Multiple sequence alignment - TraesCS4D01G212200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G212200 chr4D 100.000 3167 0 0 1 3167 365186811 365189977 0.000000e+00 5849.0
1 TraesCS4D01G212200 chr4D 84.372 915 83 24 947 1839 365399643 365398767 0.000000e+00 843.0
2 TraesCS4D01G212200 chr4D 98.990 396 4 0 2772 3167 50765757 50765362 0.000000e+00 710.0
3 TraesCS4D01G212200 chr4D 98.254 401 6 1 2767 3167 204701893 204701494 0.000000e+00 701.0
4 TraesCS4D01G212200 chr4D 89.918 486 37 5 1112 1597 365864993 365864520 1.610000e-172 616.0
5 TraesCS4D01G212200 chr4D 89.549 488 39 5 1112 1599 366219636 366219161 2.700000e-170 608.0
6 TraesCS4D01G212200 chr4D 88.889 486 36 9 1112 1597 365507105 365507572 1.640000e-162 582.0
7 TraesCS4D01G212200 chr4D 90.943 265 10 2 2163 2413 453518548 453518812 8.410000e-91 344.0
8 TraesCS4D01G212200 chr4D 76.853 661 105 33 69 724 365402033 365401416 2.350000e-86 329.0
9 TraesCS4D01G212200 chr4D 90.833 120 8 2 2012 2131 365398458 365398342 1.180000e-34 158.0
10 TraesCS4D01G212200 chr4D 90.476 84 6 2 873 956 365401317 365401236 3.340000e-20 110.0
11 TraesCS4D01G212200 chr4D 84.444 90 12 2 776 865 261792014 261792101 1.560000e-13 87.9
12 TraesCS4D01G212200 chr4A 91.552 1089 43 24 1046 2131 100551424 100550382 0.000000e+00 1456.0
13 TraesCS4D01G212200 chr4A 90.609 575 34 6 1098 1669 100187750 100188307 0.000000e+00 745.0
14 TraesCS4D01G212200 chr4A 89.754 488 41 2 1112 1599 98785516 98785994 1.610000e-172 616.0
15 TraesCS4D01G212200 chr4A 89.300 486 40 3 1112 1597 99005047 99005520 1.630000e-167 599.0
16 TraesCS4D01G212200 chr4A 88.272 486 39 8 1112 1597 99914182 99913715 1.650000e-157 566.0
17 TraesCS4D01G212200 chr4A 78.989 633 112 15 15 637 100552915 100552294 2.270000e-111 412.0
18 TraesCS4D01G212200 chr4A 92.063 126 9 1 873 998 100551618 100551494 3.250000e-40 176.0
19 TraesCS4D01G212200 chr4A 92.982 114 6 2 2019 2131 100188831 100188943 7.030000e-37 165.0
20 TraesCS4D01G212200 chr4A 73.043 575 84 36 69 639 100130948 100131455 1.530000e-28 137.0
21 TraesCS4D01G212200 chr4A 90.361 83 8 0 783 865 567488992 567488910 3.340000e-20 110.0
22 TraesCS4D01G212200 chr4A 88.764 89 10 0 780 868 743759385 743759297 3.340000e-20 110.0
23 TraesCS4D01G212200 chr4A 89.535 86 8 1 780 865 615029270 615029354 1.200000e-19 108.0
24 TraesCS4D01G212200 chr7D 96.066 610 9 3 2177 2771 543372566 543371957 0.000000e+00 979.0
25 TraesCS4D01G212200 chr7D 96.046 607 9 3 2177 2768 24469913 24470519 0.000000e+00 974.0
26 TraesCS4D01G212200 chr7D 95.895 609 11 5 2177 2771 583407007 583406399 0.000000e+00 974.0
27 TraesCS4D01G212200 chr7D 89.308 159 3 2 2175 2319 160858302 160858460 1.500000e-43 187.0
28 TraesCS4D01G212200 chr7D 86.667 90 11 1 780 868 350100566 350100477 7.230000e-17 99.0
29 TraesCS4D01G212200 chr5D 96.066 610 9 3 2178 2772 439426705 439427314 0.000000e+00 979.0
30 TraesCS4D01G212200 chr5D 96.059 609 9 3 2178 2771 420911580 420910972 0.000000e+00 977.0
31 TraesCS4D01G212200 chr5D 91.566 83 7 0 783 865 232418803 232418885 7.180000e-22 115.0
32 TraesCS4D01G212200 chr1D 96.059 609 10 2 2177 2771 460432352 460431744 0.000000e+00 979.0
33 TraesCS4D01G212200 chr1D 95.153 619 15 3 2165 2768 451270772 451271390 0.000000e+00 963.0
34 TraesCS4D01G212200 chr1D 95.380 606 18 6 2176 2771 483039157 483038552 0.000000e+00 955.0
35 TraesCS4D01G212200 chr1D 93.429 624 13 12 2173 2768 434810 435433 0.000000e+00 900.0
36 TraesCS4D01G212200 chr1D 98.992 397 4 0 2771 3167 333339425 333339821 0.000000e+00 712.0
37 TraesCS4D01G212200 chr1D 98.511 403 5 1 2766 3167 170073011 170072609 0.000000e+00 710.0
38 TraesCS4D01G212200 chr1D 98.747 399 5 0 2769 3167 408195674 408196072 0.000000e+00 710.0
39 TraesCS4D01G212200 chr1D 91.860 86 7 0 780 865 10293840 10293755 1.540000e-23 121.0
40 TraesCS4D01G212200 chr1D 85.542 83 12 0 783 865 364604706 364604624 1.560000e-13 87.9
41 TraesCS4D01G212200 chr2D 95.915 612 9 3 2176 2771 21047084 21046473 0.000000e+00 977.0
42 TraesCS4D01G212200 chr2D 95.417 611 12 4 2173 2768 15218557 15219166 0.000000e+00 959.0
43 TraesCS4D01G212200 chr2D 91.480 223 5 2 2174 2382 1605969 1605747 8.590000e-76 294.0
44 TraesCS4D01G212200 chr3D 95.353 624 12 5 2164 2771 13961638 13961016 0.000000e+00 976.0
45 TraesCS4D01G212200 chr3D 94.951 614 15 4 2173 2771 606562225 606561613 0.000000e+00 948.0
46 TraesCS4D01G212200 chr3D 93.523 633 14 8 2166 2771 572865918 572865286 0.000000e+00 917.0
47 TraesCS4D01G212200 chr3D 98.992 397 4 0 2771 3167 303327415 303327019 0.000000e+00 712.0
48 TraesCS4D01G212200 chr3D 97.573 412 7 3 2757 3167 524234323 524233914 0.000000e+00 702.0
49 TraesCS4D01G212200 chr3D 89.130 92 10 0 783 874 508186033 508185942 7.180000e-22 115.0
50 TraesCS4D01G212200 chr3D 85.882 85 11 1 781 865 288297408 288297325 4.350000e-14 89.8
51 TraesCS4D01G212200 chr6D 95.731 609 12 5 2177 2771 443121528 443120920 0.000000e+00 968.0
52 TraesCS4D01G212200 chr6D 99.242 396 3 0 2772 3167 54364621 54365016 0.000000e+00 715.0
53 TraesCS4D01G212200 chr6D 87.692 65 8 0 801 865 46624876 46624812 3.390000e-10 76.8
54 TraesCS4D01G212200 chr4B 85.730 897 75 22 1007 1882 449928238 449929102 0.000000e+00 898.0
55 TraesCS4D01G212200 chr4B 89.139 488 35 5 1112 1599 450686349 450685880 2.720000e-165 592.0
56 TraesCS4D01G212200 chr4B 89.027 483 34 4 1112 1594 450105729 450106192 5.890000e-162 580.0
57 TraesCS4D01G212200 chr4B 91.818 110 8 1 867 976 449928128 449928236 5.470000e-33 152.0
58 TraesCS4D01G212200 chr4B 90.000 110 9 2 615 724 449927923 449928030 1.180000e-29 141.0
59 TraesCS4D01G212200 chr4B 86.667 90 9 3 778 865 33639887 33639975 2.600000e-16 97.1
60 TraesCS4D01G212200 chr4B 84.211 76 12 0 782 857 654089288 654089363 1.220000e-09 75.0
61 TraesCS4D01G212200 chr4B 92.857 42 1 2 776 816 656264463 656264503 3.410000e-05 60.2
62 TraesCS4D01G212200 chrUn 98.747 399 5 0 2769 3167 268268655 268269053 0.000000e+00 710.0
63 TraesCS4D01G212200 chr7A 91.667 84 7 0 782 865 67676747 67676664 2.000000e-22 117.0
64 TraesCS4D01G212200 chr5B 90.000 90 9 0 776 865 69812779 69812690 2.000000e-22 117.0
65 TraesCS4D01G212200 chr3B 90.588 85 8 0 781 865 260430889 260430973 2.580000e-21 113.0
66 TraesCS4D01G212200 chr5A 89.655 87 8 1 779 865 633269789 633269704 3.340000e-20 110.0
67 TraesCS4D01G212200 chr5A 89.873 79 7 1 780 857 372158575 372158653 2.010000e-17 100.0
68 TraesCS4D01G212200 chr5A 87.952 83 10 0 783 865 46711401 46711483 7.230000e-17 99.0
69 TraesCS4D01G212200 chr1A 87.037 54 6 1 816 868 449840621 449840568 3.410000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G212200 chr4D 365186811 365189977 3166 False 5849.000000 5849 100.000000 1 3167 1 chr4D.!!$F2 3166
1 TraesCS4D01G212200 chr4D 365398342 365402033 3691 True 360.000000 843 85.633500 69 2131 4 chr4D.!!$R5 2062
2 TraesCS4D01G212200 chr4A 100550382 100552915 2533 True 681.333333 1456 87.534667 15 2131 3 chr4A.!!$R4 2116
3 TraesCS4D01G212200 chr4A 100187750 100188943 1193 False 455.000000 745 91.795500 1098 2131 2 chr4A.!!$F5 1033
4 TraesCS4D01G212200 chr7D 543371957 543372566 609 True 979.000000 979 96.066000 2177 2771 1 chr7D.!!$R2 594
5 TraesCS4D01G212200 chr7D 24469913 24470519 606 False 974.000000 974 96.046000 2177 2768 1 chr7D.!!$F1 591
6 TraesCS4D01G212200 chr7D 583406399 583407007 608 True 974.000000 974 95.895000 2177 2771 1 chr7D.!!$R3 594
7 TraesCS4D01G212200 chr5D 439426705 439427314 609 False 979.000000 979 96.066000 2178 2772 1 chr5D.!!$F2 594
8 TraesCS4D01G212200 chr5D 420910972 420911580 608 True 977.000000 977 96.059000 2178 2771 1 chr5D.!!$R1 593
9 TraesCS4D01G212200 chr1D 460431744 460432352 608 True 979.000000 979 96.059000 2177 2771 1 chr1D.!!$R4 594
10 TraesCS4D01G212200 chr1D 451270772 451271390 618 False 963.000000 963 95.153000 2165 2768 1 chr1D.!!$F4 603
11 TraesCS4D01G212200 chr1D 483038552 483039157 605 True 955.000000 955 95.380000 2176 2771 1 chr1D.!!$R5 595
12 TraesCS4D01G212200 chr1D 434810 435433 623 False 900.000000 900 93.429000 2173 2768 1 chr1D.!!$F1 595
13 TraesCS4D01G212200 chr2D 21046473 21047084 611 True 977.000000 977 95.915000 2176 2771 1 chr2D.!!$R2 595
14 TraesCS4D01G212200 chr2D 15218557 15219166 609 False 959.000000 959 95.417000 2173 2768 1 chr2D.!!$F1 595
15 TraesCS4D01G212200 chr3D 13961016 13961638 622 True 976.000000 976 95.353000 2164 2771 1 chr3D.!!$R1 607
