Multiple sequence alignment - TraesCS4D01G213100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G213100 chr4D 100.000 2474 0 0 1 2474 365865993 365863520 0.000000e+00 4569.0
1 TraesCS4D01G213100 chr4D 92.173 971 39 20 698 1633 366219939 366218971 0.000000e+00 1338.0
2 TraesCS4D01G213100 chr4D 90.406 813 54 14 679 1478 365217228 365218029 0.000000e+00 1048.0
3 TraesCS4D01G213100 chr4D 90.598 117 11 0 278 394 324235219 324235103 3.290000e-34 156.0
4 TraesCS4D01G213100 chr4B 92.569 1090 56 9 678 1750 450483573 450482492 0.000000e+00 1541.0
5 TraesCS4D01G213100 chr4B 91.142 937 45 17 660 1569 450686698 450685773 0.000000e+00 1236.0
6 TraesCS4D01G213100 chr4B 88.589 964 75 23 684 1625 450105403 450106353 0.000000e+00 1138.0
7 TraesCS4D01G213100 chr4B 92.017 714 24 8 1764 2474 450482252 450481569 0.000000e+00 972.0
8 TraesCS4D01G213100 chr4B 82.547 212 28 7 65 271 450495637 450495430 7.030000e-41 178.0
9 TraesCS4D01G213100 chr4B 88.430 121 14 0 275 395 254413246 254413366 1.980000e-31 147.0
10 TraesCS4D01G213100 chr4A 94.145 871 27 7 899 1750 99004934 99005799 0.000000e+00 1304.0
11 TraesCS4D01G213100 chr4A 95.518 714 29 2 1762 2474 99005908 99006619 0.000000e+00 1138.0
12 TraesCS4D01G213100 chr4A 89.034 921 58 22 683 1569 98785195 98786106 0.000000e+00 1101.0
13 TraesCS4D01G213100 chr4A 90.985 477 40 2 1001 1474 100551358 100550882 7.460000e-180 640.0
14 TraesCS4D01G213100 chr4A 88.889 477 50 2 1001 1474 100187764 100188240 3.550000e-163 584.0
15 TraesCS4D01G213100 chr4A 84.983 293 30 4 1 285 98801196 98801482 4.030000e-73 285.0
16 TraesCS4D01G213100 chr4A 85.714 84 9 3 203 285 98786857 98786938 4.380000e-13 86.1
17 TraesCS4D01G213100 chr4A 100.000 29 0 0 520 548 98801492 98801520 1.000000e-03 54.7
18 TraesCS4D01G213100 chr7B 90.756 119 11 0 277 395 697608886 697609004 2.550000e-35 159.0
19 TraesCS4D01G213100 chr7B 87.903 124 14 1 278 401 436210790 436210912 7.130000e-31 145.0
20 TraesCS4D01G213100 chr3B 90.678 118 11 0 277 394 740547584 740547467 9.160000e-35 158.0
21 TraesCS4D01G213100 chr7D 89.256 121 13 0 278 398 182605466 182605346 4.260000e-33 152.0
22 TraesCS4D01G213100 chr7D 87.903 124 15 0 272 395 176125152 176125275 1.980000e-31 147.0
23 TraesCS4D01G213100 chr7D 88.571 70 4 4 401 470 598492633 598492568 5.670000e-12 82.4
24 TraesCS4D01G213100 chr5B 88.618 123 14 0 277 399 498794051 498793929 1.530000e-32 150.0
25 TraesCS4D01G213100 chr5B 85.714 70 6 3 401 470 563347192 563347127 1.230000e-08 71.3
26 TraesCS4D01G213100 chr2D 88.983 118 13 0 278 395 122863401 122863518 1.980000e-31 147.0
27 TraesCS4D01G213100 chr2D 85.714 70 6 4 404 473 318350624 318350559 1.230000e-08 71.3
28 TraesCS4D01G213100 chr6A 83.810 105 12 3 519 618 181560702 181560806 7.280000e-16 95.3
29 TraesCS4D01G213100 chr5D 82.979 94 14 1 524 615 496552829 496552736 1.580000e-12 84.2
30 TraesCS4D01G213100 chr5D 87.143 70 5 4 401 470 439209650 439209715 2.640000e-10 76.8
31 TraesCS4D01G213100 chr5D 83.607 61 10 0 1689 1749 460449122 460449182 9.560000e-05 58.4
32 TraesCS4D01G213100 chr5A 81.188 101 15 2 519 615 620406410 620406310 7.340000e-11 78.7
33 TraesCS4D01G213100 chr1A 81.818 99 12 2 519 611 56626553 56626455 7.340000e-11 78.7
34 TraesCS4D01G213100 chr7A 89.831 59 3 3 412 470 77168156 77168211 3.410000e-09 73.1
35 TraesCS4D01G213100 chr7A 83.544 79 9 3 392 470 534333530 534333604 1.230000e-08 71.3
36 TraesCS4D01G213100 chr3D 84.932 73 7 4 401 473 170186612 170186544 1.230000e-08 71.3
37 TraesCS4D01G213100 chr3D 94.872 39 1 1 523 561 12422749 12422786 2.660000e-05 60.2
38 TraesCS4D01G213100 chr1D 80.851 94 10 2 519 605 57505393 57505301 1.590000e-07 67.6
39 TraesCS4D01G213100 chr1D 84.615 65 3 6 411 470 10379355 10379293 9.560000e-05 58.4
40 TraesCS4D01G213100 chr2B 85.484 62 6 2 392 452 695578958 695579017 7.390000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G213100 chr4D 365863520 365865993 2473 True 4569.00 4569 100.0000 1 2474 1 chr4D.!!$R2 2473
1 TraesCS4D01G213100 chr4D 366218971 366219939 968 True 1338.00 1338 92.1730 698 1633 1 chr4D.!!$R3 935
2 TraesCS4D01G213100 chr4D 365217228 365218029 801 False 1048.00 1048 90.4060 679 1478 1 chr4D.!!$F1 799
3 TraesCS4D01G213100 chr4B 450481569 450483573 2004 True 1256.50 1541 92.2930 678 2474 2 chr4B.!!$R3 1796
4 TraesCS4D01G213100 chr4B 450685773 450686698 925 True 1236.00 1236 91.1420 660 1569 1 chr4B.!!$R2 909
5 TraesCS4D01G213100 chr4B 450105403 450106353 950 False 1138.00 1138 88.5890 684 1625 1 chr4B.!!$F2 941
6 TraesCS4D01G213100 chr4A 99004934 99006619 1685 False 1221.00 1304 94.8315 899 2474 2 chr4A.!!$F4 1575
7 TraesCS4D01G213100 chr4A 98785195 98786938 1743 False 593.55 1101 87.3740 203 1569 2 chr4A.!!$F2 1366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 695 0.027324 GCGCAAATCTACTGCAGAGC 59.973 55.0 23.35 10.82 39.91 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1834 2.128035 CAAGACACCGTTGTGAGAGTC 58.872 52.381 0.0 0.0 45.76 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.906157 ATCCATGCAAAAAGAAAAGAGAGA 57.094 33.333 0.00 0.00 0.00 3.10
46 47 6.713762 TCCATGCAAAAAGAAAAGAGAGAA 57.286 33.333 0.00 0.00 0.00 2.87
47 48 7.111247 TCCATGCAAAAAGAAAAGAGAGAAA 57.889 32.000 0.00 0.00 0.00 2.52
48 49 7.729116 TCCATGCAAAAAGAAAAGAGAGAAAT 58.271 30.769 0.00 0.00 0.00 2.17
49 50 8.206189 TCCATGCAAAAAGAAAAGAGAGAAATT 58.794 29.630 0.00 0.00 0.00 1.82
50 51 8.280497 CCATGCAAAAAGAAAAGAGAGAAATTG 58.720 33.333 0.00 0.00 0.00 2.32
51 52 8.823818 CATGCAAAAAGAAAAGAGAGAAATTGT 58.176 29.630 0.00 0.00 0.00 2.71
53 54 9.868277 TGCAAAAAGAAAAGAGAGAAATTGTAA 57.132 25.926 0.00 0.00 0.00 2.41
75 76 9.817809 TGTAATAAGTAAGCTAGTTGAGAATGG 57.182 33.333 0.00 0.00 0.00 3.16
76 77 7.793927 AATAAGTAAGCTAGTTGAGAATGGC 57.206 36.000 0.00 0.00 0.00 4.40
77 78 5.428184 AAGTAAGCTAGTTGAGAATGGCT 57.572 39.130 0.00 0.00 0.00 4.75
78 79 6.546428 AAGTAAGCTAGTTGAGAATGGCTA 57.454 37.500 0.00 0.00 0.00 3.93
79 80 6.739331 AGTAAGCTAGTTGAGAATGGCTAT 57.261 37.500 0.00 0.00 0.00 2.97
80 81 6.520272 AGTAAGCTAGTTGAGAATGGCTATG 58.480 40.000 0.00 0.00 0.00 2.23
81 82 4.348863 AGCTAGTTGAGAATGGCTATGG 57.651 45.455 0.00 0.00 0.00 2.74
82 83 3.969976 AGCTAGTTGAGAATGGCTATGGA 59.030 43.478 0.00 0.00 0.00 3.41
83 84 4.040217 AGCTAGTTGAGAATGGCTATGGAG 59.960 45.833 0.00 0.00 0.00 3.86
92 93 4.014065 GCTATGGAGCGGACGTTC 57.986 61.111 0.00 0.00 39.39 3.95
93 94 1.141019 GCTATGGAGCGGACGTTCA 59.859 57.895 10.54 0.00 39.39 3.18
94 95 0.249489 GCTATGGAGCGGACGTTCAT 60.249 55.000 10.54 6.41 39.39 2.57
95 96 1.806623 GCTATGGAGCGGACGTTCATT 60.807 52.381 10.54 0.26 39.39 2.57
96 97 1.860950 CTATGGAGCGGACGTTCATTG 59.139 52.381 10.54 2.26 0.00 2.82
