Multiple sequence alignment - TraesCS4D01G212700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G212700 chr4D 100.000 7363 0 0 1 7363 365842770 365835408 0.000000e+00 13598.0
1 TraesCS4D01G212700 chr4D 98.529 204 3 0 209 412 365842071 365841868 1.950000e-95 361.0
2 TraesCS4D01G212700 chr4D 98.529 204 3 0 700 903 365842562 365842359 1.950000e-95 361.0
3 TraesCS4D01G212700 chr4D 88.623 167 19 0 19 185 447126055 447125889 3.480000e-48 204.0
4 TraesCS4D01G212700 chr4A 96.020 3216 77 16 2888 6074 99031600 99034793 0.000000e+00 5182.0
5 TraesCS4D01G212700 chr4A 90.176 1649 79 31 412 2017 99029139 99030747 0.000000e+00 2071.0
6 TraesCS4D01G212700 chr4A 94.617 836 31 2 2088 2910 99030760 99031594 0.000000e+00 1282.0
7 TraesCS4D01G212700 chr4A 95.385 650 17 8 6071 6713 99034895 99035538 0.000000e+00 1022.0
8 TraesCS4D01G212700 chr4A 92.202 436 20 7 6714 7141 99035572 99036001 8.170000e-169 604.0
9 TraesCS4D01G212700 chr4A 87.607 234 7 10 7139 7363 99036141 99036361 1.230000e-62 252.0
10 TraesCS4D01G212700 chr4A 87.234 188 9 8 220 399 99029417 99029597 4.510000e-47 200.0
11 TraesCS4D01G212700 chr4A 87.234 94 10 2 4259 4351 99009724 99009816 1.010000e-18 106.0
12 TraesCS4D01G212700 chr4B 95.982 2389 64 13 2229 4591 450453471 450451089 0.000000e+00 3851.0
13 TraesCS4D01G212700 chr4B 93.023 2107 94 21 4633 6715 450451087 450449010 0.000000e+00 3027.0
14 TraesCS4D01G212700 chr4B 88.641 1611 105 49 461 2017 450455336 450453750 0.000000e+00 1890.0
15 TraesCS4D01G212700 chr4B 91.879 628 29 10 6736 7361 450448933 450448326 0.000000e+00 857.0
16 TraesCS4D01G212700 chr4B 95.714 140 6 0 2088 2227 450453737 450453598 7.430000e-55 226.0
17 TraesCS4D01G212700 chr4B 90.533 169 15 1 11 179 136054877 136055044 9.620000e-54 222.0
18 TraesCS4D01G212700 chr4B 84.699 183 12 15 220 390 450455080 450454902 1.270000e-37 169.0
19 TraesCS4D01G212700 chr4B 90.909 88 8 0 4262 4349 140891343 140891430 1.300000e-22 119.0
20 TraesCS4D01G212700 chr4B 100.000 28 0 0 412 439 450455369 450455342 1.300000e-02 52.8
21 TraesCS4D01G212700 chr3D 83.333 432 41 8 2098 2499 2318963 2318533 3.240000e-98 370.0
22 TraesCS4D01G212700 chr2A 89.820 167 17 0 19 185 17229323 17229157 1.610000e-51 215.0
23 TraesCS4D01G212700 chr2A 89.634 164 17 0 19 182 148158261 148158424 7.490000e-50 209.0
24 TraesCS4D01G212700 chr7A 89.759 166 15 2 11 176 93139748 93139911 2.080000e-50 211.0
25 TraesCS4D01G212700 chr7A 89.634 164 17 0 19 182 77451793 77451956 7.490000e-50 209.0
26 TraesCS4D01G212700 chr1A 88.953 172 18 1 11 182 265443510 265443680 2.080000e-50 211.0
27 TraesCS4D01G212700 chr1A 83.482 224 25 9 1666 1884 307041743 307041527 1.620000e-46 198.0
28 TraesCS4D01G212700 chr1A 93.548 93 5 1 4261 4352 313907359 313907267 3.580000e-28 137.0
29 TraesCS4D01G212700 chr7D 89.634 164 17 0 19 182 555625060 555625223 7.490000e-50 209.0
30 TraesCS4D01G212700 chr2D 89.634 164 17 0 19 182 446532337 446532500 7.490000e-50 209.0
31 TraesCS4D01G212700 chr1D 90.323 93 6 2 4261 4352 233793706 233793796 1.300000e-22 119.0
32 TraesCS4D01G212700 chr1D 87.234 94 7 4 4263 4353 101285145 101285236 1.310000e-17 102.0
33 TraesCS4D01G212700 chr1D 85.714 98 10 3 4256 4350 451978967 451978871 4.700000e-17 100.0
34 TraesCS4D01G212700 chr1B 91.667 84 7 0 4266 4349 331129154 331129071 4.670000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G212700 chr4D 365835408 365842770 7362 True 4773.333333 13598 99.019333 1 7363 3 chr4D.!!$R2 7362
1 TraesCS4D01G212700 chr4A 99029139 99036361 7222 False 1516.142857 5182 91.891571 220 7363 7 chr4A.!!$F2 7143
2 TraesCS4D01G212700 chr4B 450448326 450455369 7043 True 1438.971429 3851 92.848286 220 7361 7 chr4B.!!$R1 7141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.036388 ACCACCACCATCATCGTCAC 60.036 55.000 0.00 0.0 0.00 3.67 F
464 465 0.102481 CTCGACGGTCCGGATCAATT 59.898 55.000 16.61 0.0 0.00 2.32 F
2017 2111 0.246635 GCTGCTCGTTGTCTCCCTTA 59.753 55.000 0.00 0.0 0.00 2.69 F
2424 2656 0.106149 AACTCGACGGAAGGCAAAGT 59.894 50.000 0.00 0.0 41.50 2.66 F
2425 2657 0.600255 ACTCGACGGAAGGCAAAGTG 60.600 55.000 0.00 0.0 41.50 3.16 F
2426 2658 0.600255 CTCGACGGAAGGCAAAGTGT 60.600 55.000 0.00 0.0 41.50 3.55 F
4014 4288 1.563924 TGGTATGGTACGCCTCACTT 58.436 50.000 0.00 0.0 35.27 3.16 F
5921 6218 1.139058 GTCGTGCAGGTAATCCATCCT 59.861 52.381 6.26 0.0 35.89 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2034 0.034616 GCAGCTTCTCACCTGACAGT 59.965 55.000 0.93 0.0 0.00 3.55 R
2422 2654 1.968017 CCGCCAAGCACATCACACT 60.968 57.895 0.00 0.0 0.00 3.55 R
3030 3298 2.278332 ACTCAACTGAAGCCTTTCCC 57.722 50.000 0.00 0.0 32.09 3.97 R
4238 4512 1.064003 AACTAGGCACCCACACATCA 58.936 50.000 0.00 0.0 0.00 3.07 R
4245 4519 3.116096 AGATCAGTAACTAGGCACCCA 57.884 47.619 0.00 0.0 0.00 4.51 R
4394 4670 8.994429 TTGTTTATATGCCAAAACTTACATGG 57.006 30.769 0.00 0.0 36.70 3.66 R
5963 6260 1.231958 GGCGGACCACAACGAAATCA 61.232 55.000 0.00 0.0 35.26 2.57 R
6775 7265 1.067354 AGTCGCGTCGGTTTCCTTTAT 60.067 47.619 5.77 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.442632 AGATTTATGATTCTCATTTTGCTCGA 57.557 30.769 0.00 0.00 38.26 4.04
33 34 8.896744 AGATTTATGATTCTCATTTTGCTCGAA 58.103 29.630 0.00 0.00 38.26 3.71
34 35 9.507280 GATTTATGATTCTCATTTTGCTCGAAA 57.493 29.630 0.00 0.00 38.26 3.46
35 36 8.673626 TTTATGATTCTCATTTTGCTCGAAAC 57.326 30.769 0.00 0.00 38.26 2.78
36 37 5.947228 TGATTCTCATTTTGCTCGAAACT 57.053 34.783 0.00 0.00 0.00 2.66
37 38 7.615582 ATGATTCTCATTTTGCTCGAAACTA 57.384 32.000 0.00 0.00 32.13 2.24
38 39 7.433708 TGATTCTCATTTTGCTCGAAACTAA 57.566 32.000 0.00 0.00 0.00 2.24
39 40 7.298122 TGATTCTCATTTTGCTCGAAACTAAC 58.702 34.615 0.00 0.00 0.00 2.34
40 41 6.861065 TTCTCATTTTGCTCGAAACTAACT 57.139 33.333 0.00 0.00 0.00 2.24
41 42 6.861065 TCTCATTTTGCTCGAAACTAACTT 57.139 33.333 0.00 0.00 0.00 2.66
42 43 6.658831 TCTCATTTTGCTCGAAACTAACTTG 58.341 36.000 0.00 0.00 0.00 3.16
43 44 6.481976 TCTCATTTTGCTCGAAACTAACTTGA 59.518 34.615 0.00 0.00 0.00 3.02
44 45 6.658831 TCATTTTGCTCGAAACTAACTTGAG 58.341 36.000 0.00 0.00 0.00 3.02
45 46 6.481976 TCATTTTGCTCGAAACTAACTTGAGA 59.518 34.615 0.00 0.00 0.00 3.27
46 47 6.861065 TTTTGCTCGAAACTAACTTGAGAT 57.139 33.333 0.00 0.00 0.00 2.75
47 48 6.467723 TTTGCTCGAAACTAACTTGAGATC 57.532 37.500 0.00 0.00 0.00 2.75
48 49 5.134202 TGCTCGAAACTAACTTGAGATCA 57.866 39.130 0.00 0.00 0.00 2.92
49 50 5.538118 TGCTCGAAACTAACTTGAGATCAA 58.462 37.500 0.00 0.00 0.00 2.57
50 51 5.405571 TGCTCGAAACTAACTTGAGATCAAC 59.594 40.000 0.00 0.00 0.00 3.18
51 52 5.635700 GCTCGAAACTAACTTGAGATCAACT 59.364 40.000 0.00 0.00 0.00 3.16
52 53 6.183360 GCTCGAAACTAACTTGAGATCAACTC 60.183 42.308 0.00 0.00 45.11 3.01
67 68 6.375377 AGATCAACTCGAGATCGTTATAAGC 58.625 40.000 21.68 0.00 45.05 3.09
68 69 5.752892 TCAACTCGAGATCGTTATAAGCT 57.247 39.130 21.68 0.00 40.80 3.74
69 70 5.511571 TCAACTCGAGATCGTTATAAGCTG 58.488 41.667 21.68 0.00 40.80 4.24
70 71 5.296035 TCAACTCGAGATCGTTATAAGCTGA 59.704 40.000 21.68 0.00 40.80 4.26
71 72 5.351233 ACTCGAGATCGTTATAAGCTGAG 57.649 43.478 21.68 0.00 40.80 3.35
72 73 4.148563 TCGAGATCGTTATAAGCTGAGC 57.851 45.455 0.00 0.00 40.80 4.26
73 74 3.564225 TCGAGATCGTTATAAGCTGAGCA 59.436 43.478 7.39 0.00 40.80 4.26
74 75 3.666334 CGAGATCGTTATAAGCTGAGCAC 59.334 47.826 7.39 0.00 34.11 4.40
75 76 3.633235 AGATCGTTATAAGCTGAGCACG 58.367 45.455 7.39 7.63 0.00 5.34
76 77 3.315470 AGATCGTTATAAGCTGAGCACGA 59.685 43.478 17.15 17.15 36.67 4.35
77 78 3.066369 TCGTTATAAGCTGAGCACGAG 57.934 47.619 12.04 0.00 30.79 4.18
78 79 2.422479 TCGTTATAAGCTGAGCACGAGT 59.578 45.455 12.04 0.00 30.79 4.18
79 80 2.784380 CGTTATAAGCTGAGCACGAGTC 59.216 50.000 7.39 0.00 0.00 3.36
80 81 3.730963 CGTTATAAGCTGAGCACGAGTCA 60.731 47.826 7.39 0.00 0.00 3.41
81 82 4.363999 GTTATAAGCTGAGCACGAGTCAT 58.636 43.478 7.39 0.00 0.00 3.06
82 83 2.284263 TAAGCTGAGCACGAGTCATG 57.716 50.000 7.39 0.00 0.00 3.07
83 84 0.319728 AAGCTGAGCACGAGTCATGT 59.680 50.000 7.39 0.00 0.00 3.21