16 TraesCS4D01G212200 chr3D 606561613 606562225 612 True 948.000000 948 94.951000 2173 2771 1 chr3D.!!$R7 598
17 TraesCS4D01G212200 chr3D 572865286 572865918 632 True 917.000000 917 93.523000 2166 2771 1 chr3D.!!$R6 605
18 TraesCS4D01G212200 chr6D 443120920 443121528 608 True 968.000000 968 95.731000 2177 2771 1 chr6D.!!$R2 594
19 TraesCS4D01G212200 chr4B 449927923 449929102 1179 False 397.000000 898 89.182667 615 1882 3 chr4B.!!$F5 1267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 417 0.036010 CGTTGCCTGTCCTGATCCTT 60.036 55.0 0.0 0.0 0.0 3.36 F
1781 4214 0.166814 GCATCGAGTCCAAAGTGTGC 59.833 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 4458 0.035317 ACAGAGTTTCCATGCTGCGA 59.965 50.0 0.0 0.0 31.74 5.10 R
3120 5789 0.035820 GGTATCCGGGAGTTGCACAA 60.036 55.0 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.816825 TCTAGCCCGTCGCGTTCTAT 60.817 55.000 5.77 0.00 44.76 1.98
29 30 2.310233 CGCGTTCTATGGATGGCCG 61.310 63.158 0.00 0.00 36.79 6.13
38 39 1.111116 ATGGATGGCCGGCATTTCAG 61.111 55.000 30.85 0.00 36.79 3.02
42 43 3.521796 GGCCGGCATTTCAGAGGC 61.522 66.667 30.85 1.84 46.51 4.70
45 46 3.093278 CGGCATTTCAGAGGCGTC 58.907 61.111 0.00 0.00 46.92 5.19
47 48 1.741770 GGCATTTCAGAGGCGTCGT 60.742 57.895 0.00 0.00 0.00 4.34
53 54 1.241165 TTCAGAGGCGTCGTTGACTA 58.759 50.000 0.00 0.00 0.00 2.59
55 56 0.798771 CAGAGGCGTCGTTGACTAGC 60.799 60.000 0.00 0.00 0.00 3.42
56 57 1.211969 GAGGCGTCGTTGACTAGCA 59.788 57.895 0.00 0.00 0.00 3.49
80 81 2.288640 GCTGCTTCAATGCCTTTTCACT 60.289 45.455 0.00 0.00 0.00 3.41
81 82 3.057315 GCTGCTTCAATGCCTTTTCACTA 60.057 43.478 0.00 0.00 0.00 2.74
87 88 3.751175 TCAATGCCTTTTCACTACCTTCG 59.249 43.478 0.00 0.00 0.00 3.79
88 89 1.519408 TGCCTTTTCACTACCTTCGC 58.481 50.000 0.00 0.00 0.00 4.70
90 91 1.076332 CCTTTTCACTACCTTCGCGG 58.924 55.000 6.13 0.00 39.35 6.46
101 102 4.108299 TTCGCGGGGCCATCACAT 62.108 61.111 6.13 0.00 0.00 3.21
142 143 0.753479 TCTCAGACGAGGAGGATGGC 60.753 60.000 0.00 0.00 39.95 4.40
182 183 4.969196 ACAGGCTGTGACGCACGG 62.969 66.667 21.37 12.63 43.00 4.94
187 188 3.022287 CTGTGACGCACGGCTTTT 58.978 55.556 0.00 0.00 37.14 2.27
190 191 2.203084 TGACGCACGGCTTTTCCA 60.203 55.556 0.00 0.00 34.01 3.53
233 234 3.285215 CTGCATGGATGGAGCGGC 61.285 66.667 0.00 0.00 39.36 6.53
247 248 4.099170 CGGCTGTGCTTCTGCTGC 62.099 66.667 0.00 0.00 39.70 5.25
264 265 3.784573 CCTCGAGGAGGGGCATAG 58.215 66.667 28.21 0.00 45.43 2.23
282 283 2.031919 GGCACCCACATGTCACGA 59.968 61.111 0.00 0.00 0.00 4.35
283 284 2.325082 GGCACCCACATGTCACGAC 61.325 63.158 0.00 0.00 0.00 4.34
291 292 0.762418 ACATGTCACGACCCCTTCAA 59.238 50.000 0.00 0.00 0.00 2.69
320 321 1.841302 TTGCTTCCAGATCGGCCACT 61.841 55.000 2.24 0.00 33.14 4.00
333 334 2.662596 CCACTGCGGCAAGACCTA 59.337 61.111 3.44 0.00 35.61 3.08
339 349 2.047655 CGGCAAGACCTACGCCAA 60.048 61.111 9.98 0.00 46.60 4.52
368 378 1.208052 CACCCAATCATCCTCTCGTGT 59.792 52.381 0.00 0.00 0.00 4.49
370 380 1.208052 CCCAATCATCCTCTCGTGTGT 59.792 52.381 0.00 0.00 0.00 3.72
371 381 2.430694 CCCAATCATCCTCTCGTGTGTA 59.569 50.000 0.00 0.00 0.00 2.90
373 383 3.491619 CCAATCATCCTCTCGTGTGTAGG 60.492 52.174 0.00 0.00 0.00 3.18
381 391 0.526662 CTCGTGTGTAGGTCACCTCC 59.473 60.000 0.00 0.00 45.61 4.30
389 399 2.888464 TAGGTCACCTCCGAGAGCCG 62.888 65.000 0.00 0.00 34.61 5.52
390 400 3.063084 GTCACCTCCGAGAGCCGT 61.063 66.667 0.00 0.00 36.31 5.68
395 405 3.764466 CTCCGAGAGCCGTTGCCT 61.764 66.667 0.00 0.00 38.69 4.75
407 417 0.036010 CGTTGCCTGTCCTGATCCTT 60.036 55.000 0.00 0.00 0.00 3.36
426 436 3.064945 TCGCAGAGCCGAGCTTCT 61.065 61.111 0.00 0.00 39.88 2.85
430 440 1.518133 CAGAGCCGAGCTTCTTCCG 60.518 63.158 0.00 0.00 39.88 4.30
433 443 2.005960 GAGCCGAGCTTCTTCCGCTA 62.006 60.000 0.00 0.00 39.88 4.26
440 450 1.511305 CTTCTTCCGCTACAGCCGA 59.489 57.895 0.00 0.00 37.91 5.54
466 476 0.458370 CGACTCCGCATGACATGTCA 60.458 55.000 29.67 29.67 44.59 3.58
485 495 4.554036 GGCTCAGGGATGCGGACC 62.554 72.222 0.00 0.00 0.00 4.46
486 496 3.785859 GCTCAGGGATGCGGACCA 61.786 66.667 0.00 0.00 0.00 4.02
487 497 3.112205 GCTCAGGGATGCGGACCAT 62.112 63.158 0.00 0.00 36.70 3.55
564 574 6.509317 ACACATTTCAAAATTGCAACTACG 57.491 33.333 0.00 0.00 0.00 3.51
566 576 4.987912 ACATTTCAAAATTGCAACTACGGG 59.012 37.500 0.00 0.00 0.00 5.28
580 590 5.278610 GCAACTACGGGTAAGGAAAAACAAT 60.279 40.000 0.00 0.00 0.00 2.71
599 609 2.472695 TCCAGGTAGTGTTGCACATC 57.527 50.000 2.01 0.00 36.74 3.06
690 1142 7.145932 AGGACTTCAAGATCATTTTAAACGG 57.854 36.000 0.00 0.00 0.00 4.44
694 1146 5.890424 TCAAGATCATTTTAAACGGGACC 57.110 39.130 0.00 0.00 0.00 4.46
695 1147 5.317808 TCAAGATCATTTTAAACGGGACCA 58.682 37.500 0.00 0.00 0.00 4.02
701 1153 7.602265 AGATCATTTTAAACGGGACCATTTTTG 59.398 33.333 0.00 0.00 0.00 2.44
709 1161 2.621055 CGGGACCATTTTTGTGAGACAA 59.379 45.455 0.00 0.00 36.11 3.18
772 1272 0.317938 CTAGAATTCCGGTCGGCTCG 60.318 60.000 0.00 0.00 34.68 5.03
778 1278 4.382320 CCGGTCGGCTCGGGAAAA 62.382 66.667 8.81 0.00 43.45 2.29
858 1358 8.914328 AAAAACGTTTTTATATTATGGGACGG 57.086 30.769 31.82 0.00 38.50 4.79
859 1359 7.628769 AAACGTTTTTATATTATGGGACGGT 57.371 32.000 7.96 0.00 33.95 4.83
860 1360 6.607735 ACGTTTTTATATTATGGGACGGTG 57.392 37.500 0.00 0.00 33.95 4.94
861 1361 5.528320 ACGTTTTTATATTATGGGACGGTGG 59.472 40.000 0.00 0.00 33.95 4.61
862 1362 5.049267 CGTTTTTATATTATGGGACGGTGGG 60.049 44.000 0.00 0.00 0.00 4.61
863 1363 5.908562 TTTTATATTATGGGACGGTGGGA 57.091 39.130 0.00 0.00 0.00 4.37
864 1364 5.492855 TTTATATTATGGGACGGTGGGAG 57.507 43.478 0.00 0.00 0.00 4.30
865 1365 1.724545 TATTATGGGACGGTGGGAGG 58.275 55.000 0.00 0.00 0.00 4.30
870 1370 2.657066 GGGACGGTGGGAGGAGAAC 61.657 68.421 0.00 0.00 0.00 3.01
871 1371 2.657066 GGACGGTGGGAGGAGAACC 61.657 68.421 0.00 0.00 0.00 3.62
898 1398 0.447406 TGACAATTTCATCTGCCGCG 59.553 50.000 0.00 0.00 0.00 6.46
939 1439 1.077787 CATAGGCCCAACGCTCCAA 60.078 57.895 0.00 0.00 37.74 3.53
967 3069 1.542915 CAGTTTCCAGCACATTCCAGG 59.457 52.381 0.00 0.00 0.00 4.45
976 3078 4.264253 CAGCACATTCCAGGATAGACAAA 58.736 43.478 0.00 0.00 0.00 2.83
977 3079 4.334759 CAGCACATTCCAGGATAGACAAAG 59.665 45.833 0.00 0.00 0.00 2.77
978 3080 4.225942 AGCACATTCCAGGATAGACAAAGA 59.774 41.667 0.00 0.00 0.00 2.52
979 3081 4.333926 GCACATTCCAGGATAGACAAAGAC 59.666 45.833 0.00 0.00 0.00 3.01
980 3082 4.568359 CACATTCCAGGATAGACAAAGACG 59.432 45.833 0.00 0.00 0.00 4.18
981 3083 2.961526 TCCAGGATAGACAAAGACGC 57.038 50.000 0.00 0.00 0.00 5.19
982 3084 2.457598 TCCAGGATAGACAAAGACGCT 58.542 47.619 0.00 0.00 0.00 5.07
983 3085 2.427453 TCCAGGATAGACAAAGACGCTC 59.573 50.000 0.00 0.00 0.00 5.03
984 3086 2.482142 CCAGGATAGACAAAGACGCTCC 60.482 54.545 0.00 0.00 0.00 4.70
985 3087 2.166459 CAGGATAGACAAAGACGCTCCA 59.834 50.000 0.00 0.00 0.00 3.86
986 3088 2.428890 AGGATAGACAAAGACGCTCCAG 59.571 50.000 0.00 0.00 0.00 3.86
987 3089 2.427453 GGATAGACAAAGACGCTCCAGA 59.573 50.000 0.00 0.00 0.00 3.86
988 3090 3.440228 GATAGACAAAGACGCTCCAGAC 58.560 50.000 0.00 0.00 0.00 3.51
989 3091 0.318762 AGACAAAGACGCTCCAGACC 59.681 55.000 0.00 0.00 0.00 3.85
990 3092 0.670854 GACAAAGACGCTCCAGACCC 60.671 60.000 0.00 0.00 0.00 4.46
991 3093 1.376037 CAAAGACGCTCCAGACCCC 60.376 63.158 0.00 0.00 0.00 4.95
992 3094 1.536662 AAAGACGCTCCAGACCCCT 60.537 57.895 0.00 0.00 0.00 4.79
993 3095 1.545706 AAAGACGCTCCAGACCCCTC 61.546 60.000 0.00 0.00 0.00 4.30
994 3096 3.827898 GACGCTCCAGACCCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
1001 3103 4.436998 CAGACCCCTCGCCGTCAC 62.437 72.222 0.00 0.00 0.00 3.67
1036 3202 4.621034 AGTGAAACAACGAAAAGCAAACAG 59.379 37.500 0.00 0.00 41.43 3.16
1466 3644 3.659092 CGGCAAGTTCCTGCGCAA 61.659 61.111 13.05 0.00 43.60 4.85
1533 3711 2.049063 GAGAACGGCGTGCTCACT 60.049 61.111 36.71 20.06 38.09 3.41
1536 3714 2.203015 AACGGCGTGCTCACTGTT 60.203 55.556 15.70 0.00 0.00 3.16
1578 3756 0.832135 AGAAGCCCGAGGTCAAGTCA 60.832 55.000 0.00 0.00 0.00 3.41
1632 3810 3.081804 AGGTTAAGGTTCAATTCGCTGG 58.918 45.455 0.00 0.00 0.00 4.85
1739 4007 2.513259 TTCAACGCCCGTCTCCCTT 61.513 57.895 0.00 0.00 0.00 3.95
1744 4012 1.294138 CGCCCGTCTCCCTTGTTAA 59.706 57.895 0.00 0.00 0.00 2.01
1745 4013 0.739813 CGCCCGTCTCCCTTGTTAAG 60.740 60.000 0.00 0.00 0.00 1.85
1746 4014 0.323957 GCCCGTCTCCCTTGTTAAGT 59.676 55.000 0.00 0.00 0.00 2.24
1747 4015 1.675116 GCCCGTCTCCCTTGTTAAGTC 60.675 57.143 0.00 0.00 0.00 3.01