97 98 0.249120 ATGGAGCGGACGTTCATTGA 59.751 50.000 10.54 0.00 0.00 2.57
98 99 0.249120 TGGAGCGGACGTTCATTGAT 59.751 50.000 10.54 0.00 0.00 2.57
99 100 1.338674 TGGAGCGGACGTTCATTGATT 60.339 47.619 10.54 0.00 0.00 2.57
100 101 1.062587 GGAGCGGACGTTCATTGATTG 59.937 52.381 10.54 0.00 0.00 2.67
101 102 1.732259 GAGCGGACGTTCATTGATTGT 59.268 47.619 3.68 0.00 0.00 2.71
102 103 1.464608 AGCGGACGTTCATTGATTGTG 59.535 47.619 0.00 0.00 0.00 3.33
103 104 1.465689 GCGGACGTTCATTGATTGTGG 60.466 52.381 0.00 0.00 0.00 4.17
104 105 1.465689 CGGACGTTCATTGATTGTGGC 60.466 52.381 0.00 0.00 0.00 5.01
105 106 1.539388 GGACGTTCATTGATTGTGGCA 59.461 47.619 0.00 0.00 0.00 4.92
106 107 2.164219 GGACGTTCATTGATTGTGGCAT 59.836 45.455 0.00 0.00 0.00 4.40
107 108 3.173599 GACGTTCATTGATTGTGGCATG 58.826 45.455 0.00 0.00 0.00 4.06
108 109 2.819019 ACGTTCATTGATTGTGGCATGA 59.181 40.909 0.00 0.00 0.00 3.07
109 110 3.255395 ACGTTCATTGATTGTGGCATGAA 59.745 39.130 0.00 0.00 0.00 2.57
110 111 4.082081 ACGTTCATTGATTGTGGCATGAAT 60.082 37.500 0.00 0.00 31.83 2.57
111 112 5.125257 ACGTTCATTGATTGTGGCATGAATA 59.875 36.000 0.00 0.00 31.83 1.75
112 113 6.183360 ACGTTCATTGATTGTGGCATGAATAT 60.183 34.615 0.00 0.00 31.83 1.28
113 114 7.013178 ACGTTCATTGATTGTGGCATGAATATA 59.987 33.333 0.00 0.00 31.83 0.86
114 115 7.861872 CGTTCATTGATTGTGGCATGAATATAA 59.138 33.333 0.00 0.00 31.83 0.98
115 116 9.701098 GTTCATTGATTGTGGCATGAATATAAT 57.299 29.630 0.00 0.00 31.83 1.28
116 117 9.917129 TTCATTGATTGTGGCATGAATATAATC 57.083 29.630 0.00 2.20 0.00 1.75
117 118 8.525316 TCATTGATTGTGGCATGAATATAATCC 58.475 33.333 0.00 0.00 0.00 3.01
118 119 8.528643 CATTGATTGTGGCATGAATATAATCCT 58.471 33.333 0.00 0.00 0.00 3.24
119 120 7.457024 TGATTGTGGCATGAATATAATCCTG 57.543 36.000 0.00 0.00 0.00 3.86
120 121 7.232910 TGATTGTGGCATGAATATAATCCTGA 58.767 34.615 0.00 0.00 0.00 3.86
121 122 6.882610 TTGTGGCATGAATATAATCCTGAC 57.117 37.500 0.00 0.00 0.00 3.51
122 123 6.191657 TGTGGCATGAATATAATCCTGACT 57.808 37.500 0.00 0.00 0.00 3.41
123 124 6.604171 TGTGGCATGAATATAATCCTGACTT 58.396 36.000 0.00 0.00 0.00 3.01
124 125 7.062322 TGTGGCATGAATATAATCCTGACTTT 58.938 34.615 0.00 0.00 0.00 2.66
125 126 7.013559 TGTGGCATGAATATAATCCTGACTTTG 59.986 37.037 0.00 0.00 0.00 2.77
126 127 7.013655 GTGGCATGAATATAATCCTGACTTTGT 59.986 37.037 0.00 0.00 0.00 2.83
127 128 7.560991 TGGCATGAATATAATCCTGACTTTGTT 59.439 33.333 0.00 0.00 0.00 2.83
128 129 8.416329 GGCATGAATATAATCCTGACTTTGTTT 58.584 33.333 0.00 0.00 0.00 2.83
129 130 9.807649 GCATGAATATAATCCTGACTTTGTTTT 57.192 29.630 0.00 0.00 0.00 2.43
148 149 3.907894 TTTTGGTTGGTCAATAGCGAC 57.092 42.857 0.00 0.00 36.87 5.19
149 150 2.851263 TTGGTTGGTCAATAGCGACT 57.149 45.000 0.00 0.00 37.60 4.18
150 151 2.093306 TGGTTGGTCAATAGCGACTG 57.907 50.000 0.00 0.00 37.60 3.51
151 152 1.621317 TGGTTGGTCAATAGCGACTGA 59.379 47.619 0.00 0.00 37.60 3.41
152 153 2.271800 GGTTGGTCAATAGCGACTGAG 58.728 52.381 0.00 0.00 37.60 3.35
153 154 1.661112 GTTGGTCAATAGCGACTGAGC 59.339 52.381 0.31 0.31 39.86 4.26
161 162 4.719997 GCGACTGAGCTAAGCGAT 57.280 55.556 16.24 0.00 0.00 4.58
162 163 3.847621 GCGACTGAGCTAAGCGATA 57.152 52.632 16.24 0.00 0.00 2.92
163 164 2.339728 GCGACTGAGCTAAGCGATAT 57.660 50.000 16.24 0.00 0.00 1.63
164 165 2.667137 GCGACTGAGCTAAGCGATATT 58.333 47.619 16.24 0.00 0.00 1.28
165 166 3.822996 GCGACTGAGCTAAGCGATATTA 58.177 45.455 16.24 0.00 0.00 0.98
166 167 4.227538 GCGACTGAGCTAAGCGATATTAA 58.772 43.478 16.24 0.00 0.00 1.40
167 168 4.322274 GCGACTGAGCTAAGCGATATTAAG 59.678 45.833 16.24 0.00 0.00 1.85
168 169 5.453648 CGACTGAGCTAAGCGATATTAAGT 58.546 41.667 8.70 0.00 0.00 2.24
169 170 6.600350 CGACTGAGCTAAGCGATATTAAGTA 58.400 40.000 8.70 0.00 0.00 2.24
170 171 7.076362 CGACTGAGCTAAGCGATATTAAGTAA 58.924 38.462 8.70 0.00 0.00 2.24
171 172 7.751348 CGACTGAGCTAAGCGATATTAAGTAAT 59.249 37.037 8.70 0.00 0.00 1.89
172 173 8.749841 ACTGAGCTAAGCGATATTAAGTAATG 57.250 34.615 0.00 0.00 0.00 1.90
173 174 7.815068 ACTGAGCTAAGCGATATTAAGTAATGG 59.185 37.037 0.00 0.00 0.00 3.16
174 175 7.892609 TGAGCTAAGCGATATTAAGTAATGGA 58.107 34.615 0.00 0.00 0.00 3.41
175 176 8.364894 TGAGCTAAGCGATATTAAGTAATGGAA 58.635 33.333 0.00 0.00 0.00 3.53
176 177 9.372369 GAGCTAAGCGATATTAAGTAATGGAAT 57.628 33.333 0.00 0.00 0.00 3.01
177 178 9.155975 AGCTAAGCGATATTAAGTAATGGAATG 57.844 33.333 0.00 0.00 0.00 2.67
178 179 8.936864 GCTAAGCGATATTAAGTAATGGAATGT 58.063 33.333 0.00 0.00 0.00 2.71
189 190 7.480760 AAGTAATGGAATGTAATTTGCAGGT 57.519 32.000 0.00 0.00 36.07 4.00
190 191 8.588290 AAGTAATGGAATGTAATTTGCAGGTA 57.412 30.769 0.00 0.00 36.07 3.08
191 192 8.588290 AGTAATGGAATGTAATTTGCAGGTAA 57.412 30.769 0.00 0.00 36.07 2.85
192 193 9.030452 AGTAATGGAATGTAATTTGCAGGTAAA 57.970 29.630 0.00 0.00 36.07 2.01
193 194 9.646427 GTAATGGAATGTAATTTGCAGGTAAAA 57.354 29.630 0.00 0.00 36.07 1.52
195 196 9.737844 AATGGAATGTAATTTGCAGGTAAAAAT 57.262 25.926 0.00 0.00 36.07 1.82
225 226 8.871629 ACCCAAAATGTGTATGTTATACAAGA 57.128 30.769 3.44 0.00 33.48 3.02
226 227 9.474313 ACCCAAAATGTGTATGTTATACAAGAT 57.526 29.630 3.44 0.00 33.48 2.40
291 292 6.912951 TTTTCTTCCTACTCCCTATATCCG 57.087 41.667 0.00 0.00 0.00 4.18
292 293 4.587976 TCTTCCTACTCCCTATATCCGG 57.412 50.000 0.00 0.00 0.00 5.14
293 294 4.181520 TCTTCCTACTCCCTATATCCGGA 58.818 47.826 6.61 6.61 0.00 5.14
294 295 4.604930 TCTTCCTACTCCCTATATCCGGAA 59.395 45.833 9.01 0.00 0.00 4.30
295 296 5.075483 TCTTCCTACTCCCTATATCCGGAAA 59.925 44.000 9.01 0.00 0.00 3.13
296 297 5.547631 TCCTACTCCCTATATCCGGAAAT 57.452 43.478 9.01 0.00 0.00 2.17
297 298 6.663336 TCCTACTCCCTATATCCGGAAATA 57.337 41.667 9.01 0.00 0.00 1.40
298 299 6.430007 TCCTACTCCCTATATCCGGAAATAC 58.570 44.000 9.01 0.00 0.00 1.89
299 300 6.219146 TCCTACTCCCTATATCCGGAAATACT 59.781 42.308 9.01 0.00 0.00 2.12
300 301 6.896307 CCTACTCCCTATATCCGGAAATACTT 59.104 42.308 9.01 0.00 0.00 2.24
301 302 6.607004 ACTCCCTATATCCGGAAATACTTG 57.393 41.667 9.01 0.00 0.00 3.16
302 303 6.082707 ACTCCCTATATCCGGAAATACTTGT 58.917 40.000 9.01 0.00 0.00 3.16
303 304 6.210984 ACTCCCTATATCCGGAAATACTTGTC 59.789 42.308 9.01 0.00 0.00 3.18
304 305 5.184479 TCCCTATATCCGGAAATACTTGTCG 59.816 44.000 9.01 0.00 0.00 4.35
305 306 5.184479 CCCTATATCCGGAAATACTTGTCGA 59.816 44.000 9.01 0.00 0.00 4.20
306 307 6.294899 CCCTATATCCGGAAATACTTGTCGAA 60.295 42.308 9.01 0.00 0.00 3.71
307 308 7.149973 CCTATATCCGGAAATACTTGTCGAAA 58.850 38.462 9.01 0.00 0.00 3.46
308 309 7.654520 CCTATATCCGGAAATACTTGTCGAAAA 59.345 37.037 9.01 0.00 0.00 2.29
309 310 7.852971 ATATCCGGAAATACTTGTCGAAAAA 57.147 32.000 9.01 0.00 0.00 1.94
337 338 9.832445 TGGATGTTTCTAGACATAATTTAGTCC 57.168 33.333 0.00 0.00 40.21 3.85
358 359 8.196378 AGTCCTAGATACATCCATTTCTAACC 57.804 38.462 0.00 0.00 0.00 2.85