84 85 0.319728 AGCTGAGCACGAGTCATGTT 59.680 50.000 7.39 0.00 0.00 2.71
85 86 1.151668 GCTGAGCACGAGTCATGTTT 58.848 50.000 0.00 0.00 0.00 2.83
86 87 1.532868 GCTGAGCACGAGTCATGTTTT 59.467 47.619 0.00 0.00 0.00 2.43
87 88 2.736721 GCTGAGCACGAGTCATGTTTTA 59.263 45.455 0.00 0.00 0.00 1.52
88 89 3.423645 GCTGAGCACGAGTCATGTTTTAC 60.424 47.826 0.00 0.00 0.00 2.01
89 90 3.723260 TGAGCACGAGTCATGTTTTACA 58.277 40.909 0.00 0.00 0.00 2.41
90 91 3.740832 TGAGCACGAGTCATGTTTTACAG 59.259 43.478 0.00 0.00 0.00 2.74
91 92 2.480419 AGCACGAGTCATGTTTTACAGC 59.520 45.455 0.00 0.00 0.00 4.40
92 93 2.480419 GCACGAGTCATGTTTTACAGCT 59.520 45.455 0.00 0.00 0.00 4.24
93 94 3.423645 GCACGAGTCATGTTTTACAGCTC 60.424 47.826 0.00 0.00 0.00 4.09
94 95 2.987149 ACGAGTCATGTTTTACAGCTCG 59.013 45.455 19.62 19.62 45.32 5.03
95 96 2.345641 CGAGTCATGTTTTACAGCTCGG 59.654 50.000 16.31 0.00 41.02 4.63
96 97 2.076863 AGTCATGTTTTACAGCTCGGC 58.923 47.619 0.00 0.00 0.00 5.54
97 98 2.076863 GTCATGTTTTACAGCTCGGCT 58.923 47.619 0.00 0.00 40.77 5.52
98 99 2.484264 GTCATGTTTTACAGCTCGGCTT 59.516 45.455 0.00 0.00 36.40 4.35
99 100 3.058224 GTCATGTTTTACAGCTCGGCTTT 60.058 43.478 0.00 0.00 36.40 3.51
100 101 3.058293 TCATGTTTTACAGCTCGGCTTTG 60.058 43.478 0.00 0.00 36.40 2.77
101 102 2.566913 TGTTTTACAGCTCGGCTTTGA 58.433 42.857 0.00 0.00 36.40 2.69
102 103 2.548057 TGTTTTACAGCTCGGCTTTGAG 59.452 45.455 0.00 0.00 36.40 3.02
109 110 3.223661 CTCGGCTTTGAGCTTCACT 57.776 52.632 0.00 0.00 41.99 3.41
110 111 1.074752 CTCGGCTTTGAGCTTCACTC 58.925 55.000 0.00 0.00 46.45 3.51
125 126 3.773974 CTCGGTTTGAGCTCGCTC 58.226 61.111 9.64 11.83 43.01 5.03
126 127 2.126463 TCGGTTTGAGCTCGCTCG 60.126 61.111 9.64 10.35 45.48 5.03
127 128 2.126463 CGGTTTGAGCTCGCTCGA 60.126 61.111 9.64 9.43 45.48 4.04
128 129 1.733041 CGGTTTGAGCTCGCTCGAA 60.733 57.895 15.72 15.72 45.48 3.71
129 130 1.078759 CGGTTTGAGCTCGCTCGAAT 61.079 55.000 20.94 0.00 45.11 3.34
130 131 1.079503 GGTTTGAGCTCGCTCGAATT 58.920 50.000 20.94 0.00 45.11 2.17
131 132 1.464997 GGTTTGAGCTCGCTCGAATTT 59.535 47.619 20.94 0.00 45.11 1.82
132 133 2.095718 GGTTTGAGCTCGCTCGAATTTT 60.096 45.455 20.94 0.00 45.11 1.82
133 134 3.555518 GTTTGAGCTCGCTCGAATTTTT 58.444 40.909 20.94 0.00 45.11 1.94
134 135 4.378046 GGTTTGAGCTCGCTCGAATTTTTA 60.378 41.667 20.94 0.00 45.11 1.52
135 136 5.324697 GTTTGAGCTCGCTCGAATTTTTAT 58.675 37.500 20.94 0.00 45.11 1.40
136 137 6.456449 GGTTTGAGCTCGCTCGAATTTTTATA 60.456 38.462 20.94 0.00 45.11 0.98
137 138 6.844696 TTGAGCTCGCTCGAATTTTTATAT 57.155 33.333 9.64 0.00 45.48 0.86
138 139 6.215477 TGAGCTCGCTCGAATTTTTATATG 57.785 37.500 9.64 0.00 45.48 1.78
139 140 5.983118 TGAGCTCGCTCGAATTTTTATATGA 59.017 36.000 9.64 0.00 45.48 2.15
140 141 6.144563 TGAGCTCGCTCGAATTTTTATATGAG 59.855 38.462 9.64 0.00 45.48 2.90
141 142 5.986135 AGCTCGCTCGAATTTTTATATGAGT 59.014 36.000 0.00 0.00 0.00 3.41
142 143 6.480320 AGCTCGCTCGAATTTTTATATGAGTT 59.520 34.615 0.00 0.00 0.00 3.01
143 144 6.571520 GCTCGCTCGAATTTTTATATGAGTTG 59.428 38.462 0.00 0.00 0.00 3.16
144 145 7.516785 GCTCGCTCGAATTTTTATATGAGTTGA 60.517 37.037 0.00 0.00 0.00 3.18
145 146 7.841486 TCGCTCGAATTTTTATATGAGTTGAG 58.159 34.615 0.00 0.00 0.00 3.02
146 147 6.571520 CGCTCGAATTTTTATATGAGTTGAGC 59.428 38.462 0.00 0.00 40.25 4.26
147 148 7.517417 CGCTCGAATTTTTATATGAGTTGAGCT 60.517 37.037 13.57 0.00 41.18 4.09
148 149 8.765219 GCTCGAATTTTTATATGAGTTGAGCTA 58.235 33.333 10.51 0.00 40.43 3.32
151 152 9.374960 CGAATTTTTATATGAGTTGAGCTAAGC 57.625 33.333 0.00 0.00 0.00 3.09
152 153 9.670719 GAATTTTTATATGAGTTGAGCTAAGCC 57.329 33.333 0.00 0.00 0.00 4.35
153 154 8.752005 ATTTTTATATGAGTTGAGCTAAGCCA 57.248 30.769 0.00 0.00 0.00 4.75
154 155 8.574251 TTTTTATATGAGTTGAGCTAAGCCAA 57.426 30.769 0.00 0.00 0.00 4.52
155 156 7.553881 TTTATATGAGTTGAGCTAAGCCAAC 57.446 36.000 7.71 7.71 38.78 3.77
156 157 3.710209 ATGAGTTGAGCTAAGCCAACT 57.290 42.857 16.08 16.08 45.33 3.16
157 158 3.492102 TGAGTTGAGCTAAGCCAACTT 57.508 42.857 16.92 4.50 43.97 2.66
158 159 3.403038 TGAGTTGAGCTAAGCCAACTTC 58.597 45.455 16.92 11.72 43.97 3.01
159 160 3.181455 TGAGTTGAGCTAAGCCAACTTCA 60.181 43.478 16.92 13.52 43.97 3.02
160 161 3.815401 GAGTTGAGCTAAGCCAACTTCAA 59.185 43.478 16.92 2.86 43.97 2.69
161 162 3.565902 AGTTGAGCTAAGCCAACTTCAAC 59.434 43.478 11.63 10.36 42.61 3.18
162 163 3.492102 TGAGCTAAGCCAACTTCAACT 57.508 42.857 0.00 0.00 37.33 3.16
163 164 3.403038 TGAGCTAAGCCAACTTCAACTC 58.597 45.455 0.00 0.00 37.33 3.01
164 165 2.413453 GAGCTAAGCCAACTTCAACTCG 59.587 50.000 0.00 0.00 37.33 4.18
165 166 2.143925 GCTAAGCCAACTTCAACTCGT 58.856 47.619 0.00 0.00 37.33 4.18
166 167 2.548480 GCTAAGCCAACTTCAACTCGTT 59.452 45.455 0.00 0.00 37.33 3.85
167 168 3.364068 GCTAAGCCAACTTCAACTCGTTC 60.364 47.826 0.00 0.00 37.33 3.95
168 169 1.217882 AGCCAACTTCAACTCGTTCG 58.782 50.000 0.00 0.00 0.00 3.95
169 170 1.202486 AGCCAACTTCAACTCGTTCGA 60.202 47.619 0.00 0.00 0.00 3.71
170 171 1.595794 GCCAACTTCAACTCGTTCGAA 59.404 47.619 0.00 0.00 0.00 3.71
171 172 2.599142 GCCAACTTCAACTCGTTCGAAC 60.599 50.000 18.47 18.47 0.00 3.95
172 173 2.864343 CCAACTTCAACTCGTTCGAACT 59.136 45.455 24.80 4.68 0.00 3.01
173 174 3.060473 CCAACTTCAACTCGTTCGAACTC 60.060 47.826 24.80 0.98 0.00 3.01
174 175 2.382519 ACTTCAACTCGTTCGAACTCG 58.617 47.619 24.80 17.24 41.45 4.18
193 194 4.675029 CTCGTTCGCGGGGGTGTT 62.675 66.667 6.13 0.00 41.70 3.32
194 195 4.668118 TCGTTCGCGGGGGTGTTC 62.668 66.667 6.13 0.00 41.70 3.18
202 203 4.754667 GGGGGTGTTCGGCGAGAC 62.755 72.222 10.46 11.07 0.00 3.36
204 205 4.353437 GGGTGTTCGGCGAGACGT 62.353 66.667 10.46 0.00 34.94 4.34
205 206 3.103911 GGTGTTCGGCGAGACGTG 61.104 66.667 10.46 0.00 34.94 4.49
206 207 3.764049 GTGTTCGGCGAGACGTGC 61.764 66.667 10.46 0.00 34.94 5.34
215 216 3.414700 GAGACGTGCGGCACCAAG 61.415 66.667 26.00 15.25 0.00 3.61
216 217 4.235762 AGACGTGCGGCACCAAGT 62.236 61.111 26.00 18.31 0.00 3.16
217 218 3.712881 GACGTGCGGCACCAAGTC 61.713 66.667 26.00 22.05 37.14 3.01
220 221 3.660111 GTGCGGCACCAAGTCCAC 61.660 66.667 22.19 0.00 0.00 4.02
221 222 4.947147 TGCGGCACCAAGTCCACC 62.947 66.667 0.00 0.00 0.00 4.61
222 223 4.947147 GCGGCACCAAGTCCACCA 62.947 66.667 0.00 0.00 0.00 4.17
223 224 2.978010 CGGCACCAAGTCCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
224 225 2.597510 GGCACCAAGTCCACCACC 60.598 66.667 0.00 0.00 0.00 4.61
225 226 2.194597 GCACCAAGTCCACCACCA 59.805 61.111 0.00 0.00 0.00 4.17
226 227 2.193536 GCACCAAGTCCACCACCAC 61.194 63.158 0.00 0.00 0.00 4.16
227 228 1.528309 CACCAAGTCCACCACCACC 60.528 63.158 0.00 0.00 0.00 4.61
228 229 2.004120 ACCAAGTCCACCACCACCA 61.004 57.895 0.00 0.00 0.00 4.17
229 230 1.528309 CCAAGTCCACCACCACCAC 60.528 63.158 0.00 0.00 0.00 4.16
230 231 1.528309 CAAGTCCACCACCACCACC 60.528 63.158 0.00 0.00 0.00 4.61
231 232 2.004120 AAGTCCACCACCACCACCA 61.004 57.895 0.00 0.00 0.00 4.17
232 233 2.203294 GTCCACCACCACCACCAC 60.203 66.667 0.00 0.00 0.00 4.16
233 234 3.494254 TCCACCACCACCACCACC 61.494 66.667 0.00 0.00 0.00 4.61
234 235 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
235 236 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
236 237 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
237 238 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
238 239 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
239 240 1.603455 CACCACCACCACCACCATC 60.603 63.158 0.00 0.00 0.00 3.51
240 241 2.081787 ACCACCACCACCACCATCA 61.082 57.895 0.00 0.00 0.00 3.07
241 242 1.383799 CCACCACCACCACCATCAT 59.616 57.895 0.00 0.00 0.00 2.45
242 243 0.680921 CCACCACCACCACCATCATC 60.681 60.000 0.00 0.00 0.00 2.92
243 244 1.026182 CACCACCACCACCATCATCG 61.026 60.000 0.00 0.00 0.00 3.84
244 245 1.299648 CCACCACCACCATCATCGT 59.700 57.895 0.00 0.00 0.00 3.73
245 246 0.744414 CCACCACCACCATCATCGTC 60.744 60.000 0.00 0.00 0.00 4.20
246 247 0.036483 CACCACCACCATCATCGTCA 60.036 55.000 0.00 0.00 0.00 4.35
247 248 0.036388 ACCACCACCATCATCGTCAC 60.036 55.000 0.00 0.00 0.00 3.67
248 249 0.744414 CCACCACCATCATCGTCACC 60.744 60.000 0.00 0.00 0.00 4.02