1748 4016 1.621814 CCCGTCTCCCTTGTTAAGTCA 59.378 52.381 0.00 0.00 0.00 3.41
1749 4017 2.236395 CCCGTCTCCCTTGTTAAGTCAT 59.764 50.000 0.00 0.00 0.00 3.06
1750 4018 3.262420 CCGTCTCCCTTGTTAAGTCATG 58.738 50.000 0.00 0.00 0.00 3.07
1751 4019 3.306780 CCGTCTCCCTTGTTAAGTCATGT 60.307 47.826 0.00 0.00 0.00 3.21
1752 4020 4.081862 CCGTCTCCCTTGTTAAGTCATGTA 60.082 45.833 0.00 0.00 0.00 2.29
1760 4193 6.238103 CCCTTGTTAAGTCATGTAGTAATGCG 60.238 42.308 0.00 0.00 0.00 4.73
1781 4214 0.166814 GCATCGAGTCCAAAGTGTGC 59.833 55.000 0.00 0.00 0.00 4.57
1834 4287 0.318784 AACGAGCGAGTCACAGTTCC 60.319 55.000 0.00 0.00 0.00 3.62
2010 4649 1.609208 AGAAACTCTGGCAAACGCAT 58.391 45.000 0.00 0.00 0.00 4.73
2015 4654 1.159285 CTCTGGCAAACGCATCAGAA 58.841 50.000 0.00 0.00 36.06 3.02
2016 4655 0.874390 TCTGGCAAACGCATCAGAAC 59.126 50.000 0.00 0.00 33.87 3.01
2017 4656 0.877071 CTGGCAAACGCATCAGAACT 59.123 50.000 0.00 0.00 0.00 3.01
2036 4675 3.539604 ACTACTAGTACGCACCTTCGAT 58.460 45.455 0.00 0.00 0.00 3.59
2066 4706 5.404366 CGAGTATTTCTTTCCAAAGACACGA 59.596 40.000 1.04 0.00 44.18 4.35
2092 4732 5.533903 AGAACTGCTGTGATTTCATTGAAGT 59.466 36.000 0.00 0.00 0.00 3.01
2126 4766 2.369532 TCGGCCAAGTACAGGTTAACTT 59.630 45.455 2.24 0.00 36.38 2.66
2131 4771 6.238703 CGGCCAAGTACAGGTTAACTTAAAAA 60.239 38.462 2.24 0.00 34.23 1.94
2132 4772 7.522562 CGGCCAAGTACAGGTTAACTTAAAAAT 60.523 37.037 2.24 0.00 34.23 1.82
2133 4773 8.795513 GGCCAAGTACAGGTTAACTTAAAAATA 58.204 33.333 5.42 0.00 34.23 1.40
2138 4778 9.300681 AGTACAGGTTAACTTAAAAATAACCCC 57.699 33.333 15.14 6.34 46.30 4.95
2139 4779 9.300681 GTACAGGTTAACTTAAAAATAACCCCT 57.699 33.333 15.14 7.49 46.30 4.79
2140 4780 8.413309 ACAGGTTAACTTAAAAATAACCCCTC 57.587 34.615 15.14 0.00 46.30 4.30
2141 4781 7.452501 ACAGGTTAACTTAAAAATAACCCCTCC 59.547 37.037 15.14 0.00 46.30 4.30
2142 4782 7.452189 CAGGTTAACTTAAAAATAACCCCTCCA 59.548 37.037 15.14 0.00 46.30 3.86
2143 4783 8.181524 AGGTTAACTTAAAAATAACCCCTCCAT 58.818 33.333 15.14 0.62 46.30 3.41
2144 4784 9.478238 GGTTAACTTAAAAATAACCCCTCCATA 57.522 33.333 5.42 0.00 41.67 2.74
2147 4787 7.949690 ACTTAAAAATAACCCCTCCATACAC 57.050 36.000 0.00 0.00 0.00 2.90
2148 4788 7.705700 ACTTAAAAATAACCCCTCCATACACT 58.294 34.615 0.00 0.00 0.00 3.55
2149 4789 8.174757 ACTTAAAAATAACCCCTCCATACACTT 58.825 33.333 0.00 0.00 0.00 3.16
2150 4790 8.959676 TTAAAAATAACCCCTCCATACACTTT 57.040 30.769 0.00 0.00 0.00 2.66
2152 4792 8.959676 AAAAATAACCCCTCCATACACTTTAA 57.040 30.769 0.00 0.00 0.00 1.52
2153 4793 8.959676 AAAATAACCCCTCCATACACTTTAAA 57.040 30.769 0.00 0.00 0.00 1.52
2154 4794 8.959676 AAATAACCCCTCCATACACTTTAAAA 57.040 30.769 0.00 0.00 0.00 1.52
2155 4795 9.555411 AAATAACCCCTCCATACACTTTAAAAT 57.445 29.630 0.00 0.00 0.00 1.82
2156 4796 9.555411 AATAACCCCTCCATACACTTTAAAATT 57.445 29.630 0.00 0.00 0.00 1.82
2157 4797 7.865530 AACCCCTCCATACACTTTAAAATTT 57.134 32.000 0.00 0.00 0.00 1.82
2158 4798 7.239763 ACCCCTCCATACACTTTAAAATTTG 57.760 36.000 0.00 0.00 0.00 2.32
2159 4799 6.785466 ACCCCTCCATACACTTTAAAATTTGT 59.215 34.615 0.00 0.00 0.00 2.83
2160 4800 7.291416 ACCCCTCCATACACTTTAAAATTTGTT 59.709 33.333 0.00 0.00 0.00 2.83
2161 4801 8.808092 CCCCTCCATACACTTTAAAATTTGTTA 58.192 33.333 0.00 0.00 0.00 2.41
2216 4857 3.004126 TCCATATGCCCCCATTAGTCT 57.996 47.619 0.00 0.00 32.85 3.24
2335 4989 0.906775 CTTTAGTCCCGGTTGGCCTA 59.093 55.000 3.32 0.00 0.00 3.93
2539 5208 0.449388 GCCCGAGAGCATGAAACAAG 59.551 55.000 0.00 0.00 0.00 3.16
2772 5441 1.119684 TGGATGTACGGTCCCTGATG 58.880 55.000 12.94 0.00 34.76 3.07
2773 5442 1.120530 GGATGTACGGTCCCTGATGT 58.879 55.000 5.95 0.00 0.00 3.06
2774 5443 1.485066 GGATGTACGGTCCCTGATGTT 59.515 52.381 5.95 0.00 0.00 2.71
2775 5444 2.550978 GATGTACGGTCCCTGATGTTG 58.449 52.381 0.00 0.00 0.00 3.33
2776 5445 0.611200 TGTACGGTCCCTGATGTTGG 59.389 55.000 0.00 0.00 0.00 3.77
2777 5446 0.899720 GTACGGTCCCTGATGTTGGA 59.100 55.000 0.00 0.00 0.00 3.53
2778 5447 1.276989 GTACGGTCCCTGATGTTGGAA 59.723 52.381 0.00 0.00 31.03 3.53
2779 5448 0.768622 ACGGTCCCTGATGTTGGAAA 59.231 50.000 0.00 0.00 31.03 3.13
2780 5449 1.354368 ACGGTCCCTGATGTTGGAAAT 59.646 47.619 0.00 0.00 31.03 2.17
2781 5450 2.574369 ACGGTCCCTGATGTTGGAAATA 59.426 45.455 0.00 0.00 31.03 1.40
2782 5451 3.202151 ACGGTCCCTGATGTTGGAAATAT 59.798 43.478 0.00 0.00 31.03 1.28
2783 5452 3.565482 CGGTCCCTGATGTTGGAAATATG 59.435 47.826 0.00 0.00 31.03 1.78
2784 5453 3.319122 GGTCCCTGATGTTGGAAATATGC 59.681 47.826 0.00 0.00 31.03 3.14
2785 5454 3.319122 GTCCCTGATGTTGGAAATATGCC 59.681 47.826 0.00 0.00 31.03 4.40
2786 5455 2.629617 CCCTGATGTTGGAAATATGCCC 59.370 50.000 0.00 0.00 0.00 5.36
2787 5456 3.569491 CCTGATGTTGGAAATATGCCCT 58.431 45.455 0.00 0.00 0.00 5.19
2788 5457 4.447616 CCCTGATGTTGGAAATATGCCCTA 60.448 45.833 0.00 0.00 0.00 3.53
2789 5458 4.763793 CCTGATGTTGGAAATATGCCCTAG 59.236 45.833 0.00 0.00 0.00 3.02
2790 5459 5.456619 CCTGATGTTGGAAATATGCCCTAGA 60.457 44.000 0.00 0.00 0.00 2.43
2791 5460 5.624159 TGATGTTGGAAATATGCCCTAGAG 58.376 41.667 0.00 0.00 0.00 2.43
2792 5461 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
2808 5477 7.839680 CCCTAGAGGCAATAATAAATTGGTT 57.160 36.000 0.00 0.00 0.00 3.67
2809 5478 8.934023 CCCTAGAGGCAATAATAAATTGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
2810 5479 9.533831 CCCTAGAGGCAATAATAAATTGGTTAT 57.466 33.333 0.00 0.00 33.58 1.89
2841 5510 9.927668 ATATTTCCTTGTTCATGAAAATCGTTT 57.072 25.926 10.35 0.00 32.29 3.60
2843 5512 9.927668 ATTTCCTTGTTCATGAAAATCGTTTAT 57.072 25.926 10.35 0.00 32.29 1.40
2844 5513 9.757227 TTTCCTTGTTCATGAAAATCGTTTATT 57.243 25.926 10.35 0.00 0.00 1.40
2876 5545 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
2877 5546 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
2885 5554 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
2886 5555 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
2887 5556 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
2888 5557 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
2889 5558 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
2890 5559 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
2891 5560 4.532126 AGGAAACTCAGATACATGTGTGGA 59.468 41.667 9.11 1.00 32.90 4.02
2892 5561 5.190528 AGGAAACTCAGATACATGTGTGGAT 59.809 40.000 9.11 0.00 32.90 3.41
2893 5562 6.384015 AGGAAACTCAGATACATGTGTGGATA 59.616 38.462 9.11 0.00 32.90 2.59
2894 5563 6.480320 GGAAACTCAGATACATGTGTGGATAC 59.520 42.308 9.11 0.00 0.00 2.24
2910 5579 5.692115 TGGATACATAGACAACACCATGT 57.308 39.130 0.00 0.00 46.17 3.21
2911 5580 5.670485 TGGATACATAGACAACACCATGTC 58.330 41.667 0.00 0.00 45.97 3.06
2912 5581 5.396324 TGGATACATAGACAACACCATGTCC 60.396 44.000 3.95 0.00 46.44 4.02
2913 5582 8.319752 TGGATACATAGACAACACCATGTCCC 62.320 46.154 3.95 0.00 46.44 4.46
2919 5588 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
2920 5589 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
2921 5590 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
2922 5591 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
2923 5592 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
2924 5593 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
2925 5594 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
2926 5595 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
2927 5596 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
2928 5597 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
2929 5598 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
2930 5599 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
2931 5600 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
2932 5601 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
2933 5602 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
2934 5603 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
2935 5604 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
2936 5605 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
2937 5606 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
2938 5607 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
2939 5608 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
2940 5609 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
2941 5610 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
2942 5611 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