359 360 7.789831 AGTCCTAGATACATCCATTTCTAACCA 59.210 37.037 0.00 0.00 0.00 3.67
360 361 8.598041 GTCCTAGATACATCCATTTCTAACCAT 58.402 37.037 0.00 0.00 0.00 3.55
361 362 9.170890 TCCTAGATACATCCATTTCTAACCATT 57.829 33.333 0.00 0.00 0.00 3.16
362 363 9.799106 CCTAGATACATCCATTTCTAACCATTT 57.201 33.333 0.00 0.00 0.00 2.32
365 366 8.840321 AGATACATCCATTTCTAACCATTTTCG 58.160 33.333 0.00 0.00 0.00 3.46
366 367 5.650543 ACATCCATTTCTAACCATTTTCGC 58.349 37.500 0.00 0.00 0.00 4.70
367 368 4.349663 TCCATTTCTAACCATTTTCGCG 57.650 40.909 0.00 0.00 0.00 5.87
368 369 4.004314 TCCATTTCTAACCATTTTCGCGA 58.996 39.130 3.71 3.71 0.00 5.87
369 370 4.095610 CCATTTCTAACCATTTTCGCGAC 58.904 43.478 9.15 0.00 0.00 5.19
370 371 4.378978 CCATTTCTAACCATTTTCGCGACA 60.379 41.667 9.15 0.00 0.00 4.35
371 372 4.815040 TTTCTAACCATTTTCGCGACAA 57.185 36.364 9.15 9.93 0.00 3.18
372 373 4.398549 TTCTAACCATTTTCGCGACAAG 57.601 40.909 9.15 0.00 0.00 3.16
373 374 3.395639 TCTAACCATTTTCGCGACAAGT 58.604 40.909 9.15 0.37 0.00 3.16
374 375 4.558178 TCTAACCATTTTCGCGACAAGTA 58.442 39.130 9.15 0.00 0.00 2.24
375 376 4.989797 TCTAACCATTTTCGCGACAAGTAA 59.010 37.500 9.15 0.00 0.00 2.24
376 377 4.759516 AACCATTTTCGCGACAAGTAAT 57.240 36.364 9.15 0.88 0.00 1.89
377 378 4.759516 ACCATTTTCGCGACAAGTAATT 57.240 36.364 9.15 0.00 0.00 1.40
378 379 4.719040 ACCATTTTCGCGACAAGTAATTC 58.281 39.130 9.15 0.00 0.00 2.17
379 380 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
380 381 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
381 382 1.352114 TTCGCGACAAGTAATTCCGG 58.648 50.000 9.15 0.00 0.00 5.14
382 383 0.527113 TCGCGACAAGTAATTCCGGA 59.473 50.000 3.71 0.00 0.00 5.14
383 384 0.643820 CGCGACAAGTAATTCCGGAC 59.356 55.000 1.83 0.00 0.00 4.79
384 385 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
385 386 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
386 387 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
387 388 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
388 389 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
389 390 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
390 391 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
391 392 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
392 393 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
393 394 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
394 395 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
395 396 2.832201 CCGGACGGAGGGAGTACC 60.832 72.222 4.40 0.00 37.50 3.34
396 397 2.044650 CGGACGGAGGGAGTACCA 60.045 66.667 0.00 0.00 43.89 3.25
397 398 1.455217 CGGACGGAGGGAGTACCAT 60.455 63.158 0.00 0.00 43.89 3.55
398 399 1.735376 CGGACGGAGGGAGTACCATG 61.735 65.000 0.00 0.00 43.89 3.66
399 400 0.686769 GGACGGAGGGAGTACCATGT 60.687 60.000 0.00 0.00 43.89 3.21
400 401 1.192428 GACGGAGGGAGTACCATGTT 58.808 55.000 0.00 0.00 43.89 2.71
401 402 2.381911 GACGGAGGGAGTACCATGTTA 58.618 52.381 0.00 0.00 43.89 2.41
402 403 2.963782 GACGGAGGGAGTACCATGTTAT 59.036 50.000 0.00 0.00 43.89 1.89
403 404 4.147321 GACGGAGGGAGTACCATGTTATA 58.853 47.826 0.00 0.00 43.89 0.98
404 405 4.549668 ACGGAGGGAGTACCATGTTATAA 58.450 43.478 0.00 0.00 43.89 0.98
405 406 4.587684 ACGGAGGGAGTACCATGTTATAAG 59.412 45.833 0.00 0.00 43.89 1.73
406 407 4.831155 CGGAGGGAGTACCATGTTATAAGA 59.169 45.833 0.00 0.00 43.89 2.10
407 408 5.047943 CGGAGGGAGTACCATGTTATAAGAG 60.048 48.000 0.00 0.00 43.89 2.85
408 409 5.279556 GGAGGGAGTACCATGTTATAAGAGC 60.280 48.000 0.00 0.00 43.89 4.09
409 410 5.216622 AGGGAGTACCATGTTATAAGAGCA 58.783 41.667 0.00 0.00 43.89 4.26
410 411 5.846714 AGGGAGTACCATGTTATAAGAGCAT 59.153 40.000 0.00 0.00 43.89 3.79
411 412 6.330250 AGGGAGTACCATGTTATAAGAGCATT 59.670 38.462 0.00 0.00 43.89 3.56
412 413 6.998673 GGGAGTACCATGTTATAAGAGCATTT 59.001 38.462 0.00 0.00 39.85 2.32
413 414 7.502561 GGGAGTACCATGTTATAAGAGCATTTT 59.497 37.037 0.00 0.00 39.85 1.82
414 415 8.903820 GGAGTACCATGTTATAAGAGCATTTTT 58.096 33.333 0.00 0.00 35.97 1.94
468 469 9.543231 TTTATATTATTATGAGACGGAGGGAGT 57.457 33.333 0.00 0.00 0.00 3.85
471 472 9.716556 ATATTATTATGAGACGGAGGGAGTAAT 57.283 33.333 0.00 0.00 0.00 1.89
472 473 7.850935 TTATTATGAGACGGAGGGAGTAATT 57.149 36.000 0.00 0.00 0.00 1.40
473 474 5.786264 TTATGAGACGGAGGGAGTAATTC 57.214 43.478 0.00 0.00 0.00 2.17
474 475 3.383698 TGAGACGGAGGGAGTAATTCT 57.616 47.619 0.00 0.00 0.00 2.40
475 476 3.288964 TGAGACGGAGGGAGTAATTCTC 58.711 50.000 0.00 0.00 42.07 2.87
476 477 3.288964 GAGACGGAGGGAGTAATTCTCA 58.711 50.000 7.07 0.00 44.40 3.27
477 478 3.892588 GAGACGGAGGGAGTAATTCTCAT 59.107 47.826 7.07 0.00 44.40 2.90
478 479 3.892588 AGACGGAGGGAGTAATTCTCATC 59.107 47.826 7.07 4.91 44.40 2.92
479 480 3.892588 GACGGAGGGAGTAATTCTCATCT 59.107 47.826 7.07 4.50 44.40 2.90
480 481 5.063017 ACGGAGGGAGTAATTCTCATCTA 57.937 43.478 7.07 0.00 44.40 1.98
481 482 5.646215 ACGGAGGGAGTAATTCTCATCTAT 58.354 41.667 7.07 0.00 44.40 1.98
482 483 6.078664 ACGGAGGGAGTAATTCTCATCTATT 58.921 40.000 7.07 0.00 44.40 1.73
483 484 6.555360 ACGGAGGGAGTAATTCTCATCTATTT 59.445 38.462 7.07 0.00 44.40 1.40
484 485 7.071321 ACGGAGGGAGTAATTCTCATCTATTTT 59.929 37.037 7.07 0.00 44.40 1.82
485 486 7.600752 CGGAGGGAGTAATTCTCATCTATTTTC 59.399 40.741 7.07 0.00 44.40 2.29
486 487 8.655901 GGAGGGAGTAATTCTCATCTATTTTCT 58.344 37.037 7.07 0.00 44.40 2.52
487 488 9.705290 GAGGGAGTAATTCTCATCTATTTTCTC 57.295 37.037 7.07 0.00 44.40 2.87
488 489 8.655901 AGGGAGTAATTCTCATCTATTTTCTCC 58.344 37.037 0.00 0.00 44.40 3.71
489 490 7.600752 GGGAGTAATTCTCATCTATTTTCTCCG 59.399 40.741 0.00 0.00 44.40 4.63
490 491 8.145122 GGAGTAATTCTCATCTATTTTCTCCGT 58.855 37.037 0.00 0.00 44.40 4.69
491 492 9.187455 GAGTAATTCTCATCTATTTTCTCCGTC 57.813 37.037 0.00 0.00 42.34 4.79
492 493 8.919145 AGTAATTCTCATCTATTTTCTCCGTCT 58.081 33.333 0.00 0.00 0.00 4.18
493 494 9.187455 GTAATTCTCATCTATTTTCTCCGTCTC 57.813 37.037 0.00 0.00 0.00 3.36
494 495 6.775594 TTCTCATCTATTTTCTCCGTCTCA 57.224 37.500 0.00 0.00 0.00 3.27
495 496 6.968263 TCTCATCTATTTTCTCCGTCTCAT 57.032 37.500 0.00 0.00 0.00 2.90
496 497 8.465273 TTCTCATCTATTTTCTCCGTCTCATA 57.535 34.615 0.00 0.00 0.00 2.15
497 498 8.465273 TCTCATCTATTTTCTCCGTCTCATAA 57.535 34.615 0.00 0.00 0.00 1.90
498 499 9.083422 TCTCATCTATTTTCTCCGTCTCATAAT 57.917 33.333 0.00 0.00 0.00 1.28
528 529 9.987272 AAATTTTTCTGCAAGCTAATAAAGTCT 57.013 25.926 0.00 0.00 0.00 3.24
529 530 9.631452 AATTTTTCTGCAAGCTAATAAAGTCTC 57.369 29.630 0.00 0.00 0.00 3.36
530 531 7.744087 TTTTCTGCAAGCTAATAAAGTCTCA 57.256 32.000 0.00 0.00 0.00 3.27
531 532 7.928307 TTTCTGCAAGCTAATAAAGTCTCAT 57.072 32.000 0.00 0.00 0.00 2.90
532 533 7.545362 TTCTGCAAGCTAATAAAGTCTCATC 57.455 36.000 0.00 0.00 0.00 2.92