249 250 1.083806 CACCACCATCATCGTCACCG 61.084 60.000 0.00 0.00 0.00 4.94
250 251 2.173669 CCACCATCATCGTCACCGC 61.174 63.158 0.00 0.00 0.00 5.68
251 252 2.173669 CACCATCATCGTCACCGCC 61.174 63.158 0.00 0.00 0.00 6.13
252 253 2.186644 CCATCATCGTCACCGCCA 59.813 61.111 0.00 0.00 0.00 5.69
253 254 2.173669 CCATCATCGTCACCGCCAC 61.174 63.158 0.00 0.00 0.00 5.01
254 255 2.173669 CATCATCGTCACCGCCACC 61.174 63.158 0.00 0.00 0.00 4.61
255 256 2.655073 ATCATCGTCACCGCCACCA 61.655 57.895 0.00 0.00 0.00 4.17
256 257 2.852495 ATCATCGTCACCGCCACCAC 62.852 60.000 0.00 0.00 0.00 4.16
257 258 3.621805 ATCGTCACCGCCACCACA 61.622 61.111 0.00 0.00 0.00 4.17
258 259 3.589654 ATCGTCACCGCCACCACAG 62.590 63.158 0.00 0.00 0.00 3.66
260 261 4.927782 GTCACCGCCACCACAGCA 62.928 66.667 0.00 0.00 0.00 4.41
261 262 4.182433 TCACCGCCACCACAGCAA 62.182 61.111 0.00 0.00 0.00 3.91
262 263 3.964875 CACCGCCACCACAGCAAC 61.965 66.667 0.00 0.00 0.00 4.17
266 267 2.837291 GCCACCACAGCAACCCAA 60.837 61.111 0.00 0.00 0.00 4.12
267 268 3.128375 CCACCACAGCAACCCAAC 58.872 61.111 0.00 0.00 0.00 3.77
268 269 1.756172 CCACCACAGCAACCCAACA 60.756 57.895 0.00 0.00 0.00 3.33
269 270 1.326213 CCACCACAGCAACCCAACAA 61.326 55.000 0.00 0.00 0.00 2.83
270 271 0.534412 CACCACAGCAACCCAACAAA 59.466 50.000 0.00 0.00 0.00 2.83
271 272 0.534873 ACCACAGCAACCCAACAAAC 59.465 50.000 0.00 0.00 0.00 2.93
272 273 0.179086 CCACAGCAACCCAACAAACC 60.179 55.000 0.00 0.00 0.00 3.27
273 274 0.527385 CACAGCAACCCAACAAACCG 60.527 55.000 0.00 0.00 0.00 4.44
274 275 1.591327 CAGCAACCCAACAAACCGC 60.591 57.895 0.00 0.00 0.00 5.68
275 276 2.656973 GCAACCCAACAAACCGCG 60.657 61.111 0.00 0.00 0.00 6.46
276 277 2.026879 CAACCCAACAAACCGCGG 59.973 61.111 26.86 26.86 0.00 6.46
277 278 2.124236 AACCCAACAAACCGCGGA 60.124 55.556 35.90 0.00 0.00 5.54
278 279 2.190841 AACCCAACAAACCGCGGAG 61.191 57.895 35.90 22.89 0.00 4.63
279 280 2.281208 CCCAACAAACCGCGGAGA 60.281 61.111 35.90 0.00 0.00 3.71
280 281 2.325082 CCCAACAAACCGCGGAGAG 61.325 63.158 35.90 22.13 0.00 3.20
299 300 3.458163 CGAGGGGCGGTTGCTCTA 61.458 66.667 0.00 0.00 43.00 2.43
300 301 2.187163 GAGGGGCGGTTGCTCTAC 59.813 66.667 0.00 0.00 43.00 2.59
301 302 2.284699 AGGGGCGGTTGCTCTACT 60.285 61.111 0.00 0.00 43.00 2.57
302 303 2.125106 GGGGCGGTTGCTCTACTG 60.125 66.667 0.00 0.00 43.00 2.74
305 306 3.479370 GCGGTTGCTCTACTGCTG 58.521 61.111 7.78 0.00 45.03 4.41
306 307 2.744768 GCGGTTGCTCTACTGCTGC 61.745 63.158 7.78 0.00 45.03 5.25
307 308 1.079543 CGGTTGCTCTACTGCTGCT 60.080 57.895 0.00 0.00 0.00 4.24
308 309 1.080995 CGGTTGCTCTACTGCTGCTC 61.081 60.000 0.00 0.00 0.00 4.26
309 310 0.742635 GGTTGCTCTACTGCTGCTCC 60.743 60.000 0.00 0.00 0.00 4.70
310 311 0.742635 GTTGCTCTACTGCTGCTCCC 60.743 60.000 0.00 0.00 0.00 4.30
311 312 0.906756 TTGCTCTACTGCTGCTCCCT 60.907 55.000 0.00 0.00 0.00 4.20
312 313 1.326213 TGCTCTACTGCTGCTCCCTC 61.326 60.000 0.00 0.00 0.00 4.30
313 314 2.026945 GCTCTACTGCTGCTCCCTCC 62.027 65.000 0.00 0.00 0.00 4.30
314 315 0.396974 CTCTACTGCTGCTCCCTCCT 60.397 60.000 0.00 0.00 0.00 3.69
315 316 0.927029 TCTACTGCTGCTCCCTCCTA 59.073 55.000 0.00 0.00 0.00 2.94
316 317 1.036707 CTACTGCTGCTCCCTCCTAC 58.963 60.000 0.00 0.00 0.00 3.18
317 318 0.397254 TACTGCTGCTCCCTCCTACC 60.397 60.000 0.00 0.00 0.00 3.18
318 319 2.759973 TGCTGCTCCCTCCTACCG 60.760 66.667 0.00 0.00 0.00 4.02
319 320 4.228567 GCTGCTCCCTCCTACCGC 62.229 72.222 0.00 0.00 0.00 5.68
320 321 2.443016 CTGCTCCCTCCTACCGCT 60.443 66.667 0.00 0.00 0.00 5.52
321 322 2.759973 TGCTCCCTCCTACCGCTG 60.760 66.667 0.00 0.00 0.00 5.18
322 323 2.760385 GCTCCCTCCTACCGCTGT 60.760 66.667 0.00 0.00 0.00 4.40
323 324 1.455217 GCTCCCTCCTACCGCTGTA 60.455 63.158 0.00 0.00 0.00 2.74
324 325 1.736365 GCTCCCTCCTACCGCTGTAC 61.736 65.000 0.00 0.00 0.00 2.90
325 326 1.076485 TCCCTCCTACCGCTGTACC 60.076 63.158 0.00 0.00 0.00 3.34
326 327 2.487532 CCCTCCTACCGCTGTACCG 61.488 68.421 0.00 0.00 0.00 4.02
369 370 4.162690 CGGCCCCTTCTAGCGCTT 62.163 66.667 18.68 0.00 0.00 4.68
370 371 2.203084 GGCCCCTTCTAGCGCTTC 60.203 66.667 18.68 0.00 0.00 3.86
371 372 2.586357 GCCCCTTCTAGCGCTTCG 60.586 66.667 18.68 7.78 0.00 3.79
388 389 2.803670 GCTTCGCGTCGTGTAGCA 60.804 61.111 26.22 0.00 31.60 3.49
389 390 2.778997 GCTTCGCGTCGTGTAGCAG 61.779 63.158 26.22 11.14 31.60 4.24
390 391 2.126618 TTCGCGTCGTGTAGCAGG 60.127 61.111 5.77 0.00 0.00 4.85
391 392 2.523184 CTTCGCGTCGTGTAGCAGGA 62.523 60.000 5.77 0.00 0.00 3.86
392 393 2.523184 TTCGCGTCGTGTAGCAGGAG 62.523 60.000 5.77 0.00 0.00 3.69
393 394 2.875485 GCGTCGTGTAGCAGGAGA 59.125 61.111 0.00 0.00 0.00 3.71
394 395 1.226435 GCGTCGTGTAGCAGGAGAG 60.226 63.158 0.00 0.00 0.00 3.20
395 396 1.924320 GCGTCGTGTAGCAGGAGAGT 61.924 60.000 0.00 0.00 0.00 3.24
396 397 0.179187 CGTCGTGTAGCAGGAGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
397 398 0.456995 GTCGTGTAGCAGGAGAGTGC 60.457 60.000 0.00 0.00 44.35 4.40
404 405 1.153469 GCAGGAGAGTGCTACCAGC 60.153 63.158 0.00 0.00 42.82 4.85
405 406 1.140589 CAGGAGAGTGCTACCAGCG 59.859 63.158 0.00 0.00 46.26 5.18
406 407 2.055042 AGGAGAGTGCTACCAGCGG 61.055 63.158 0.00 0.00 46.26 5.52
407 408 2.496817 GAGAGTGCTACCAGCGGG 59.503 66.667 0.00 0.00 46.26 6.13
464 465 0.102481 CTCGACGGTCCGGATCAATT 59.898 55.000 16.61 0.00 0.00 2.32
475 476 0.373716 GGATCAATTCCGTCACACGC 59.626 55.000 0.00 0.00 40.91 5.34
510 511 1.420430 TCTCTGGAAACCGGAACACT 58.580 50.000 9.46 0.00 38.58 3.55
512 513 1.344763 CTCTGGAAACCGGAACACTCT 59.655 52.381 9.46 0.00 38.58 3.24
513 514 1.343465 TCTGGAAACCGGAACACTCTC 59.657 52.381 9.46 0.00 35.75 3.20
514 515 1.070134 CTGGAAACCGGAACACTCTCA 59.930 52.381 9.46 0.00 29.82 3.27
515 516 1.697432 TGGAAACCGGAACACTCTCAT 59.303 47.619 9.46 0.00 0.00 2.90
516 517 2.105821 TGGAAACCGGAACACTCTCATT 59.894 45.455 9.46 0.00 0.00 2.57
517 518 3.146847 GGAAACCGGAACACTCTCATTT 58.853 45.455 9.46 0.00 0.00 2.32
518 519 3.058224 GGAAACCGGAACACTCTCATTTG 60.058 47.826 9.46 0.00 0.00 2.32
519 520 2.185004 ACCGGAACACTCTCATTTGG 57.815 50.000 9.46 0.00 0.00 3.28
725 757 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
726 758 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
727 759 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
728 760 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
729 761 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
730 762 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
805 841 0.396974 CTCTACTGCTGCTCCCTCCT 60.397 60.000 0.00 0.00 0.00 3.69
806 842 0.927029 TCTACTGCTGCTCCCTCCTA 59.073 55.000 0.00 0.00 0.00 2.94
809 845 2.759973 TGCTGCTCCCTCCTACCG 60.760 66.667 0.00 0.00 0.00 4.02
810 846 4.228567 GCTGCTCCCTCCTACCGC 62.229 72.222 0.00 0.00 0.00 5.68
811 847 2.443016 CTGCTCCCTCCTACCGCT 60.443 66.667 0.00 0.00 0.00 5.52
812 848 2.759973 TGCTCCCTCCTACCGCTG 60.760 66.667 0.00 0.00 0.00 5.18
813 849 2.760385 GCTCCCTCCTACCGCTGT 60.760 66.667 0.00 0.00 0.00 4.40
814 850 1.455217 GCTCCCTCCTACCGCTGTA 60.455 63.158 0.00 0.00 0.00 2.74
815 851 1.736365 GCTCCCTCCTACCGCTGTAC 61.736 65.000 0.00 0.00 0.00 2.90
816 852 1.076485 TCCCTCCTACCGCTGTACC 60.076 63.158 0.00 0.00 0.00 3.34
817 853 2.487532 CCCTCCTACCGCTGTACCG 61.488 68.421 0.00 0.00 0.00 4.02
896 948 1.140589 CAGGAGAGTGCTACCAGCG 59.859 63.158 0.00 0.00 46.26 5.18
897 949 2.055042 AGGAGAGTGCTACCAGCGG 61.055 63.158 0.00 0.00 46.26 5.52
898 950 2.496817 GAGAGTGCTACCAGCGGG 59.503 66.667 0.00 0.00 46.26 6.13
915 967 4.388499 GTCGCTCCGCTTTCCCCA 62.388 66.667 0.00 0.00 0.00 4.96
924 976 2.124942 CTTTCCCCAGCCGCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
933 1002 2.354203 CCCAGCCGCTCTCCTATTATTC 60.354 54.545 0.00 0.00 0.00 1.75
986 1068 3.113322 CGTTCGCTTTTGATCGATCCTA 58.887 45.455 22.31 8.03 33.95 2.94
1056 1138 3.648982 CACGTCGCCAAGCAGCAA 61.649 61.111 0.00 0.00 0.00 3.91
1072 1154 2.063774 CAACAGGTACGGGTTCCCT 58.936 57.895 6.31 0.00 0.00 4.20
1129 1211 3.872728 GTCGCCGGAATTTCGCCC 61.873 66.667 5.05 0.00 0.00 6.13
