Multiple sequence alignment - TraesCS4D01G211700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G211700 chr4D 100.000 4216 0 0 808 5023 364036905 364032690 0.000000e+00 7786.0
1 TraesCS4D01G211700 chr4D 100.000 489 0 0 1 489 364037712 364037224 0.000000e+00 904.0
2 TraesCS4D01G211700 chr4B 93.895 3718 168 37 1334 5014 449513304 449509609 0.000000e+00 5553.0
3 TraesCS4D01G211700 chr4B 97.534 446 9 2 832 1275 449513755 449513310 0.000000e+00 761.0
4 TraesCS4D01G211700 chr4B 84.000 100 12 4 2 99 672343587 672343684 5.350000e-15 93.5
5 TraesCS4D01G211700 chr4B 95.238 42 2 0 324 365 397715555 397715514 3.250000e-07 67.6
6 TraesCS4D01G211700 chr4A 95.040 3367 120 24 1693 5023 100960848 100964203 0.000000e+00 5249.0
7 TraesCS4D01G211700 chr4A 93.046 417 9 6 826 1241 100960071 100960468 4.330000e-165 592.0
8 TraesCS4D01G211700 chr4A 89.460 389 30 8 1274 1658 100960468 100960849 9.780000e-132 481.0
9 TraesCS4D01G211700 chr4A 83.000 100 9 7 324 415 591513505 591513406 3.220000e-12 84.2
10 TraesCS4D01G211700 chr4A 81.818 99 10 7 325 415 592817150 592817248 5.390000e-10 76.8
11 TraesCS4D01G211700 chr4A 80.808 99 11 7 325 415 593097363 593097461 2.510000e-08 71.3
12 TraesCS4D01G211700 chr5D 90.203 296 28 1 1 296 424600755 424600461 7.890000e-103 385.0
13 TraesCS4D01G211700 chr5D 83.544 79 10 3 322 397 184082857 184082935 2.510000e-08 71.3
14 TraesCS4D01G211700 chr1D 88.854 314 25 5 1 307 267730989 267730679 1.320000e-100 377.0
15 TraesCS4D01G211700 chr7B 89.597 298 25 2 1 292 700559320 700559617 1.710000e-99 374.0
16 TraesCS4D01G211700 chr1B 89.262 298 26 3 1 298 345338326 345338617 7.940000e-98 368.0
17 TraesCS4D01G211700 chr1B 85.714 91 6 7 320 406 74944279 74944366 6.930000e-14 89.8
18 TraesCS4D01G211700 chr1A 88.926 298 33 0 1 298 14156595 14156298 7.940000e-98 368.0
19 TraesCS4D01G211700 chr1A 87.919 298 35 1 1 298 14148606 14148310 2.880000e-92 350.0
20 TraesCS4D01G211700 chr7D 88.809 277 29 2 1 277 534635041 534634767 6.230000e-89 339.0
21 TraesCS4D01G211700 chr3A 87.075 294 28 4 1 292 235822400 235822685 1.740000e-84 324.0
22 TraesCS4D01G211700 chr2D 93.197 147 10 0 132 278 642238137 642238283 3.050000e-52 217.0
23 TraesCS4D01G211700 chr2B 85.556 90 11 2 320 408 298326672 298326584 5.350000e-15 93.5
24 TraesCS4D01G211700 chr2B 84.058 69 11 0 340 408 17932296 17932364 3.250000e-07 67.6
25 TraesCS4D01G211700 chr7A 79.167 96 17 2 326 418 584040750 584040655 4.200000e-06 63.9
26 TraesCS4D01G211700 chr5B 94.595 37 0 2 376 410 559767083 559767119 7.020000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G211700 chr4D 364032690 364037712 5022 True 4345.000000 7786 100.000000 1 5023 2 chr4D.!!$R1 5022
1 TraesCS4D01G211700 chr4B 449509609 449513755 4146 True 3157.000000 5553 95.714500 832 5014 2 chr4B.!!$R2 4182
2 TraesCS4D01G211700 chr4A 100960071 100964203 4132 False 2107.333333 5249 92.515333 826 5023 3 chr4A.!!$F3 4197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.030369 ATAAAGTACGAGGCGAGGCG 59.970 55.000 0.00 0.00 0.00 5.52 F
276 277 0.034896 GTGATTATCCGCCGGGTGAT 59.965 55.000 9.67 0.00 33.83 3.06 F
346 347 0.104882 TCCCTCCGGCCCATAATGTA 60.105 55.000 0.00 0.00 0.00 2.29 F
1254 1260 0.108585 TATCCAGAGGGCCAATTCGC 59.891 55.000 6.18 0.00 0.00 4.70 F
1664 1672 0.179100 GGTTGAGCTCATGCGCTAGA 60.179 55.000 19.04 5.48 45.42 2.43 F
2537 2555 1.077212 CCTTGCAGTCAGGATGGGG 60.077 63.158 0.00 0.00 36.16 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1264 0.255890 GGCATTACAAGGGCAGAGGA 59.744 55.000 0.00 0.0 35.18 3.71 R
2038 2052 0.671472 TCATCTGAAGCCACTGCACG 60.671 55.000 0.00 0.0 41.13 5.34 R
2330 2344 3.569194 TGGCAAGAGGTGACAAAAGTA 57.431 42.857 0.00 0.0 44.65 2.24 R
2478 2494 0.761802 GGAAGGGGGAGAGTATGCAG 59.238 60.000 0.00 0.0 0.00 4.41 R
2577 2595 1.202855 AGCTGAACACTGTGAGGCAAT 60.203 47.619 15.86 0.0 0.00 3.56 R
4081 4126 0.269173 CCCCTCCCTCCCTAATCACT 59.731 60.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.363306 TTCACAGGAAACATGCCAGT 57.637 45.000 0.00 0.00 0.00 4.00
20 21 1.608055 TCACAGGAAACATGCCAGTG 58.392 50.000 6.95 6.95 42.34 3.66
21 22 0.599558 CACAGGAAACATGCCAGTGG 59.400 55.000 4.20 4.20 38.73 4.00
32 33 2.262915 CCAGTGGCAGTCGAGTCC 59.737 66.667 0.00 0.00 0.00 3.85
33 34 2.279069 CCAGTGGCAGTCGAGTCCT 61.279 63.158 0.00 0.00 0.00 3.85
34 35 1.668294 CAGTGGCAGTCGAGTCCTT 59.332 57.895 0.00 0.00 0.00 3.36
35 36 0.389166 CAGTGGCAGTCGAGTCCTTC 60.389 60.000 0.00 4.44 0.00 3.46
43 44 4.194720 CGAGTCCTTCGCCTCCGG 62.195 72.222 0.00 0.00 43.22 5.14
44 45 4.516195 GAGTCCTTCGCCTCCGGC 62.516 72.222 0.00 0.00 46.75 6.13
61 62 4.767255 CTGCTTTCCCGGCGAGCT 62.767 66.667 17.43 0.00 37.32 4.09
62 63 4.760047 TGCTTTCCCGGCGAGCTC 62.760 66.667 17.43 2.73 37.32 4.09
63 64 4.760047 GCTTTCCCGGCGAGCTCA 62.760 66.667 15.40 0.00 33.72 4.26
64 65 2.047274 CTTTCCCGGCGAGCTCAA 60.047 61.111 15.40 0.00 0.00 3.02
65 66 2.047274 TTTCCCGGCGAGCTCAAG 60.047 61.111 15.40 3.78 0.00 3.02
66 67 4.760047 TTCCCGGCGAGCTCAAGC 62.760 66.667 15.40 9.87 42.49 4.01
72 73 4.215349 GCGAGCTCAAGCCAGATT 57.785 55.556 15.40 0.00 43.38 2.40
73 74 2.475666 GCGAGCTCAAGCCAGATTT 58.524 52.632 15.40 0.00 43.38 2.17
74 75 0.098376 GCGAGCTCAAGCCAGATTTG 59.902 55.000 15.40 0.00 43.38 2.32
75 76 0.098376 CGAGCTCAAGCCAGATTTGC 59.902 55.000 15.40 0.00 43.38 3.68
76 77 1.171308 GAGCTCAAGCCAGATTTGCA 58.829 50.000 9.40 0.00 43.38 4.08
77 78 0.886563 AGCTCAAGCCAGATTTGCAC 59.113 50.000 0.00 0.00 43.38 4.57
78 79 0.108945 GCTCAAGCCAGATTTGCACC 60.109 55.000 0.00 0.00 34.31 5.01
79 80 0.529378 CTCAAGCCAGATTTGCACCC 59.471 55.000 0.00 0.00 0.00 4.61
80 81 0.178967 TCAAGCCAGATTTGCACCCA 60.179 50.000 0.00 0.00 0.00 4.51
81 82 0.245539 CAAGCCAGATTTGCACCCAG 59.754 55.000 0.00 0.00 0.00 4.45
82 83 0.901580 AAGCCAGATTTGCACCCAGG 60.902 55.000 0.00 0.00 0.00 4.45
83 84 2.353610 GCCAGATTTGCACCCAGGG 61.354 63.158 2.85 2.85 0.00 4.45
84 85 1.383799 CCAGATTTGCACCCAGGGA 59.616 57.895 14.54 0.00 0.00 4.20