2943 5612 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
2944 5613 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
2945 5614 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
2946 5615 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
2947 5616 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
2948 5617 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
2949 5618 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
2950 5619 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
2951 5620 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
2952 5621 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
2953 5622 6.442112 TGACTAGCTCGTTGATCAATAGATG 58.558 40.000 19.51 12.48 33.72 2.90
2954 5623 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
2955 5624 4.679373 AGCTCGTTGATCAATAGATGGT 57.321 40.909 19.51 14.02 33.72 3.55
2956 5625 5.028549 AGCTCGTTGATCAATAGATGGTT 57.971 39.130 19.51 6.05 33.72 3.67
2957 5626 6.161855 AGCTCGTTGATCAATAGATGGTTA 57.838 37.500 19.51 0.00 33.72 2.85
2958 5627 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
2959 5628 5.107837 GCTCGTTGATCAATAGATGGTTACG 60.108 44.000 19.51 12.22 33.72 3.18
2960 5629 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
2961 5630 5.047847 CGTTGATCAATAGATGGTTACGGT 58.952 41.667 12.12 0.00 33.72 4.83
2962 5631 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
2963 5632 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
2964 5633 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
2965 5634 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
2966 5635 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
2967 5636 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
2968 5637 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
2969 5638 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
2970 5639 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
2971 5640 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
2972 5641 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
2973 5642 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
2974 5643 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
2975 5644 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
2976 5645 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
2977 5646 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
2978 5647 1.340017 CGGTTTCCTGACCATGGACAT 60.340 52.381 21.47 0.00 39.78 3.06
2979 5648 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
2980 5649 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
2981 5650 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
2982 5651 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
2983 5652 2.207988 TCCTGACCATGGACATTGGAT 58.792 47.619 21.47 0.00 0.00 3.41
2984 5653 2.092267 TCCTGACCATGGACATTGGATG 60.092 50.000 21.47 5.31 0.00 3.51
3012 5681 8.012151 GTTGATAACGAGATCACATCATTAGG 57.988 38.462 0.00 0.00 35.56 2.69
3013 5682 7.524717 TGATAACGAGATCACATCATTAGGA 57.475 36.000 0.00 0.00 30.75 2.94
3014 5683 7.597386 TGATAACGAGATCACATCATTAGGAG 58.403 38.462 0.00 0.00 30.75 3.69
3015 5684 7.448469 TGATAACGAGATCACATCATTAGGAGA 59.552 37.037 0.00 0.00 30.75 3.71
3016 5685 6.471233 AACGAGATCACATCATTAGGAGAA 57.529 37.500 0.00 0.00 0.00 2.87
3017 5686 6.662865 ACGAGATCACATCATTAGGAGAAT 57.337 37.500 0.00 0.00 0.00 2.40
3018 5687 6.453943 ACGAGATCACATCATTAGGAGAATG 58.546 40.000 0.00 0.00 0.00 2.67
3019 5688 6.266330 ACGAGATCACATCATTAGGAGAATGA 59.734 38.462 2.66 2.66 40.50 2.57
3020 5689 7.039152 ACGAGATCACATCATTAGGAGAATGAT 60.039 37.037 6.90 6.90 45.40 2.45
3029 5698 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
3030 5699 7.567458 TCATTAGGAGAATGATGTGATTGACA 58.433 34.615 0.00 0.00 39.53 3.58
3031 5700 8.048514 TCATTAGGAGAATGATGTGATTGACAA 58.951 33.333 0.00 0.00 38.36 3.18
3032 5701 7.854557 TTAGGAGAATGATGTGATTGACAAG 57.145 36.000 0.00 0.00 38.36 3.16
3033 5702 6.058553 AGGAGAATGATGTGATTGACAAGA 57.941 37.500 0.00 0.00 38.36 3.02
3034 5703 5.879223 AGGAGAATGATGTGATTGACAAGAC 59.121 40.000 0.00 0.00 38.36 3.01
3035 5704 5.065731 GGAGAATGATGTGATTGACAAGACC 59.934 44.000 0.00 0.00 38.36 3.85
3036 5705 4.946157 AGAATGATGTGATTGACAAGACCC 59.054 41.667 0.00 0.00 38.36 4.46
3037 5706 3.786368 TGATGTGATTGACAAGACCCA 57.214 42.857 0.00 0.00 38.36 4.51
3038 5707 4.097551 TGATGTGATTGACAAGACCCAA 57.902 40.909 0.00 0.00 38.36 4.12
3039 5708 4.665451 TGATGTGATTGACAAGACCCAAT 58.335 39.130 0.00 0.00 38.36 3.16
3040 5709 4.701651 TGATGTGATTGACAAGACCCAATC 59.298 41.667 0.00 0.00 45.28 2.67
3041 5710 3.420893 TGTGATTGACAAGACCCAATCC 58.579 45.455 11.18 5.22 44.76 3.01
3042 5711 3.074390 TGTGATTGACAAGACCCAATCCT 59.926 43.478 11.18 0.00 44.76 3.24
3043 5712 4.288366 TGTGATTGACAAGACCCAATCCTA 59.712 41.667 11.18 0.47 44.76 2.94
3044 5713 5.222027 TGTGATTGACAAGACCCAATCCTAA 60.222 40.000 11.18 0.00 44.76 2.69
3045 5714 5.355350 GTGATTGACAAGACCCAATCCTAAG 59.645 44.000 11.18 0.00 44.76 2.18
3046 5715 3.350219 TGACAAGACCCAATCCTAAGC 57.650 47.619 0.00 0.00 0.00 3.09
3047 5716 2.026262 TGACAAGACCCAATCCTAAGCC 60.026 50.000 0.00 0.00 0.00 4.35
3048 5717 2.239907 GACAAGACCCAATCCTAAGCCT 59.760 50.000 0.00 0.00 0.00 4.58
3049 5718 3.454812 GACAAGACCCAATCCTAAGCCTA 59.545 47.826 0.00 0.00 0.00 3.93
3050 5719 3.456277 ACAAGACCCAATCCTAAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
3051 5720 2.050918 AGACCCAATCCTAAGCCTAGC 58.949 52.381 0.00 0.00 0.00 3.42
3052 5721 1.768870 GACCCAATCCTAAGCCTAGCA 59.231 52.381 0.00 0.00 0.00 3.49
3053 5722 1.490910 ACCCAATCCTAAGCCTAGCAC 59.509 52.381 0.00 0.00 0.00 4.40
3054 5723 1.490490 CCCAATCCTAAGCCTAGCACA 59.510 52.381 0.00 0.00 0.00 4.57
3055 5724 2.092429 CCCAATCCTAAGCCTAGCACAA 60.092 50.000 0.00 0.00 0.00 3.33
3056 5725 3.209410 CCAATCCTAAGCCTAGCACAAG 58.791 50.000 0.00 0.00 0.00 3.16
3057 5726 3.118261 CCAATCCTAAGCCTAGCACAAGA 60.118 47.826 0.00 0.00 0.00 3.02
3058 5727 4.445448 CCAATCCTAAGCCTAGCACAAGAT 60.445 45.833 0.00 0.00 0.00 2.40
3059 5728 4.615588 ATCCTAAGCCTAGCACAAGATC 57.384 45.455 0.00 0.00 0.00 2.75
3060 5729 2.362397 TCCTAAGCCTAGCACAAGATCG 59.638 50.000 0.00 0.00 0.00 3.69
3061 5730 2.101582 CCTAAGCCTAGCACAAGATCGT 59.898 50.000 0.00 0.00 0.00 3.73
3062 5731 2.015736 AAGCCTAGCACAAGATCGTG 57.984 50.000 7.13 7.13 40.00 4.35
3063 5732 0.898320 AGCCTAGCACAAGATCGTGT 59.102 50.000 8.60 8.60 39.19 4.49
3064 5733 2.100197 AGCCTAGCACAAGATCGTGTA 58.900 47.619 14.10 0.00 39.19 2.90
3065 5734 2.099921 AGCCTAGCACAAGATCGTGTAG 59.900 50.000 14.10 8.32 39.19 2.74
3066 5735 2.159226 GCCTAGCACAAGATCGTGTAGT 60.159 50.000 14.10 7.07 39.19 2.73
3067 5736 3.676324 GCCTAGCACAAGATCGTGTAGTT 60.676 47.826 14.10 9.24 39.19 2.24
3068 5737 4.106197 CCTAGCACAAGATCGTGTAGTTC 58.894 47.826 14.10 4.56 39.19 3.01
3069 5738 2.596452 AGCACAAGATCGTGTAGTTCG 58.404 47.619 14.10 3.06 39.19 3.95
3070 5739 2.030185 AGCACAAGATCGTGTAGTTCGT 60.030 45.455 14.10 0.00 39.19 3.85
3071 5740 2.729882 GCACAAGATCGTGTAGTTCGTT 59.270 45.455 14.10 0.00 39.19 3.85
3072 5741 3.183775 GCACAAGATCGTGTAGTTCGTTT 59.816 43.478 14.10 0.00 39.19 3.60
3073 5742 4.688063 CACAAGATCGTGTAGTTCGTTTG 58.312 43.478 14.10 0.00 32.00 2.93
3074 5743 3.183775 ACAAGATCGTGTAGTTCGTTTGC 59.816 43.478 12.88 0.00 0.00 3.68
3075 5744 3.299340 AGATCGTGTAGTTCGTTTGCT 57.701 42.857 0.00 0.00 0.00 3.91
3076 5745 3.243336 AGATCGTGTAGTTCGTTTGCTC 58.757 45.455 0.00 0.00 0.00 4.26
3077 5746 2.495409 TCGTGTAGTTCGTTTGCTCA 57.505 45.000 0.00 0.00 0.00 4.26
3078 5747 2.390938 TCGTGTAGTTCGTTTGCTCAG 58.609 47.619 0.00 0.00 0.00 3.35
3079 5748 2.033675 TCGTGTAGTTCGTTTGCTCAGA 59.966 45.455 0.00 0.00 0.00 3.27
3080 5749 2.405357 CGTGTAGTTCGTTTGCTCAGAG 59.595 50.000 0.00 0.00 0.00 3.35
3081 5750 2.155924 GTGTAGTTCGTTTGCTCAGAGC 59.844 50.000 16.21 16.21 42.82 4.09
3082 5751 2.035961 TGTAGTTCGTTTGCTCAGAGCT 59.964 45.455 23.15 2.91 42.97 4.09
3083 5752 2.246719 AGTTCGTTTGCTCAGAGCTT 57.753 45.000 23.15 0.00 42.97 3.74
3084 5753 2.565841 AGTTCGTTTGCTCAGAGCTTT 58.434 42.857 23.15 0.00 42.97 3.51
3085 5754 2.945668 AGTTCGTTTGCTCAGAGCTTTT 59.054 40.909 23.15 0.00 42.97 2.27
3086 5755 3.002759 AGTTCGTTTGCTCAGAGCTTTTC 59.997 43.478 23.15 9.98 42.97 2.29
3087 5756 2.838736 TCGTTTGCTCAGAGCTTTTCT 58.161 42.857 23.15 0.00 42.97 2.52
3088 5757 3.990092 TCGTTTGCTCAGAGCTTTTCTA 58.010 40.909 23.15 0.00 42.97 2.10