1134 1216 3.098555 CGGAATTTCGCCCGGAAG 58.901 61.111 0.73 0.00 41.89 3.46
1135 1217 1.743995 CGGAATTTCGCCCGGAAGT 60.744 57.895 0.73 0.00 41.89 3.01
1136 1218 0.460635 CGGAATTTCGCCCGGAAGTA 60.461 55.000 0.73 0.00 41.89 2.24
1137 1219 1.296727 GGAATTTCGCCCGGAAGTAG 58.703 55.000 0.73 0.00 35.70 2.57
1138 1220 1.134610 GGAATTTCGCCCGGAAGTAGA 60.135 52.381 0.73 0.00 35.70 2.59
1139 1221 2.624636 GAATTTCGCCCGGAAGTAGAA 58.375 47.619 0.73 0.00 35.70 2.10
1140 1222 2.773993 ATTTCGCCCGGAAGTAGAAA 57.226 45.000 0.73 7.59 35.70 2.52
1141 1223 2.773993 TTTCGCCCGGAAGTAGAAAT 57.226 45.000 0.73 0.00 35.70 2.17
1142 1224 3.891422 TTTCGCCCGGAAGTAGAAATA 57.109 42.857 0.73 0.00 35.70 1.40
1143 1225 3.447918 TTCGCCCGGAAGTAGAAATAG 57.552 47.619 0.73 0.00 0.00 1.73
1172 1256 4.481112 CGGCAATTGCTCCGCCAC 62.481 66.667 28.42 10.16 46.60 5.01
1201 1285 6.174720 TCCACACAGAGTTAGTTTGAGAAT 57.825 37.500 0.00 0.00 0.00 2.40
1277 1361 1.211457 CATTGGAAGGGAGGGAGTGAG 59.789 57.143 0.00 0.00 0.00 3.51
1363 1447 2.922740 TGGATACCCACTTATTCGGC 57.077 50.000 0.00 0.00 37.58 5.54
1437 1527 1.670967 GCCATGCTTCTTTGCCTGTTC 60.671 52.381 0.00 0.00 0.00 3.18
1440 1530 1.032014 TGCTTCTTTGCCTGTTCCAC 58.968 50.000 0.00 0.00 0.00 4.02
1591 1681 3.064545 CCACAAGAGCAGCTAAAGTATGC 59.935 47.826 0.00 0.00 40.29 3.14
1769 1862 2.329267 TCTCAGCTTTGGGTTCTCTCA 58.671 47.619 0.00 0.00 0.00 3.27
1822 1916 6.152379 CAGAAGGAACAGGAAAATTAACTGC 58.848 40.000 4.43 0.00 35.70 4.40
1840 1934 1.133823 TGCTCACAACCACATGACCTT 60.134 47.619 0.00 0.00 0.00 3.50
1851 1945 2.233566 ATGACCTTGCCTCCCTGCA 61.234 57.895 0.00 0.00 40.07 4.41
1902 1996 4.451150 ATCGCCGCCACACGTGAT 62.451 61.111 25.01 3.37 41.42 3.06
1954 2048 1.367471 CGCCACTGTCAGGTGAGAA 59.633 57.895 4.53 0.00 38.96 2.87
1964 2058 1.302351 AGGTGAGAAGCTGCTGCAC 60.302 57.895 18.42 14.80 42.74 4.57
2007 2101 3.490759 CGCCAATCGCTGCTCGTT 61.491 61.111 0.00 0.00 39.67 3.85
2017 2111 0.246635 GCTGCTCGTTGTCTCCCTTA 59.753 55.000 0.00 0.00 0.00 2.69
2018 2112 1.737363 GCTGCTCGTTGTCTCCCTTAG 60.737 57.143 0.00 0.00 0.00 2.18
2021 2115 1.737363 GCTCGTTGTCTCCCTTAGCAG 60.737 57.143 0.00 0.00 0.00 4.24
2022 2116 1.546476 CTCGTTGTCTCCCTTAGCAGT 59.454 52.381 0.00 0.00 0.00 4.40
2024 2118 2.753452 TCGTTGTCTCCCTTAGCAGTAG 59.247 50.000 0.00 0.00 0.00 2.57
2038 2132 3.011949 GCAGTAGCTGATCACTAGAGC 57.988 52.381 0.00 0.00 37.91 4.09
2039 2133 2.622942 GCAGTAGCTGATCACTAGAGCT 59.377 50.000 10.79 10.79 45.12 4.09
2040 2134 3.304659 GCAGTAGCTGATCACTAGAGCTC 60.305 52.174 5.27 5.27 42.16 4.09
2041 2135 3.253188 CAGTAGCTGATCACTAGAGCTCC 59.747 52.174 10.93 0.00 42.16 4.70
2042 2136 2.754012 AGCTGATCACTAGAGCTCCT 57.246 50.000 10.93 0.10 38.78 3.69
2043 2137 3.874383 AGCTGATCACTAGAGCTCCTA 57.126 47.619 10.93 1.41 38.78 2.94
2044 2138 4.177537 AGCTGATCACTAGAGCTCCTAA 57.822 45.455 10.93 0.00 38.78 2.69
2045 2139 4.144297 AGCTGATCACTAGAGCTCCTAAG 58.856 47.826 10.93 8.43 38.78 2.18
2046 2140 3.888930 GCTGATCACTAGAGCTCCTAAGT 59.111 47.826 10.93 9.11 0.00 2.24
2047 2141 5.067273 GCTGATCACTAGAGCTCCTAAGTA 58.933 45.833 10.93 0.00 0.00 2.24
2048 2142 5.533154 GCTGATCACTAGAGCTCCTAAGTAA 59.467 44.000 10.93 0.00 0.00 2.24
2049 2143 6.208599 GCTGATCACTAGAGCTCCTAAGTAAT 59.791 42.308 10.93 3.42 0.00 1.89
2050 2144 7.574967 GCTGATCACTAGAGCTCCTAAGTAATC 60.575 44.444 10.93 12.86 0.00 1.75
2051 2145 7.290813 TGATCACTAGAGCTCCTAAGTAATCA 58.709 38.462 17.37 17.37 0.00 2.57
2052 2146 7.947332 TGATCACTAGAGCTCCTAAGTAATCAT 59.053 37.037 17.37 7.91 0.00 2.45
2053 2147 7.517614 TCACTAGAGCTCCTAAGTAATCATG 57.482 40.000 10.93 0.00 0.00 3.07
2054 2148 7.290813 TCACTAGAGCTCCTAAGTAATCATGA 58.709 38.462 10.93 0.00 0.00 3.07
2055 2149 7.780271 TCACTAGAGCTCCTAAGTAATCATGAA 59.220 37.037 10.93 0.00 0.00 2.57
2056 2150 7.865385 CACTAGAGCTCCTAAGTAATCATGAAC 59.135 40.741 10.93 0.00 0.00 3.18
2057 2151 7.782644 ACTAGAGCTCCTAAGTAATCATGAACT 59.217 37.037 10.93 0.00 0.00 3.01
2058 2152 7.430760 AGAGCTCCTAAGTAATCATGAACTT 57.569 36.000 10.93 15.32 39.25 2.66
2059 2153 7.856415 AGAGCTCCTAAGTAATCATGAACTTT 58.144 34.615 16.02 2.05 37.19 2.66
2060 2154 8.982723 AGAGCTCCTAAGTAATCATGAACTTTA 58.017 33.333 16.02 1.11 37.19 1.85
2061 2155 9.255304 GAGCTCCTAAGTAATCATGAACTTTAG 57.745 37.037 16.02 12.81 37.19 1.85
2062 2156 7.713073 AGCTCCTAAGTAATCATGAACTTTAGC 59.287 37.037 16.02 18.91 37.19 3.09
2063 2157 7.495934 GCTCCTAAGTAATCATGAACTTTAGCA 59.504 37.037 21.97 7.91 37.19 3.49
2064 2158 8.718102 TCCTAAGTAATCATGAACTTTAGCAC 57.282 34.615 16.02 0.00 37.19 4.40
2065 2159 8.540388 TCCTAAGTAATCATGAACTTTAGCACT 58.460 33.333 16.02 0.00 37.19 4.40
2066 2160 9.817809 CCTAAGTAATCATGAACTTTAGCACTA 57.182 33.333 16.02 0.00 37.19 2.74
2086 2180 9.816354 AGCACTAAATTTTGTACATTTTGTTCT 57.184 25.926 4.94 0.00 30.32 3.01
2113 2207 2.025605 TGAAGCATGGAATCCAAGAGCT 60.026 45.455 17.61 17.61 40.21 4.09
2143 2237 4.522722 ACTTTAGCACTAGTCTGGTCAC 57.477 45.455 0.00 0.00 0.00 3.67
2211 2305 5.880332 CCACAAAGAGCTTACAGGCTATAAA 59.120 40.000 0.00 0.00 43.20 1.40
2217 2311 9.681062 AAAGAGCTTACAGGCTATAAAATAACA 57.319 29.630 0.00 0.00 43.20 2.41
2227 2446 7.806487 CAGGCTATAAAATAACAGCATCACATG 59.194 37.037 0.00 0.00 35.69 3.21
2302 2521 5.593010 ACTTCAGAGAGAAACAGTGTGTAC 58.407 41.667 0.00 0.00 35.40 2.90
2324 2543 3.074412 GACACGTTCAATCCATGTCCTT 58.926 45.455 0.00 0.00 34.83 3.36
2422 2654 0.942410 CGAACTCGACGGAAGGCAAA 60.942 55.000 0.00 0.00 41.50 3.68
2424 2656 0.106149 AACTCGACGGAAGGCAAAGT 59.894 50.000 0.00 0.00 41.50 2.66
2425 2657 0.600255 ACTCGACGGAAGGCAAAGTG 60.600 55.000 0.00 0.00 41.50 3.16
2426 2658 0.600255 CTCGACGGAAGGCAAAGTGT 60.600 55.000 0.00 0.00 41.50 3.55
3030 3298 8.200364 ACAATCAAAATCTTGGTTTTGTTCTG 57.800 30.769 15.82 13.58 45.04 3.02
3258 3526 2.915604 ACCCTTGAGTGGAATGTCATCT 59.084 45.455 0.00 0.00 0.00 2.90
3268 3536 4.808364 GTGGAATGTCATCTGAAGCTAGAC 59.192 45.833 0.00 0.00 0.00 2.59
3284 3552 6.276832 AGCTAGACGTGGTTTATTCTGTTA 57.723 37.500 0.00 0.00 0.00 2.41
3648 3922 6.823689 GTGATTTCACTCCTTTAGCTTCCATA 59.176 38.462 0.00 0.00 43.25 2.74
4014 4288 1.563924 TGGTATGGTACGCCTCACTT 58.436 50.000 0.00 0.00 35.27 3.16
4045 4319 6.700081 TCAGAATATGTACTTATGTTGACGGC 59.300 38.462 2.26 0.00 0.00 5.68
4067 4341 4.740934 GCTGAGATTCCTGTGGTATGGTAC 60.741 50.000 0.00 0.00 0.00 3.34
4091 4365 5.277345 CGGCCACTTATGCTATAAACAGAAC 60.277 44.000 2.24 0.00 0.00 3.01
4238 4512 3.706086 ACATTGCTTTTGTTCTCAACCCT 59.294 39.130 0.00 0.00 32.93 4.34
4245 4519 3.576078 TTGTTCTCAACCCTGATGTGT 57.424 42.857 0.00 0.00 0.00 3.72
4394 4670 8.989980 ACTTACTGATTAGAAGTAAAACAGTGC 58.010 33.333 0.00 0.00 39.11 4.40
4489 4766 8.451908 AAATATGTCTTCTAATTACCAGGTGC 57.548 34.615 0.76 0.00 0.00 5.01
4690 4970 3.754965 ACCAAATATGCATACGCCTCAT 58.245 40.909 8.99 0.00 37.32 2.90
4708 4988 5.065988 GCCTCATGTACCGTATGTGAAATTT 59.934 40.000 0.00 0.00 0.00 1.82
5016 5296 3.643763 AGAGTCAGACAACAACGATGAC 58.356 45.455 2.66 0.00 40.41 3.06
5190 5470 1.283613 TACGTACGCCTTTTGCACCG 61.284 55.000 16.72 0.00 41.33 4.94
5192 5472 2.592001 TACGCCTTTTGCACCGCA 60.592 55.556 0.00 0.00 41.33 5.69
5242 5522 6.491745 TGTCATCTCTACTGTTCTTCACTCTT 59.508 38.462 0.00 0.00 0.00 2.85
5265 5545 8.935844 TCTTTTATATTGTTGCTGTGTACTCTG 58.064 33.333 0.00 0.00 0.00 3.35
5421 5701 5.574443 GTGCTTTCTCATGGCTGATTTTTAC 59.426 40.000 0.00 0.00 0.00 2.01
5538 5831 9.884465 GAAAGCCATAAAATATGCTGTTAGTAG 57.116 33.333 0.00 0.00 33.59 2.57
5539 5832 7.440523 AGCCATAAAATATGCTGTTAGTAGC 57.559 36.000 0.00 0.00 43.95 3.58
5582 5879 6.016360 TGTGAGTACCCATTTTGTTGAATCAG 60.016 38.462 0.00 0.00 0.00 2.90
5772 6069 8.810652 AATCCACACACAAACAACAAATATAC 57.189 30.769 0.00 0.00 0.00 1.47
5841 6138 2.490328 TTTTAGCAACTGCAGCACAC 57.510 45.000 15.27 0.53 45.16 3.82
5881 6178 3.442977 GCATTTCATCACTCCAGAAGCTT 59.557 43.478 0.00 0.00 0.00 3.74
5921 6218 1.139058 GTCGTGCAGGTAATCCATCCT 59.861 52.381 6.26 0.00 35.89 3.24
5963 6260 0.033011 AGCTCAGTATCTCCGTGGGT 60.033 55.000 0.00 0.00 0.00 4.51