85 86 0.251742 CCAGATTTGCACCCAGGGAA 60.252 55.000 14.54 0.00 0.00 3.97
86 87 1.180029 CAGATTTGCACCCAGGGAAG 58.820 55.000 14.54 5.29 0.00 3.46
87 88 0.040204 AGATTTGCACCCAGGGAAGG 59.960 55.000 14.54 1.92 0.00 3.46
88 89 0.039618 GATTTGCACCCAGGGAAGGA 59.960 55.000 14.54 2.06 0.00 3.36
89 90 0.040204 ATTTGCACCCAGGGAAGGAG 59.960 55.000 14.54 0.00 0.00 3.69
90 91 1.065410 TTTGCACCCAGGGAAGGAGA 61.065 55.000 14.54 0.00 0.00 3.71
91 92 1.492133 TTGCACCCAGGGAAGGAGAG 61.492 60.000 14.54 0.00 0.00 3.20
92 93 1.613630 GCACCCAGGGAAGGAGAGA 60.614 63.158 14.54 0.00 0.00 3.10
93 94 0.985490 GCACCCAGGGAAGGAGAGAT 60.985 60.000 14.54 0.00 0.00 2.75
94 95 0.835941 CACCCAGGGAAGGAGAGATG 59.164 60.000 14.54 0.00 0.00 2.90
95 96 0.419459 ACCCAGGGAAGGAGAGATGT 59.581 55.000 14.54 0.00 0.00 3.06
96 97 0.835941 CCCAGGGAAGGAGAGATGTG 59.164 60.000 0.00 0.00 0.00 3.21
97 98 1.623557 CCCAGGGAAGGAGAGATGTGA 60.624 57.143 0.00 0.00 0.00 3.58
98 99 1.761784 CCAGGGAAGGAGAGATGTGAG 59.238 57.143 0.00 0.00 0.00 3.51
99 100 2.465813 CAGGGAAGGAGAGATGTGAGT 58.534 52.381 0.00 0.00 0.00 3.41
100 101 3.628513 CCAGGGAAGGAGAGATGTGAGTA 60.629 52.174 0.00 0.00 0.00 2.59
101 102 3.636300 CAGGGAAGGAGAGATGTGAGTAG 59.364 52.174 0.00 0.00 0.00 2.57
102 103 2.364002 GGGAAGGAGAGATGTGAGTAGC 59.636 54.545 0.00 0.00 0.00 3.58
103 104 3.027412 GGAAGGAGAGATGTGAGTAGCA 58.973 50.000 0.00 0.00 0.00 3.49
111 112 4.592426 GTGAGTAGCACGGGGAAC 57.408 61.111 0.00 0.00 37.83 3.62
123 124 3.431725 GGGAACCGCTTCGCTTGG 61.432 66.667 0.56 0.00 40.86 3.61
124 125 4.103103 GGAACCGCTTCGCTTGGC 62.103 66.667 0.00 0.00 0.00 4.52
125 126 4.103103 GAACCGCTTCGCTTGGCC 62.103 66.667 0.00 0.00 0.00 5.36
126 127 4.947147 AACCGCTTCGCTTGGCCA 62.947 61.111 0.00 0.00 0.00 5.36
127 128 4.722700 ACCGCTTCGCTTGGCCAT 62.723 61.111 6.09 0.00 0.00 4.40
128 129 4.183686 CCGCTTCGCTTGGCCATG 62.184 66.667 6.09 11.02 0.00 3.66
129 130 4.842091 CGCTTCGCTTGGCCATGC 62.842 66.667 29.05 29.05 0.00 4.06
130 131 3.446570 GCTTCGCTTGGCCATGCT 61.447 61.111 33.31 0.00 0.00 3.79
131 132 2.488355 CTTCGCTTGGCCATGCTG 59.512 61.111 33.31 26.84 0.00 4.41
132 133 2.033911 TTCGCTTGGCCATGCTGA 59.966 55.556 33.31 28.24 0.00 4.26
133 134 1.378911 TTCGCTTGGCCATGCTGAT 60.379 52.632 33.31 0.00 0.00 2.90
134 135 0.966875 TTCGCTTGGCCATGCTGATT 60.967 50.000 33.31 0.00 0.00 2.57
135 136 1.065273 CGCTTGGCCATGCTGATTC 59.935 57.895 33.31 10.93 0.00 2.52
136 137 1.659622 CGCTTGGCCATGCTGATTCA 61.660 55.000 33.31 4.95 0.00 2.57
137 138 0.750850 GCTTGGCCATGCTGATTCAT 59.249 50.000 30.87 0.00 0.00 2.57
138 139 1.538204 GCTTGGCCATGCTGATTCATG 60.538 52.381 30.87 0.00 42.53 3.07
139 140 2.028876 CTTGGCCATGCTGATTCATGA 58.971 47.619 6.09 0.00 44.94 3.07
140 141 1.687563 TGGCCATGCTGATTCATGAG 58.312 50.000 0.00 0.00 44.94 2.90
141 142 0.959553 GGCCATGCTGATTCATGAGG 59.040 55.000 0.00 0.00 44.94 3.86
142 143 1.478105 GGCCATGCTGATTCATGAGGA 60.478 52.381 0.00 0.00 44.94 3.71
143 144 2.304092 GCCATGCTGATTCATGAGGAA 58.696 47.619 5.41 0.00 44.94 3.36
144 145 2.293677 GCCATGCTGATTCATGAGGAAG 59.706 50.000 5.41 0.00 44.94 3.46
145 146 2.885266 CCATGCTGATTCATGAGGAAGG 59.115 50.000 5.41 0.00 44.94 3.46
146 147 3.434596 CCATGCTGATTCATGAGGAAGGA 60.435 47.826 5.41 0.00 44.94 3.36
147 148 3.555527 TGCTGATTCATGAGGAAGGAG 57.444 47.619 0.00 0.00 39.30 3.69
148 149 3.109928 TGCTGATTCATGAGGAAGGAGA 58.890 45.455 0.00 0.00 39.30 3.71
149 150 3.715315 TGCTGATTCATGAGGAAGGAGAT 59.285 43.478 0.00 0.00 39.30 2.75
150 151 4.165565 TGCTGATTCATGAGGAAGGAGATT 59.834 41.667 0.00 0.00 39.30 2.40
151 152 4.756135 GCTGATTCATGAGGAAGGAGATTC 59.244 45.833 0.00 0.00 39.30 2.52
152 153 4.953667 TGATTCATGAGGAAGGAGATTCG 58.046 43.478 0.00 0.00 39.30 3.34
153 154 3.827008 TTCATGAGGAAGGAGATTCGG 57.173 47.619 0.00 0.00 38.95 4.30
154 155 2.042464 TCATGAGGAAGGAGATTCGGG 58.958 52.381 0.00 0.00 38.95 5.14
155 156 2.042464 CATGAGGAAGGAGATTCGGGA 58.958 52.381 0.00 0.00 38.95 5.14
156 157 1.781786 TGAGGAAGGAGATTCGGGAG 58.218 55.000 0.00 0.00 38.95 4.30
157 158 1.288037 TGAGGAAGGAGATTCGGGAGA 59.712 52.381 0.00 0.00 38.95 3.71
171 172 5.848833 TTCGGGAGAAGAGGATAAAGTAC 57.151 43.478 0.00 0.00 45.39 2.73
172 173 3.881688 TCGGGAGAAGAGGATAAAGTACG 59.118 47.826 0.00 0.00 34.75 3.67
173 174 3.881688 CGGGAGAAGAGGATAAAGTACGA 59.118 47.826 0.00 0.00 0.00 3.43
174 175 4.023878 CGGGAGAAGAGGATAAAGTACGAG 60.024 50.000 0.00 0.00 0.00 4.18
175 176 4.278919 GGGAGAAGAGGATAAAGTACGAGG 59.721 50.000 0.00 0.00 0.00 4.63
176 177 4.261698 GGAGAAGAGGATAAAGTACGAGGC 60.262 50.000 0.00 0.00 0.00 4.70
177 178 3.315749 AGAAGAGGATAAAGTACGAGGCG 59.684 47.826 0.00 0.00 0.00 5.52
178 179 2.928334 AGAGGATAAAGTACGAGGCGA 58.072 47.619 0.00 0.00 0.00 5.54
179 180 2.879646 AGAGGATAAAGTACGAGGCGAG 59.120 50.000 0.00 0.00 0.00 5.03
180 181 1.955080 AGGATAAAGTACGAGGCGAGG 59.045 52.381 0.00 0.00 0.00 4.63
181 182 1.602416 GGATAAAGTACGAGGCGAGGC 60.602 57.143 0.00 0.00 0.00 4.70
182 183 0.030369 ATAAAGTACGAGGCGAGGCG 59.970 55.000 0.00 0.00 0.00 5.52
183 184 1.308069 TAAAGTACGAGGCGAGGCGT 61.308 55.000 0.00 0.00 43.86 5.68
184 185 2.814183 AAAGTACGAGGCGAGGCGTG 62.814 60.000 0.00 0.00 41.35 5.34
185 186 4.849329 GTACGAGGCGAGGCGTGG 62.849 72.222 0.00 0.00 41.35 4.94
194 195 3.286751 GAGGCGTGGCTGTTGCAA 61.287 61.111 0.00 0.00 41.91 4.08
195 196 2.832661 AGGCGTGGCTGTTGCAAA 60.833 55.556 0.00 0.00 41.91 3.68
196 197 2.146073 GAGGCGTGGCTGTTGCAAAT 62.146 55.000 0.00 0.00 41.91 2.32
197 198 0.893270 AGGCGTGGCTGTTGCAAATA 60.893 50.000 0.00 0.00 41.91 1.40
198 199 0.038709 GGCGTGGCTGTTGCAAATAA 60.039 50.000 0.00 0.00 41.91 1.40
199 200 1.404047 GGCGTGGCTGTTGCAAATAAT 60.404 47.619 0.00 0.00 41.91 1.28
200 201 1.655099 GCGTGGCTGTTGCAAATAATG 59.345 47.619 0.00 0.00 41.91 1.90
201 202 2.926159 GCGTGGCTGTTGCAAATAATGT 60.926 45.455 0.00 0.00 41.91 2.71
202 203 2.662637 CGTGGCTGTTGCAAATAATGTG 59.337 45.455 0.00 0.00 41.91 3.21
203 204 2.995258 GTGGCTGTTGCAAATAATGTGG 59.005 45.455 0.00 0.00 41.91 4.17
204 205 2.632028 TGGCTGTTGCAAATAATGTGGT 59.368 40.909 0.00 0.00 41.91 4.16