533 534 6.882656 TCTGCAAGCTAATAAAGTCTCATCT 58.117 36.000 0.00 0.00 0.00 2.90
534 535 8.011844 TCTGCAAGCTAATAAAGTCTCATCTA 57.988 34.615 0.00 0.00 0.00 1.98
535 536 8.478066 TCTGCAAGCTAATAAAGTCTCATCTAA 58.522 33.333 0.00 0.00 0.00 2.10
536 537 8.425577 TGCAAGCTAATAAAGTCTCATCTAAC 57.574 34.615 0.00 0.00 0.00 2.34
537 538 8.260818 TGCAAGCTAATAAAGTCTCATCTAACT 58.739 33.333 0.00 0.00 0.00 2.24
538 539 8.760569 GCAAGCTAATAAAGTCTCATCTAACTC 58.239 37.037 0.00 0.00 0.00 3.01
539 540 9.255304 CAAGCTAATAAAGTCTCATCTAACTCC 57.745 37.037 0.00 0.00 0.00 3.85
540 541 8.776061 AGCTAATAAAGTCTCATCTAACTCCT 57.224 34.615 0.00 0.00 0.00 3.69
541 542 9.869667 AGCTAATAAAGTCTCATCTAACTCCTA 57.130 33.333 0.00 0.00 0.00 2.94
542 543 9.902196 GCTAATAAAGTCTCATCTAACTCCTAC 57.098 37.037 0.00 0.00 0.00 3.18
545 546 9.482175 AATAAAGTCTCATCTAACTCCTACACT 57.518 33.333 0.00 0.00 0.00 3.55
547 548 7.868906 AAGTCTCATCTAACTCCTACACTAC 57.131 40.000 0.00 0.00 0.00 2.73
548 549 7.202972 AGTCTCATCTAACTCCTACACTACT 57.797 40.000 0.00 0.00 0.00 2.57
549 550 7.635648 AGTCTCATCTAACTCCTACACTACTT 58.364 38.462 0.00 0.00 0.00 2.24
550 551 7.554835 AGTCTCATCTAACTCCTACACTACTTG 59.445 40.741 0.00 0.00 0.00 3.16
551 552 7.553402 GTCTCATCTAACTCCTACACTACTTGA 59.447 40.741 0.00 0.00 0.00 3.02
552 553 8.275758 TCTCATCTAACTCCTACACTACTTGAT 58.724 37.037 0.00 0.00 0.00 2.57
553 554 8.824756 TCATCTAACTCCTACACTACTTGATT 57.175 34.615 0.00 0.00 0.00 2.57
554 555 9.916360 TCATCTAACTCCTACACTACTTGATTA 57.084 33.333 0.00 0.00 0.00 1.75
557 558 8.964772 TCTAACTCCTACACTACTTGATTAACC 58.035 37.037 0.00 0.00 0.00 2.85
558 559 7.549147 AACTCCTACACTACTTGATTAACCA 57.451 36.000 0.00 0.00 0.00 3.67
559 560 7.549147 ACTCCTACACTACTTGATTAACCAA 57.451 36.000 0.00 0.00 0.00 3.67
560 561 7.970102 ACTCCTACACTACTTGATTAACCAAA 58.030 34.615 0.00 0.00 0.00 3.28
561 562 8.434392 ACTCCTACACTACTTGATTAACCAAAA 58.566 33.333 0.00 0.00 0.00 2.44
562 563 9.280174 CTCCTACACTACTTGATTAACCAAAAA 57.720 33.333 0.00 0.00 0.00 1.94
584 585 6.894339 AAAATTCCCTACAAATCTTCGTGT 57.106 33.333 0.00 0.00 0.00 4.49
585 586 7.989416 AAAATTCCCTACAAATCTTCGTGTA 57.011 32.000 0.00 0.00 0.00 2.90
586 587 7.989416 AAATTCCCTACAAATCTTCGTGTAA 57.011 32.000 0.00 0.00 30.11 2.41
587 588 7.989416 AATTCCCTACAAATCTTCGTGTAAA 57.011 32.000 0.00 0.00 30.11 2.01
588 589 7.989416 ATTCCCTACAAATCTTCGTGTAAAA 57.011 32.000 0.00 0.00 30.11 1.52
589 590 7.989416 TTCCCTACAAATCTTCGTGTAAAAT 57.011 32.000 0.00 0.00 30.11 1.82
590 591 7.605410 TCCCTACAAATCTTCGTGTAAAATC 57.395 36.000 0.00 0.00 30.11 2.17
591 592 6.596497 TCCCTACAAATCTTCGTGTAAAATCC 59.404 38.462 0.00 0.00 30.11 3.01
592 593 6.373216 CCCTACAAATCTTCGTGTAAAATCCA 59.627 38.462 0.00 0.00 30.11 3.41
593 594 7.094549 CCCTACAAATCTTCGTGTAAAATCCAA 60.095 37.037 0.00 0.00 30.11 3.53
594 595 7.749126 CCTACAAATCTTCGTGTAAAATCCAAC 59.251 37.037 0.00 0.00 30.11 3.77
595 596 6.140110 ACAAATCTTCGTGTAAAATCCAACG 58.860 36.000 0.00 0.00 37.38 4.10
596 597 4.939509 ATCTTCGTGTAAAATCCAACGG 57.060 40.909 0.00 0.00 36.70 4.44
597 598 3.731089 TCTTCGTGTAAAATCCAACGGT 58.269 40.909 0.00 0.00 36.70 4.83
598 599 3.495377 TCTTCGTGTAAAATCCAACGGTG 59.505 43.478 0.00 0.00 36.70 4.94
599 600 2.836262 TCGTGTAAAATCCAACGGTGT 58.164 42.857 0.00 0.00 36.70 4.16
600 601 3.987547 TCGTGTAAAATCCAACGGTGTA 58.012 40.909 0.00 0.00 36.70 2.90
601 602 4.567971 TCGTGTAAAATCCAACGGTGTAT 58.432 39.130 0.00 0.00 36.70 2.29
602 603 4.389382 TCGTGTAAAATCCAACGGTGTATG 59.611 41.667 0.00 0.00 36.70 2.39
603 604 4.389382 CGTGTAAAATCCAACGGTGTATGA 59.611 41.667 0.00 0.00 32.55 2.15
604 605 5.445407 CGTGTAAAATCCAACGGTGTATGAG 60.445 44.000 0.00 0.00 32.55 2.90
605 606 4.393680 TGTAAAATCCAACGGTGTATGAGC 59.606 41.667 0.00 0.00 0.00 4.26
606 607 3.350219 AAATCCAACGGTGTATGAGCT 57.650 42.857 0.00 0.00 0.00 4.09
607 608 4.481368 AAATCCAACGGTGTATGAGCTA 57.519 40.909 0.00 0.00 0.00 3.32
608 609 3.735237 ATCCAACGGTGTATGAGCTAG 57.265 47.619 0.00 0.00 0.00 3.42
609 610 2.730382 TCCAACGGTGTATGAGCTAGA 58.270 47.619 0.00 0.00 0.00 2.43
610 611 3.296854 TCCAACGGTGTATGAGCTAGAT 58.703 45.455 0.00 0.00 0.00 1.98
611 612 3.704566 TCCAACGGTGTATGAGCTAGATT 59.295 43.478 0.00 0.00 0.00 2.40
612 613 4.891168 TCCAACGGTGTATGAGCTAGATTA 59.109 41.667 0.00 0.00 0.00 1.75
613 614 5.009710 TCCAACGGTGTATGAGCTAGATTAG 59.990 44.000 0.00 0.00 0.00 1.73
614 615 5.009710 CCAACGGTGTATGAGCTAGATTAGA 59.990 44.000 0.00 0.00 0.00 2.10
615 616 6.461092 CCAACGGTGTATGAGCTAGATTAGAA 60.461 42.308 0.00 0.00 0.00 2.10
616 617 6.902771 ACGGTGTATGAGCTAGATTAGAAT 57.097 37.500 0.00 0.00 0.00 2.40
617 618 7.997773 ACGGTGTATGAGCTAGATTAGAATA 57.002 36.000 0.00 0.00 0.00 1.75
618 619 8.046294 ACGGTGTATGAGCTAGATTAGAATAG 57.954 38.462 0.00 0.00 0.00 1.73
619 620 7.666388 ACGGTGTATGAGCTAGATTAGAATAGT 59.334 37.037 0.00 0.00 0.00 2.12
620 621 8.178964 CGGTGTATGAGCTAGATTAGAATAGTC 58.821 40.741 0.00 0.00 0.00 2.59
621 622 9.015367 GGTGTATGAGCTAGATTAGAATAGTCA 57.985 37.037 0.00 0.00 28.42 3.41
622 623 9.834628 GTGTATGAGCTAGATTAGAATAGTCAC 57.165 37.037 0.00 0.00 28.42 3.67
623 624 9.574516 TGTATGAGCTAGATTAGAATAGTCACA 57.425 33.333 0.00 0.00 28.42 3.58
625 626 8.704849 ATGAGCTAGATTAGAATAGTCACAGT 57.295 34.615 0.00 0.00 28.42 3.55
626 627 8.526667 TGAGCTAGATTAGAATAGTCACAGTT 57.473 34.615 0.00 0.00 28.42 3.16
627 628 8.972127 TGAGCTAGATTAGAATAGTCACAGTTT 58.028 33.333 0.00 0.00 28.42 2.66
628 629 9.810545 GAGCTAGATTAGAATAGTCACAGTTTT 57.189 33.333 0.00 0.00 28.42 2.43
642 643 8.528044 AGTCACAGTTTTTAAAATAAGGACCA 57.472 30.769 0.55 0.00 0.00 4.02
643 644 8.630037 AGTCACAGTTTTTAAAATAAGGACCAG 58.370 33.333 0.55 0.00 0.00 4.00
644 645 8.410912 GTCACAGTTTTTAAAATAAGGACCAGT 58.589 33.333 0.55 0.00 0.00 4.00
645 646 8.410141 TCACAGTTTTTAAAATAAGGACCAGTG 58.590 33.333 0.55 8.46 0.00 3.66
646 647 7.169140 CACAGTTTTTAAAATAAGGACCAGTGC 59.831 37.037 0.55 0.00 0.00 4.40
647 648 7.147811 ACAGTTTTTAAAATAAGGACCAGTGCA 60.148 33.333 0.55 0.00 0.00 4.57
648 649 7.872483 CAGTTTTTAAAATAAGGACCAGTGCAT 59.128 33.333 0.55 0.00 0.00 3.96
649 650 8.088365 AGTTTTTAAAATAAGGACCAGTGCATC 58.912 33.333 0.55 0.00 0.00 3.91
650 651 7.775053 TTTTAAAATAAGGACCAGTGCATCT 57.225 32.000 0.00 0.00 0.00 2.90
651 652 7.775053 TTTAAAATAAGGACCAGTGCATCTT 57.225 32.000 0.00 0.00 0.00 2.40
652 653 7.775053 TTAAAATAAGGACCAGTGCATCTTT 57.225 32.000 0.00 0.00 0.00 2.52
653 654 5.904362 AAATAAGGACCAGTGCATCTTTC 57.096 39.130 0.00 0.00 0.00 2.62
654 655 2.206576 AAGGACCAGTGCATCTTTCC 57.793 50.000 0.00 0.00 0.00 3.13
655 656 1.366319 AGGACCAGTGCATCTTTCCT 58.634 50.000 4.51 4.51 33.49 3.36
656 657 1.004044 AGGACCAGTGCATCTTTCCTG 59.996 52.381 8.62 1.56 35.73 3.86
657 658 1.003580 GGACCAGTGCATCTTTCCTGA 59.996 52.381 1.55 0.00 0.00 3.86