3089 5758 4.377021 TCGTTTGCTCAGAGCTTTTCTAA 58.623 39.130 23.15 5.26 42.97 2.10
3090 5759 4.997395 TCGTTTGCTCAGAGCTTTTCTAAT 59.003 37.500 23.15 0.00 42.97 1.73
3091 5760 5.084722 CGTTTGCTCAGAGCTTTTCTAATG 58.915 41.667 23.15 9.11 42.97 1.90
3092 5761 5.334414 CGTTTGCTCAGAGCTTTTCTAATGT 60.334 40.000 23.15 0.00 42.97 2.71
3093 5762 5.869753 TTGCTCAGAGCTTTTCTAATGTC 57.130 39.130 23.15 0.00 42.97 3.06
3094 5763 4.898320 TGCTCAGAGCTTTTCTAATGTCA 58.102 39.130 23.15 0.00 42.97 3.58
3095 5764 5.308014 TGCTCAGAGCTTTTCTAATGTCAA 58.692 37.500 23.15 0.00 42.97 3.18
3096 5765 5.410746 TGCTCAGAGCTTTTCTAATGTCAAG 59.589 40.000 23.15 0.00 42.97 3.02
3097 5766 5.411053 GCTCAGAGCTTTTCTAATGTCAAGT 59.589 40.000 15.78 0.00 38.45 3.16
3098 5767 6.591834 GCTCAGAGCTTTTCTAATGTCAAGTA 59.408 38.462 15.78 0.00 38.45 2.24
3099 5768 7.279758 GCTCAGAGCTTTTCTAATGTCAAGTAT 59.720 37.037 15.78 0.00 38.45 2.12
3100 5769 8.709386 TCAGAGCTTTTCTAATGTCAAGTATC 57.291 34.615 0.00 0.00 33.83 2.24
3101 5770 8.314021 TCAGAGCTTTTCTAATGTCAAGTATCA 58.686 33.333 0.00 0.00 33.83 2.15
3102 5771 9.107177 CAGAGCTTTTCTAATGTCAAGTATCAT 57.893 33.333 0.00 0.00 33.83 2.45
3103 5772 9.678260 AGAGCTTTTCTAATGTCAAGTATCATT 57.322 29.630 0.00 0.00 37.85 2.57
3106 5775 9.508567 GCTTTTCTAATGTCAAGTATCATTTCC 57.491 33.333 0.00 0.00 36.06 3.13
3113 5782 8.738645 AATGTCAAGTATCATTTCCTTAGACC 57.261 34.615 0.00 0.00 31.35 3.85
3114 5783 7.252612 TGTCAAGTATCATTTCCTTAGACCA 57.747 36.000 0.00 0.00 0.00 4.02
3115 5784 7.861629 TGTCAAGTATCATTTCCTTAGACCAT 58.138 34.615 0.00 0.00 0.00 3.55
3116 5785 7.770433 TGTCAAGTATCATTTCCTTAGACCATG 59.230 37.037 0.00 0.00 0.00 3.66
3117 5786 7.987458 GTCAAGTATCATTTCCTTAGACCATGA 59.013 37.037 0.00 0.00 0.00 3.07
3118 5787 8.206867 TCAAGTATCATTTCCTTAGACCATGAG 58.793 37.037 0.00 0.00 29.44 2.90
3119 5788 7.921041 AGTATCATTTCCTTAGACCATGAGA 57.079 36.000 0.00 0.00 29.44 3.27
3120 5789 8.503428 AGTATCATTTCCTTAGACCATGAGAT 57.497 34.615 0.00 0.00 29.44 2.75
3121 5790 8.943085 AGTATCATTTCCTTAGACCATGAGATT 58.057 33.333 0.00 0.00 29.44 2.40
3122 5791 8.997323 GTATCATTTCCTTAGACCATGAGATTG 58.003 37.037 0.00 0.00 29.44 2.67
3123 5792 6.962182 TCATTTCCTTAGACCATGAGATTGT 58.038 36.000 0.00 0.00 0.00 2.71
3124 5793 6.825213 TCATTTCCTTAGACCATGAGATTGTG 59.175 38.462 0.00 0.00 0.00 3.33
3125 5794 4.142609 TCCTTAGACCATGAGATTGTGC 57.857 45.455 0.00 0.00 0.00 4.57
3126 5795 3.519107 TCCTTAGACCATGAGATTGTGCA 59.481 43.478 0.00 0.00 0.00 4.57
3127 5796 4.019411 TCCTTAGACCATGAGATTGTGCAA 60.019 41.667 0.00 0.00 0.00 4.08
3128 5797 4.095483 CCTTAGACCATGAGATTGTGCAAC 59.905 45.833 0.00 0.00 37.35 4.17
3129 5798 3.430042 AGACCATGAGATTGTGCAACT 57.570 42.857 0.00 0.00 38.04 3.16
3130 5799 3.341823 AGACCATGAGATTGTGCAACTC 58.658 45.455 0.00 0.00 38.04 3.01
3131 5800 2.421424 GACCATGAGATTGTGCAACTCC 59.579 50.000 0.00 0.00 38.04 3.85
3132 5801 1.747355 CCATGAGATTGTGCAACTCCC 59.253 52.381 0.00 0.00 38.04 4.30
3133 5802 1.399440 CATGAGATTGTGCAACTCCCG 59.601 52.381 0.00 0.00 38.04 5.14
3134 5803 0.321564 TGAGATTGTGCAACTCCCGG 60.322 55.000 0.00 0.00 38.04 5.73
3135 5804 0.036388 GAGATTGTGCAACTCCCGGA 60.036 55.000 0.73 0.00 38.04 5.14
3136 5805 0.620556 AGATTGTGCAACTCCCGGAT 59.379 50.000 0.73 0.00 38.04 4.18
3137 5806 1.837439 AGATTGTGCAACTCCCGGATA 59.163 47.619 0.73 0.00 38.04 2.59
3138 5807 1.940613 GATTGTGCAACTCCCGGATAC 59.059 52.381 0.73 0.00 38.04 2.24
3139 5808 0.035820 TTGTGCAACTCCCGGATACC 60.036 55.000 0.73 0.00 38.04 2.73
3140 5809 2.233605 TGTGCAACTCCCGGATACCG 62.234 60.000 0.73 3.03 42.30 4.02
3141 5810 1.985662 TGCAACTCCCGGATACCGT 60.986 57.895 0.73 0.00 46.80 4.83
3142 5811 0.683828 TGCAACTCCCGGATACCGTA 60.684 55.000 0.73 0.00 46.80 4.02
3143 5812 0.031721 GCAACTCCCGGATACCGTAG 59.968 60.000 0.73 8.43 46.80 3.51
3158 5827 1.821216 CGTAGGAATGCTTTGGGTGT 58.179 50.000 0.00 0.00 0.00 4.16
3159 5828 2.980568 CGTAGGAATGCTTTGGGTGTA 58.019 47.619 0.00 0.00 0.00 2.90
3160 5829 2.676342 CGTAGGAATGCTTTGGGTGTAC 59.324 50.000 0.00 0.00 0.00 2.90
3161 5830 2.215942 AGGAATGCTTTGGGTGTACC 57.784 50.000 0.00 0.00 40.81 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.816825 ATAGAACGCGACGGGCTAGA 60.817 55.000 15.93 0.00 40.44 2.43
2 3 0.660595 CATAGAACGCGACGGGCTAG 60.661 60.000 15.93 0.00 40.44 3.42
3 4 1.357690 CATAGAACGCGACGGGCTA 59.642 57.895 15.93 6.86 40.44 3.93
4 5 2.104331 CATAGAACGCGACGGGCT 59.896 61.111 15.93 0.00 40.44 5.19
5 6 2.694829 ATCCATAGAACGCGACGGGC 62.695 60.000 15.93 0.00 38.69 6.13
6 7 0.939577 CATCCATAGAACGCGACGGG 60.940 60.000 15.93 10.72 0.00 5.28
7 8 0.939577 CCATCCATAGAACGCGACGG 60.940 60.000 15.93 3.32 0.00 4.79
8 9 1.548973 GCCATCCATAGAACGCGACG 61.549 60.000 15.93 0.00 0.00 5.12
9 10 1.222115 GGCCATCCATAGAACGCGAC 61.222 60.000 15.93 6.52 0.00 5.19
10 11 1.069090 GGCCATCCATAGAACGCGA 59.931 57.895 15.93 0.00 0.00 5.87
11 12 2.310233 CGGCCATCCATAGAACGCG 61.310 63.158 3.53 3.53 0.00 6.01
12 13 1.961277 CCGGCCATCCATAGAACGC 60.961 63.158 2.24 0.00 0.00 4.84
13 14 1.961277 GCCGGCCATCCATAGAACG 60.961 63.158 18.11 0.00 0.00 3.95
20 21 1.753848 CTGAAATGCCGGCCATCCA 60.754 57.895 26.77 15.72 31.43 3.41
29 30 1.298859 AACGACGCCTCTGAAATGCC 61.299 55.000 0.00 0.00 0.00 4.40
38 39 0.798771 CTGCTAGTCAACGACGCCTC 60.799 60.000 0.00 0.00 37.67 4.70
42 43 1.805945 GCCCTGCTAGTCAACGACG 60.806 63.158 0.00 0.00 37.67 5.12
45 46 4.192000 CAGCCCTGCTAGTCAACG 57.808 61.111 0.00 0.00 36.40 4.10
55 56 2.890371 GGCATTGAAGCAGCCCTG 59.110 61.111 0.00 0.00 42.58 4.45
80 81 3.857038 GATGGCCCCGCGAAGGTA 61.857 66.667 8.23 2.09 38.74 3.08
90 91 4.545706 TCCGCGATGTGATGGCCC 62.546 66.667 8.23 0.00 0.00 5.80
142 143 2.509336 GATCGGACACGCACCCAG 60.509 66.667 0.00 0.00 40.69 4.45
157 158 4.457496 CACAGCCTGTCGCCCGAT 62.457 66.667 0.00 0.00 38.78 4.18
182 183 0.608130 AAATCGGGGCTTGGAAAAGC 59.392 50.000 1.79 1.79 44.76 3.51
187 188 0.965363 GCTTCAAATCGGGGCTTGGA 60.965 55.000 0.00 0.00 0.00 3.53
190 191 0.681243 GAGGCTTCAAATCGGGGCTT 60.681 55.000 0.00 0.00 34.78 4.35
198 199 3.134127 GCGGCCGAGGCTTCAAAT 61.134 61.111 33.48 0.00 41.60 2.32
220 221 2.191375 CACAGCCGCTCCATCCAT 59.809 61.111 0.00 0.00 0.00 3.41
233 234 2.389020 CGAGGCAGCAGAAGCACAG 61.389 63.158 0.00 0.00 45.49 3.66
262 263 1.682849 GTGACATGTGGGTGCCCTA 59.317 57.895 1.15 0.00 36.94 3.53
264 265 3.055719 CGTGACATGTGGGTGCCC 61.056 66.667 1.15 0.00 0.00 5.36
268 269 2.747686 GGGTCGTGACATGTGGGT 59.252 61.111 1.15 0.00 0.00 4.51
269 270 2.046314 GGGGTCGTGACATGTGGG 60.046 66.667 1.15 0.00 0.00 4.61
271 272 0.034756 TGAAGGGGTCGTGACATGTG 59.965 55.000 1.15 0.00 0.00 3.21
272 273 0.762418 TTGAAGGGGTCGTGACATGT 59.238 50.000 0.00 0.00 0.00 3.21
274 275 2.436417 CATTTGAAGGGGTCGTGACAT 58.564 47.619 2.00 0.00 0.00 3.06
276 277 0.521735 GCATTTGAAGGGGTCGTGAC 59.478 55.000 0.00 0.00 0.00 3.67
281 282 1.923356 TTGGAGCATTTGAAGGGGTC 58.077 50.000 0.00 0.00 0.00 4.46
282 283 2.568509 CAATTGGAGCATTTGAAGGGGT 59.431 45.455 0.00 0.00 29.53 4.95
283 284 2.678769 GCAATTGGAGCATTTGAAGGGG 60.679 50.000 7.72 0.00 29.53 4.79
291 292 2.811410 TCTGGAAGCAATTGGAGCATT 58.189 42.857 7.72 0.00 0.00 3.56
339 349 2.676471 GATTGGGTGCTTGCGGGT 60.676 61.111 0.00 0.00 0.00 5.28
368 378 0.680280 GCTCTCGGAGGTGACCTACA 60.680 60.000 15.40 0.08 33.03 2.74
370 380 1.076923 GGCTCTCGGAGGTGACCTA 60.077 63.158 2.97 0.00 31.76 3.08
371 381 2.363147 GGCTCTCGGAGGTGACCT 60.363 66.667 2.41 2.41 36.03 3.85
373 383 2.637383 AACGGCTCTCGGAGGTGAC 61.637 63.158 4.96 0.03 44.45 3.67
381 391 2.811317 GACAGGCAACGGCTCTCG 60.811 66.667 0.00 0.00 46.39 4.04
389 399 1.280421 AGAAGGATCAGGACAGGCAAC 59.720 52.381 0.00 0.00 0.00 4.17
390 400 1.556911 GAGAAGGATCAGGACAGGCAA 59.443 52.381 0.00 0.00 0.00 4.52
395 405 0.820226 CTGCGAGAAGGATCAGGACA 59.180 55.000 0.00 0.00 0.00 4.02
407 417 3.057547 GAAGCTCGGCTCTGCGAGA 62.058 63.158 13.34 0.00 38.25 4.04
417 427 0.526524 CTGTAGCGGAAGAAGCTCGG 60.527 60.000 0.00 0.00 44.79 4.63
430 440 1.586564 CGCAGTAGTCGGCTGTAGC 60.587 63.158 0.00 0.00 41.14 3.58
433 443 1.924320 GAGTCGCAGTAGTCGGCTGT 61.924 60.000 0.00 0.00 42.41 4.40
456 466 0.107993 CCTGAGCCGTGACATGTCAT 60.108 55.000 30.10 15.36 42.18 3.06
457 467 1.293179 CCTGAGCCGTGACATGTCA 59.707 57.895 24.56 24.56 37.24 3.58
459 469 1.267574 ATCCCTGAGCCGTGACATGT 61.268 55.000 0.00 0.00 0.00 3.21
490 500 4.458829 ACCTCATCCTCCGCCGGA 62.459 66.667 5.05 5.37 37.50 5.14