205 206 2.995258 GGCTGTTGCAAATAATGTGGTG 59.005 45.455 0.00 0.00 41.91 4.17
206 207 2.995258 GCTGTTGCAAATAATGTGGTGG 59.005 45.455 0.00 0.00 39.41 4.61
207 208 3.554752 GCTGTTGCAAATAATGTGGTGGT 60.555 43.478 0.00 0.00 39.41 4.16
208 209 3.987547 TGTTGCAAATAATGTGGTGGTG 58.012 40.909 0.00 0.00 0.00 4.17
209 210 3.244009 TGTTGCAAATAATGTGGTGGTGG 60.244 43.478 0.00 0.00 0.00 4.61
210 211 1.898472 TGCAAATAATGTGGTGGTGGG 59.102 47.619 0.00 0.00 0.00 4.61
211 212 1.206849 GCAAATAATGTGGTGGTGGGG 59.793 52.381 0.00 0.00 0.00 4.96
212 213 2.534990 CAAATAATGTGGTGGTGGGGT 58.465 47.619 0.00 0.00 0.00 4.95
213 214 2.903135 CAAATAATGTGGTGGTGGGGTT 59.097 45.455 0.00 0.00 0.00 4.11
214 215 2.525105 ATAATGTGGTGGTGGGGTTC 57.475 50.000 0.00 0.00 0.00 3.62
215 216 1.149986 TAATGTGGTGGTGGGGTTCA 58.850 50.000 0.00 0.00 0.00 3.18
216 217 0.178964 AATGTGGTGGTGGGGTTCAG 60.179 55.000 0.00 0.00 0.00 3.02
217 218 1.065410 ATGTGGTGGTGGGGTTCAGA 61.065 55.000 0.00 0.00 0.00 3.27
218 219 1.282653 TGTGGTGGTGGGGTTCAGAA 61.283 55.000 0.00 0.00 0.00 3.02
219 220 0.822121 GTGGTGGTGGGGTTCAGAAC 60.822 60.000 4.52 4.52 0.00 3.01
220 221 1.599797 GGTGGTGGGGTTCAGAACG 60.600 63.158 7.22 0.00 0.00 3.95
221 222 1.599797 GTGGTGGGGTTCAGAACGG 60.600 63.158 7.22 0.00 0.00 4.44
222 223 1.766864 TGGTGGGGTTCAGAACGGA 60.767 57.895 7.22 0.00 0.00 4.69
223 224 1.302271 GGTGGGGTTCAGAACGGAC 60.302 63.158 7.22 3.73 0.00 4.79
224 225 1.666872 GTGGGGTTCAGAACGGACG 60.667 63.158 7.22 0.00 0.00 4.79
225 226 2.741211 GGGGTTCAGAACGGACGC 60.741 66.667 7.22 0.00 0.00 5.19
226 227 3.110178 GGGTTCAGAACGGACGCG 61.110 66.667 3.53 3.53 0.00 6.01
227 228 2.355481 GGTTCAGAACGGACGCGT 60.355 61.111 13.85 13.85 0.00 6.01
228 229 2.654912 GGTTCAGAACGGACGCGTG 61.655 63.158 20.70 5.54 0.00 5.34
229 230 2.355363 TTCAGAACGGACGCGTGG 60.355 61.111 20.70 11.49 0.00 4.94
260 261 4.794439 CGGCGGACATGAGCGTGA 62.794 66.667 0.00 0.00 0.00 4.35
261 262 2.202932 GGCGGACATGAGCGTGAT 60.203 61.111 0.00 0.00 0.00 3.06
262 263 1.815421 GGCGGACATGAGCGTGATT 60.815 57.895 0.00 0.00 0.00 2.57
263 264 0.529773 GGCGGACATGAGCGTGATTA 60.530 55.000 0.00 0.00 0.00 1.75
264 265 1.502231 GCGGACATGAGCGTGATTAT 58.498 50.000 0.00 0.00 0.00 1.28
265 266 1.457303 GCGGACATGAGCGTGATTATC 59.543 52.381 0.00 0.00 0.00 1.75
266 267 2.061773 CGGACATGAGCGTGATTATCC 58.938 52.381 0.00 0.00 0.00 2.59
267 268 2.061773 GGACATGAGCGTGATTATCCG 58.938 52.381 0.00 0.00 0.00 4.18
272 273 3.041940 GCGTGATTATCCGCCGGG 61.042 66.667 1.90 0.00 43.96 5.73
273 274 2.420043 CGTGATTATCCGCCGGGT 59.580 61.111 1.90 0.00 33.83 5.28
274 275 1.954146 CGTGATTATCCGCCGGGTG 60.954 63.158 1.90 0.00 33.83 4.61
275 276 1.444250 GTGATTATCCGCCGGGTGA 59.556 57.895 9.67 0.00 33.83 4.02
276 277 0.034896 GTGATTATCCGCCGGGTGAT 59.965 55.000 9.67 0.00 33.83 3.06
277 278 0.320374 TGATTATCCGCCGGGTGATC 59.680 55.000 13.81 13.81 33.83 2.92
278 279 0.391263 GATTATCCGCCGGGTGATCC 60.391 60.000 9.89 0.00 33.83 3.36
289 290 1.296727 GGGTGATCCGAATCGTTTCC 58.703 55.000 0.82 0.00 34.39 3.13
290 291 1.296727 GGTGATCCGAATCGTTTCCC 58.703 55.000 0.82 0.00 34.39 3.97
291 292 1.134491 GGTGATCCGAATCGTTTCCCT 60.134 52.381 0.82 0.00 34.39 4.20
292 293 2.101917 GGTGATCCGAATCGTTTCCCTA 59.898 50.000 0.82 0.00 34.39 3.53
293 294 3.244112 GGTGATCCGAATCGTTTCCCTAT 60.244 47.826 0.82 0.00 34.39 2.57
294 295 4.021719 GGTGATCCGAATCGTTTCCCTATA 60.022 45.833 0.82 0.00 34.39 1.31
295 296 5.510179 GGTGATCCGAATCGTTTCCCTATAA 60.510 44.000 0.82 0.00 34.39 0.98
296 297 6.164176 GTGATCCGAATCGTTTCCCTATAAT 58.836 40.000 0.82 0.00 34.39 1.28
297 298 6.649557 GTGATCCGAATCGTTTCCCTATAATT 59.350 38.462 0.82 0.00 34.39 1.40
298 299 7.816031 GTGATCCGAATCGTTTCCCTATAATTA 59.184 37.037 0.82 0.00 34.39 1.40
299 300 8.537016 TGATCCGAATCGTTTCCCTATAATTAT 58.463 33.333 0.82 2.97 34.39 1.28
300 301 9.379791 GATCCGAATCGTTTCCCTATAATTATT 57.620 33.333 2.68 0.00 0.00 1.40
301 302 8.767478 TCCGAATCGTTTCCCTATAATTATTC 57.233 34.615 2.68 0.00 0.00 1.75
302 303 7.820872 TCCGAATCGTTTCCCTATAATTATTCC 59.179 37.037 2.68 0.00 0.00 3.01
303 304 7.604927 CCGAATCGTTTCCCTATAATTATTCCA 59.395 37.037 2.68 0.00 0.00 3.53
304 305 9.162764 CGAATCGTTTCCCTATAATTATTCCAT 57.837 33.333 2.68 0.00 0.00 3.41
307 308 8.842358 TCGTTTCCCTATAATTATTCCATGAC 57.158 34.615 2.68 0.00 0.00 3.06
308 309 7.881232 TCGTTTCCCTATAATTATTCCATGACC 59.119 37.037 2.68 0.00 0.00 4.02
309 310 7.120726 CGTTTCCCTATAATTATTCCATGACCC 59.879 40.741 2.68 0.00 0.00 4.46
310 311 6.652205 TCCCTATAATTATTCCATGACCCC 57.348 41.667 2.68 0.00 0.00 4.95
311 312 5.190925 TCCCTATAATTATTCCATGACCCCG 59.809 44.000 2.68 0.00 0.00 5.73
312 313 5.045140 CCCTATAATTATTCCATGACCCCGT 60.045 44.000 2.68 0.00 0.00 5.28
313 314 5.880332 CCTATAATTATTCCATGACCCCGTG 59.120 44.000 2.68 0.00 0.00 4.94
314 315 3.943671 AATTATTCCATGACCCCGTGA 57.056 42.857 0.00 0.00 0.00 4.35
315 316 3.943671 ATTATTCCATGACCCCGTGAA 57.056 42.857 0.00 0.00 0.00 3.18
316 317 3.722908 TTATTCCATGACCCCGTGAAA 57.277 42.857 0.00 0.00 0.00 2.69
317 318 2.595750 ATTCCATGACCCCGTGAAAA 57.404 45.000 0.00 0.00 0.00 2.29
318 319 1.904287 TTCCATGACCCCGTGAAAAG 58.096 50.000 0.00 0.00 0.00 2.27
319 320 1.060729 TCCATGACCCCGTGAAAAGA 58.939 50.000 0.00 0.00 0.00 2.52
320 321 1.633432 TCCATGACCCCGTGAAAAGAT 59.367 47.619 0.00 0.00 0.00 2.40
321 322 2.841266 TCCATGACCCCGTGAAAAGATA 59.159 45.455 0.00 0.00 0.00 1.98
322 323 3.264706 TCCATGACCCCGTGAAAAGATAA 59.735 43.478 0.00 0.00 0.00 1.75
323 324 3.627577 CCATGACCCCGTGAAAAGATAAG 59.372 47.826 0.00 0.00 0.00 1.73
324 325 4.261801 CATGACCCCGTGAAAAGATAAGT 58.738 43.478 0.00 0.00 0.00 2.24
325 326 5.424757 CATGACCCCGTGAAAAGATAAGTA 58.575 41.667 0.00 0.00 0.00 2.24
326 327 4.824289 TGACCCCGTGAAAAGATAAGTAC 58.176 43.478 0.00 0.00 0.00 2.73
327 328 4.529377 TGACCCCGTGAAAAGATAAGTACT 59.471 41.667 0.00 0.00 0.00 2.73
328 329 5.082251 ACCCCGTGAAAAGATAAGTACTC 57.918 43.478 0.00 0.00 0.00 2.59
329 330 4.081254 ACCCCGTGAAAAGATAAGTACTCC 60.081 45.833 0.00 0.00 0.00 3.85