6059 6362 0.973632 TCGTGTTACACCTCATGGCT 59.026 50.000 10.10 0.00 36.63 4.75
6074 6377 7.121168 CACCTCATGGCTAAATTTCTGAAGTAA 59.879 37.037 0.00 0.00 36.63 2.24
6174 6581 8.142994 ACGCATAACTGTCCATTTATAAGAAG 57.857 34.615 0.00 0.00 0.00 2.85
6175 6582 7.985184 ACGCATAACTGTCCATTTATAAGAAGA 59.015 33.333 0.00 0.00 0.00 2.87
6228 6641 4.202441 AGCAATCTTTGTGTGTCTGTCTT 58.798 39.130 0.00 0.00 0.00 3.01
6452 6872 0.528017 TACTTGCTCAGGACTGCTCG 59.472 55.000 0.00 0.00 0.00 5.03
6496 6920 9.896645 TTTATATCTTTCTGTGCAGATTCTTCT 57.103 29.630 2.47 0.00 37.29 2.85
6600 7026 5.846994 CGACACGAATGTATAGAAGAGCTAC 59.153 44.000 0.00 0.00 39.95 3.58
6623 7049 1.548081 TTTGGTCATGGGATGCTGTG 58.452 50.000 0.00 0.00 0.00 3.66
6664 7090 4.008539 GAAAGCGTTCCTGCTGAATTAG 57.991 45.455 0.30 0.00 46.60 1.73
6702 7130 8.066612 TCAGAACAGTGATAGATATTGTCACA 57.933 34.615 14.52 0.00 46.84 3.58
6715 7143 8.682936 AGATATTGTCACAACTCTTGTTTCTT 57.317 30.769 0.00 0.00 43.23 2.52
6716 7144 8.562892 AGATATTGTCACAACTCTTGTTTCTTG 58.437 33.333 0.00 0.00 43.23 3.02
6773 7263 6.293462 GCTATTCTTGTCAAAACCGAAAGAGT 60.293 38.462 0.00 0.00 0.00 3.24
6774 7264 7.095355 GCTATTCTTGTCAAAACCGAAAGAGTA 60.095 37.037 0.00 0.00 0.00 2.59
6775 7265 6.988622 TTCTTGTCAAAACCGAAAGAGTAA 57.011 33.333 0.00 0.00 0.00 2.24
6850 7340 0.391228 GTTGGGCGTTGGTTGGATTT 59.609 50.000 0.00 0.00 0.00 2.17
6856 7346 2.799978 GGCGTTGGTTGGATTTTTCTTG 59.200 45.455 0.00 0.00 0.00 3.02
6870 7360 7.093640 TGGATTTTTCTTGGATCCATCTTTCTG 60.094 37.037 17.06 0.66 43.20 3.02
6884 7374 5.936372 CCATCTTTCTGTTCAAGTCTGATGA 59.064 40.000 0.00 0.00 33.17 2.92
6885 7375 6.429078 CCATCTTTCTGTTCAAGTCTGATGAA 59.571 38.462 0.00 0.00 33.17 2.57
6956 7446 1.070309 GCTGCAACAGAGACAGTTTCG 60.070 52.381 0.00 0.00 32.44 3.46
7000 7490 3.373001 CCTCCCTCCCATGCTTTTTATCA 60.373 47.826 0.00 0.00 0.00 2.15
7131 7628 1.604438 CCACCGTTTCATCACGAGTGA 60.604 52.381 8.48 8.48 43.15 3.41
7267 7911 1.144936 CTCACCGATCTTCCCAGGC 59.855 63.158 0.00 0.00 0.00 4.85
7268 7912 2.190578 CACCGATCTTCCCAGGCC 59.809 66.667 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 7.522374 AGTTAGTTTCGAGCAAAATGAGAATC 58.478 34.615 0.00 0.00 0.00 2.52
16 17 7.440523 AGTTAGTTTCGAGCAAAATGAGAAT 57.559 32.000 0.00 0.00 0.00 2.40
17 18 6.861065 AGTTAGTTTCGAGCAAAATGAGAA 57.139 33.333 0.00 0.00 0.00 2.87
18 19 6.481976 TCAAGTTAGTTTCGAGCAAAATGAGA 59.518 34.615 0.00 0.00 0.00 3.27
19 20 6.658831 TCAAGTTAGTTTCGAGCAAAATGAG 58.341 36.000 0.00 0.00 0.00 2.90
20 21 6.481976 TCTCAAGTTAGTTTCGAGCAAAATGA 59.518 34.615 0.00 0.00 0.00 2.57
21 22 6.658831 TCTCAAGTTAGTTTCGAGCAAAATG 58.341 36.000 0.00 0.00 0.00 2.32
22 23 6.861065 TCTCAAGTTAGTTTCGAGCAAAAT 57.139 33.333 0.00 0.00 0.00 1.82
23 24 6.481976 TGATCTCAAGTTAGTTTCGAGCAAAA 59.518 34.615 0.00 0.00 0.00 2.44
24 25 5.989168 TGATCTCAAGTTAGTTTCGAGCAAA 59.011 36.000 0.00 0.00 0.00 3.68
25 26 5.538118 TGATCTCAAGTTAGTTTCGAGCAA 58.462 37.500 0.00 0.00 0.00 3.91
26 27 5.134202 TGATCTCAAGTTAGTTTCGAGCA 57.866 39.130 0.00 0.00 0.00 4.26
27 28 5.635700 AGTTGATCTCAAGTTAGTTTCGAGC 59.364 40.000 0.00 0.00 36.15 5.03
28 29 6.032985 CGAGTTGATCTCAAGTTAGTTTCGAG 59.967 42.308 1.99 0.00 42.88 4.04
29 30 5.856986 CGAGTTGATCTCAAGTTAGTTTCGA 59.143 40.000 1.99 0.00 42.88 3.71
30 31 5.856986 TCGAGTTGATCTCAAGTTAGTTTCG 59.143 40.000 1.99 1.11 42.88 3.46
31 32 7.085116 TCTCGAGTTGATCTCAAGTTAGTTTC 58.915 38.462 13.13 0.00 42.88 2.78
32 33 6.982852 TCTCGAGTTGATCTCAAGTTAGTTT 58.017 36.000 13.13 0.00 42.88 2.66
33 34 6.576662 TCTCGAGTTGATCTCAAGTTAGTT 57.423 37.500 13.13 0.00 42.88 2.24
34 35 6.457663 CGATCTCGAGTTGATCTCAAGTTAGT 60.458 42.308 13.13 0.00 42.88 2.24
35 36 5.906838 CGATCTCGAGTTGATCTCAAGTTAG 59.093 44.000 13.13 4.01 42.88 2.34
36 37 5.354513 ACGATCTCGAGTTGATCTCAAGTTA 59.645 40.000 13.13 0.00 42.88 2.24
37 38 4.156922 ACGATCTCGAGTTGATCTCAAGTT 59.843 41.667 13.13 0.00 42.88 2.66
38 39 3.692101 ACGATCTCGAGTTGATCTCAAGT 59.308 43.478 13.13 0.00 42.88 3.16
39 40 4.285807 ACGATCTCGAGTTGATCTCAAG 57.714 45.455 13.13 0.00 42.88 3.02
40 41 4.703645 AACGATCTCGAGTTGATCTCAA 57.296 40.909 13.13 0.00 42.88 3.02
41 42 7.492352 TTATAACGATCTCGAGTTGATCTCA 57.508 36.000 13.13 0.00 42.88 3.27
42 43 6.521821 GCTTATAACGATCTCGAGTTGATCTC 59.478 42.308 13.13 0.79 43.02 2.75
43 44 6.205853 AGCTTATAACGATCTCGAGTTGATCT 59.794 38.462 13.13 0.00 43.02 2.75
44 45 6.304445 CAGCTTATAACGATCTCGAGTTGATC 59.696 42.308 13.13 7.66 43.02 2.92
45 46 6.017026 TCAGCTTATAACGATCTCGAGTTGAT 60.017 38.462 13.13 0.00 43.02 2.57
46 47 5.296035 TCAGCTTATAACGATCTCGAGTTGA 59.704 40.000 13.13 3.98 43.02 3.18
47 48 5.511571 TCAGCTTATAACGATCTCGAGTTG 58.488 41.667 13.13 6.52 43.02 3.16
48 49 5.752892 TCAGCTTATAACGATCTCGAGTT 57.247 39.130 13.13 3.51 43.02 3.01
49 50 4.319911 GCTCAGCTTATAACGATCTCGAGT 60.320 45.833 13.13 0.00 43.02 4.18
50 51 4.155449 GCTCAGCTTATAACGATCTCGAG 58.845 47.826 5.93 5.93 43.02 4.04
51 52 3.564225 TGCTCAGCTTATAACGATCTCGA 59.436 43.478 6.60 0.00 43.02 4.04
52 53 3.666334 GTGCTCAGCTTATAACGATCTCG 59.334 47.826 0.00 0.00 46.33 4.04
53 54 3.666334 CGTGCTCAGCTTATAACGATCTC 59.334 47.826 0.00 0.00 33.03 2.75
54 55 3.315470 TCGTGCTCAGCTTATAACGATCT 59.685 43.478 5.13 0.00 35.35 2.75
55 56 3.629058 TCGTGCTCAGCTTATAACGATC 58.371 45.455 5.13 0.00 35.35 3.69
56 57 3.066900 ACTCGTGCTCAGCTTATAACGAT 59.933 43.478 9.36 0.00 39.10 3.73
57 58 2.422479 ACTCGTGCTCAGCTTATAACGA 59.578 45.455 8.68 8.68 37.68 3.85
58 59 2.784380 GACTCGTGCTCAGCTTATAACG 59.216 50.000 0.00 0.00 0.00 3.18
59 60 3.770666 TGACTCGTGCTCAGCTTATAAC 58.229 45.455 0.00 0.00 0.00 1.89
60 61 4.142160 ACATGACTCGTGCTCAGCTTATAA 60.142 41.667 0.00 0.00 0.00 0.98
61 62 3.381590 ACATGACTCGTGCTCAGCTTATA 59.618 43.478 0.00 0.00 0.00 0.98
62 63 2.167281 ACATGACTCGTGCTCAGCTTAT 59.833 45.455 0.00 0.00 0.00 1.73
63 64 1.546029 ACATGACTCGTGCTCAGCTTA 59.454 47.619 0.00 0.00 0.00 3.09
64 65 0.319728 ACATGACTCGTGCTCAGCTT 59.680 50.000 0.00 0.00 0.00 3.74
65 66 0.319728 AACATGACTCGTGCTCAGCT 59.680 50.000 0.00 0.00 0.00 4.24
66 67 1.151668 AAACATGACTCGTGCTCAGC 58.848 50.000 0.00 0.00 0.00 4.26
67 68 3.740832 TGTAAAACATGACTCGTGCTCAG 59.259 43.478 0.00 0.00 0.00 3.35
68 69 3.723260 TGTAAAACATGACTCGTGCTCA 58.277 40.909 0.00 0.00 0.00 4.26
69 70 3.423645 GCTGTAAAACATGACTCGTGCTC 60.424 47.826 0.00 0.00 0.00 4.26
70 71 2.480419 GCTGTAAAACATGACTCGTGCT 59.520 45.455 0.00 0.00 0.00 4.40
71 72 2.480419 AGCTGTAAAACATGACTCGTGC 59.520 45.455 0.00 0.00 0.00 5.34
72 73 3.181540 CGAGCTGTAAAACATGACTCGTG 60.182 47.826 0.00 0.00 40.33 4.35
73 74 2.987149 CGAGCTGTAAAACATGACTCGT 59.013 45.455 0.00 0.00 40.33 4.18
74 75 2.345641 CCGAGCTGTAAAACATGACTCG 59.654 50.000 0.00 14.95 43.72 4.18
75 76 2.094417 GCCGAGCTGTAAAACATGACTC 59.906 50.000 0.00 0.00 0.00 3.36
76 77 2.076863 GCCGAGCTGTAAAACATGACT 58.923 47.619 0.00 0.00 0.00 3.41
77 78 2.076863 AGCCGAGCTGTAAAACATGAC 58.923 47.619 0.00 0.00 37.57 3.06
78 79 2.472695 AGCCGAGCTGTAAAACATGA 57.527 45.000 0.00 0.00 37.57 3.07
79 80 3.058293 TCAAAGCCGAGCTGTAAAACATG 60.058 43.478 0.00 0.00 39.62 3.21
80 81 3.146066 TCAAAGCCGAGCTGTAAAACAT 58.854 40.909 0.00 0.00 39.62 2.71
81 82 2.548057 CTCAAAGCCGAGCTGTAAAACA 59.452 45.455 0.00 0.00 39.62 2.83
82 83 3.188895 CTCAAAGCCGAGCTGTAAAAC 57.811 47.619 0.00 0.00 39.62 2.43
91 92 1.074752 GAGTGAAGCTCAAAGCCGAG 58.925 55.000 0.00 0.00 43.77 4.63
92 93 0.667487 CGAGTGAAGCTCAAAGCCGA 60.667 55.000 0.00 0.00 43.77 5.54
93 94 1.630244 CCGAGTGAAGCTCAAAGCCG 61.630 60.000 0.00 0.00 43.77 5.52
94 95 0.603975 ACCGAGTGAAGCTCAAAGCC 60.604 55.000 0.00 0.00 43.77 4.35
95 96 1.230324 AACCGAGTGAAGCTCAAAGC 58.770 50.000 0.00 0.00 44.33 3.51
96 97 2.872245 TCAAACCGAGTGAAGCTCAAAG 59.128 45.455 0.00 0.00 44.33 2.77
97 98 2.872245 CTCAAACCGAGTGAAGCTCAAA 59.128 45.455 0.00 0.00 44.33 2.69
98 99 2.483876 CTCAAACCGAGTGAAGCTCAA 58.516 47.619 0.00 0.00 44.33 3.02
99 100 1.873903 GCTCAAACCGAGTGAAGCTCA 60.874 52.381 0.00 0.00 44.33 4.26
100 101 0.793250 GCTCAAACCGAGTGAAGCTC 59.207 55.000 0.00 0.00 44.33 4.09