495 505 0.390860 GATGACCACCTCATCCTCCG 59.609 60.000 0.00 0.00 46.99 4.63
564 574 4.157246 ACCTGGATTGTTTTTCCTTACCC 58.843 43.478 0.00 0.00 34.17 3.69
566 576 6.489022 ACACTACCTGGATTGTTTTTCCTTAC 59.511 38.462 0.00 0.00 34.17 2.34
599 609 5.936372 TCTTGATGAAGTCTTGAACCATCTG 59.064 40.000 11.31 6.47 35.80 2.90
722 1222 9.528018 AAAATTTGTCTTTTCTATTCGCTCAAA 57.472 25.926 0.00 0.00 0.00 2.69
741 1241 7.903431 CGACCGGAATTCTAGTCTTAAAATTTG 59.097 37.037 9.46 4.44 0.00 2.32
744 1244 6.047231 CCGACCGGAATTCTAGTCTTAAAAT 58.953 40.000 9.46 0.00 37.50 1.82
833 1333 8.522003 ACCGTCCCATAATATAAAAACGTTTTT 58.478 29.630 33.94 33.94 42.51 1.94
834 1334 7.969508 CACCGTCCCATAATATAAAAACGTTTT 59.030 33.333 20.26 20.26 0.00 2.43
835 1335 7.415429 CCACCGTCCCATAATATAAAAACGTTT 60.415 37.037 7.96 7.96 0.00 3.60
836 1336 6.038492 CCACCGTCCCATAATATAAAAACGTT 59.962 38.462 0.00 0.00 0.00 3.99
837 1337 5.528320 CCACCGTCCCATAATATAAAAACGT 59.472 40.000 0.00 0.00 0.00 3.99
838 1338 5.049267 CCCACCGTCCCATAATATAAAAACG 60.049 44.000 0.00 0.00 0.00 3.60
843 1343 3.841845 CCTCCCACCGTCCCATAATATAA 59.158 47.826 0.00 0.00 0.00 0.98
844 1344 3.077848 TCCTCCCACCGTCCCATAATATA 59.922 47.826 0.00 0.00 0.00 0.86
846 1346 1.221007 TCCTCCCACCGTCCCATAATA 59.779 52.381 0.00 0.00 0.00 0.98
848 1348 0.689745 CTCCTCCCACCGTCCCATAA 60.690 60.000 0.00 0.00 0.00 1.90
849 1349 1.075525 CTCCTCCCACCGTCCCATA 60.076 63.158 0.00 0.00 0.00 2.74
851 1351 3.168759 TTCTCCTCCCACCGTCCCA 62.169 63.158 0.00 0.00 0.00 4.37
852 1352 2.284405 TTCTCCTCCCACCGTCCC 60.284 66.667 0.00 0.00 0.00 4.46
853 1353 2.657066 GGTTCTCCTCCCACCGTCC 61.657 68.421 0.00 0.00 0.00 4.79
856 1356 1.328430 GGTAGGTTCTCCTCCCACCG 61.328 65.000 0.00 0.00 43.94 4.94
857 1357 0.252558 TGGTAGGTTCTCCTCCCACC 60.253 60.000 0.00 0.00 43.52 4.61
858 1358 3.393854 TGGTAGGTTCTCCTCCCAC 57.606 57.895 0.00 0.00 43.52 4.61
859 1359 2.426431 TTTGGTAGGTTCTCCTCCCA 57.574 50.000 0.00 0.00 46.10 4.37
860 1360 2.844348 TCATTTGGTAGGTTCTCCTCCC 59.156 50.000 0.00 0.00 43.94 4.30
861 1361 3.263425 TGTCATTTGGTAGGTTCTCCTCC 59.737 47.826 0.00 0.00 43.94 4.30
862 1362 4.553330 TGTCATTTGGTAGGTTCTCCTC 57.447 45.455 0.00 0.00 43.94 3.71
863 1363 6.314917 AAATTGTCATTTGGTAGGTTCTCCT 58.685 36.000 0.00 0.00 38.23 3.69
864 1364 6.208599 TGAAATTGTCATTTGGTAGGTTCTCC 59.791 38.462 0.00 0.00 32.35 3.71
865 1365 7.214467 TGAAATTGTCATTTGGTAGGTTCTC 57.786 36.000 0.00 0.00 32.35 2.87
898 1398 4.710167 AACGTAACCGGCCCTGCC 62.710 66.667 0.00 0.00 46.75 4.85
967 3069 3.440228 GTCTGGAGCGTCTTTGTCTATC 58.560 50.000 0.00 0.00 0.00 2.08
976 3078 2.363147 GAGGGGTCTGGAGCGTCT 60.363 66.667 0.00 0.00 0.00 4.18
977 3079 3.827898 CGAGGGGTCTGGAGCGTC 61.828 72.222 0.00 0.00 0.00 5.19
984 3086 4.436998 GTGACGGCGAGGGGTCTG 62.437 72.222 16.62 0.00 34.31 3.51
997 3099 3.365265 CTTTGCCTGGGCCGTGAC 61.365 66.667 9.28 0.00 41.09 3.67
998 3100 3.884774 ACTTTGCCTGGGCCGTGA 61.885 61.111 9.28 0.00 41.09 4.35
999 3101 3.673484 CACTTTGCCTGGGCCGTG 61.673 66.667 9.28 9.67 41.09 4.94
1000 3102 2.920076 TTTCACTTTGCCTGGGCCGT 62.920 55.000 9.28 1.21 41.09 5.68
1001 3103 2.199652 TTTCACTTTGCCTGGGCCG 61.200 57.895 9.28 0.59 41.09 6.13
1002 3104 1.367471 GTTTCACTTTGCCTGGGCC 59.633 57.895 9.28 0.00 41.09 5.80
1003 3105 0.463620 TTGTTTCACTTTGCCTGGGC 59.536 50.000 4.43 4.43 42.35 5.36
1004 3106 1.535860 CGTTGTTTCACTTTGCCTGGG 60.536 52.381 0.00 0.00 0.00 4.45
1005 3107 1.403679 TCGTTGTTTCACTTTGCCTGG 59.596 47.619 0.00 0.00 0.00 4.45
1008 3110 3.241963 GCTTTTCGTTGTTTCACTTTGCC 60.242 43.478 0.00 0.00 0.00 4.52
1036 3202 0.590195 GATGGATGCTTCGGATGTGC 59.410 55.000 0.00 0.00 0.00 4.57
1207 3373 4.400961 GAAGAGGCTGCCACCGCT 62.401 66.667 22.65 9.40 42.23 5.52
1212 3378 3.011517 GAGGGGAAGAGGCTGCCA 61.012 66.667 22.65 0.00 28.36 4.92
1466 3644 2.685380 CCTCCGGGAGCCTGAACT 60.685 66.667 18.91 0.00 33.58 3.01
1578 3756 1.638529 CCTAGCCGGAGATCTGGATT 58.361 55.000 5.05 1.57 45.36 3.01
1632 3810 1.140816 GAGCGAGTTGAACCTCACAC 58.859 55.000 0.00 0.00 0.00 3.82
1739 4007 5.518847 GCTCGCATTACTACATGACTTAACA 59.481 40.000 0.00 0.00 0.00 2.41
1744 4012 3.801114 TGCTCGCATTACTACATGACT 57.199 42.857 0.00 0.00 0.00 3.41
1745 4013 3.120286 CGATGCTCGCATTACTACATGAC 59.880 47.826 5.79 0.00 36.70 3.06
1746 4014 3.004315 TCGATGCTCGCATTACTACATGA 59.996 43.478 5.79 0.00 40.21 3.07
1747 4015 3.308530 TCGATGCTCGCATTACTACATG 58.691 45.455 5.79 0.00 40.21 3.21
1748 4016 3.004839 ACTCGATGCTCGCATTACTACAT 59.995 43.478 5.79 0.00 40.21 2.29
1749 4017 2.357952 ACTCGATGCTCGCATTACTACA 59.642 45.455 5.79 0.00 40.21 2.74
1750 4018 2.974536 GACTCGATGCTCGCATTACTAC 59.025 50.000 5.79 0.00 40.21 2.73
1751 4019 2.031069 GGACTCGATGCTCGCATTACTA 60.031 50.000 5.79 0.00 40.21 1.82
1752 4020 1.269309 GGACTCGATGCTCGCATTACT 60.269 52.381 5.79 0.00 40.21 2.24
1760 4193 1.728971 CACACTTTGGACTCGATGCTC 59.271 52.381 0.00 0.00 0.00 4.26
1781 4214 4.388165 CAGAAGTTGATCACAGCAGTACAG 59.612 45.833 0.00 0.00 0.00 2.74
1834 4287 5.560953 CGAAGTTCCAAAAGCAGTTAAGAGG 60.561 44.000 0.00 0.00 0.00 3.69
1926 4458 0.035317 ACAGAGTTTCCATGCTGCGA 59.965 50.000 0.00 0.00 31.74 5.10
1985 4622 4.212636 GCGTTTGCCAGAGTTTCTAGTTAA 59.787 41.667 0.00 0.00 33.98 2.01
1987 4624 2.548480 GCGTTTGCCAGAGTTTCTAGTT 59.452 45.455 0.00 0.00 33.98 2.24
2010 4649 3.947868 AGGTGCGTACTAGTAGTTCTGA 58.052 45.455 8.40 0.00 0.00 3.27
2015 4654 2.977914 TCGAAGGTGCGTACTAGTAGT 58.022 47.619 8.14 8.14 0.00 2.73
2016 4655 4.548991 AATCGAAGGTGCGTACTAGTAG 57.451 45.455 1.87 0.00 0.00 2.57
2017 4656 4.875536 TGTAATCGAAGGTGCGTACTAGTA 59.124 41.667 3.01 0.00 0.00 1.82
2036 4675 8.932791 GTCTTTGGAAAGAAATACTCGATGTAA 58.067 33.333 3.38 0.00 45.77 2.41
2055 4695 1.795286 GCAGTTCTCTCGTGTCTTTGG 59.205 52.381 0.00 0.00 0.00 3.28
2066 4706 5.311265 TCAATGAAATCACAGCAGTTCTCT 58.689 37.500 0.00 0.00 0.00 3.10
2092 4732 4.827481 GCCGATGCCGTTCTTCTA 57.173 55.556 0.00 0.00 0.00 2.10
2131 4771 9.555411 AAATTTTAAAGTGTATGGAGGGGTTAT 57.445 29.630 0.00 0.00 0.00 1.89
2132 4772 8.808092 CAAATTTTAAAGTGTATGGAGGGGTTA 58.192 33.333 0.00 0.00 0.00 2.85
2133 4773 7.291416 ACAAATTTTAAAGTGTATGGAGGGGTT 59.709 33.333 0.00 0.00 0.00 4.11
2134 4774 6.785466 ACAAATTTTAAAGTGTATGGAGGGGT 59.215 34.615 0.00 0.00 0.00 4.95
2135 4775 7.239763 ACAAATTTTAAAGTGTATGGAGGGG 57.760 36.000 0.00 0.00 0.00 4.79
2335 4989 1.131928 ACCTTTAGTCCCGGTTGGCT 61.132 55.000 0.00 0.00 0.00 4.75
2539 5208 2.478134 GCTCGGACACTTCATATCATGC 59.522 50.000 0.00 0.00 0.00 4.06
2606 5275 4.704540 TGACACATGAAAGGTTCAAGTTGT 59.295 37.500 0.00 0.53 43.95 3.32
2784 5453 7.839680 AACCAATTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
2815 5484 9.927668 AAACGATTTTCATGAACAAGGAAATAT 57.072 25.926 7.89 0.00 31.30 1.28
2817 5486 9.927668 ATAAACGATTTTCATGAACAAGGAAAT 57.072 25.926 7.89 4.03 31.30 2.17
2818 5487 9.757227 AATAAACGATTTTCATGAACAAGGAAA 57.243 25.926 7.89 0.00 0.00 3.13
2850 5519 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
2851 5520 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
2859 5528 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
2860 5529 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
2861 5530 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
2862 5531 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
2863 5532 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
2864 5533 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
2865 5534 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
2866 5535 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
2867 5536 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
2868 5537 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
2869 5538 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
2870 5539 7.041721 TGTATCCACACATGTATCTGAGTTTC 58.958 38.462 0.00 0.00 0.00 2.78
2871 5540 6.946340 TGTATCCACACATGTATCTGAGTTT 58.054 36.000 0.00 0.00 0.00 2.66
2872 5541 6.544928 TGTATCCACACATGTATCTGAGTT 57.455 37.500 0.00 0.00 0.00 3.01
2873 5542 6.737720 ATGTATCCACACATGTATCTGAGT 57.262 37.500 0.00 0.00 37.74 3.41
2874 5543 8.026026 GTCTATGTATCCACACATGTATCTGAG 58.974 40.741 0.00 0.00 39.46 3.35
2875 5544 7.505585 TGTCTATGTATCCACACATGTATCTGA 59.494 37.037 0.00 0.00 39.46 3.27
2876 5545 7.661040 TGTCTATGTATCCACACATGTATCTG 58.339 38.462 0.00 0.00 39.46 2.90
2877 5546 7.839680 TGTCTATGTATCCACACATGTATCT 57.160 36.000 0.00 0.00 39.46 1.98