330 331 4.439968 CCCGTGAAAAGATAAGTACTCCC 58.560 47.826 0.00 0.00 0.00 4.30
331 332 4.161754 CCCGTGAAAAGATAAGTACTCCCT 59.838 45.833 0.00 0.00 0.00 4.20
332 333 5.349809 CCGTGAAAAGATAAGTACTCCCTC 58.650 45.833 0.00 0.00 0.00 4.30
333 334 5.349809 CGTGAAAAGATAAGTACTCCCTCC 58.650 45.833 0.00 0.00 0.00 4.30
334 335 5.349809 GTGAAAAGATAAGTACTCCCTCCG 58.650 45.833 0.00 0.00 0.00 4.63
335 336 4.404715 TGAAAAGATAAGTACTCCCTCCGG 59.595 45.833 0.00 0.00 0.00 5.14
336 337 1.998222 AGATAAGTACTCCCTCCGGC 58.002 55.000 0.00 0.00 0.00 6.13
337 338 0.967662 GATAAGTACTCCCTCCGGCC 59.032 60.000 0.00 0.00 0.00 6.13
338 339 0.471401 ATAAGTACTCCCTCCGGCCC 60.471 60.000 0.00 0.00 0.00 5.80
339 340 1.877672 TAAGTACTCCCTCCGGCCCA 61.878 60.000 0.00 0.00 0.00 5.36
340 341 2.446036 GTACTCCCTCCGGCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
341 342 1.152398 GTACTCCCTCCGGCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
342 343 0.761702 GTACTCCCTCCGGCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
343 344 0.192566 TACTCCCTCCGGCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
344 345 1.376466 CTCCCTCCGGCCCATAATG 59.624 63.158 0.00 0.00 0.00 1.90
345 346 1.385347 TCCCTCCGGCCCATAATGT 60.385 57.895 0.00 0.00 0.00 2.71
346 347 0.104882 TCCCTCCGGCCCATAATGTA 60.105 55.000 0.00 0.00 0.00 2.29
347 348 0.768622 CCCTCCGGCCCATAATGTAA 59.231 55.000 0.00 0.00 0.00 2.41
348 349 1.271379 CCCTCCGGCCCATAATGTAAG 60.271 57.143 0.00 0.00 0.00 2.34
349 350 1.697432 CCTCCGGCCCATAATGTAAGA 59.303 52.381 0.00 0.00 0.00 2.10
350 351 2.550208 CCTCCGGCCCATAATGTAAGAC 60.550 54.545 0.00 0.00 0.00 3.01
351 352 1.069513 TCCGGCCCATAATGTAAGACG 59.930 52.381 0.00 0.00 0.00 4.18
352 353 1.202604 CCGGCCCATAATGTAAGACGT 60.203 52.381 0.00 0.00 0.00 4.34
353 354 2.557317 CGGCCCATAATGTAAGACGTT 58.443 47.619 0.00 0.00 0.00 3.99
354 355 2.940410 CGGCCCATAATGTAAGACGTTT 59.060 45.455 0.00 0.00 0.00 3.60
355 356 3.375922 CGGCCCATAATGTAAGACGTTTT 59.624 43.478 0.00 0.00 0.00 2.43
356 357 4.142556 CGGCCCATAATGTAAGACGTTTTT 60.143 41.667 0.00 0.00 0.00 1.94
404 405 9.597681 AAAGTCTTATATTATAGGACGGAAGGA 57.402 33.333 16.06 0.00 32.86 3.36
405 406 8.810990 AGTCTTATATTATAGGACGGAAGGAG 57.189 38.462 16.06 0.00 32.86 3.69
406 407 8.392479 AGTCTTATATTATAGGACGGAAGGAGT 58.608 37.037 16.06 0.00 32.86 3.85
407 408 9.678260 GTCTTATATTATAGGACGGAAGGAGTA 57.322 37.037 9.42 0.00 0.00 2.59
417 418 6.954232 AGGACGGAAGGAGTAATTTATTTCA 58.046 36.000 0.00 0.00 0.00 2.69
418 419 7.574607 AGGACGGAAGGAGTAATTTATTTCAT 58.425 34.615 0.00 0.00 0.00 2.57
419 420 7.499232 AGGACGGAAGGAGTAATTTATTTCATG 59.501 37.037 0.00 0.00 0.00 3.07
420 421 7.497909 GGACGGAAGGAGTAATTTATTTCATGA 59.502 37.037 0.00 0.00 0.00 3.07
421 422 8.801882 ACGGAAGGAGTAATTTATTTCATGAA 57.198 30.769 3.38 3.38 0.00 2.57
422 423 9.238368 ACGGAAGGAGTAATTTATTTCATGAAA 57.762 29.630 22.52 22.52 34.46 2.69
438 439 9.865321 ATTTCATGAAAAGGACATTATCAACTG 57.135 29.630 23.91 0.00 33.56 3.16
439 440 7.395190 TCATGAAAAGGACATTATCAACTGG 57.605 36.000 0.00 0.00 0.00 4.00
440 441 7.174413 TCATGAAAAGGACATTATCAACTGGA 58.826 34.615 0.00 0.00 0.00 3.86
441 442 7.337689 TCATGAAAAGGACATTATCAACTGGAG 59.662 37.037 0.00 0.00 0.00 3.86
442 443 5.415701 TGAAAAGGACATTATCAACTGGAGC 59.584 40.000 0.00 0.00 0.00 4.70
443 444 3.185246 AGGACATTATCAACTGGAGCG 57.815 47.619 0.00 0.00 0.00 5.03
444 445 2.501723 AGGACATTATCAACTGGAGCGT 59.498 45.455 0.00 0.00 0.00 5.07
445 446 2.866762 GGACATTATCAACTGGAGCGTC 59.133 50.000 0.00 0.00 0.00 5.19
446 447 3.430929 GGACATTATCAACTGGAGCGTCT 60.431 47.826 0.00 0.00 0.00 4.18
447 448 3.786635 ACATTATCAACTGGAGCGTCTC 58.213 45.455 0.00 0.00 0.00 3.36
448 449 3.449018 ACATTATCAACTGGAGCGTCTCT 59.551 43.478 6.78 0.00 0.00 3.10
449 450 4.081420 ACATTATCAACTGGAGCGTCTCTT 60.081 41.667 6.78 0.00 0.00 2.85
450 451 4.537135 TTATCAACTGGAGCGTCTCTTT 57.463 40.909 6.78 0.00 0.00 2.52
451 452 2.440539 TCAACTGGAGCGTCTCTTTC 57.559 50.000 6.78 0.00 0.00 2.62
452 453 1.964223 TCAACTGGAGCGTCTCTTTCT 59.036 47.619 6.78 0.00 0.00 2.52
453 454 2.029828 TCAACTGGAGCGTCTCTTTCTC 60.030 50.000 6.78 0.00 0.00 2.87
454 455 1.917872 ACTGGAGCGTCTCTTTCTCT 58.082 50.000 6.78 0.00 0.00 3.10
455 456 1.816224 ACTGGAGCGTCTCTTTCTCTC 59.184 52.381 6.78 0.00 0.00 3.20
456 457 1.134175 CTGGAGCGTCTCTTTCTCTCC 59.866 57.143 6.78 0.00 42.67 3.71
457 458 1.178276 GGAGCGTCTCTTTCTCTCCA 58.822 55.000 6.78 0.00 42.10 3.86
458 459 1.546476 GGAGCGTCTCTTTCTCTCCAA 59.454 52.381 6.78 0.00 42.10 3.53
459 460 2.416701 GGAGCGTCTCTTTCTCTCCAAG 60.417 54.545 6.78 0.00 42.10 3.61
460 461 2.230266 GAGCGTCTCTTTCTCTCCAAGT 59.770 50.000 0.37 0.00 0.00 3.16
461 462 2.230266 AGCGTCTCTTTCTCTCCAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
462 463 2.857618 CGTCTCTTTCTCTCCAAGTCG 58.142 52.381 0.00 0.00 0.00 4.18
463 464 2.601804 GTCTCTTTCTCTCCAAGTCGC 58.398 52.381 0.00 0.00 0.00 5.19
464 465 2.029828 GTCTCTTTCTCTCCAAGTCGCA 60.030 50.000 0.00 0.00 0.00 5.10
465 466 2.628178 TCTCTTTCTCTCCAAGTCGCAA 59.372 45.455 0.00 0.00 0.00 4.85
466 467 3.069586 TCTCTTTCTCTCCAAGTCGCAAA 59.930 43.478 0.00 0.00 0.00 3.68
467 468 3.804036 TCTTTCTCTCCAAGTCGCAAAA 58.196 40.909 0.00 0.00 0.00 2.44
468 469 4.196193 TCTTTCTCTCCAAGTCGCAAAAA 58.804 39.130 0.00 0.00 0.00 1.94
862 863 1.303317 CAAACCCTAAGCCCTGCGT 60.303 57.895 0.00 0.00 0.00 5.24
921 924 4.873129 TTGCCTCGCGCGATCCTC 62.873 66.667 34.86 21.20 42.08 3.71
1244 1250 1.153449 TGCGCCGTTTATCCAGAGG 60.153 57.895 4.18 0.00 0.00 3.69
1254 1260 0.108585 TATCCAGAGGGCCAATTCGC 59.891 55.000 6.18 0.00 0.00 4.70
1284 1290 2.709475 CTTGTAATGCCCGCTCGC 59.291 61.111 0.00 0.00 0.00 5.03
1391 1397 4.034975 GTGGCATCTTACTTCATTGAGCTC 59.965 45.833 6.82 6.82 0.00 4.09
1410 1416 1.414181 TCCTCGGGAATGATTCTGCTC 59.586 52.381 5.03 0.00 0.00 4.26
1437 1444 8.288812 TGGATACTGGAGAAATGGGAATTTTAT 58.711 33.333 0.00 0.00 37.61 1.40
1444 1452 7.769970 TGGAGAAATGGGAATTTTATGCATTTC 59.230 33.333 3.54 1.46 37.65 2.17