101 102 0.394565 AGCTCAAACCGAGTGAAGCT 59.605 50.000 0.00 0.00 44.33 3.74
102 103 0.793250 GAGCTCAAACCGAGTGAAGC 59.207 55.000 9.40 0.00 44.33 3.86
103 104 1.063806 CGAGCTCAAACCGAGTGAAG 58.936 55.000 15.40 0.00 44.33 3.02
104 105 0.944311 GCGAGCTCAAACCGAGTGAA 60.944 55.000 15.40 0.00 44.33 3.18
105 106 1.372997 GCGAGCTCAAACCGAGTGA 60.373 57.895 15.40 0.00 44.33 3.41
106 107 1.347817 GAGCGAGCTCAAACCGAGTG 61.348 60.000 19.09 0.00 44.33 3.51
107 108 1.080434 GAGCGAGCTCAAACCGAGT 60.080 57.895 19.09 0.00 44.33 4.18
108 109 2.155194 CGAGCGAGCTCAAACCGAG 61.155 63.158 22.81 3.13 45.37 4.63
109 110 2.126463 CGAGCGAGCTCAAACCGA 60.126 61.111 22.81 0.00 42.86 4.69
110 111 1.078759 ATTCGAGCGAGCTCAAACCG 61.079 55.000 22.81 11.06 42.86 4.44
111 112 1.079503 AATTCGAGCGAGCTCAAACC 58.920 50.000 22.81 0.00 42.86 3.27
112 113 2.882742 AAATTCGAGCGAGCTCAAAC 57.117 45.000 22.81 2.13 42.86 2.93
113 114 3.896648 AAAAATTCGAGCGAGCTCAAA 57.103 38.095 22.81 12.96 42.86 2.69
114 115 6.478673 TCATATAAAAATTCGAGCGAGCTCAA 59.521 34.615 22.81 16.09 42.86 3.02
115 116 5.983118 TCATATAAAAATTCGAGCGAGCTCA 59.017 36.000 22.81 6.73 42.86 4.26
116 117 6.144724 ACTCATATAAAAATTCGAGCGAGCTC 59.855 38.462 14.61 14.61 39.55 4.09
117 118 5.986135 ACTCATATAAAAATTCGAGCGAGCT 59.014 36.000 0.00 0.00 0.00 4.09
118 119 6.216750 ACTCATATAAAAATTCGAGCGAGC 57.783 37.500 0.00 0.00 0.00 5.03
119 120 7.841486 TCAACTCATATAAAAATTCGAGCGAG 58.159 34.615 0.00 0.00 0.00 5.03
120 121 7.516785 GCTCAACTCATATAAAAATTCGAGCGA 60.517 37.037 0.00 0.00 32.63 4.93
121 122 6.571520 GCTCAACTCATATAAAAATTCGAGCG 59.428 38.462 0.00 0.00 32.63 5.03
122 123 7.634522 AGCTCAACTCATATAAAAATTCGAGC 58.365 34.615 0.00 0.00 40.91 5.03
125 126 9.374960 GCTTAGCTCAACTCATATAAAAATTCG 57.625 33.333 0.00 0.00 0.00 3.34
126 127 9.670719 GGCTTAGCTCAACTCATATAAAAATTC 57.329 33.333 3.59 0.00 0.00 2.17
127 128 9.189156 TGGCTTAGCTCAACTCATATAAAAATT 57.811 29.630 3.59 0.00 0.00 1.82
128 129 8.752005 TGGCTTAGCTCAACTCATATAAAAAT 57.248 30.769 3.59 0.00 0.00 1.82
129 130 8.458843 GTTGGCTTAGCTCAACTCATATAAAAA 58.541 33.333 22.18 0.00 37.04 1.94
130 131 7.829211 AGTTGGCTTAGCTCAACTCATATAAAA 59.171 33.333 24.69 0.00 42.04 1.52
131 132 7.338710 AGTTGGCTTAGCTCAACTCATATAAA 58.661 34.615 24.69 0.00 42.04 1.40
132 133 6.889198 AGTTGGCTTAGCTCAACTCATATAA 58.111 36.000 24.69 0.00 42.04 0.98
133 134 6.485830 AGTTGGCTTAGCTCAACTCATATA 57.514 37.500 24.69 0.00 42.04 0.86
134 135 5.365021 AGTTGGCTTAGCTCAACTCATAT 57.635 39.130 24.69 11.07 42.04 1.78
135 136 4.826274 AGTTGGCTTAGCTCAACTCATA 57.174 40.909 24.69 0.00 42.04 2.15
136 137 3.710209 AGTTGGCTTAGCTCAACTCAT 57.290 42.857 24.69 11.59 42.04 2.90
137 138 3.181455 TGAAGTTGGCTTAGCTCAACTCA 60.181 43.478 27.86 24.02 43.55 3.41
138 139 3.403038 TGAAGTTGGCTTAGCTCAACTC 58.597 45.455 27.86 22.63 43.55 3.01
139 140 3.492102 TGAAGTTGGCTTAGCTCAACT 57.508 42.857 24.69 24.69 44.95 3.16
140 141 3.565902 AGTTGAAGTTGGCTTAGCTCAAC 59.434 43.478 21.06 21.06 38.78 3.18
141 142 3.815401 GAGTTGAAGTTGGCTTAGCTCAA 59.185 43.478 3.59 2.88 34.61 3.02
142 143 3.403038 GAGTTGAAGTTGGCTTAGCTCA 58.597 45.455 3.59 0.00 34.61 4.26
143 144 2.413453 CGAGTTGAAGTTGGCTTAGCTC 59.587 50.000 3.59 0.00 34.61 4.09
144 145 2.224305 ACGAGTTGAAGTTGGCTTAGCT 60.224 45.455 3.59 0.00 34.61 3.32
145 146 2.143925 ACGAGTTGAAGTTGGCTTAGC 58.856 47.619 0.00 0.00 34.61 3.09
146 147 3.120991 CGAACGAGTTGAAGTTGGCTTAG 60.121 47.826 0.00 0.00 34.61 2.18
147 148 2.798283 CGAACGAGTTGAAGTTGGCTTA 59.202 45.455 0.00 0.00 34.61 3.09
148 149 1.597663 CGAACGAGTTGAAGTTGGCTT 59.402 47.619 0.00 0.00 37.71 4.35
149 150 1.202486 TCGAACGAGTTGAAGTTGGCT 60.202 47.619 0.00 0.00 0.00 4.75
150 151 1.214367 TCGAACGAGTTGAAGTTGGC 58.786 50.000 0.00 0.00 0.00 4.52
151 152 2.864343 AGTTCGAACGAGTTGAAGTTGG 59.136 45.455 21.87 0.00 0.00 3.77
152 153 3.360765 CGAGTTCGAACGAGTTGAAGTTG 60.361 47.826 21.87 2.25 43.02 3.16
153 154 2.787680 CGAGTTCGAACGAGTTGAAGTT 59.212 45.455 21.87 0.71 43.02 2.66
154 155 2.032550 TCGAGTTCGAACGAGTTGAAGT 59.967 45.455 21.87 1.48 46.30 3.01
155 156 2.647337 TCGAGTTCGAACGAGTTGAAG 58.353 47.619 21.87 8.81 46.30 3.02
156 157 2.761392 TCGAGTTCGAACGAGTTGAA 57.239 45.000 21.87 2.98 46.30 2.69
176 177 4.675029 AACACCCCCGCGAACGAG 62.675 66.667 8.23 0.00 43.93 4.18
177 178 4.668118 GAACACCCCCGCGAACGA 62.668 66.667 8.23 0.00 43.93 3.85
185 186 4.754667 GTCTCGCCGAACACCCCC 62.755 72.222 0.00 0.00 0.00 5.40
187 188 4.353437 ACGTCTCGCCGAACACCC 62.353 66.667 0.00 0.00 0.00 4.61
188 189 3.103911 CACGTCTCGCCGAACACC 61.104 66.667 0.00 0.00 0.00 4.16
189 190 3.764049 GCACGTCTCGCCGAACAC 61.764 66.667 0.00 0.00 0.00 3.32
198 199 3.414700 CTTGGTGCCGCACGTCTC 61.415 66.667 17.13 4.09 34.83 3.36
199 200 4.235762 ACTTGGTGCCGCACGTCT 62.236 61.111 17.13 0.00 34.83 4.18
200 201 3.712881 GACTTGGTGCCGCACGTC 61.713 66.667 17.13 14.46 34.83 4.34
203 204 3.660111 GTGGACTTGGTGCCGCAC 61.660 66.667 15.50 15.50 34.84 5.34
204 205 4.947147 GGTGGACTTGGTGCCGCA 62.947 66.667 0.00 0.00 36.41 5.69
205 206 4.947147 TGGTGGACTTGGTGCCGC 62.947 66.667 0.00 0.00 0.00 6.53
206 207 2.978010 GTGGTGGACTTGGTGCCG 60.978 66.667 0.00 0.00 0.00 5.69
207 208 2.597510 GGTGGTGGACTTGGTGCC 60.598 66.667 0.00 0.00 0.00 5.01
208 209 2.193536 GTGGTGGTGGACTTGGTGC 61.194 63.158 0.00 0.00 0.00 5.01
209 210 1.528309 GGTGGTGGTGGACTTGGTG 60.528 63.158 0.00 0.00 0.00 4.17
210 211 2.004120 TGGTGGTGGTGGACTTGGT 61.004 57.895 0.00 0.00 0.00 3.67
211 212 1.528309 GTGGTGGTGGTGGACTTGG 60.528 63.158 0.00 0.00 0.00 3.61
212 213 1.528309 GGTGGTGGTGGTGGACTTG 60.528 63.158 0.00 0.00 0.00 3.16
213 214 2.004120 TGGTGGTGGTGGTGGACTT 61.004 57.895 0.00 0.00 0.00 3.01
214 215 2.367648 TGGTGGTGGTGGTGGACT 60.368 61.111 0.00 0.00 0.00 3.85
215 216 2.203294 GTGGTGGTGGTGGTGGAC 60.203 66.667 0.00 0.00 0.00 4.02
216 217 3.494254 GGTGGTGGTGGTGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
217 218 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
218 219 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
219 220 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
220 221 3.145473 ATGGTGGTGGTGGTGGTGG 62.145 63.158 0.00 0.00 0.00 4.61
221 222 1.603455 GATGGTGGTGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
222 223 1.434513 ATGATGGTGGTGGTGGTGGT 61.435 55.000 0.00 0.00 0.00 4.16
223 224 0.680921 GATGATGGTGGTGGTGGTGG 60.681 60.000 0.00 0.00 0.00 4.61
224 225 1.026182 CGATGATGGTGGTGGTGGTG 61.026 60.000 0.00 0.00 0.00 4.17
225 226 1.299648 CGATGATGGTGGTGGTGGT 59.700 57.895 0.00 0.00 0.00 4.16
226 227 0.744414 GACGATGATGGTGGTGGTGG 60.744 60.000 0.00 0.00 0.00 4.61
227 228 0.036483 TGACGATGATGGTGGTGGTG 60.036 55.000 0.00 0.00 0.00 4.17
228 229 0.036388 GTGACGATGATGGTGGTGGT 60.036 55.000 0.00 0.00 0.00 4.16
229 230 0.744414 GGTGACGATGATGGTGGTGG 60.744 60.000 0.00 0.00 0.00 4.61
230 231 2.767536 GGTGACGATGATGGTGGTG 58.232 57.895 0.00 0.00 0.00 4.17
243 244 4.927782 TGCTGTGGTGGCGGTGAC 62.928 66.667 0.00 0.00 0.00 3.67
244 245 4.182433 TTGCTGTGGTGGCGGTGA 62.182 61.111 0.00 0.00 0.00 4.02
245 246 3.964875 GTTGCTGTGGTGGCGGTG 61.965 66.667 0.00 0.00 0.00 4.94
249 250 2.837291 TTGGGTTGCTGTGGTGGC 60.837 61.111 0.00 0.00 0.00 5.01
250 251 1.326213 TTGTTGGGTTGCTGTGGTGG 61.326 55.000 0.00 0.00 0.00 4.61
251 252 0.534412 TTTGTTGGGTTGCTGTGGTG 59.466 50.000 0.00 0.00 0.00 4.17
252 253 0.534873 GTTTGTTGGGTTGCTGTGGT 59.465 50.000 0.00 0.00 0.00 4.16
253 254 0.179086 GGTTTGTTGGGTTGCTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
254 255 0.527385 CGGTTTGTTGGGTTGCTGTG 60.527 55.000 0.00 0.00 0.00 3.66
255 256 1.813192 CGGTTTGTTGGGTTGCTGT 59.187 52.632 0.00 0.00 0.00 4.40
256 257 1.591327 GCGGTTTGTTGGGTTGCTG 60.591 57.895 0.00 0.00 0.00 4.41
257 258 2.811799 GCGGTTTGTTGGGTTGCT 59.188 55.556 0.00 0.00 0.00 3.91
258 259 2.656973 CGCGGTTTGTTGGGTTGC 60.657 61.111 0.00 0.00 0.00 4.17
259 260 2.026879 CCGCGGTTTGTTGGGTTG 59.973 61.111 19.50 0.00 0.00 3.77
260 261 2.124236 TCCGCGGTTTGTTGGGTT 60.124 55.556 27.15 0.00 0.00 4.11