2878 5547 7.926018 TGTTGTCTATGTATCCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
2879 5548 7.710907 GTGTTGTCTATGTATCCACACATGTAT 59.289 37.037 0.00 0.00 39.46 2.29
2880 5549 7.039270 GTGTTGTCTATGTATCCACACATGTA 58.961 38.462 0.00 0.00 39.46 2.29
2881 5550 5.874810 GTGTTGTCTATGTATCCACACATGT 59.125 40.000 0.00 0.00 39.46 3.21
2882 5551 5.294306 GGTGTTGTCTATGTATCCACACATG 59.706 44.000 0.00 0.00 39.46 3.21
2883 5552 5.045942 TGGTGTTGTCTATGTATCCACACAT 60.046 40.000 0.00 0.00 41.88 3.21
2884 5553 4.284746 TGGTGTTGTCTATGTATCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
2885 5554 4.827692 TGGTGTTGTCTATGTATCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
2886 5555 5.045942 ACATGGTGTTGTCTATGTATCCACA 60.046 40.000 0.00 0.00 39.52 4.17
2887 5556 5.428253 ACATGGTGTTGTCTATGTATCCAC 58.572 41.667 0.00 0.00 32.41 4.02
2888 5557 5.396324 GGACATGGTGTTGTCTATGTATCCA 60.396 44.000 0.00 0.00 44.39 3.41
2889 5558 5.057149 GGACATGGTGTTGTCTATGTATCC 58.943 45.833 0.00 0.00 44.39 2.59
2890 5559 5.057149 GGGACATGGTGTTGTCTATGTATC 58.943 45.833 0.00 0.00 44.39 2.24
2891 5560 4.721776 AGGGACATGGTGTTGTCTATGTAT 59.278 41.667 0.00 0.00 44.39 2.29
2892 5561 4.101114 AGGGACATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 44.39 2.29
2893 5562 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
2894 5563 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
2895 5564 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
2896 5565 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
2897 5566 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
2898 5567 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
2899 5568 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
2900 5569 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
2901 5570 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
2902 5571 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
2903 5572 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
2904 5573 2.022918 AGAGGCTTACTAGGGACATGGT 60.023 50.000 0.00 0.00 0.00 3.55
2905 5574 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
2906 5575 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
2907 5576 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
2908 5577 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
2909 5578 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
2910 5579 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
2911 5580 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
2912 5581 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
2913 5582 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
2914 5583 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
2915 5584 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
2916 5585 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
2917 5586 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
2918 5587 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
2919 5588 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
2920 5589 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
2921 5590 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
2922 5591 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
2923 5592 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
2924 5593 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
2925 5594 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
2926 5595 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
2927 5596 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
2928 5597 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
2929 5598 6.442112 CATCTATTGATCAACGAGCTAGTCA 58.558 40.000 11.07 0.00 0.00 3.41
2930 5599 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
2931 5600 5.303078 ACCATCTATTGATCAACGAGCTAGT 59.697 40.000 11.07 6.23 0.00 2.57
2932 5601 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
2933 5602 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
2934 5603 4.679373 ACCATCTATTGATCAACGAGCT 57.321 40.909 11.07 0.00 0.00 4.09
2935 5604 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
2936 5605 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
2937 5606 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
2938 5607 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
2939 5608 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
2940 5609 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
2941 5610 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
2942 5611 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
2943 5612 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
2944 5613 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
2945 5614 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
2946 5615 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
2947 5616 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
2948 5617 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
2949 5618 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
2950 5619 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
2951 5620 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
2952 5621 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
2953 5622 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
2954 5623 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
2955 5624 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
2956 5625 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
2957 5626 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
2958 5627 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
2959 5628 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
2960 5629 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
2961 5630 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
2962 5631 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
2963 5632 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
2964 5633 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
2965 5634 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
2987 5656 7.867909 TCCTAATGATGTGATCTCGTTATCAAC 59.132 37.037 4.42 1.68 37.61 3.18
2988 5657 7.951591 TCCTAATGATGTGATCTCGTTATCAA 58.048 34.615 4.42 0.00 37.61 2.57
2989 5658 7.448469 TCTCCTAATGATGTGATCTCGTTATCA 59.552 37.037 0.00 0.00 33.48 2.15
2990 5659 7.821652 TCTCCTAATGATGTGATCTCGTTATC 58.178 38.462 0.00 0.00 0.00 1.75
2991 5660 7.767250 TCTCCTAATGATGTGATCTCGTTAT 57.233 36.000 0.00 0.00 0.00 1.89
2992 5661 7.582667 TTCTCCTAATGATGTGATCTCGTTA 57.417 36.000 0.00 0.00 0.00 3.18
2993 5662 6.471233 TTCTCCTAATGATGTGATCTCGTT 57.529 37.500 0.00 0.00 0.00 3.85
2994 5663 6.266330 TCATTCTCCTAATGATGTGATCTCGT 59.734 38.462 0.00 0.00 32.21 4.18
2995 5664 6.685657 TCATTCTCCTAATGATGTGATCTCG 58.314 40.000 0.00 0.00 32.21 4.04
3004 5673 8.215736 TGTCAATCACATCATTCTCCTAATGAT 58.784 33.333 7.28 7.28 45.40 2.45
3005 5674 7.567458 TGTCAATCACATCATTCTCCTAATGA 58.433 34.615 3.13 3.13 40.50 2.57
3006 5675 7.797038 TGTCAATCACATCATTCTCCTAATG 57.203 36.000 0.00 0.00 0.00 1.90
3007 5676 8.270030 TCTTGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 33.90 1.73
3008 5677 7.550551 GTCTTGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 33.90 2.69
3009 5678 7.044181 GTCTTGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 33.90 2.94
3010 5679 5.879223 GTCTTGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 33.90 3.69
3011 5680 5.065731 GGTCTTGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 33.90 3.71
3012 5681 5.065731 GGGTCTTGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 33.90 2.87
3013 5682 4.946157 GGGTCTTGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 33.90 2.40
3014 5683 4.701651 TGGGTCTTGTCAATCACATCATTC 59.298 41.667 0.00 0.00 33.90 2.67
3015 5684 4.665451 TGGGTCTTGTCAATCACATCATT 58.335 39.130 0.00 0.00 33.90 2.57
3016 5685 4.305539 TGGGTCTTGTCAATCACATCAT 57.694 40.909 0.00 0.00 33.90 2.45
3017 5686 3.786368 TGGGTCTTGTCAATCACATCA 57.214 42.857 0.00 0.00 33.90 3.07
3018 5687 4.096984 GGATTGGGTCTTGTCAATCACATC 59.903 45.833 15.09 0.00 46.49 3.06
3019 5688 4.019174 GGATTGGGTCTTGTCAATCACAT 58.981 43.478 15.09 0.00 46.49 3.21
3020 5689 3.074390 AGGATTGGGTCTTGTCAATCACA 59.926 43.478 15.09 0.00 46.49 3.58
3021 5690 3.690460 AGGATTGGGTCTTGTCAATCAC 58.310 45.455 15.09 7.15 46.49 3.06