1650 1658 1.227823 CAGTGCTGAACCCGGTTGA 60.228 57.895 7.78 0.00 0.00 3.18
1660 1668 3.869272 CCGGTTGAGCTCATGCGC 61.869 66.667 19.04 0.00 45.42 6.09
1661 1669 2.816958 CGGTTGAGCTCATGCGCT 60.817 61.111 19.04 10.58 45.42 5.92
1662 1670 1.519234 CGGTTGAGCTCATGCGCTA 60.519 57.895 19.04 0.00 45.42 4.26
1664 1672 0.179100 GGTTGAGCTCATGCGCTAGA 60.179 55.000 19.04 5.48 45.42 2.43
1665 1673 1.539929 GGTTGAGCTCATGCGCTAGAT 60.540 52.381 19.04 1.57 45.42 1.98
1666 1674 2.208431 GTTGAGCTCATGCGCTAGATT 58.792 47.619 19.04 0.00 45.42 2.40
1667 1675 2.609427 TGAGCTCATGCGCTAGATTT 57.391 45.000 13.74 0.00 45.42 2.17
1669 1677 3.273434 TGAGCTCATGCGCTAGATTTTT 58.727 40.909 13.74 0.00 45.42 1.94
1711 1719 7.778382 ACTGGTTTGGTCTATATGGGTAAAATC 59.222 37.037 0.00 0.00 0.00 2.17
1713 1721 8.285891 TGGTTTGGTCTATATGGGTAAAATCAT 58.714 33.333 0.00 0.00 0.00 2.45
1872 1885 1.490574 ATGAAGAAGGGCTACGAGCT 58.509 50.000 6.78 0.00 41.99 4.09
2038 2052 8.934825 TGTGCTTAATTTGATTAATTTTGAGGC 58.065 29.630 0.00 0.00 37.60 4.70
2410 2425 3.868757 AGCGTTCTTGACATACTGCTA 57.131 42.857 0.00 0.00 0.00 3.49
2478 2494 1.394917 CAAGAGCGAACATACACAGCC 59.605 52.381 0.00 0.00 0.00 4.85
2485 2501 2.285220 CGAACATACACAGCCTGCATAC 59.715 50.000 0.00 0.00 0.00 2.39
2494 2510 1.768077 GCCTGCATACTCTCCCCCT 60.768 63.158 0.00 0.00 0.00 4.79
2534 2552 5.902613 TTTATTTCCTTGCAGTCAGGATG 57.097 39.130 6.45 0.00 37.54 3.51
2537 2555 1.077212 CCTTGCAGTCAGGATGGGG 60.077 63.158 0.00 0.00 36.16 4.96
2577 2595 5.008613 GCATACTTGAAGACTGTTTCCAACA 59.991 40.000 0.00 0.00 39.52 3.33
2599 2617 1.270305 TGCCTCACAGTGTTCAGCTAC 60.270 52.381 0.00 0.00 0.00 3.58
2741 2764 4.019591 GTCTTGGTCCCACTTTACTGGTAT 60.020 45.833 0.00 0.00 0.00 2.73
2781 2804 7.816945 ATTTGATTTTCCAGTTTATTGAGCG 57.183 32.000 0.00 0.00 0.00 5.03
2786 2809 4.759516 TTCCAGTTTATTGAGCGTTTCC 57.240 40.909 0.00 0.00 0.00 3.13
2827 2850 6.073447 TGGCTATTCTTTGAAATACAGGGA 57.927 37.500 0.00 0.00 0.00 4.20
2925 2948 3.652057 ACAGGAAGGATACATGTTGGG 57.348 47.619 2.30 0.00 41.41 4.12
3020 3043 2.435372 TCAGTTTGGCTTGTGGAAGT 57.565 45.000 0.00 0.00 0.00 3.01
3026 3049 2.727123 TGGCTTGTGGAAGTCTTTCA 57.273 45.000 0.00 0.00 34.63 2.69
3133 3156 4.080695 TCAGATCCTCAGAAACTCATTGGG 60.081 45.833 0.00 0.00 0.00 4.12
3136 3159 1.089920 CTCAGAAACTCATTGGGCCG 58.910 55.000 0.00 0.00 0.00 6.13
3137 3160 0.400213 TCAGAAACTCATTGGGCCGT 59.600 50.000 0.00 0.00 0.00 5.68
3233 3260 5.931294 ACTCTCTAGATCGTCAATGGTAGA 58.069 41.667 0.00 0.00 0.00 2.59
3401 3431 3.056962 TGTTAGCCAAACGGTACATACGA 60.057 43.478 0.00 0.00 41.30 3.43
3432 3462 6.073447 TGTTAGCCAAAAGGGATTATCAGA 57.927 37.500 0.00 0.00 40.01 3.27
3447 3477 7.147846 GGGATTATCAGAATTGTCCACAAATGT 60.148 37.037 0.00 0.00 39.55 2.71
3620 3650 7.859325 TTATTACTTGACACTTGCCTATTCC 57.141 36.000 0.00 0.00 0.00 3.01
3746 3791 5.304686 TGGTCCTGTCAAACTTAGTGAAT 57.695 39.130 0.00 0.00 0.00 2.57
3974 4019 2.285602 CGTCGGCCTCATTTTTATGACG 60.286 50.000 0.00 4.53 41.34 4.35
4003 4048 2.810274 CACTGAAGTCCATGTTCACAGG 59.190 50.000 0.00 0.00 30.69 4.00
4081 4126 0.255890 GGGCCAGAGTAGCATTGGAA 59.744 55.000 4.39 0.00 33.76 3.53
4187 4232 5.103000 ACGTAGCAGTATCATCAAACAGTC 58.897 41.667 0.00 0.00 0.00 3.51
4188 4233 5.105716 ACGTAGCAGTATCATCAAACAGTCT 60.106 40.000 0.00 0.00 0.00 3.24
4194 4239 8.671921 AGCAGTATCATCAAACAGTCTTTTATG 58.328 33.333 0.00 0.00 0.00 1.90
4317 4362 5.950544 TCAGTTGGTAATGTACTGGCTAT 57.049 39.130 0.00 0.00 39.71 2.97
4427 4472 5.984926 AGTGATTTTGGTTGTAACATTGCAG 59.015 36.000 0.00 0.00 0.00 4.41
4445 4490 3.006430 TGCAGTTAGTCTTGTCATTCGGA 59.994 43.478 0.00 0.00 0.00 4.55
4507 4552 7.011482 GCCTGTAATGTACCTCAATTGTAGAAG 59.989 40.741 5.13 0.00 0.00 2.85
4523 4568 4.471386 TGTAGAAGGCCAAAGCTCTATCTT 59.529 41.667 5.01 0.00 39.73 2.40
4598 4647 6.892456 TCCTCTAGTGATAAACTGTCTGATGT 59.108 38.462 0.00 0.00 40.26 3.06
4628 4677 9.092876 GATCTTCTCTTATGTTTAACTGTCTGG 57.907 37.037 0.00 0.00 0.00 3.86
4644 4693 1.277842 TCTGGTGTACCGATGTTGCAT 59.722 47.619 0.00 0.00 39.43 3.96
4645 4694 2.498078 TCTGGTGTACCGATGTTGCATA 59.502 45.455 0.00 0.00 39.43 3.14
4678 4727 6.912591 GGTCTGACATTGTAAAAGTGTTCAAG 59.087 38.462 10.38 0.00 0.00 3.02
4697 4746 1.229209 TTCCTCCTGCCTCGTCCTT 60.229 57.895 0.00 0.00 0.00 3.36
4717 4766 5.822519 TCCTTGCATGGTGATTATGTACTTC 59.177 40.000 17.54 0.00 0.00 3.01
4727 4776 9.862149 TGGTGATTATGTACTTCTATCAGAGTA 57.138 33.333 0.00 0.00 0.00 2.59
4737 4786 9.738832 GTACTTCTATCAGAGTATTGGAAGTTC 57.261 37.037 10.02 0.00 41.06 3.01
4768 4817 8.782339 TTACTTTAGCTGTTTATTACTGGACC 57.218 34.615 0.00 0.00 0.00 4.46
4775 4824 5.527582 GCTGTTTATTACTGGACCGATTGAT 59.472 40.000 0.00 0.00 0.00 2.57
4805 4854 3.282021 TGTTTCTTATCCTGCATGAGCC 58.718 45.455 0.00 0.00 41.13 4.70
4831 4880 6.457799 GGTGGCCTTCTACATAAAAACATACG 60.458 42.308 3.32 0.00 0.00 3.06
4859 4908 4.510038 ACTCATGGTGAAGACAAAATGC 57.490 40.909 0.00 0.00 0.00 3.56
4910 4959 0.179468 TTATGTTGTAGAGGCCGCCC 59.821 55.000 5.55 0.00 0.00 6.13
4924 4973 2.827642 GCCCAGCATCAGTCCTGC 60.828 66.667 0.00 0.00 39.97 4.85
4977 5026 1.609072 CGTCAACTGTGTCTCCTCTCA 59.391 52.381 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.363306 ACTGGCATGTTTCCTGTGAA 57.637 45.000 0.00 0.00 34.97 3.18
2 3 0.599558 CCACTGGCATGTTTCCTGTG 59.400 55.000 16.11 16.11 46.59 3.66
15 16 1.821061 AAGGACTCGACTGCCACTGG 61.821 60.000 0.00 0.00 0.00 4.00
16 17 0.389166 GAAGGACTCGACTGCCACTG 60.389 60.000 0.00 0.00 0.00 3.66
17 18 1.968310 GAAGGACTCGACTGCCACT 59.032 57.895 0.00 0.00 0.00 4.00
18 19 4.580835 GAAGGACTCGACTGCCAC 57.419 61.111 0.00 0.00 0.00 5.01
44 45 4.767255 AGCTCGCCGGGAAAGCAG 62.767 66.667 19.27 0.13 38.51 4.24
45 46 4.760047 GAGCTCGCCGGGAAAGCA 62.760 66.667 19.27 0.00 38.51 3.91
46 47 4.760047 TGAGCTCGCCGGGAAAGC 62.760 66.667 9.64 11.82 36.27 3.51
47 48 2.047274 TTGAGCTCGCCGGGAAAG 60.047 61.111 9.64 0.00 0.00 2.62
48 49 2.047274 CTTGAGCTCGCCGGGAAA 60.047 61.111 9.64 0.00 0.00 3.13
49 50 4.760047 GCTTGAGCTCGCCGGGAA 62.760 66.667 9.64 0.00 38.21 3.97
