGC 58.182 33.333 13.33 0.00 39.48 3.14
3257 6211 7.599171 TCATCAAGTCTGATCGTAAGTTACAA 58.401 34.615 13.33 0.00 40.49 2.41
3258 6212 7.153217 TCATCAAGTCTGATCGTAAGTTACA 57.847 36.000 13.33 1.33 40.49 2.41
3259 6213 7.306283 GCATCATCAAGTCTGATCGTAAGTTAC 60.306 40.741 2.72 2.72 40.49 2.50
3260 6214 6.697455 GCATCATCAAGTCTGATCGTAAGTTA 59.303 38.462 0.00 0.00 40.49 2.24
3262 6216 5.046529 GCATCATCAAGTCTGATCGTAAGT 58.953 41.667 0.00 0.00 40.49 2.24
3263 6217 4.147826 CGCATCATCAAGTCTGATCGTAAG 59.852 45.833 0.00 0.00 40.49 2.34
3264 6218 4.044426 CGCATCATCAAGTCTGATCGTAA 58.956 43.478 0.00 0.00 40.49 3.18
3266 6220 2.467838 CGCATCATCAAGTCTGATCGT 58.532 47.619 0.00 0.00 40.49 3.73
3267 6221 1.791204 CCGCATCATCAAGTCTGATCG 59.209 52.381 0.00 0.00 40.49 3.69
3268 6222 1.530293 GCCGCATCATCAAGTCTGATC 59.470 52.381 0.00 0.00 40.49 2.92
3269 6223 1.134310 TGCCGCATCATCAAGTCTGAT 60.134 47.619 0.00 0.00 43.40 2.90
3270 6224 0.249955 TGCCGCATCATCAAGTCTGA 59.750 50.000 0.00 0.00 35.56 3.27
3271 6225 1.306148 ATGCCGCATCATCAAGTCTG 58.694 50.000 0.00 0.00 0.00 3.51
3272 6226 2.103771 ACTATGCCGCATCATCAAGTCT 59.896 45.455 9.71 0.00 0.00 3.24
3273 6227 2.487934 ACTATGCCGCATCATCAAGTC 58.512 47.619 9.71 0.00 0.00 3.01
3274 6228 2.627515 ACTATGCCGCATCATCAAGT 57.372 45.000 9.71 4.46 0.00 3.16
3275 6229 2.225019 GGAACTATGCCGCATCATCAAG 59.775 50.000 9.71 3.77 0.00 3.02
3276 6230 2.221169 GGAACTATGCCGCATCATCAA 58.779 47.619 9.71 0.00 0.00 2.57
3277 6231 1.140652 TGGAACTATGCCGCATCATCA 59.859 47.619 9.71 0.31 0.00 3.07
3278 6232 1.882912 TGGAACTATGCCGCATCATC 58.117 50.000 9.71 6.76 0.00 2.92
3314 6270 2.814805 AAACAGATGCAGCCCACTAT 57.185 45.000 0.00 0.00 0.00 2.12
3322 6278 8.674263 AATCCTCTATTCTTAAACAGATGCAG 57.326 34.615 0.00 0.00 0.00 4.41
3355 6311 8.907222 AATTTCTGCATTTTCCTTTGTTGTAT 57.093 26.923 0.00 0.00 0.00 2.29
3356 6312 8.729805 AAATTTCTGCATTTTCCTTTGTTGTA 57.270 26.923 0.00 0.00 0.00 2.41
3357 6313 7.628769 AAATTTCTGCATTTTCCTTTGTTGT 57.371 28.000 0.00 0.00 0.00 3.32
3358 6314 8.551122 GAAAATTTCTGCATTTTCCTTTGTTG 57.449 30.769 10.76 0.00 43.22 3.33
3366 6322 8.953368 ATCCATAGGAAAATTTCTGCATTTTC 57.047 30.769 12.71 12.71 46.17 2.29
3371 6331 5.422970 AGCAATCCATAGGAAAATTTCTGCA 59.577 36.000 12.52 0.00 34.34 4.41
3433 6394 5.835280 ACTGGGTCATCTGAAACAAAGAAAT 59.165 36.000 0.00 0.00 0.00 2.17
3459 6441 9.866655 ATTGCAGTATTCCTATAGAAAAATCCA 57.133 29.630 0.00 0.00 38.21 3.41
3568 6748 7.391833 CCTAATCCTATTAGGCAATGGACTTTC 59.608 40.741 11.70 0.00 35.60 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.