3022 5691 5.500234 CTTAGGATTGGGTCTTGTCAATCA 58.500 41.667 15.09 0.00 46.49 2.57
3023 5692 4.336713 GCTTAGGATTGGGTCTTGTCAATC 59.663 45.833 7.32 7.32 44.93 2.67
3024 5693 4.273318 GCTTAGGATTGGGTCTTGTCAAT 58.727 43.478 0.00 0.00 36.43 2.57
3025 5694 3.561313 GGCTTAGGATTGGGTCTTGTCAA 60.561 47.826 0.00 0.00 0.00 3.18
3026 5695 2.026262 GGCTTAGGATTGGGTCTTGTCA 60.026 50.000 0.00 0.00 0.00 3.58
3027 5696 2.239907 AGGCTTAGGATTGGGTCTTGTC 59.760 50.000 0.00 0.00 0.00 3.18
3028 5697 2.279173 AGGCTTAGGATTGGGTCTTGT 58.721 47.619 0.00 0.00 0.00 3.16
3029 5698 3.745797 GCTAGGCTTAGGATTGGGTCTTG 60.746 52.174 4.88 0.00 0.00 3.02
3030 5699 2.439880 GCTAGGCTTAGGATTGGGTCTT 59.560 50.000 4.88 0.00 0.00 3.01
3031 5700 2.050918 GCTAGGCTTAGGATTGGGTCT 58.949 52.381 4.88 0.00 0.00 3.85
3032 5701 1.768870 TGCTAGGCTTAGGATTGGGTC 59.231 52.381 4.88 0.00 0.00 4.46
3033 5702 1.490910 GTGCTAGGCTTAGGATTGGGT 59.509 52.381 4.88 0.00 29.47 4.51
3034 5703 1.490490 TGTGCTAGGCTTAGGATTGGG 59.510 52.381 4.88 0.00 29.47 4.12
3035 5704 3.118261 TCTTGTGCTAGGCTTAGGATTGG 60.118 47.826 4.88 0.00 29.47 3.16
3036 5705 4.142609 TCTTGTGCTAGGCTTAGGATTG 57.857 45.455 4.88 0.00 29.47 2.67
3037 5706 4.502259 CGATCTTGTGCTAGGCTTAGGATT 60.502 45.833 4.88 0.00 29.47 3.01
3038 5707 3.006323 CGATCTTGTGCTAGGCTTAGGAT 59.994 47.826 4.88 0.00 29.47 3.24
3039 5708 2.362397 CGATCTTGTGCTAGGCTTAGGA 59.638 50.000 4.88 0.00 0.00 2.94
3040 5709 2.101582 ACGATCTTGTGCTAGGCTTAGG 59.898 50.000 4.88 0.00 0.00 2.69
3041 5710 3.119291 CACGATCTTGTGCTAGGCTTAG 58.881 50.000 0.00 0.00 32.31 2.18
3042 5711 2.496070 ACACGATCTTGTGCTAGGCTTA 59.504 45.455 3.70 0.00 43.74 3.09
3043 5712 1.276421 ACACGATCTTGTGCTAGGCTT 59.724 47.619 3.70 0.00 43.74 4.35
3044 5713 0.898320 ACACGATCTTGTGCTAGGCT 59.102 50.000 3.70 0.00 43.74 4.58
3045 5714 2.159226 ACTACACGATCTTGTGCTAGGC 60.159 50.000 14.69 0.00 43.74 3.93
3046 5715 3.784701 ACTACACGATCTTGTGCTAGG 57.215 47.619 14.69 3.20 43.74 3.02
3047 5716 3.786576 CGAACTACACGATCTTGTGCTAG 59.213 47.826 14.69 7.03 43.74 3.42
3048 5717 3.189910 ACGAACTACACGATCTTGTGCTA 59.810 43.478 14.69 0.00 43.74 3.49
3049 5718 2.030185 ACGAACTACACGATCTTGTGCT 60.030 45.455 14.69 0.00 43.74 4.40
3050 5719 2.325761 ACGAACTACACGATCTTGTGC 58.674 47.619 14.69 1.64 43.74 4.57
3051 5720 4.688063 CAAACGAACTACACGATCTTGTG 58.312 43.478 14.69 7.12 45.41 3.33
3052 5721 3.183775 GCAAACGAACTACACGATCTTGT 59.816 43.478 10.01 10.01 34.70 3.16
3053 5722 3.428870 AGCAAACGAACTACACGATCTTG 59.571 43.478 0.00 0.00 34.70 3.02
3054 5723 3.650139 AGCAAACGAACTACACGATCTT 58.350 40.909 0.00 0.00 34.70 2.40
3055 5724 3.243336 GAGCAAACGAACTACACGATCT 58.757 45.455 0.00 0.00 34.70 2.75
3056 5725 2.984471 TGAGCAAACGAACTACACGATC 59.016 45.455 0.00 0.00 34.70 3.69
3057 5726 2.987149 CTGAGCAAACGAACTACACGAT 59.013 45.455 0.00 0.00 34.70 3.73
3058 5727 2.033675 TCTGAGCAAACGAACTACACGA 59.966 45.455 0.00 0.00 34.70 4.35
3059 5728 2.390938 TCTGAGCAAACGAACTACACG 58.609 47.619 0.00 0.00 0.00 4.49
3060 5729 2.155924 GCTCTGAGCAAACGAACTACAC 59.844 50.000 24.02 0.00 41.89 2.90
3061 5730 2.035961 AGCTCTGAGCAAACGAACTACA 59.964 45.455 29.49 0.00 45.56 2.74
3062 5731 2.678324 AGCTCTGAGCAAACGAACTAC 58.322 47.619 29.49 0.00 45.56 2.73
3063 5732 3.386768 AAGCTCTGAGCAAACGAACTA 57.613 42.857 29.49 0.00 45.56 2.24
3064 5733 2.246719 AAGCTCTGAGCAAACGAACT 57.753 45.000 29.49 5.21 45.56 3.01
3065 5734 3.002759 AGAAAAGCTCTGAGCAAACGAAC 59.997 43.478 29.49 14.12 45.56 3.95
3066 5735 3.206150 AGAAAAGCTCTGAGCAAACGAA 58.794 40.909 29.49 0.00 45.56 3.85
3067 5736 2.838736 AGAAAAGCTCTGAGCAAACGA 58.161 42.857 29.49 0.00 45.56 3.85
3068 5737 4.732285 TTAGAAAAGCTCTGAGCAAACG 57.268 40.909 29.49 0.00 45.56 3.60
3069 5738 6.006759 ACATTAGAAAAGCTCTGAGCAAAC 57.993 37.500 29.49 17.35 45.56 2.93
3070 5739 5.764686 TGACATTAGAAAAGCTCTGAGCAAA 59.235 36.000 29.49 14.16 45.56 3.68
3071 5740 5.308014 TGACATTAGAAAAGCTCTGAGCAA 58.692 37.500 29.49 15.19 45.56 3.91
3072 5741 4.898320 TGACATTAGAAAAGCTCTGAGCA 58.102 39.130 29.49 9.13 45.56 4.26
3073 5742 5.411053 ACTTGACATTAGAAAAGCTCTGAGC 59.589 40.000 21.72 21.72 42.84 4.26
3074 5743 8.715191 ATACTTGACATTAGAAAAGCTCTGAG 57.285 34.615 0.00 0.00 35.41 3.35
3075 5744 8.314021 TGATACTTGACATTAGAAAAGCTCTGA 58.686 33.333 0.00 0.00 35.41 3.27
3076 5745 8.484641 TGATACTTGACATTAGAAAAGCTCTG 57.515 34.615 0.00 0.00 35.41 3.35
3077 5746 9.678260 AATGATACTTGACATTAGAAAAGCTCT 57.322 29.630 0.00 0.00 35.39 4.09
3080 5749 9.508567 GGAAATGATACTTGACATTAGAAAAGC 57.491 33.333 0.00 0.00 35.99 3.51
3087 5756 9.832445 GGTCTAAGGAAATGATACTTGACATTA 57.168 33.333 0.00 0.00 35.99 1.90
3088 5757 8.328758 TGGTCTAAGGAAATGATACTTGACATT 58.671 33.333 0.00 0.00 38.18 2.71
3089 5758 7.861629 TGGTCTAAGGAAATGATACTTGACAT 58.138 34.615 0.00 0.00 30.76 3.06
3090 5759 7.252612 TGGTCTAAGGAAATGATACTTGACA 57.747 36.000 0.00 0.00 30.76 3.58
3091 5760 7.987458 TCATGGTCTAAGGAAATGATACTTGAC 59.013 37.037 0.00 0.00 0.00 3.18
3092 5761 8.089625 TCATGGTCTAAGGAAATGATACTTGA 57.910 34.615 0.00 0.00 0.00 3.02
3093 5762 8.206867 TCTCATGGTCTAAGGAAATGATACTTG 58.793 37.037 0.00 0.00 31.04 3.16
3094 5763 8.324191 TCTCATGGTCTAAGGAAATGATACTT 57.676 34.615 0.00 0.00 31.04 2.24
3095 5764 7.921041 TCTCATGGTCTAAGGAAATGATACT 57.079 36.000 0.00 0.00 31.04 2.12
3096 5765 8.997323 CAATCTCATGGTCTAAGGAAATGATAC 58.003 37.037 0.00 0.00 31.04 2.24
3097 5766 8.717717 ACAATCTCATGGTCTAAGGAAATGATA 58.282 33.333 0.00 0.00 31.04 2.15
3098 5767 7.501559 CACAATCTCATGGTCTAAGGAAATGAT 59.498 37.037 0.00 0.00 31.04 2.45
3099 5768 6.825213 CACAATCTCATGGTCTAAGGAAATGA 59.175 38.462 0.00 0.00 0.00 2.57
3100 5769 6.459298 GCACAATCTCATGGTCTAAGGAAATG 60.459 42.308 0.00 0.00 0.00 2.32
3101 5770 5.591877 GCACAATCTCATGGTCTAAGGAAAT 59.408 40.000 0.00 0.00 0.00 2.17
3102 5771 4.943705 GCACAATCTCATGGTCTAAGGAAA 59.056 41.667 0.00 0.00 0.00 3.13
3103 5772 4.019411 TGCACAATCTCATGGTCTAAGGAA 60.019 41.667 0.00 0.00 0.00 3.36
3104 5773 3.519107 TGCACAATCTCATGGTCTAAGGA 59.481 43.478 0.00 0.00 0.00 3.36
3105 5774 3.877559 TGCACAATCTCATGGTCTAAGG 58.122 45.455 0.00 0.00 0.00 2.69
3106 5775 4.940046 AGTTGCACAATCTCATGGTCTAAG 59.060 41.667 0.00 0.00 0.00 2.18
3107 5776 4.910195 AGTTGCACAATCTCATGGTCTAA 58.090 39.130 0.00 0.00 0.00 2.10
3108 5777 4.507710 GAGTTGCACAATCTCATGGTCTA 58.492 43.478 0.00 0.00 0.00 2.59
3109 5778 3.341823 GAGTTGCACAATCTCATGGTCT 58.658 45.455 0.00 0.00 0.00 3.85
3110 5779 2.421424 GGAGTTGCACAATCTCATGGTC 59.579 50.000 12.06 0.00 0.00 4.02
3111 5780 2.440409 GGAGTTGCACAATCTCATGGT 58.560 47.619 12.06 0.00 0.00 3.55
3112 5781 1.747355 GGGAGTTGCACAATCTCATGG 59.253 52.381 12.06 0.00 0.00 3.66
3113 5782 1.399440 CGGGAGTTGCACAATCTCATG 59.601 52.381 12.06 0.00 0.00 3.07
3114 5783 1.679944 CCGGGAGTTGCACAATCTCAT 60.680 52.381 0.00 0.00 0.00 2.90
3115 5784 0.321564 CCGGGAGTTGCACAATCTCA 60.322 55.000 0.00 0.00 0.00 3.27
3116 5785 0.036388 TCCGGGAGTTGCACAATCTC 60.036 55.000 0.00 0.00 0.00 2.75
3117 5786 0.620556 ATCCGGGAGTTGCACAATCT 59.379 50.000 0.00 0.00 0.00 2.40
3118 5787 1.940613 GTATCCGGGAGTTGCACAATC 59.059 52.381 0.00 0.00 0.00 2.67
3119 5788 1.408266 GGTATCCGGGAGTTGCACAAT 60.408 52.381 0.00 0.00 0.00 2.71
3120 5789 0.035820 GGTATCCGGGAGTTGCACAA 60.036 55.000 0.00 0.00 0.00 3.33
3121 5790 1.600107 GGTATCCGGGAGTTGCACA 59.400 57.895 0.00 0.00 0.00 4.57
3122 5791 1.520787 CGGTATCCGGGAGTTGCAC 60.521 63.158 0.00 0.00 44.15 4.57
3123 5792 2.897207 CGGTATCCGGGAGTTGCA 59.103 61.111 0.00 0.00 44.15 4.08
3133 5802 3.139077 CCAAAGCATTCCTACGGTATCC 58.861 50.000 0.00 0.00 0.00 2.59
3134 5803 3.139077 CCCAAAGCATTCCTACGGTATC 58.861 50.000 0.00 0.00 0.00 2.24
3135 5804 2.508300 ACCCAAAGCATTCCTACGGTAT 59.492 45.455 0.00 0.00 0.00 2.73
3136 5805 1.910671 ACCCAAAGCATTCCTACGGTA 59.089 47.619 0.00 0.00 0.00 4.02
3137 5806 0.696501 ACCCAAAGCATTCCTACGGT 59.303 50.000 0.00 0.00 0.00 4.83
3138 5807 1.094785 CACCCAAAGCATTCCTACGG 58.905 55.000 0.00 0.00 0.00 4.02
3139 5808 1.821216 ACACCCAAAGCATTCCTACG 58.179 50.000 0.00 0.00 0.00 3.51
3140 5809 3.014623 GGTACACCCAAAGCATTCCTAC 58.985 50.000 0.00 0.00 0.00 3.18
3141 5810 2.645297 TGGTACACCCAAAGCATTCCTA 59.355 45.455 0.00 0.00 41.50 2.94
3142 5811 1.427368 TGGTACACCCAAAGCATTCCT 59.573 47.619 0.00 0.00 41.50 3.36
3143 5812 1.917872 TGGTACACCCAAAGCATTCC 58.082 50.000 0.00 0.00 41.50 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.