54 55 1.028868 AAATCTGGCTTGAGCTCGCC 61.029 55.000 21.88 21.88 46.46 5.54
55 56 0.098376 CAAATCTGGCTTGAGCTCGC 59.902 55.000 9.64 7.17 41.70 5.03
56 57 0.098376 GCAAATCTGGCTTGAGCTCG 59.902 55.000 9.64 0.00 41.70 5.03
57 58 1.135460 GTGCAAATCTGGCTTGAGCTC 60.135 52.381 6.82 6.82 41.70 4.09
58 59 0.886563 GTGCAAATCTGGCTTGAGCT 59.113 50.000 2.66 0.00 41.70 4.09
59 60 0.108945 GGTGCAAATCTGGCTTGAGC 60.109 55.000 0.00 0.00 41.14 4.26
60 61 0.529378 GGGTGCAAATCTGGCTTGAG 59.471 55.000 0.00 0.00 0.00 3.02
61 62 0.178967 TGGGTGCAAATCTGGCTTGA 60.179 50.000 0.00 0.00 0.00 3.02
62 63 0.245539 CTGGGTGCAAATCTGGCTTG 59.754 55.000 0.00 0.00 0.00 4.01
63 64 0.901580 CCTGGGTGCAAATCTGGCTT 60.902 55.000 0.00 0.00 0.00 4.35
64 65 1.304713 CCTGGGTGCAAATCTGGCT 60.305 57.895 0.00 0.00 0.00 4.75
65 66 2.353610 CCCTGGGTGCAAATCTGGC 61.354 63.158 3.97 0.00 0.00 4.85
66 67 0.251742 TTCCCTGGGTGCAAATCTGG 60.252 55.000 13.56 0.00 0.00 3.86
67 68 1.180029 CTTCCCTGGGTGCAAATCTG 58.820 55.000 13.56 0.00 0.00 2.90
68 69 0.040204 CCTTCCCTGGGTGCAAATCT 59.960 55.000 13.56 0.00 0.00 2.40
69 70 0.039618 TCCTTCCCTGGGTGCAAATC 59.960 55.000 13.56 0.00 0.00 2.17
70 71 0.040204 CTCCTTCCCTGGGTGCAAAT 59.960 55.000 13.56 0.00 0.00 2.32
71 72 1.065410 TCTCCTTCCCTGGGTGCAAA 61.065 55.000 13.56 0.00 0.00 3.68
72 73 1.463214 TCTCCTTCCCTGGGTGCAA 60.463 57.895 13.56 0.00 0.00 4.08
73 74 1.920325 CTCTCCTTCCCTGGGTGCA 60.920 63.158 13.56 0.00 0.00 4.57
74 75 0.985490 ATCTCTCCTTCCCTGGGTGC 60.985 60.000 13.56 0.00 0.00 5.01
75 76 0.835941 CATCTCTCCTTCCCTGGGTG 59.164 60.000 13.56 7.06 0.00 4.61
76 77 0.419459 ACATCTCTCCTTCCCTGGGT 59.581 55.000 13.56 0.00 0.00 4.51
77 78 0.835941 CACATCTCTCCTTCCCTGGG 59.164 60.000 6.33 6.33 0.00 4.45
78 79 1.761784 CTCACATCTCTCCTTCCCTGG 59.238 57.143 0.00 0.00 0.00 4.45
79 80 2.465813 ACTCACATCTCTCCTTCCCTG 58.534 52.381 0.00 0.00 0.00 4.45
80 81 2.938428 ACTCACATCTCTCCTTCCCT 57.062 50.000 0.00 0.00 0.00 4.20
81 82 2.364002 GCTACTCACATCTCTCCTTCCC 59.636 54.545 0.00 0.00 0.00 3.97
82 83 3.027412 TGCTACTCACATCTCTCCTTCC 58.973 50.000 0.00 0.00 0.00 3.46
83 84 3.488384 CGTGCTACTCACATCTCTCCTTC 60.488 52.174 0.00 0.00 45.92 3.46
84 85 2.425312 CGTGCTACTCACATCTCTCCTT 59.575 50.000 0.00 0.00 45.92 3.36
85 86 2.020720 CGTGCTACTCACATCTCTCCT 58.979 52.381 0.00 0.00 45.92 3.69
86 87 1.066303 CCGTGCTACTCACATCTCTCC 59.934 57.143 0.00 0.00 45.92 3.71
87 88 1.066303 CCCGTGCTACTCACATCTCTC 59.934 57.143 0.00 0.00 45.92 3.20
88 89 1.107114 CCCGTGCTACTCACATCTCT 58.893 55.000 0.00 0.00 45.92 3.10
89 90 0.103208 CCCCGTGCTACTCACATCTC 59.897 60.000 0.00 0.00 45.92 2.75
90 91 0.324368 TCCCCGTGCTACTCACATCT 60.324 55.000 0.00 0.00 45.92 2.90
91 92 0.535335 TTCCCCGTGCTACTCACATC 59.465 55.000 0.00 0.00 45.92 3.06
92 93 0.249398 GTTCCCCGTGCTACTCACAT 59.751 55.000 0.00 0.00 45.92 3.21
93 94 1.669440 GTTCCCCGTGCTACTCACA 59.331 57.895 0.00 0.00 45.92 3.58
94 95 1.079336 GGTTCCCCGTGCTACTCAC 60.079 63.158 0.00 0.00 42.23 3.51
95 96 3.384348 GGTTCCCCGTGCTACTCA 58.616 61.111 0.00 0.00 0.00 3.41
114 115 1.381928 ATCAGCATGGCCAAGCGAAG 61.382 55.000 25.99 19.48 36.16 3.79
115 116 0.966875 AATCAGCATGGCCAAGCGAA 60.967 50.000 25.99 18.48 36.16 4.70
116 117 1.378882 GAATCAGCATGGCCAAGCGA 61.379 55.000 25.99 24.17 36.16 4.93
117 118 1.065273 GAATCAGCATGGCCAAGCG 59.935 57.895 25.99 20.17 36.16 4.68
118 119 0.750850 ATGAATCAGCATGGCCAAGC 59.249 50.000 25.22 25.22 36.16 4.01
119 120 2.028876 TCATGAATCAGCATGGCCAAG 58.971 47.619 10.96 6.55 44.44 3.61
120 121 2.028876 CTCATGAATCAGCATGGCCAA 58.971 47.619 10.96 0.00 44.44 4.52
121 122 1.687563 CTCATGAATCAGCATGGCCA 58.312 50.000 8.56 8.56 44.44 5.36
122 123 0.959553 CCTCATGAATCAGCATGGCC 59.040 55.000 0.00 0.00 44.44 5.36
123 124 1.977056 TCCTCATGAATCAGCATGGC 58.023 50.000 0.00 0.00 44.44 4.40
124 125 2.885266 CCTTCCTCATGAATCAGCATGG 59.115 50.000 0.00 0.00 44.44 3.66
125 126 3.815962 CTCCTTCCTCATGAATCAGCATG 59.184 47.826 0.00 0.00 45.41 4.06
126 127 3.715315 TCTCCTTCCTCATGAATCAGCAT 59.285 43.478 0.00 0.00 31.06 3.79
127 128 3.109928 TCTCCTTCCTCATGAATCAGCA 58.890 45.455 0.00 0.00 31.06 4.41
128 129 3.834489 TCTCCTTCCTCATGAATCAGC 57.166 47.619 0.00 0.00 31.06 4.26
129 130 4.989797 CGAATCTCCTTCCTCATGAATCAG 59.010 45.833 0.00 0.00 31.06 2.90
130 131 4.202295 CCGAATCTCCTTCCTCATGAATCA 60.202 45.833 0.00 0.00 31.06 2.57
131 132 4.314121 CCGAATCTCCTTCCTCATGAATC 58.686 47.826 0.00 0.00 31.06 2.52
132 133 3.072184 CCCGAATCTCCTTCCTCATGAAT 59.928 47.826 0.00 0.00 31.06 2.57
133 134 2.435805 CCCGAATCTCCTTCCTCATGAA 59.564 50.000 0.00 0.00 0.00 2.57
134 135 2.042464 CCCGAATCTCCTTCCTCATGA 58.958 52.381 0.00 0.00 0.00 3.07
135 136 2.036992 CTCCCGAATCTCCTTCCTCATG 59.963 54.545 0.00 0.00 0.00 3.07
136 137 2.091055 TCTCCCGAATCTCCTTCCTCAT 60.091 50.000 0.00 0.00 0.00 2.90
137 138 1.288037 TCTCCCGAATCTCCTTCCTCA 59.712 52.381 0.00 0.00 0.00 3.86
138 139 2.074729 TCTCCCGAATCTCCTTCCTC 57.925 55.000 0.00 0.00 0.00 3.71
139 140 2.023888 TCTTCTCCCGAATCTCCTTCCT 60.024 50.000 0.00 0.00 0.00 3.36
140 141 2.364002 CTCTTCTCCCGAATCTCCTTCC 59.636 54.545 0.00 0.00 0.00 3.46
141 142 2.364002 CCTCTTCTCCCGAATCTCCTTC 59.636 54.545 0.00 0.00 0.00 3.46
142 143 2.023888 TCCTCTTCTCCCGAATCTCCTT 60.024 50.000 0.00 0.00 0.00 3.36
143 144 1.571457 TCCTCTTCTCCCGAATCTCCT 59.429 52.381 0.00 0.00 0.00 3.69
144 145 2.074729 TCCTCTTCTCCCGAATCTCC 57.925 55.000 0.00 0.00 0.00 3.71
145 146 5.303333 ACTTTATCCTCTTCTCCCGAATCTC 59.697 44.000 0.00 0.00 0.00 2.75
146 147 5.212745 ACTTTATCCTCTTCTCCCGAATCT 58.787 41.667 0.00 0.00 0.00 2.40
147 148 5.538849 ACTTTATCCTCTTCTCCCGAATC 57.461 43.478 0.00 0.00 0.00 2.52
148 149 5.009811 CGTACTTTATCCTCTTCTCCCGAAT 59.990 44.000 0.00 0.00 0.00 3.34
149 150 4.337555 CGTACTTTATCCTCTTCTCCCGAA 59.662 45.833 0.00 0.00 0.00 4.30
150 151 3.881688 CGTACTTTATCCTCTTCTCCCGA 59.118 47.826 0.00 0.00 0.00 5.14
151 152 3.881688 TCGTACTTTATCCTCTTCTCCCG 59.118 47.826 0.00 0.00 0.00 5.14