261 262 2.593436 CTCCGCGGTTTGTTGGGT 60.593 61.111 27.15 0.00 0.00 4.51
262 263 2.281208 TCTCCGCGGTTTGTTGGG 60.281 61.111 27.15 0.00 0.00 4.12
263 264 2.325082 CCTCTCCGCGGTTTGTTGG 61.325 63.158 27.15 15.40 0.00 3.77
264 265 2.966309 GCCTCTCCGCGGTTTGTTG 61.966 63.158 27.15 11.15 0.00 3.33
265 266 2.668550 GCCTCTCCGCGGTTTGTT 60.669 61.111 27.15 0.00 0.00 2.83
282 283 3.458163 TAGAGCAACCGCCCCTCG 61.458 66.667 0.00 0.00 39.83 4.63
283 284 2.187163 GTAGAGCAACCGCCCCTC 59.813 66.667 0.00 0.00 39.83 4.30
284 285 2.284699 AGTAGAGCAACCGCCCCT 60.285 61.111 0.00 0.00 39.83 4.79
285 286 2.125106 CAGTAGAGCAACCGCCCC 60.125 66.667 0.00 0.00 39.83 5.80
286 287 2.820037 GCAGTAGAGCAACCGCCC 60.820 66.667 0.00 0.00 39.83 6.13
287 288 2.103042 CAGCAGTAGAGCAACCGCC 61.103 63.158 0.00 0.00 39.83 6.13
288 289 2.744768 GCAGCAGTAGAGCAACCGC 61.745 63.158 0.00 0.00 36.85 5.68
289 290 1.079543 AGCAGCAGTAGAGCAACCG 60.080 57.895 0.00 0.00 36.85 4.44
290 291 0.742635 GGAGCAGCAGTAGAGCAACC 60.743 60.000 0.00 0.00 36.85 3.77
291 292 0.742635 GGGAGCAGCAGTAGAGCAAC 60.743 60.000 0.00 0.00 36.85 4.17
292 293 0.906756 AGGGAGCAGCAGTAGAGCAA 60.907 55.000 0.00 0.00 36.85 3.91
293 294 1.305633 AGGGAGCAGCAGTAGAGCA 60.306 57.895 0.00 0.00 36.85 4.26
294 295 1.441311 GAGGGAGCAGCAGTAGAGC 59.559 63.158 0.00 0.00 0.00 4.09
295 296 0.396974 AGGAGGGAGCAGCAGTAGAG 60.397 60.000 0.00 0.00 0.00 2.43
296 297 0.927029 TAGGAGGGAGCAGCAGTAGA 59.073 55.000 0.00 0.00 0.00 2.59
297 298 1.036707 GTAGGAGGGAGCAGCAGTAG 58.963 60.000 0.00 0.00 0.00 2.57
298 299 0.397254 GGTAGGAGGGAGCAGCAGTA 60.397 60.000 0.00 0.00 0.00 2.74
299 300 1.687493 GGTAGGAGGGAGCAGCAGT 60.687 63.158 0.00 0.00 0.00 4.40
300 301 2.790791 CGGTAGGAGGGAGCAGCAG 61.791 68.421 0.00 0.00 0.00 4.24
301 302 2.759973 CGGTAGGAGGGAGCAGCA 60.760 66.667 0.00 0.00 0.00 4.41
302 303 4.228567 GCGGTAGGAGGGAGCAGC 62.229 72.222 0.00 0.00 0.00 5.25
303 304 2.443016 AGCGGTAGGAGGGAGCAG 60.443 66.667 0.00 0.00 0.00 4.24
304 305 2.219449 TACAGCGGTAGGAGGGAGCA 62.219 60.000 0.00 0.00 0.00 4.26
305 306 1.455217 TACAGCGGTAGGAGGGAGC 60.455 63.158 0.00 0.00 0.00 4.70
306 307 1.108132 GGTACAGCGGTAGGAGGGAG 61.108 65.000 0.00 0.00 0.00 4.30
307 308 1.076485 GGTACAGCGGTAGGAGGGA 60.076 63.158 0.00 0.00 0.00 4.20
308 309 2.487532 CGGTACAGCGGTAGGAGGG 61.488 68.421 0.00 0.00 0.00 4.30
309 310 2.487532 CCGGTACAGCGGTAGGAGG 61.488 68.421 11.59 0.00 0.00 4.30
310 311 3.117372 CCGGTACAGCGGTAGGAG 58.883 66.667 11.59 0.00 0.00 3.69
311 312 3.142838 GCCGGTACAGCGGTAGGA 61.143 66.667 19.87 0.00 0.00 2.94
352 353 4.162690 AAGCGCTAGAAGGGGCCG 62.163 66.667 12.05 0.00 44.57 6.13
353 354 2.203084 GAAGCGCTAGAAGGGGCC 60.203 66.667 12.05 0.00 44.57 5.80
354 355 2.586357 CGAAGCGCTAGAAGGGGC 60.586 66.667 12.05 0.00 43.97 5.80
372 373 2.152699 CCTGCTACACGACGCGAAG 61.153 63.158 15.93 8.81 0.00 3.79
373 374 2.126618 CCTGCTACACGACGCGAA 60.127 61.111 15.93 0.00 0.00 4.70
374 375 3.035576 CTCCTGCTACACGACGCGA 62.036 63.158 15.93 0.00 0.00 5.87
375 376 2.577112 CTCCTGCTACACGACGCG 60.577 66.667 3.53 3.53 0.00 6.01
376 377 1.226435 CTCTCCTGCTACACGACGC 60.226 63.158 0.00 0.00 0.00 5.19
377 378 0.179187 CACTCTCCTGCTACACGACG 60.179 60.000 0.00 0.00 0.00 5.12
378 379 0.456995 GCACTCTCCTGCTACACGAC 60.457 60.000 0.00 0.00 34.06 4.34
379 380 0.609406 AGCACTCTCCTGCTACACGA 60.609 55.000 0.00 0.00 46.03 4.35
380 381 1.095600 TAGCACTCTCCTGCTACACG 58.904 55.000 0.00 0.00 46.03 4.49
384 385 1.769026 CTGGTAGCACTCTCCTGCTA 58.231 55.000 0.00 0.00 46.03 3.49
386 387 1.153469 GCTGGTAGCACTCTCCTGC 60.153 63.158 0.00 7.50 41.89 4.85
387 388 1.140589 CGCTGGTAGCACTCTCCTG 59.859 63.158 1.45 0.00 42.58 3.86
388 389 2.055042 CCGCTGGTAGCACTCTCCT 61.055 63.158 1.45 0.00 42.58 3.69
389 390 2.496817 CCGCTGGTAGCACTCTCC 59.503 66.667 1.45 0.00 42.58 3.71
390 391 2.352032 ACCCGCTGGTAGCACTCTC 61.352 63.158 0.00 0.00 45.45 3.20
391 392 2.283966 ACCCGCTGGTAGCACTCT 60.284 61.111 0.00 0.00 45.45 3.24
410 411 1.800681 GTTAGTCCCACGCCATTGC 59.199 57.895 0.00 0.00 0.00 3.56
411 412 2.086510 CGTTAGTCCCACGCCATTG 58.913 57.895 0.00 0.00 0.00 2.82
412 413 4.609995 CGTTAGTCCCACGCCATT 57.390 55.556 0.00 0.00 0.00 3.16
443 444 4.267503 GATCCGGACCGTCGAGCC 62.268 72.222 6.12 0.00 0.00 4.70
444 445 2.351336 ATTGATCCGGACCGTCGAGC 62.351 60.000 6.12 7.30 0.00 5.03
445 446 0.102481 AATTGATCCGGACCGTCGAG 59.898 55.000 6.12 0.00 0.00 4.04
446 447 0.101759 GAATTGATCCGGACCGTCGA 59.898 55.000 6.12 0.00 0.00 4.20
447 448 0.874607 GGAATTGATCCGGACCGTCG 60.875 60.000 6.12 0.00 38.79 5.12
458 459 1.024579 GGGCGTGTGACGGAATTGAT 61.025 55.000 0.00 0.00 42.82 2.57
510 511 3.278574 CCGTAGAAATGGCCAAATGAGA 58.721 45.455 10.96 0.00 0.00 3.27
512 513 3.013921 GACCGTAGAAATGGCCAAATGA 58.986 45.455 10.96 0.00 34.84 2.57
513 514 2.099098 GGACCGTAGAAATGGCCAAATG 59.901 50.000 10.96 0.00 34.84 2.32
514 515 2.291282 TGGACCGTAGAAATGGCCAAAT 60.291 45.455 10.96 0.00 35.97 2.32
515 516 1.074084 TGGACCGTAGAAATGGCCAAA 59.926 47.619 10.96 0.00 35.97 3.28
516 517 0.693622 TGGACCGTAGAAATGGCCAA 59.306 50.000 10.96 0.00 35.97 4.52
517 518 0.251916 CTGGACCGTAGAAATGGCCA 59.748 55.000 8.56 8.56 36.32 5.36
518 519 1.095807 GCTGGACCGTAGAAATGGCC 61.096 60.000 0.00 0.00 34.84 5.36
519 520 0.107654 AGCTGGACCGTAGAAATGGC 60.108 55.000 0.00 0.00 34.84 4.40
639 671 2.223758 GCTCTGGCGGTAAGGTAAGTAG 60.224 54.545 0.00 0.00 0.00 2.57
843 879 4.162690 AAGCGCTAGAAGGGGCCG 62.163 66.667 12.05 0.00 44.57 6.13
845 881 2.586357 CGAAGCGCTAGAAGGGGC 60.586 66.667 12.05 0.00 43.97 5.80
864 916 2.126618 CCTGCTACACGACGCGAA 60.127 61.111 15.93 0.00 0.00 4.70
868 920 0.179187 CACTCTCCTGCTACACGACG 60.179 60.000 0.00 0.00 0.00 5.12
906 958 4.416738 AGAGCGGCTGGGGAAAGC 62.417 66.667 7.50 0.00 42.75 3.51
908 960 2.815684 TAGGAGAGCGGCTGGGGAAA 62.816 60.000 7.50 0.00 0.00 3.13
909 961 2.605535 ATAGGAGAGCGGCTGGGGAA 62.606 60.000 7.50 0.00 0.00 3.97
910 962 2.605535 AATAGGAGAGCGGCTGGGGA 62.606 60.000 7.50 0.00 0.00 4.81
911 963 0.832135 TAATAGGAGAGCGGCTGGGG 60.832 60.000 7.50 0.00 0.00 4.96
914 966 2.354203 GGGAATAATAGGAGAGCGGCTG 60.354 54.545 7.50 0.00 0.00 4.85
915 967 1.903183 GGGAATAATAGGAGAGCGGCT 59.097 52.381 0.00 0.00 0.00 5.52
917 969 1.555533 GGGGGAATAATAGGAGAGCGG 59.444 57.143 0.00 0.00 0.00 5.52
918 970 2.257207 TGGGGGAATAATAGGAGAGCG 58.743 52.381 0.00 0.00 0.00 5.03
919 971 4.936685 ATTGGGGGAATAATAGGAGAGC 57.063 45.455 0.00 0.00 0.00 4.09
921 973 5.495787 AGGAATTGGGGGAATAATAGGAGA 58.504 41.667 0.00 0.00 0.00 3.71
924 976 7.530995 AGATAGGAATTGGGGGAATAATAGG 57.469 40.000 0.00 0.00 0.00 2.57
933 1002 1.003233 GCGGTAGATAGGAATTGGGGG 59.997 57.143 0.00 0.00 0.00 5.40
1072 1154 4.504689 GGCTGAATTTGTGGAATTTGGGAA 60.505 41.667 0.00 0.00 38.06 3.97
1129 1211 5.358090 GGAAGAACCCTATTTCTACTTCCG 58.642 45.833 0.00 0.00 41.12 4.30
1168 1252 1.808945 CTCTGTGTGGAATTGAGTGGC 59.191 52.381 0.00 0.00 0.00 5.01
1172 1256 6.483307 TCAAACTAACTCTGTGTGGAATTGAG 59.517 38.462 0.00 0.00 0.00 3.02
1201 1285 5.163077 TGGTCACTACCCATAACCTCAAAAA 60.163 40.000 0.00 0.00 46.16 1.94
1363 1447 4.702131 ACCAAGTAAAATTAGGCTCAGCTG 59.298 41.667 7.63 7.63 0.00 4.24
1630 1720 7.081526 ACTCAGTAGTACAATGTACCGTAAG 57.918 40.000 18.85 12.62 32.84 2.34
1769 1862 0.469917 AGGCATTGAATCGATCGGGT 59.530 50.000 16.41 2.87 0.00 5.28
1822 1916 1.267806 GCAAGGTCATGTGGTTGTGAG 59.732 52.381 0.00 0.00 0.00 3.51
1840 1934 1.377202 GATCGTTTGCAGGGAGGCA 60.377 57.895 0.00 0.00 43.19 4.75
1851 1945 3.926616 CGGAGCTATATTGGGATCGTTT 58.073 45.455 0.00 0.00 0.00 3.60
1902 1996 2.512286 GGCATACAGCTGCGCTCA 60.512 61.111 15.27 0.00 43.23 4.26
1940 2034 0.034616 GCAGCTTCTCACCTGACAGT 59.965 55.000 0.93 0.00 0.00 3.55
1954 2048 3.890936 GACCTTCCGTGCAGCAGCT 62.891 63.158 1.76 0.00 42.74 4.24
1964 2058 2.762234 CCTCCTCGTCGACCTTCCG 61.762 68.421 10.58 0.00 0.00 4.30
2005 2099 2.894902 GCTACTGCTAAGGGAGACAAC 58.105 52.381 0.00 0.00 34.86 3.32
2018 2112 2.622942 AGCTCTAGTGATCAGCTACTGC 59.377 50.000 4.69 9.38 41.84 4.40