658 659 2.553028 GGACCAGTGCATCTTTCCTGAA 60.553 50.000 1.55 0.00 0.00 3.02
694 695 0.027324 GCGCAAATCTACTGCAGAGC 59.973 55.000 23.35 10.82 39.91 4.09
717 718 1.066914 GAAGCTGCTCGTGTCTTCTG 58.933 55.000 1.00 0.00 33.91 3.02
866 872 5.213519 TCTCTATAAATTCTTCCCCGTCCA 58.786 41.667 0.00 0.00 0.00 4.02
872 878 1.327690 TTCTTCCCCGTCCAGATCGG 61.328 60.000 0.00 0.00 46.49 4.18
890 897 1.681264 CGGCAGAAACCCAAGAAAGTT 59.319 47.619 0.00 0.00 0.00 2.66
891 898 2.287608 CGGCAGAAACCCAAGAAAGTTC 60.288 50.000 0.00 0.00 0.00 3.01
933 942 4.412199 AGAACGATCCCTCCCAAATCAATA 59.588 41.667 0.00 0.00 0.00 1.90
940 949 3.371917 CCCTCCCAAATCAATAGCTCACA 60.372 47.826 0.00 0.00 0.00 3.58
947 956 4.471904 AATCAATAGCTCACACTTCCGA 57.528 40.909 0.00 0.00 0.00 4.55
1502 1567 2.745492 GGAGTGCAGAGCAGTGGC 60.745 66.667 3.76 0.00 42.74 5.01
1530 1595 3.520862 GCCCCGGTCGTCGTGATA 61.521 66.667 0.00 0.00 37.11 2.15
1641 1733 3.086282 AGTCCGGTTTGTTGTTTGTTCT 58.914 40.909 0.00 0.00 0.00 3.01
1721 1816 0.968405 AATTTGTGAATGGCCGTGCT 59.032 45.000 4.06 0.00 0.00 4.40
1739 1834 3.553511 GTGCTGATCGTAGAATGTTCCTG 59.446 47.826 0.00 0.00 43.58 3.86
1774 2104 1.918609 GTCTTGTCAGCGTTCCGTATC 59.081 52.381 0.00 0.00 0.00 2.24
1917 2353 0.546598 GGTATGCACCTTACAGGCCT 59.453 55.000 0.00 0.00 42.11 5.19
1943 2379 4.459331 CGTTCCATTGCCACCGCG 62.459 66.667 0.00 0.00 38.08 6.46
1963 2402 2.187946 CTGGTTGGGCTAGCGAGG 59.812 66.667 9.00 0.00 0.00 4.63
2039 2478 1.066573 CATCATACATCTCCCGCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
2122 2561 0.737367 TTTCCTCAGTCGCGATGCAG 60.737 55.000 14.06 8.17 0.00 4.41
2233 2672 1.221466 CGCACTCATGGACACGTGTT 61.221 55.000 24.26 3.67 35.12 3.32
2246 2685 5.109903 GGACACGTGTTATTCAGCTAATCT 58.890 41.667 24.26 0.00 0.00 2.40
2259 2698 7.658179 TTCAGCTAATCTTGTCTACTTGTTG 57.342 36.000 0.00 0.00 0.00 3.33
2275 2714 3.166953 TTGCTTGTGCTGTCGTGCG 62.167 57.895 0.00 0.00 40.48 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.028284 TCTCTCTTTTCTTTTTGCATGGATATT 57.972 29.630 0.00 0.00 0.00 1.28
20 21 8.585471 TCTCTCTTTTCTTTTTGCATGGATAT 57.415 30.769 0.00 0.00 0.00 1.63
21 22 8.408043 TTCTCTCTTTTCTTTTTGCATGGATA 57.592 30.769 0.00 0.00 0.00 2.59
22 23 6.906157 TCTCTCTTTTCTTTTTGCATGGAT 57.094 33.333 0.00 0.00 0.00 3.41
23 24 6.713762 TTCTCTCTTTTCTTTTTGCATGGA 57.286 33.333 0.00 0.00 0.00 3.41
24 25 7.958053 ATTTCTCTCTTTTCTTTTTGCATGG 57.042 32.000 0.00 0.00 0.00 3.66
25 26 8.823818 ACAATTTCTCTCTTTTCTTTTTGCATG 58.176 29.630 0.00 0.00 0.00 4.06
26 27 8.953368 ACAATTTCTCTCTTTTCTTTTTGCAT 57.047 26.923 0.00 0.00 0.00 3.96
27 28 9.868277 TTACAATTTCTCTCTTTTCTTTTTGCA 57.132 25.926 0.00 0.00 0.00 4.08
49 50 9.817809 CCATTCTCAACTAGCTTACTTATTACA 57.182 33.333 0.00 0.00 0.00 2.41
50 51 8.766151 GCCATTCTCAACTAGCTTACTTATTAC 58.234 37.037 0.00 0.00 0.00 1.89
51 52 8.705594 AGCCATTCTCAACTAGCTTACTTATTA 58.294 33.333 0.00 0.00 0.00 0.98
52 53 7.569240 AGCCATTCTCAACTAGCTTACTTATT 58.431 34.615 0.00 0.00 0.00 1.40
53 54 7.130681 AGCCATTCTCAACTAGCTTACTTAT 57.869 36.000 0.00 0.00 0.00 1.73
54 55 6.546428 AGCCATTCTCAACTAGCTTACTTA 57.454 37.500 0.00 0.00 0.00 2.24
55 56 5.428184 AGCCATTCTCAACTAGCTTACTT 57.572 39.130 0.00 0.00 0.00 2.24
56 57 6.463614 CCATAGCCATTCTCAACTAGCTTACT 60.464 42.308 0.00 0.00 0.00 2.24
57 58 5.698545 CCATAGCCATTCTCAACTAGCTTAC 59.301 44.000 0.00 0.00 0.00 2.34
58 59 5.602561 TCCATAGCCATTCTCAACTAGCTTA 59.397 40.000 0.00 0.00 0.00 3.09
59 60 4.410228 TCCATAGCCATTCTCAACTAGCTT 59.590 41.667 0.00 0.00 0.00 3.74
60 61 3.969976 TCCATAGCCATTCTCAACTAGCT 59.030 43.478 0.00 0.00 0.00 3.32
61 62 4.314121 CTCCATAGCCATTCTCAACTAGC 58.686 47.826 0.00 0.00 0.00 3.42
62 63 4.314121 GCTCCATAGCCATTCTCAACTAG 58.686 47.826 0.00 0.00 43.40 2.57
63 64 3.243873 CGCTCCATAGCCATTCTCAACTA 60.244 47.826 0.00 0.00 46.68 2.24
64 65 2.484417 CGCTCCATAGCCATTCTCAACT 60.484 50.000 0.00 0.00 46.68 3.16
65 66 1.869767 CGCTCCATAGCCATTCTCAAC 59.130 52.381 0.00 0.00 46.68 3.18
66 67 1.202687 CCGCTCCATAGCCATTCTCAA 60.203 52.381 0.00 0.00 46.68 3.02
67 68 0.394192 CCGCTCCATAGCCATTCTCA 59.606 55.000 0.00 0.00 46.68 3.27
68 69 0.681733 TCCGCTCCATAGCCATTCTC 59.318 55.000 0.00 0.00 46.68 2.87
69 70 0.394565 GTCCGCTCCATAGCCATTCT 59.605 55.000 0.00 0.00 46.68 2.40
70 71 0.946221 CGTCCGCTCCATAGCCATTC 60.946 60.000 0.00 0.00 46.68 2.67
71 72 1.069765 CGTCCGCTCCATAGCCATT 59.930 57.895 0.00 0.00 46.68 3.16
72 73 1.686325 AACGTCCGCTCCATAGCCAT 61.686 55.000 0.00 0.00 46.68 4.40
73 74 2.292794 GAACGTCCGCTCCATAGCCA 62.293 60.000 0.00 0.00 46.68 4.75
74 75 1.591863 GAACGTCCGCTCCATAGCC 60.592 63.158 0.00 0.00 46.68 3.93
75 76 0.249489 ATGAACGTCCGCTCCATAGC 60.249 55.000 0.00 0.00 45.86 2.97
76 77 1.860950 CAATGAACGTCCGCTCCATAG 59.139 52.381 0.00 0.00 0.00 2.23
77 78 1.478916 TCAATGAACGTCCGCTCCATA 59.521 47.619 0.00 0.00 0.00 2.74
78 79 0.249120 TCAATGAACGTCCGCTCCAT 59.751 50.000 0.00 0.00 0.00 3.41
79 80 0.249120 ATCAATGAACGTCCGCTCCA 59.751 50.000 0.00 0.00 0.00 3.86
80 81 1.062587 CAATCAATGAACGTCCGCTCC 59.937 52.381 0.00 0.00 0.00 4.70
81 82 1.732259 ACAATCAATGAACGTCCGCTC 59.268 47.619 0.00 0.00 0.00 5.03
82 83 1.464608 CACAATCAATGAACGTCCGCT 59.535 47.619 0.00 0.00 0.00 5.52
83 84 1.465689 CCACAATCAATGAACGTCCGC 60.466 52.381 0.00 0.00 0.00 5.54
84 85 1.465689 GCCACAATCAATGAACGTCCG 60.466 52.381 0.00 0.00 0.00 4.79
85 86 1.539388 TGCCACAATCAATGAACGTCC 59.461 47.619 0.00 0.00 0.00 4.79
86 87 2.987413 TGCCACAATCAATGAACGTC 57.013 45.000 0.00 0.00 0.00 4.34
87 88 2.819019 TCATGCCACAATCAATGAACGT 59.181 40.909 0.00 0.00 0.00 3.99
88 89 3.490800 TCATGCCACAATCAATGAACG 57.509 42.857 0.00 0.00 0.00 3.95
89 90 9.701098 ATTATATTCATGCCACAATCAATGAAC 57.299 29.630 0.00 0.00 31.92 3.18
90 91 9.917129 GATTATATTCATGCCACAATCAATGAA 57.083 29.630 0.00 0.00 33.37 2.57
91 92 8.525316 GGATTATATTCATGCCACAATCAATGA 58.475 33.333 0.00 0.00 0.00 2.57
92 93 8.528643 AGGATTATATTCATGCCACAATCAATG 58.471 33.333 0.00 0.00 0.00 2.82
93 94 8.528643 CAGGATTATATTCATGCCACAATCAAT 58.471 33.333 0.00 0.00 0.00 2.57
94 95 7.724951 TCAGGATTATATTCATGCCACAATCAA 59.275 33.333 4.76 0.00 0.00 2.57
95 96 7.175467 GTCAGGATTATATTCATGCCACAATCA 59.825 37.037 4.76 0.00 0.00 2.57
96 97 7.392673 AGTCAGGATTATATTCATGCCACAATC 59.607 37.037 4.76 0.00 0.00 2.67
97 98 7.236529 AGTCAGGATTATATTCATGCCACAAT 58.763 34.615 4.76 0.00 0.00 2.71
98 99 6.604171 AGTCAGGATTATATTCATGCCACAA 58.396 36.000 4.76 0.00 0.00 3.33
99 100 6.191657 AGTCAGGATTATATTCATGCCACA 57.808 37.500 4.76 0.00 0.00 4.17
100 101 7.013655 ACAAAGTCAGGATTATATTCATGCCAC 59.986 37.037 4.76 0.48 0.00 5.01
101 102 7.062322 ACAAAGTCAGGATTATATTCATGCCA 58.938 34.615 4.76 0.00 0.00 4.92