152 153 4.278919 CCTCGTACTTTATCCTCTTCTCCC 59.721 50.000 0.00 0.00 0.00 4.30
153 154 4.261698 GCCTCGTACTTTATCCTCTTCTCC 60.262 50.000 0.00 0.00 0.00 3.71
154 155 4.555116 CGCCTCGTACTTTATCCTCTTCTC 60.555 50.000 0.00 0.00 0.00 2.87
155 156 3.315749 CGCCTCGTACTTTATCCTCTTCT 59.684 47.826 0.00 0.00 0.00 2.85
156 157 3.314635 TCGCCTCGTACTTTATCCTCTTC 59.685 47.826 0.00 0.00 0.00 2.87
157 158 3.285484 TCGCCTCGTACTTTATCCTCTT 58.715 45.455 0.00 0.00 0.00 2.85
158 159 2.879646 CTCGCCTCGTACTTTATCCTCT 59.120 50.000 0.00 0.00 0.00 3.69
159 160 2.030981 CCTCGCCTCGTACTTTATCCTC 60.031 54.545 0.00 0.00 0.00 3.71
160 161 1.955080 CCTCGCCTCGTACTTTATCCT 59.045 52.381 0.00 0.00 0.00 3.24
161 162 1.602416 GCCTCGCCTCGTACTTTATCC 60.602 57.143 0.00 0.00 0.00 2.59
162 163 1.768510 GCCTCGCCTCGTACTTTATC 58.231 55.000 0.00 0.00 0.00 1.75
163 164 0.030369 CGCCTCGCCTCGTACTTTAT 59.970 55.000 0.00 0.00 0.00 1.40
164 165 1.308069 ACGCCTCGCCTCGTACTTTA 61.308 55.000 0.00 0.00 37.14 1.85
165 166 2.181021 CGCCTCGCCTCGTACTTT 59.819 61.111 0.00 0.00 0.00 2.66
166 167 3.060615 ACGCCTCGCCTCGTACTT 61.061 61.111 0.00 0.00 37.14 2.24
167 168 3.812019 CACGCCTCGCCTCGTACT 61.812 66.667 0.00 0.00 37.14 2.73
168 169 4.849329 CCACGCCTCGCCTCGTAC 62.849 72.222 0.00 0.00 37.14 3.67
177 178 2.146073 ATTTGCAACAGCCACGCCTC 62.146 55.000 0.00 0.00 0.00 4.70
178 179 0.893270 TATTTGCAACAGCCACGCCT 60.893 50.000 0.00 0.00 0.00 5.52
179 180 0.038709 TTATTTGCAACAGCCACGCC 60.039 50.000 0.00 0.00 0.00 5.68
180 181 1.655099 CATTATTTGCAACAGCCACGC 59.345 47.619 0.00 0.00 0.00 5.34
181 182 2.662637 CACATTATTTGCAACAGCCACG 59.337 45.455 0.00 0.00 0.00 4.94
182 183 2.995258 CCACATTATTTGCAACAGCCAC 59.005 45.455 0.00 0.00 0.00 5.01
183 184 2.632028 ACCACATTATTTGCAACAGCCA 59.368 40.909 0.00 0.00 0.00 4.75
184 185 2.995258 CACCACATTATTTGCAACAGCC 59.005 45.455 0.00 0.00 0.00 4.85
185 186 2.995258 CCACCACATTATTTGCAACAGC 59.005 45.455 0.00 0.00 0.00 4.40
186 187 3.989167 CACCACCACATTATTTGCAACAG 59.011 43.478 0.00 0.00 0.00 3.16
187 188 3.244009 CCACCACCACATTATTTGCAACA 60.244 43.478 0.00 0.00 0.00 3.33
188 189 3.324993 CCACCACCACATTATTTGCAAC 58.675 45.455 0.00 0.00 0.00 4.17
189 190 2.301296 CCCACCACCACATTATTTGCAA 59.699 45.455 0.00 0.00 0.00 4.08
190 191 1.898472 CCCACCACCACATTATTTGCA 59.102 47.619 0.00 0.00 0.00 4.08
191 192 1.206849 CCCCACCACCACATTATTTGC 59.793 52.381 0.00 0.00 0.00 3.68
192 193 2.534990 ACCCCACCACCACATTATTTG 58.465 47.619 0.00 0.00 0.00 2.32
193 194 3.169908 GAACCCCACCACCACATTATTT 58.830 45.455 0.00 0.00 0.00 1.40
194 195 2.110899 TGAACCCCACCACCACATTATT 59.889 45.455 0.00 0.00 0.00 1.40
195 196 1.713647 TGAACCCCACCACCACATTAT 59.286 47.619 0.00 0.00 0.00 1.28
196 197 1.074727 CTGAACCCCACCACCACATTA 59.925 52.381 0.00 0.00 0.00 1.90
197 198 0.178964 CTGAACCCCACCACCACATT 60.179 55.000 0.00 0.00 0.00 2.71
198 199 1.065410 TCTGAACCCCACCACCACAT 61.065 55.000 0.00 0.00 0.00 3.21
199 200 1.282653 TTCTGAACCCCACCACCACA 61.283 55.000 0.00 0.00 0.00 4.17
200 201 0.822121 GTTCTGAACCCCACCACCAC 60.822 60.000 9.38 0.00 0.00 4.16
201 202 1.534697 GTTCTGAACCCCACCACCA 59.465 57.895 9.38 0.00 0.00 4.17
202 203 1.599797 CGTTCTGAACCCCACCACC 60.600 63.158 14.48 0.00 0.00 4.61
203 204 1.599797 CCGTTCTGAACCCCACCAC 60.600 63.158 14.48 0.00 0.00 4.16
204 205 1.766864 TCCGTTCTGAACCCCACCA 60.767 57.895 14.48 0.00 0.00 4.17
205 206 1.302271 GTCCGTTCTGAACCCCACC 60.302 63.158 14.48 0.00 0.00 4.61
206 207 1.666872 CGTCCGTTCTGAACCCCAC 60.667 63.158 14.48 7.77 0.00 4.61
207 208 2.738480 CGTCCGTTCTGAACCCCA 59.262 61.111 14.48 0.00 0.00 4.96
208 209 2.741211 GCGTCCGTTCTGAACCCC 60.741 66.667 14.48 2.42 0.00 4.95
209 210 3.110178 CGCGTCCGTTCTGAACCC 61.110 66.667 14.48 2.75 0.00 4.11
243 244 4.794439 TCACGCTCATGTCCGCCG 62.794 66.667 7.48 1.04 0.00 6.46
244 245 0.529773 TAATCACGCTCATGTCCGCC 60.530 55.000 7.48 0.00 0.00 6.13
245 246 1.457303 GATAATCACGCTCATGTCCGC 59.543 52.381 7.48 1.91 0.00 5.54
246 247 2.061773 GGATAATCACGCTCATGTCCG 58.938 52.381 6.29 6.29 0.00 4.79
247 248 2.061773 CGGATAATCACGCTCATGTCC 58.938 52.381 0.00 0.00 0.00 4.02
256 257 1.954146 CACCCGGCGGATAATCACG 60.954 63.158 30.79 10.56 0.00 4.35
257 258 0.034896 ATCACCCGGCGGATAATCAC 59.965 55.000 30.79 0.00 0.00 3.06
258 259 0.320374 GATCACCCGGCGGATAATCA 59.680 55.000 30.79 4.87 0.00 2.57
259 260 0.391263 GGATCACCCGGCGGATAATC 60.391 60.000 30.79 23.65 0.00 1.75
260 261 1.677552 GGATCACCCGGCGGATAAT 59.322 57.895 30.79 16.93 0.00 1.28
261 262 3.144285 GGATCACCCGGCGGATAA 58.856 61.111 30.79 12.33 0.00 1.75
270 271 1.296727 GGAAACGATTCGGATCACCC 58.703 55.000 11.29 0.00 36.36 4.61
271 272 1.134491 AGGGAAACGATTCGGATCACC 60.134 52.381 11.29 10.60 36.36 4.02
272 273 2.311124 AGGGAAACGATTCGGATCAC 57.689 50.000 11.29 9.03 36.36 3.06
273 274 5.794726 TTATAGGGAAACGATTCGGATCA 57.205 39.130 11.29 0.00 36.36 2.92
274 275 8.943909 ATAATTATAGGGAAACGATTCGGATC 57.056 34.615 11.29 7.80 36.36 3.36
275 276 9.379791 GAATAATTATAGGGAAACGATTCGGAT 57.620 33.333 11.29 0.00 36.36 4.18
276 277 7.820872 GGAATAATTATAGGGAAACGATTCGGA 59.179 37.037 11.29 0.00 36.36 4.55
277 278 7.604927 TGGAATAATTATAGGGAAACGATTCGG 59.395 37.037 11.29 0.00 36.36 4.30
278 279 8.542497 TGGAATAATTATAGGGAAACGATTCG 57.458 34.615 4.14 4.14 36.36 3.34
281 282 9.449719 GTCATGGAATAATTATAGGGAAACGAT 57.550 33.333 0.00 0.00 0.00 3.73
282 283 7.881232 GGTCATGGAATAATTATAGGGAAACGA 59.119 37.037 0.00 0.00 0.00 3.85
283 284 7.120726 GGGTCATGGAATAATTATAGGGAAACG 59.879 40.741 0.00 0.00 0.00 3.60
284 285 7.396339 GGGGTCATGGAATAATTATAGGGAAAC 59.604 40.741 0.00 0.00 0.00 2.78
285 286 7.475299 GGGGTCATGGAATAATTATAGGGAAA 58.525 38.462 0.00 0.00 0.00 3.13
286 287 6.296778 CGGGGTCATGGAATAATTATAGGGAA 60.297 42.308 0.00 0.00 0.00 3.97
287 288 5.190925 CGGGGTCATGGAATAATTATAGGGA 59.809 44.000 0.00 0.00 0.00 4.20
288 289 5.045140 ACGGGGTCATGGAATAATTATAGGG 60.045 44.000 0.00 0.00 0.00 3.53
289 290 5.880332 CACGGGGTCATGGAATAATTATAGG 59.120 44.000 0.00 0.00 0.00 2.57