2021 2115 3.486383 AGGAGCTCTAGTGATCAGCTAC 58.514 50.000 14.64 7.83 43.72 3.58
2022 2116 3.874383 AGGAGCTCTAGTGATCAGCTA 57.126 47.619 14.64 5.80 43.72 3.32
2024 2118 3.888930 ACTTAGGAGCTCTAGTGATCAGC 59.111 47.826 14.64 2.52 0.00 4.26
2026 2120 7.290813 TGATTACTTAGGAGCTCTAGTGATCA 58.709 38.462 27.38 27.38 34.24 2.92
2027 2121 7.753309 TGATTACTTAGGAGCTCTAGTGATC 57.247 40.000 24.77 24.77 31.23 2.92
2028 2122 7.947332 TCATGATTACTTAGGAGCTCTAGTGAT 59.053 37.037 14.64 15.35 0.00 3.06
2029 2123 7.290813 TCATGATTACTTAGGAGCTCTAGTGA 58.709 38.462 14.64 11.54 0.00 3.41
2030 2124 7.517614 TCATGATTACTTAGGAGCTCTAGTG 57.482 40.000 14.64 4.84 0.00 2.74
2031 2125 7.782644 AGTTCATGATTACTTAGGAGCTCTAGT 59.217 37.037 14.64 15.99 0.00 2.57
2032 2126 8.177119 AGTTCATGATTACTTAGGAGCTCTAG 57.823 38.462 14.64 11.09 0.00 2.43
2033 2127 8.540507 AAGTTCATGATTACTTAGGAGCTCTA 57.459 34.615 14.64 1.13 33.06 2.43
2034 2128 7.430760 AAGTTCATGATTACTTAGGAGCTCT 57.569 36.000 14.64 2.18 33.06 4.09
2035 2129 9.255304 CTAAAGTTCATGATTACTTAGGAGCTC 57.745 37.037 12.14 4.71 33.66 4.09
2036 2130 7.713073 GCTAAAGTTCATGATTACTTAGGAGCT 59.287 37.037 21.02 0.00 34.82 4.09
2037 2131 7.495934 TGCTAAAGTTCATGATTACTTAGGAGC 59.504 37.037 21.25 21.25 36.39 4.70
2038 2132 8.821894 GTGCTAAAGTTCATGATTACTTAGGAG 58.178 37.037 12.14 10.87 33.66 3.69
2039 2133 8.540388 AGTGCTAAAGTTCATGATTACTTAGGA 58.460 33.333 12.14 8.27 33.66 2.94
2040 2134 8.723942 AGTGCTAAAGTTCATGATTACTTAGG 57.276 34.615 12.14 9.45 33.66 2.69
2060 2154 9.816354 AGAACAAAATGTACAAAATTTAGTGCT 57.184 25.926 0.00 4.98 0.00 4.40
2071 2165 9.624697 GCTTCATCATTAGAACAAAATGTACAA 57.375 29.630 0.00 0.00 36.07 2.41
2072 2166 8.791675 TGCTTCATCATTAGAACAAAATGTACA 58.208 29.630 0.00 0.00 36.07 2.90
2073 2167 9.793252 ATGCTTCATCATTAGAACAAAATGTAC 57.207 29.630 0.00 0.00 36.07 2.90
2074 2168 9.791820 CATGCTTCATCATTAGAACAAAATGTA 57.208 29.630 0.00 0.00 36.07 2.29
2075 2169 7.762615 CCATGCTTCATCATTAGAACAAAATGT 59.237 33.333 0.00 0.00 36.07 2.71
2076 2170 7.977293 TCCATGCTTCATCATTAGAACAAAATG 59.023 33.333 0.00 0.00 35.98 2.32
2077 2171 8.070034 TCCATGCTTCATCATTAGAACAAAAT 57.930 30.769 0.00 0.00 0.00 1.82
2078 2172 7.465353 TCCATGCTTCATCATTAGAACAAAA 57.535 32.000 0.00 0.00 0.00 2.44
2079 2173 7.465353 TTCCATGCTTCATCATTAGAACAAA 57.535 32.000 0.00 0.00 0.00 2.83
2080 2174 7.201848 GGATTCCATGCTTCATCATTAGAACAA 60.202 37.037 0.00 0.00 0.00 2.83
2081 2175 6.263842 GGATTCCATGCTTCATCATTAGAACA 59.736 38.462 0.00 0.00 0.00 3.18
2082 2176 6.263842 TGGATTCCATGCTTCATCATTAGAAC 59.736 38.462 0.00 0.00 0.00 3.01
2083 2177 6.367161 TGGATTCCATGCTTCATCATTAGAA 58.633 36.000 0.00 0.00 0.00 2.10
2084 2178 5.944135 TGGATTCCATGCTTCATCATTAGA 58.056 37.500 0.00 0.00 0.00 2.10
2085 2179 6.489022 TCTTGGATTCCATGCTTCATCATTAG 59.511 38.462 6.15 0.00 31.53 1.73
2086 2180 6.367161 TCTTGGATTCCATGCTTCATCATTA 58.633 36.000 6.15 0.00 31.53 1.90
2113 2207 5.997746 AGACTAGTGCTAAAGTTTTGCATGA 59.002 36.000 23.98 15.24 39.00 3.07
2211 2305 7.518848 CGCTATGTAACATGTGATGCTGTTATT 60.519 37.037 0.00 0.00 39.34 1.40
2217 2311 4.058721 TCGCTATGTAACATGTGATGCT 57.941 40.909 0.00 0.00 0.00 3.79
2227 2446 4.393680 TGTGTCCCAAATTCGCTATGTAAC 59.606 41.667 0.00 0.00 0.00 2.50
2302 2521 2.787723 GACATGGATTGAACGTGTCG 57.212 50.000 0.00 0.00 42.77 4.35
2308 2527 5.067805 GGTTGGATAAGGACATGGATTGAAC 59.932 44.000 0.00 0.00 0.00 3.18
2324 2543 9.535170 TTTTTGTGGAACTTATATGGTTGGATA 57.465 29.630 1.51 0.00 38.04 2.59
2422 2654 1.968017 CCGCCAAGCACATCACACT 60.968 57.895 0.00 0.00 0.00 3.55
2424 2656 3.364441 GCCGCCAAGCACATCACA 61.364 61.111 0.00 0.00 0.00 3.58
2425 2657 4.120331 GGCCGCCAAGCACATCAC 62.120 66.667 3.91 0.00 0.00 3.06
2426 2658 4.657408 TGGCCGCCAAGCACATCA 62.657 61.111 10.50 0.00 0.00 3.07
3030 3298 2.278332 ACTCAACTGAAGCCTTTCCC 57.722 50.000 0.00 0.00 32.09 3.97
3246 3514 4.440663 CGTCTAGCTTCAGATGACATTCCA 60.441 45.833 0.00 0.00 34.06 3.53
3258 3526 5.168569 CAGAATAAACCACGTCTAGCTTCA 58.831 41.667 0.00 0.00 0.00 3.02
3831 4105 7.826918 ATCTGTATTACCACTACTCTCCTTC 57.173 40.000 0.00 0.00 0.00 3.46
3886 4160 2.350007 GCGTAGTTCGGAGCTCTGATAG 60.350 54.545 25.63 15.26 40.26 2.08
4035 4309 1.556911 AGGAATCTCAGCCGTCAACAT 59.443 47.619 0.00 0.00 0.00 2.71
4045 4319 4.499865 CGTACCATACCACAGGAATCTCAG 60.500 50.000 0.00 0.00 0.00 3.35
4067 4341 4.377021 TCTGTTTATAGCATAAGTGGCCG 58.623 43.478 0.00 0.00 0.00 6.13
4091 4365 4.186856 ACCAAAAGGCAATTTATGACCG 57.813 40.909 0.00 0.00 38.06 4.79
4198 4472 2.181125 TGTACCCATATGACCACACGT 58.819 47.619 3.65 0.00 0.00 4.49
4238 4512 1.064003 AACTAGGCACCCACACATCA 58.936 50.000 0.00 0.00 0.00 3.07
4245 4519 3.116096 AGATCAGTAACTAGGCACCCA 57.884 47.619 0.00 0.00 0.00 4.51
4394 4670 8.994429 TTGTTTATATGCCAAAACTTACATGG 57.006 30.769 0.00 0.00 36.70 3.66
4690 4970 8.780846 AGTTATCAAATTTCACATACGGTACA 57.219 30.769 0.00 0.00 0.00 2.90
5016 5296 2.074576 GATGGATCTGATGATGGCACG 58.925 52.381 0.00 0.00 32.19 5.34
5190 5470 5.002464 ACAAACTGATCTGCCAAATATGC 57.998 39.130 0.00 0.00 0.00 3.14
5192 5472 6.886459 ACACTACAAACTGATCTGCCAAATAT 59.114 34.615 0.00 0.00 0.00 1.28
5242 5522 9.884636 ATACAGAGTACACAGCAACAATATAAA 57.115 29.630 0.00 0.00 0.00 1.40
5265 5545 6.803642 ACGGAACTAAGGTCTAACATGATAC 58.196 40.000 0.00 0.00 0.00 2.24
5421 5701 7.751793 TGAATCAATCAAATGAACTTGACATCG 59.248 33.333 2.48 0.00 38.12 3.84
5453 5741 5.124936 TGCTGGAGAATCAGATGAACATTTG 59.875 40.000 0.00 0.00 36.93 2.32
5541 5834 7.502226 GGGTACTCACATGATTTTGGATAATCA 59.498 37.037 0.00 0.00 45.64 2.57
5564 5861 5.739935 GCAGTTCTGATTCAACAAAATGGGT 60.740 40.000 3.84 0.00 0.00 4.51
5565 5862 4.687483 GCAGTTCTGATTCAACAAAATGGG 59.313 41.667 3.84 0.00 0.00 4.00
5582 5879 1.462670 GCACTGTCTAAGCTGCAGTTC 59.537 52.381 16.64 0.00 40.99 3.01
5772 6069 2.426738 TCCTTGCCATCCTTTTATTGCG 59.573 45.455 0.00 0.00 0.00 4.85
5841 6138 5.808042 AATGCTATGTTCAGTACAGCAAG 57.192 39.130 5.96 0.00 40.15 4.01
5881 6178 4.988540 CGACAAGGAAGTCATCAAGTGTTA 59.011 41.667 0.00 0.00 38.43 2.41
5921 6218 2.225091 ACCATCAGCCTGACCATCAAAA 60.225 45.455 0.00 0.00 0.00 2.44
5963 6260 1.231958 GGCGGACCACAACGAAATCA 61.232 55.000 0.00 0.00 35.26 2.57
6059 6362 8.573035 GGTGTGGTTCATTACTTCAGAAATTTA 58.427 33.333 0.00 0.00 0.00 1.40
6074 6377 5.891551 GGGTATGAATTAAGGTGTGGTTCAT 59.108 40.000 0.00 0.00 41.10 2.57
6174 6581 1.450312 CGGCCCCATGTGTTCTCTC 60.450 63.158 0.00 0.00 0.00 3.20
6175 6582 2.671070 CGGCCCCATGTGTTCTCT 59.329 61.111 0.00 0.00 0.00 3.10
6476 6900 5.237996 CACAAGAAGAATCTGCACAGAAAGA 59.762 40.000 4.14 0.00 41.36 2.52
6600 7026 3.956199 ACAGCATCCCATGACCAAATAAG 59.044 43.478 0.00 0.00 0.00 1.73
6609 7035 2.618816 GGAAGAACACAGCATCCCATGA 60.619 50.000 0.00 0.00 0.00 3.07
6623 7049 2.307686 TCCACATAACAGGGGGAAGAAC 59.692 50.000 0.00 0.00 0.00 3.01
6664 7090 5.235616 TCACTGTTCTGAAACCGATAAACAC 59.764 40.000 0.00 0.00 34.28 3.32
6728 7190 2.680805 GCAACAGGGAATCTCGATCCAA 60.681 50.000 5.92 0.00 38.80 3.53
6773 7263 2.923020 GTCGCGTCGGTTTCCTTTATTA 59.077 45.455 5.77 0.00 0.00 0.98
6774 7264 1.728425 GTCGCGTCGGTTTCCTTTATT 59.272 47.619 5.77 0.00 0.00 1.40
6775 7265 1.067354 AGTCGCGTCGGTTTCCTTTAT 60.067 47.619 5.77 0.00 0.00 1.40
6816 7306 1.127343 CCAACCCTCTTTTGCCCAAA 58.873 50.000 0.00 0.00 0.00 3.28
6850 7340 6.306199 TGAACAGAAAGATGGATCCAAGAAA 58.694 36.000 20.67 0.00 0.00 2.52
6856 7346 5.353678 CAGACTTGAACAGAAAGATGGATCC 59.646 44.000 4.20 4.20 0.00 3.36
6884 7374 3.380320 GTGTTCCTGTTGCAGTTAAGGTT 59.620 43.478 6.10 0.00 0.00 3.50
6885 7375 2.949644 GTGTTCCTGTTGCAGTTAAGGT 59.050 45.455 6.10 0.00 0.00 3.50
6886 7376 3.214328 AGTGTTCCTGTTGCAGTTAAGG 58.786 45.455 0.00 0.00 0.00 2.69
6956 7446 3.430790 GGCCAATAAATTCAGAGCCCAAC 60.431 47.826 0.00 0.00 32.68 3.77
7000 7490 2.165998 GGACCAGCAGCAAAAGAGATT 58.834 47.619 0.00 0.00 0.00 2.40
7137 7634 6.633234 CCTCGCTGAGTTTAGTTTTTCTTTTC 59.367 38.462 5.15 0.00 0.00 2.29
7142 7781 5.465724 TCTTCCTCGCTGAGTTTAGTTTTTC 59.534 40.000 5.15 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.