102 103 7.516198 ACAAAGTCAGGATTATATTCATGCC 57.484 36.000 4.76 0.00 0.00 4.40
103 104 9.807649 AAAACAAAGTCAGGATTATATTCATGC 57.192 29.630 4.76 1.67 0.00 4.06
127 128 3.886505 AGTCGCTATTGACCAACCAAAAA 59.113 39.130 0.00 0.00 39.77 1.94
128 129 3.252215 CAGTCGCTATTGACCAACCAAAA 59.748 43.478 0.00 0.00 39.77 2.44
129 130 2.811431 CAGTCGCTATTGACCAACCAAA 59.189 45.455 0.00 0.00 39.77 3.28
130 131 2.037902 TCAGTCGCTATTGACCAACCAA 59.962 45.455 0.00 0.00 39.77 3.67
131 132 1.621317 TCAGTCGCTATTGACCAACCA 59.379 47.619 0.00 0.00 39.77 3.67
132 133 2.271800 CTCAGTCGCTATTGACCAACC 58.728 52.381 0.00 0.00 39.77 3.77
133 134 1.661112 GCTCAGTCGCTATTGACCAAC 59.339 52.381 0.00 0.00 39.77 3.77
134 135 1.550524 AGCTCAGTCGCTATTGACCAA 59.449 47.619 0.00 0.00 39.77 3.67
135 136 1.186200 AGCTCAGTCGCTATTGACCA 58.814 50.000 0.00 0.00 39.77 4.02
136 137 3.376540 CTTAGCTCAGTCGCTATTGACC 58.623 50.000 0.00 0.00 41.71 4.02
137 138 2.792116 GCTTAGCTCAGTCGCTATTGAC 59.208 50.000 0.00 0.00 41.71 3.18
138 139 2.541794 CGCTTAGCTCAGTCGCTATTGA 60.542 50.000 1.76 0.00 41.71 2.57
139 140 1.783711 CGCTTAGCTCAGTCGCTATTG 59.216 52.381 1.76 0.00 41.71 1.90
140 141 1.676529 TCGCTTAGCTCAGTCGCTATT 59.323 47.619 1.76 0.00 41.71 1.73
141 142 1.309950 TCGCTTAGCTCAGTCGCTAT 58.690 50.000 1.76 0.00 41.71 2.97
142 143 1.309950 ATCGCTTAGCTCAGTCGCTA 58.690 50.000 1.76 0.00 41.30 4.26
143 144 1.309950 TATCGCTTAGCTCAGTCGCT 58.690 50.000 1.76 0.00 43.83 4.93
144 145 2.339728 ATATCGCTTAGCTCAGTCGC 57.660 50.000 1.76 0.00 0.00 5.19
145 146 5.453648 ACTTAATATCGCTTAGCTCAGTCG 58.546 41.667 1.76 0.00 0.00 4.18
146 147 8.855279 CATTACTTAATATCGCTTAGCTCAGTC 58.145 37.037 1.76 0.00 0.00 3.51
147 148 7.815068 CCATTACTTAATATCGCTTAGCTCAGT 59.185 37.037 1.76 0.00 0.00 3.41
148 149 8.029522 TCCATTACTTAATATCGCTTAGCTCAG 58.970 37.037 1.76 0.00 0.00 3.35
149 150 7.892609 TCCATTACTTAATATCGCTTAGCTCA 58.107 34.615 1.76 0.00 0.00 4.26
150 151 8.758633 TTCCATTACTTAATATCGCTTAGCTC 57.241 34.615 1.76 0.00 0.00 4.09
151 152 9.155975 CATTCCATTACTTAATATCGCTTAGCT 57.844 33.333 1.76 0.00 0.00 3.32
152 153 8.936864 ACATTCCATTACTTAATATCGCTTAGC 58.063 33.333 0.00 0.00 0.00 3.09
163 164 9.030452 ACCTGCAAATTACATTCCATTACTTAA 57.970 29.630 0.00 0.00 0.00 1.85
164 165 8.588290 ACCTGCAAATTACATTCCATTACTTA 57.412 30.769 0.00 0.00 0.00 2.24
165 166 7.480760 ACCTGCAAATTACATTCCATTACTT 57.519 32.000 0.00 0.00 0.00 2.24
166 167 8.588290 TTACCTGCAAATTACATTCCATTACT 57.412 30.769 0.00 0.00 0.00 2.24
167 168 9.646427 TTTTACCTGCAAATTACATTCCATTAC 57.354 29.630 0.00 0.00 0.00 1.89
169 170 9.737844 ATTTTTACCTGCAAATTACATTCCATT 57.262 25.926 0.00 0.00 0.00 3.16
199 200 9.961264 TCTTGTATAACATACACATTTTGGGTA 57.039 29.630 0.00 0.00 41.00 3.69
200 201 8.871629 TCTTGTATAACATACACATTTTGGGT 57.128 30.769 0.00 0.00 37.91 4.51
265 266 9.032624 CGGATATAGGGAGTAGGAAGAAAATAA 57.967 37.037 0.00 0.00 0.00 1.40
266 267 7.618512 CCGGATATAGGGAGTAGGAAGAAAATA 59.381 40.741 0.00 0.00 0.00 1.40
267 268 6.440965 CCGGATATAGGGAGTAGGAAGAAAAT 59.559 42.308 0.00 0.00 0.00 1.82
268 269 5.778750 CCGGATATAGGGAGTAGGAAGAAAA 59.221 44.000 0.00 0.00 0.00 2.29
269 270 5.075483 TCCGGATATAGGGAGTAGGAAGAAA 59.925 44.000 0.00 0.00 0.00 2.52
270 271 4.604930 TCCGGATATAGGGAGTAGGAAGAA 59.395 45.833 0.00 0.00 0.00 2.52
271 272 4.181520 TCCGGATATAGGGAGTAGGAAGA 58.818 47.826 0.00 0.00 0.00 2.87
272 273 4.587976 TCCGGATATAGGGAGTAGGAAG 57.412 50.000 0.00 0.00 0.00 3.46
273 274 5.343833 TTTCCGGATATAGGGAGTAGGAA 57.656 43.478 4.15 0.00 35.06 3.36
274 275 5.547631 ATTTCCGGATATAGGGAGTAGGA 57.452 43.478 4.15 0.00 33.01 2.94
275 276 6.433441 AGTATTTCCGGATATAGGGAGTAGG 58.567 44.000 14.13 0.00 33.01 3.18
276 277 7.396623 ACAAGTATTTCCGGATATAGGGAGTAG 59.603 40.741 14.13 4.55 33.01 2.57
277 278 7.243824 ACAAGTATTTCCGGATATAGGGAGTA 58.756 38.462 14.13 0.00 33.01 2.59
278 279 6.082707 ACAAGTATTTCCGGATATAGGGAGT 58.917 40.000 14.13 8.53 33.01 3.85
279 280 6.607004 ACAAGTATTTCCGGATATAGGGAG 57.393 41.667 14.13 8.01 33.01 4.30
280 281 5.184479 CGACAAGTATTTCCGGATATAGGGA 59.816 44.000 14.13 0.00 0.00 4.20
281 282 5.184479 TCGACAAGTATTTCCGGATATAGGG 59.816 44.000 14.13 9.49 0.00 3.53
282 283 6.263516 TCGACAAGTATTTCCGGATATAGG 57.736 41.667 14.13 9.78 0.00 2.57
283 284 8.583810 TTTTCGACAAGTATTTCCGGATATAG 57.416 34.615 14.13 6.50 0.00 1.31
284 285 8.945481 TTTTTCGACAAGTATTTCCGGATATA 57.055 30.769 4.15 7.92 0.00 0.86
285 286 7.852971 TTTTTCGACAAGTATTTCCGGATAT 57.147 32.000 4.15 9.16 0.00 1.63
311 312 9.832445 GGACTAAATTATGTCTAGAAACATCCA 57.168 33.333 0.00 0.00 40.32 3.41
332 333 9.310449 GGTTAGAAATGGATGTATCTAGGACTA 57.690 37.037 0.00 0.00 0.00 2.59
333 334 7.789831 TGGTTAGAAATGGATGTATCTAGGACT 59.210 37.037 0.00 0.00 0.00 3.85
334 335 7.963532 TGGTTAGAAATGGATGTATCTAGGAC 58.036 38.462 0.00 0.00 0.00 3.85
335 336 8.742125 ATGGTTAGAAATGGATGTATCTAGGA 57.258 34.615 0.00 0.00 0.00 2.94
336 337 9.799106 AAATGGTTAGAAATGGATGTATCTAGG 57.201 33.333 0.00 0.00 0.00 3.02
339 340 8.840321 CGAAAATGGTTAGAAATGGATGTATCT 58.160 33.333 0.00 0.00 0.00 1.98
340 341 7.591426 GCGAAAATGGTTAGAAATGGATGTATC 59.409 37.037 0.00 0.00 0.00 2.24
341 342 7.425606 GCGAAAATGGTTAGAAATGGATGTAT 58.574 34.615 0.00 0.00 0.00 2.29
342 343 6.457663 CGCGAAAATGGTTAGAAATGGATGTA 60.458 38.462 0.00 0.00 0.00 2.29
343 344 5.650543 GCGAAAATGGTTAGAAATGGATGT 58.349 37.500 0.00 0.00 0.00 3.06
344 345 4.734854 CGCGAAAATGGTTAGAAATGGATG 59.265 41.667 0.00 0.00 0.00 3.51
345 346 4.638421 TCGCGAAAATGGTTAGAAATGGAT 59.362 37.500 6.20 0.00 0.00 3.41
346 347 4.004314 TCGCGAAAATGGTTAGAAATGGA 58.996 39.130 6.20 0.00 0.00 3.41
347 348 4.095610 GTCGCGAAAATGGTTAGAAATGG 58.904 43.478 12.06 0.00 0.00 3.16
348 349 4.717991 TGTCGCGAAAATGGTTAGAAATG 58.282 39.130 12.06 0.00 0.00 2.32
349 350 5.048991 ACTTGTCGCGAAAATGGTTAGAAAT 60.049 36.000 13.05 0.00 0.00 2.17
350 351 4.273969 ACTTGTCGCGAAAATGGTTAGAAA 59.726 37.500 13.05 0.00 0.00 2.52
351 352 3.810941 ACTTGTCGCGAAAATGGTTAGAA 59.189 39.130 13.05 0.00 0.00 2.10
352 353 3.395639 ACTTGTCGCGAAAATGGTTAGA 58.604 40.909 13.05 0.00 0.00 2.10
353 354 3.806316 ACTTGTCGCGAAAATGGTTAG 57.194 42.857 13.05 1.66 0.00 2.34
354 355 5.866335 ATTACTTGTCGCGAAAATGGTTA 57.134 34.783 13.05 2.36 0.00 2.85
355 356 4.759516 ATTACTTGTCGCGAAAATGGTT 57.240 36.364 13.05 0.17 0.00 3.67
356 357 4.379082 GGAATTACTTGTCGCGAAAATGGT 60.379 41.667 13.05 10.53 0.00 3.55
357 358 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
358 359 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
359 360 3.181514 CCGGAATTACTTGTCGCGAAAAT 60.182 43.478 13.05 5.74 0.00 1.82
360 361 2.158058 CCGGAATTACTTGTCGCGAAAA 59.842 45.455 12.06 12.01 0.00 2.29
361 362 1.727880 CCGGAATTACTTGTCGCGAAA 59.272 47.619 12.06 0.54 0.00 3.46
362 363 1.067706 TCCGGAATTACTTGTCGCGAA 60.068 47.619 12.06 0.00 0.00 4.70
363 364 0.527113 TCCGGAATTACTTGTCGCGA 59.473 50.000 3.71 3.71 0.00 5.87
364 365 0.643820 GTCCGGAATTACTTGTCGCG 59.356 55.000 5.23 0.00 0.00 5.87
365 366 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
366 367 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
367 368 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
368 369 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
369 370 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
370 371 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
371 372 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
372 373 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
373 374 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
374 375 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
375 376 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
376 377 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
377 378 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
378 379 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
379 380 1.455217 ATGGTACTCCCTCCGTCCG 60.455 63.158 0.00 0.00 0.00 4.79
380 381 0.686769 ACATGGTACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
381 382 1.192428 AACATGGTACTCCCTCCGTC 58.808 55.000 0.00 0.00 0.00 4.79
382 383 2.537633 TAACATGGTACTCCCTCCGT 57.462 50.000 0.00 0.00 0.00 4.69
383 384 4.831155 TCTTATAACATGGTACTCCCTCCG 59.169 45.833 0.00 0.00 0.00 4.63
384 385 5.279556 GCTCTTATAACATGGTACTCCCTCC 60.280 48.000 0.00 0.00 0.00 4.30
385 386 5.304614 TGCTCTTATAACATGGTACTCCCTC 59.695 44.000 0.00 0.00 0.00 4.30
386 387 5.216622 TGCTCTTATAACATGGTACTCCCT 58.783 41.667 0.00 0.00 0.00 4.20
387 388 5.546621 TGCTCTTATAACATGGTACTCCC 57.453 43.478 0.00 0.00 0.00 4.30
388 389 8.451908 AAAATGCTCTTATAACATGGTACTCC 57.548 34.615 0.00 0.00 0.00 3.85
442 443 9.543231 ACTCCCTCCGTCTCATAATAATATAAA 57.457 33.333 0.00 0.00 0.00 1.40
445 446 9.716556 ATTACTCCCTCCGTCTCATAATAATAT 57.283 33.333 0.00 0.00 0.00 1.28
446 447 9.543231 AATTACTCCCTCCGTCTCATAATAATA 57.457 33.333 0.00 0.00 0.00 0.98
447 448 8.437274 AATTACTCCCTCCGTCTCATAATAAT 57.563 34.615 0.00 0.00 0.00 1.28
448 449 7.728981 AGAATTACTCCCTCCGTCTCATAATAA 59.271 37.037 0.00 0.00 0.00 1.40
449 450 7.239438 AGAATTACTCCCTCCGTCTCATAATA 58.761 38.462 0.00 0.00 0.00 0.98
450 451 6.078664 AGAATTACTCCCTCCGTCTCATAAT 58.921 40.000 0.00 0.00 0.00 1.28
451 452 5.455872 AGAATTACTCCCTCCGTCTCATAA 58.544 41.667 0.00 0.00 0.00 1.90
452 453 5.063017 AGAATTACTCCCTCCGTCTCATA 57.937 43.478 0.00 0.00 0.00 2.15
453 454 3.892588 GAGAATTACTCCCTCCGTCTCAT 59.107 47.826 0.00 0.00 39.53 2.90
454 455 3.288964 GAGAATTACTCCCTCCGTCTCA 58.711 50.000 0.00 0.00 39.53 3.27
455 456 3.288964 TGAGAATTACTCCCTCCGTCTC 58.711 50.000 0.00 0.00 44.34 3.36
456 457 3.383698 TGAGAATTACTCCCTCCGTCT 57.616 47.619 0.00 0.00 44.34 4.18
457 458 3.892588 AGATGAGAATTACTCCCTCCGTC 59.107 47.826 0.00 0.00 44.34 4.79
458 459 3.917300 AGATGAGAATTACTCCCTCCGT 58.083 45.455 0.00 0.00 44.34 4.69
459 460 6.597832 AATAGATGAGAATTACTCCCTCCG 57.402 41.667 0.00 0.00 44.34 4.63
460 461 8.655901 AGAAAATAGATGAGAATTACTCCCTCC 58.344 37.037 0.00 0.00 44.34 4.30
461 462 9.705290 GAGAAAATAGATGAGAATTACTCCCTC 57.295 37.037 0.00 0.00 44.34 4.30
462 463 8.655901 GGAGAAAATAGATGAGAATTACTCCCT 58.344 37.037 0.00 0.00 44.34 4.20
463 464 7.600752 CGGAGAAAATAGATGAGAATTACTCCC 59.399 40.741 0.00 0.00 44.34 4.30
464 465 8.145122 ACGGAGAAAATAGATGAGAATTACTCC 58.855 37.037 0.00 0.00 44.34 3.85
465 466 9.187455 GACGGAGAAAATAGATGAGAATTACTC 57.813 37.037 0.00 0.00 45.11 2.59
466 467 8.919145 AGACGGAGAAAATAGATGAGAATTACT 58.081 33.333 0.00 0.00 0.00 2.24
467 468 9.187455 GAGACGGAGAAAATAGATGAGAATTAC 57.813 37.037 0.00 0.00 0.00 1.89
468 469 8.914011 TGAGACGGAGAAAATAGATGAGAATTA 58.086 33.333 0.00 0.00 0.00 1.40
469 470 7.786030 TGAGACGGAGAAAATAGATGAGAATT 58.214 34.615 0.00 0.00 0.00 2.17
470 471 7.353414 TGAGACGGAGAAAATAGATGAGAAT 57.647 36.000 0.00 0.00 0.00 2.40
471 472 6.775594 TGAGACGGAGAAAATAGATGAGAA 57.224 37.500 0.00 0.00 0.00 2.87
472 473 6.968263 ATGAGACGGAGAAAATAGATGAGA 57.032 37.500 0.00 0.00 0.00 3.27
502 503 9.987272 AGACTTTATTAGCTTGCAGAAAAATTT 57.013 25.926 0.00 0.00 0.00 1.82
503 504 9.631452 GAGACTTTATTAGCTTGCAGAAAAATT 57.369 29.630 0.00 0.00 0.00 1.82
504 505 8.796475 TGAGACTTTATTAGCTTGCAGAAAAAT 58.204 29.630 0.00 0.00 0.00 1.82
505 506 8.165239 TGAGACTTTATTAGCTTGCAGAAAAA 57.835 30.769 0.00 0.00 0.00 1.94
506 507 7.744087 TGAGACTTTATTAGCTTGCAGAAAA 57.256 32.000 0.00 0.00 0.00 2.29
507 508 7.826252 AGATGAGACTTTATTAGCTTGCAGAAA 59.174 33.333 0.00 0.00 0.00 2.52
508 509 7.334090 AGATGAGACTTTATTAGCTTGCAGAA 58.666 34.615 0.00 0.00 0.00 3.02
509 510 6.882656 AGATGAGACTTTATTAGCTTGCAGA 58.117 36.000 0.00 0.00 0.00 4.26
510 511 8.547069 GTTAGATGAGACTTTATTAGCTTGCAG 58.453 37.037 0.00 0.00 0.00 4.41
511 512 8.260818 AGTTAGATGAGACTTTATTAGCTTGCA 58.739 33.333 0.00 0.00 0.00 4.08
512 513 8.655651 AGTTAGATGAGACTTTATTAGCTTGC 57.344 34.615 0.00 0.00 0.00 4.01
513 514 9.255304 GGAGTTAGATGAGACTTTATTAGCTTG 57.745 37.037 0.00 0.00 0.00 4.01
514 515 9.207868 AGGAGTTAGATGAGACTTTATTAGCTT 57.792 33.333 0.00 0.00 0.00 3.74
515 516 8.776061 AGGAGTTAGATGAGACTTTATTAGCT 57.224 34.615 0.00 0.00 0.00 3.32
516 517 9.902196 GTAGGAGTTAGATGAGACTTTATTAGC 57.098 37.037 0.00 0.00 0.00 3.09
519 520 9.482175 AGTGTAGGAGTTAGATGAGACTTTATT 57.518 33.333 0.00 0.00 0.00 1.40
521 522 9.393512 GTAGTGTAGGAGTTAGATGAGACTTTA 57.606 37.037 0.00 0.00 0.00 1.85
522 523 8.110908 AGTAGTGTAGGAGTTAGATGAGACTTT 58.889 37.037 0.00 0.00 0.00 2.66
523 524 7.635648 AGTAGTGTAGGAGTTAGATGAGACTT 58.364 38.462 0.00 0.00 0.00 3.01
524 525 7.202972 AGTAGTGTAGGAGTTAGATGAGACT 57.797 40.000 0.00 0.00 0.00 3.24
525 526 7.553402 TCAAGTAGTGTAGGAGTTAGATGAGAC 59.447 40.741 0.00 0.00 0.00 3.36
526 527 7.631007 TCAAGTAGTGTAGGAGTTAGATGAGA 58.369 38.462 0.00 0.00 0.00 3.27
527 528 7.867305 TCAAGTAGTGTAGGAGTTAGATGAG 57.133 40.000 0.00 0.00 0.00 2.90
528 529 8.824756 AATCAAGTAGTGTAGGAGTTAGATGA 57.175 34.615 0.00 0.00 0.00 2.92
531 532 8.964772 GGTTAATCAAGTAGTGTAGGAGTTAGA 58.035 37.037 0.00 0.00 0.00 2.10
532 533 8.746530 TGGTTAATCAAGTAGTGTAGGAGTTAG 58.253 37.037 0.00 0.00 0.00 2.34
533 534 8.654485 TGGTTAATCAAGTAGTGTAGGAGTTA 57.346 34.615 0.00 0.00 0.00 2.24
534 535 7.549147 TGGTTAATCAAGTAGTGTAGGAGTT 57.451 36.000 0.00 0.00 0.00 3.01
535 536 7.549147 TTGGTTAATCAAGTAGTGTAGGAGT 57.451 36.000 0.00 0.00 0.00 3.85
536 537 8.842358 TTTTGGTTAATCAAGTAGTGTAGGAG 57.158 34.615 0.66 0.00 0.00 3.69
560 561 7.284919 ACACGAAGATTTGTAGGGAATTTTT 57.715 32.000 0.00 0.00 0.00 1.94
561 562 6.894339 ACACGAAGATTTGTAGGGAATTTT 57.106 33.333 0.00 0.00 0.00 1.82
562 563 7.989416 TTACACGAAGATTTGTAGGGAATTT 57.011 32.000 0.00 0.00 30.03 1.82
563 564 7.989416 TTTACACGAAGATTTGTAGGGAATT 57.011 32.000 0.00 0.00 30.03 2.17
564 565 7.989416 TTTTACACGAAGATTTGTAGGGAAT 57.011 32.000 0.00 0.00 30.03 3.01
565 566 7.120138 GGATTTTACACGAAGATTTGTAGGGAA 59.880 37.037 0.00 0.00 30.03 3.97
566 567 6.596497 GGATTTTACACGAAGATTTGTAGGGA 59.404 38.462 0.00 0.00 30.03 4.20
567 568 6.373216 TGGATTTTACACGAAGATTTGTAGGG 59.627 38.462 0.00 0.00 30.03 3.53
568 569 7.372451 TGGATTTTACACGAAGATTTGTAGG 57.628 36.000 0.00 0.00 30.03 3.18
569 570 7.477422 CGTTGGATTTTACACGAAGATTTGTAG 59.523 37.037 0.00 0.00 30.03 2.74
570 571 7.292292 CGTTGGATTTTACACGAAGATTTGTA 58.708 34.615 0.00 0.00 0.00 2.41
571 572 6.140110 CGTTGGATTTTACACGAAGATTTGT 58.860 36.000 0.00 0.00 0.00 2.83
572 573 5.567534 CCGTTGGATTTTACACGAAGATTTG 59.432 40.000 0.00 0.00 0.00 2.32
573 574 5.239963 ACCGTTGGATTTTACACGAAGATTT 59.760 36.000 0.00 0.00 0.00 2.17
574 575 4.758165 ACCGTTGGATTTTACACGAAGATT 59.242 37.500 0.00 0.00 0.00 2.40
575 576 4.153475 CACCGTTGGATTTTACACGAAGAT 59.847 41.667 0.00 0.00 0.00 2.40
576 577 3.495377 CACCGTTGGATTTTACACGAAGA 59.505 43.478 0.00 0.00 0.00 2.87
577 578 3.249080 ACACCGTTGGATTTTACACGAAG 59.751 43.478 0.00 0.00 0.00 3.79
578 579 3.204526 ACACCGTTGGATTTTACACGAA 58.795 40.909 0.00 0.00 0.00 3.85
579 580 2.836262 ACACCGTTGGATTTTACACGA 58.164 42.857 0.00 0.00 0.00 4.35
580 581 4.389382 TCATACACCGTTGGATTTTACACG 59.611 41.667 0.00 0.00 0.00 4.49
581 582 5.672819 GCTCATACACCGTTGGATTTTACAC 60.673 44.000 0.00 0.00 0.00 2.90
582 583 4.393680 GCTCATACACCGTTGGATTTTACA 59.606 41.667 0.00 0.00 0.00 2.41
583 584 4.634443 AGCTCATACACCGTTGGATTTTAC 59.366 41.667 0.00 0.00 0.00 2.01
584 585 4.839121 AGCTCATACACCGTTGGATTTTA 58.161 39.130 0.00 0.00 0.00 1.52
585 586 3.686016 AGCTCATACACCGTTGGATTTT 58.314 40.909 0.00 0.00 0.00 1.82
586 587 3.350219 AGCTCATACACCGTTGGATTT 57.650 42.857 0.00 0.00 0.00 2.17
587 588 3.704566 TCTAGCTCATACACCGTTGGATT 59.295 43.478 0.00 0.00 0.00 3.01
588 589 3.296854 TCTAGCTCATACACCGTTGGAT 58.703 45.455 0.00 0.00 0.00 3.41
589 590 2.730382 TCTAGCTCATACACCGTTGGA 58.270 47.619 0.00 0.00 0.00 3.53
590 591 3.735237 ATCTAGCTCATACACCGTTGG 57.265 47.619 0.00 0.00 0.00 3.77
591 592 6.073327 TCTAATCTAGCTCATACACCGTTG 57.927 41.667 0.00 0.00 0.00 4.10
592 593 6.710597 TTCTAATCTAGCTCATACACCGTT 57.289 37.500 0.00 0.00 0.00 4.44
593 594 6.902771 ATTCTAATCTAGCTCATACACCGT 57.097 37.500 0.00 0.00 0.00 4.83
594 595 8.046294 ACTATTCTAATCTAGCTCATACACCG 57.954 38.462 0.00 0.00 0.00 4.94
595 596 9.015367 TGACTATTCTAATCTAGCTCATACACC 57.985 37.037 0.00 0.00 0.00 4.16
596 597 9.834628 GTGACTATTCTAATCTAGCTCATACAC 57.165 37.037 0.00 0.00 0.00 2.90
597 598 9.574516 TGTGACTATTCTAATCTAGCTCATACA 57.425 33.333 0.00 0.00 0.00 2.29
599 600 9.800572 ACTGTGACTATTCTAATCTAGCTCATA 57.199 33.333 0.00 0.00 0.00 2.15
600 601 8.704849 ACTGTGACTATTCTAATCTAGCTCAT 57.295 34.615 0.00 0.00 0.00 2.90
601 602 8.526667 AACTGTGACTATTCTAATCTAGCTCA 57.473 34.615 0.00 0.00 0.00 4.26
602 603 9.810545 AAAACTGTGACTATTCTAATCTAGCTC 57.189 33.333 0.00 0.00 0.00 4.09
616 617 9.629878 TGGTCCTTATTTTAAAAACTGTGACTA 57.370 29.630 4.44 4.31 0.00 2.59
617 618 8.528044 TGGTCCTTATTTTAAAAACTGTGACT 57.472 30.769 4.44 0.00 0.00 3.41
618 619 8.410912 ACTGGTCCTTATTTTAAAAACTGTGAC 58.589 33.333 4.44 8.20 0.00 3.67
619 620 8.410141 CACTGGTCCTTATTTTAAAAACTGTGA 58.590 33.333 4.44 0.00 0.00 3.58
620 621 7.169140 GCACTGGTCCTTATTTTAAAAACTGTG 59.831 37.037 4.44 11.43 0.00 3.66
621 622 7.147811 TGCACTGGTCCTTATTTTAAAAACTGT 60.148 33.333 4.44 0.27 0.00 3.55
622 623 7.206687 TGCACTGGTCCTTATTTTAAAAACTG 58.793 34.615 4.44 0.00 0.00 3.16
623 624 7.354751 TGCACTGGTCCTTATTTTAAAAACT 57.645 32.000 4.44 0.00 0.00 2.66
624 625 8.088365 AGATGCACTGGTCCTTATTTTAAAAAC 58.912 33.333 4.44 0.00 0.00 2.43
625 626 8.189119 AGATGCACTGGTCCTTATTTTAAAAA 57.811 30.769 4.44 0.00 0.00 1.94
626 627 7.775053 AGATGCACTGGTCCTTATTTTAAAA 57.225 32.000 2.51 2.51 0.00 1.52
627 628 7.775053 AAGATGCACTGGTCCTTATTTTAAA 57.225 32.000 0.00 0.00 0.00 1.52
628 629 7.093945 GGAAAGATGCACTGGTCCTTATTTTAA 60.094 37.037 0.00 0.00 33.39 1.52
629 630 6.377146 GGAAAGATGCACTGGTCCTTATTTTA 59.623 38.462 0.00 0.00 33.39 1.52
630 631 5.185828 GGAAAGATGCACTGGTCCTTATTTT 59.814 40.000 0.00 0.00 33.39 1.82
631 632 4.706962 GGAAAGATGCACTGGTCCTTATTT 59.293 41.667 0.00 0.00 33.39 1.40
632 633 4.018050 AGGAAAGATGCACTGGTCCTTATT 60.018 41.667 12.28 0.00 39.49 1.40
633 634 3.525199 AGGAAAGATGCACTGGTCCTTAT 59.475 43.478 12.28 0.00 39.49 1.73
634 635 2.912956 AGGAAAGATGCACTGGTCCTTA 59.087 45.455 12.28 0.00 39.49 2.69
635 636 1.707427 AGGAAAGATGCACTGGTCCTT 59.293 47.619 12.28 0.00 39.49 3.36
636 637 1.004044 CAGGAAAGATGCACTGGTCCT 59.996 52.381 12.28 12.28 41.68 3.85
637 638 1.003580 TCAGGAAAGATGCACTGGTCC 59.996 52.381 0.00 0.08 35.22 4.46
638 639 2.479566 TCAGGAAAGATGCACTGGTC 57.520 50.000 0.00 0.00 0.00 4.02
639 640 2.957402 TTCAGGAAAGATGCACTGGT 57.043 45.000 0.00 0.00 0.00 4.00
640 641 4.589216 TTTTTCAGGAAAGATGCACTGG 57.411 40.909 0.00 0.00 0.00 4.00
658 659 2.159114 TGCGCTGCTCCTTTTTCTTTTT 60.159 40.909 9.73 0.00 0.00 1.94
694 695 1.739562 GACACGAGCAGCTTCTGGG 60.740 63.158 0.00 0.00 31.21 4.45
717 718 2.589442 TTTGGTCCGGTGTCGTGC 60.589 61.111 0.00 0.00 33.95 5.34
866 872 0.984230 TCTTGGGTTTCTGCCGATCT 59.016 50.000 0.00 0.00 0.00 2.75
872 878 2.616842 TCGAACTTTCTTGGGTTTCTGC 59.383 45.455 0.00 0.00 0.00 4.26
890 897 1.872388 TTGATCGGTGCTTTGTTCGA 58.128 45.000 0.00 0.00 36.07 3.71
891 898 2.223144 TCTTTGATCGGTGCTTTGTTCG 59.777 45.455 0.00 0.00 0.00 3.95
933 942 0.976641 TGGAATCGGAAGTGTGAGCT 59.023 50.000 0.00 0.00 0.00 4.09
940 949 4.398319 ACTGATTTGTTGGAATCGGAAGT 58.602 39.130 12.07 0.01 42.45 3.01
947 956 5.256474 AGGAATCGACTGATTTGTTGGAAT 58.744 37.500 0.00 0.00 44.79 3.01
1530 1595 6.350194 GGCCGGACTCTTCTTGATTTTATTTT 60.350 38.462 5.05 0.00 0.00 1.82
1721 1816 4.950475 AGAGTCAGGAACATTCTACGATCA 59.050 41.667 0.00 0.00 0.00 2.92
1739 1834 2.128035 CAAGACACCGTTGTGAGAGTC 58.872 52.381 0.00 0.00 45.76 3.36
1926 2362 4.459331 CGCGGTGGCAATGGAACG 62.459 66.667 0.00 0.00 39.92 3.95
1963 2402 2.507324 GGGAGCACGACGAGAAGC 60.507 66.667 0.00 0.00 0.00 3.86
2224 2663 6.090898 ACAAGATTAGCTGAATAACACGTGTC 59.909 38.462 23.61 10.05 0.00 3.67
2233 2672 9.371136 CAACAAGTAGACAAGATTAGCTGAATA 57.629 33.333 0.00 0.00 0.00 1.75
2246 2685 3.065233 CAGCACAAGCAACAAGTAGACAA 59.935 43.478 0.00 0.00 45.49 3.18
2259 2698 2.646799 AAACGCACGACAGCACAAGC 62.647 55.000 0.00 0.00 42.56 4.01
2275 2714 2.502142 AATTCCCGTCCCTGGTAAAC 57.498 50.000 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.