290 291 6.707290 TCACGGGGTCATGGAATAATTATAG 58.293 40.000 0.00 0.00 0.00 1.31
291 292 6.689663 TCACGGGGTCATGGAATAATTATA 57.310 37.500 0.00 0.00 0.00 0.98
292 293 5.576563 TCACGGGGTCATGGAATAATTAT 57.423 39.130 0.00 0.00 0.00 1.28
293 294 5.375283 TTCACGGGGTCATGGAATAATTA 57.625 39.130 0.00 0.00 0.00 1.40
294 295 3.943671 TCACGGGGTCATGGAATAATT 57.056 42.857 0.00 0.00 0.00 1.40
295 296 3.943671 TTCACGGGGTCATGGAATAAT 57.056 42.857 0.00 0.00 0.00 1.28
296 297 3.722908 TTTCACGGGGTCATGGAATAA 57.277 42.857 0.00 0.00 0.00 1.40
297 298 3.264706 TCTTTTCACGGGGTCATGGAATA 59.735 43.478 0.00 0.00 0.00 1.75
298 299 2.041081 TCTTTTCACGGGGTCATGGAAT 59.959 45.455 0.00 0.00 0.00 3.01
299 300 1.422024 TCTTTTCACGGGGTCATGGAA 59.578 47.619 0.00 0.00 0.00 3.53
300 301 1.060729 TCTTTTCACGGGGTCATGGA 58.939 50.000 0.00 0.00 0.00 3.41
301 302 2.128771 ATCTTTTCACGGGGTCATGG 57.871 50.000 0.00 0.00 0.00 3.66
302 303 4.261801 ACTTATCTTTTCACGGGGTCATG 58.738 43.478 0.00 0.00 0.00 3.07
303 304 4.569719 ACTTATCTTTTCACGGGGTCAT 57.430 40.909 0.00 0.00 0.00 3.06
304 305 4.529377 AGTACTTATCTTTTCACGGGGTCA 59.471 41.667 0.00 0.00 0.00 4.02
305 306 5.082251 AGTACTTATCTTTTCACGGGGTC 57.918 43.478 0.00 0.00 0.00 4.46
306 307 4.081254 GGAGTACTTATCTTTTCACGGGGT 60.081 45.833 0.00 0.00 0.00 4.95
307 308 4.439968 GGAGTACTTATCTTTTCACGGGG 58.560 47.826 0.00 0.00 0.00 5.73
308 309 4.161754 AGGGAGTACTTATCTTTTCACGGG 59.838 45.833 0.00 0.00 0.00 5.28
309 310 5.340439 AGGGAGTACTTATCTTTTCACGG 57.660 43.478 0.00 0.00 0.00 4.94
310 311 5.349809 GGAGGGAGTACTTATCTTTTCACG 58.650 45.833 0.00 0.00 0.00 4.35
311 312 5.349809 CGGAGGGAGTACTTATCTTTTCAC 58.650 45.833 0.00 0.00 0.00 3.18
312 313 5.593679 CGGAGGGAGTACTTATCTTTTCA 57.406 43.478 0.00 0.00 0.00 2.69
330 331 2.767505 GTCTTACATTATGGGCCGGAG 58.232 52.381 5.05 0.00 0.00 4.63
331 332 1.069513 CGTCTTACATTATGGGCCGGA 59.930 52.381 5.05 0.00 0.00 5.14
332 333 1.202604 ACGTCTTACATTATGGGCCGG 60.203 52.381 0.00 0.00 0.00 6.13
333 334 2.234300 ACGTCTTACATTATGGGCCG 57.766 50.000 0.00 0.00 0.00 6.13
334 335 4.976224 AAAACGTCTTACATTATGGGCC 57.024 40.909 0.00 0.00 0.00 5.80
378 379 9.597681 TCCTTCCGTCCTATAATATAAGACTTT 57.402 33.333 7.26 0.00 0.00 2.66
379 380 9.245481 CTCCTTCCGTCCTATAATATAAGACTT 57.755 37.037 7.26 0.00 0.00 3.01
380 381 8.392479 ACTCCTTCCGTCCTATAATATAAGACT 58.608 37.037 7.26 0.00 0.00 3.24
381 382 8.578448 ACTCCTTCCGTCCTATAATATAAGAC 57.422 38.462 0.12 0.12 0.00 3.01
391 392 8.711170 TGAAATAAATTACTCCTTCCGTCCTAT 58.289 33.333 0.00 0.00 0.00 2.57
392 393 8.081517 TGAAATAAATTACTCCTTCCGTCCTA 57.918 34.615 0.00 0.00 0.00 2.94
393 394 6.954232 TGAAATAAATTACTCCTTCCGTCCT 58.046 36.000 0.00 0.00 0.00 3.85
394 395 7.497909 TCATGAAATAAATTACTCCTTCCGTCC 59.502 37.037 0.00 0.00 0.00 4.79
395 396 8.433421 TCATGAAATAAATTACTCCTTCCGTC 57.567 34.615 0.00 0.00 0.00 4.79
396 397 8.801882 TTCATGAAATAAATTACTCCTTCCGT 57.198 30.769 5.45 0.00 0.00 4.69
412 413 9.865321 CAGTTGATAATGTCCTTTTCATGAAAT 57.135 29.630 21.10 7.49 0.00 2.17
413 414 8.306038 CCAGTTGATAATGTCCTTTTCATGAAA 58.694 33.333 16.91 16.91 0.00 2.69
414 415 7.669304 TCCAGTTGATAATGTCCTTTTCATGAA 59.331 33.333 3.38 3.38 0.00 2.57
415 416 7.174413 TCCAGTTGATAATGTCCTTTTCATGA 58.826 34.615 0.00 0.00 0.00 3.07
416 417 7.395190 TCCAGTTGATAATGTCCTTTTCATG 57.605 36.000 0.00 0.00 0.00 3.07
417 418 6.096001 GCTCCAGTTGATAATGTCCTTTTCAT 59.904 38.462 0.00 0.00 0.00 2.57
418 419 5.415701 GCTCCAGTTGATAATGTCCTTTTCA 59.584 40.000 0.00 0.00 0.00 2.69
419 420 5.447818 CGCTCCAGTTGATAATGTCCTTTTC 60.448 44.000 0.00 0.00 0.00 2.29
420 421 4.396166 CGCTCCAGTTGATAATGTCCTTTT 59.604 41.667 0.00 0.00 0.00 2.27
421 422 3.941483 CGCTCCAGTTGATAATGTCCTTT 59.059 43.478 0.00 0.00 0.00 3.11
422 423 3.055094 ACGCTCCAGTTGATAATGTCCTT 60.055 43.478 0.00 0.00 0.00 3.36
423 424 2.501723 ACGCTCCAGTTGATAATGTCCT 59.498 45.455 0.00 0.00 0.00 3.85
424 425 2.866762 GACGCTCCAGTTGATAATGTCC 59.133 50.000 0.00 0.00 0.00 4.02
425 426 3.786635 AGACGCTCCAGTTGATAATGTC 58.213 45.455 0.00 0.00 0.00 3.06
426 427 3.449018 AGAGACGCTCCAGTTGATAATGT 59.551 43.478 3.66 0.00 0.00 2.71
427 428 4.052159 AGAGACGCTCCAGTTGATAATG 57.948 45.455 3.66 0.00 0.00 1.90
428 429 4.744795 AAGAGACGCTCCAGTTGATAAT 57.255 40.909 3.66 0.00 0.00 1.28
429 430 4.220821 AGAAAGAGACGCTCCAGTTGATAA 59.779 41.667 3.66 0.00 0.00 1.75
430 431 3.764434 AGAAAGAGACGCTCCAGTTGATA 59.236 43.478 3.66 0.00 0.00 2.15
431 432 2.564947 AGAAAGAGACGCTCCAGTTGAT 59.435 45.455 3.66 0.00 0.00 2.57
432 433 1.964223 AGAAAGAGACGCTCCAGTTGA 59.036 47.619 3.66 0.00 0.00 3.18
433 434 2.029470 AGAGAAAGAGACGCTCCAGTTG 60.029 50.000 3.66 0.00 0.00 3.16
434 435 2.230266 GAGAGAAAGAGACGCTCCAGTT 59.770 50.000 3.66 0.00 0.00 3.16
435 436 1.816224 GAGAGAAAGAGACGCTCCAGT 59.184 52.381 3.66 0.00 0.00 4.00
436 437 2.559998 GAGAGAAAGAGACGCTCCAG 57.440 55.000 3.66 0.00 0.00 3.86
439 440 2.230266 ACTTGGAGAGAAAGAGACGCTC 59.770 50.000 0.00 0.00 34.41 5.03
440 441 2.230266 GACTTGGAGAGAAAGAGACGCT 59.770 50.000 0.00 0.00 0.00 5.07
441 442 2.601804 GACTTGGAGAGAAAGAGACGC 58.398 52.381 0.00 0.00 0.00 5.19
442 443 2.857618 CGACTTGGAGAGAAAGAGACG 58.142 52.381 0.00 0.00 0.00 4.18
443 444 2.029828 TGCGACTTGGAGAGAAAGAGAC 60.030 50.000 0.00 0.00 0.00 3.36
444 445 2.239400 TGCGACTTGGAGAGAAAGAGA 58.761 47.619 0.00 0.00 0.00 3.10
445 446 2.732412 TGCGACTTGGAGAGAAAGAG 57.268 50.000 0.00 0.00 0.00 2.85
446 447 3.469008 TTTGCGACTTGGAGAGAAAGA 57.531 42.857 0.00 0.00 0.00 2.52
447 448 4.552166 TTTTTGCGACTTGGAGAGAAAG 57.448 40.909 0.00 0.00 0.00 2.62
877 879 4.483311 GTCGTCACTAAACCCTAGAGTTG 58.517 47.826 0.00 0.00 0.00 3.16
1254 1260 0.991920 TTACAAGGGCAGAGGAAGGG 59.008 55.000 0.00 0.00 0.00 3.95
1258 1264 0.255890 GGCATTACAAGGGCAGAGGA 59.744 55.000 0.00 0.00 35.18 3.71
1259 1265 0.753111 GGGCATTACAAGGGCAGAGG 60.753 60.000 2.60 0.00 36.95 3.69
1391 1397 1.415659 AGAGCAGAATCATTCCCGAGG 59.584 52.381 0.00 0.00 0.00 4.63
1410 1416 4.778213 TTCCCATTTCTCCAGTATCCAG 57.222 45.455 0.00 0.00 0.00 3.86
1437 1444 4.460034 TGCTAGAATTGCTCAAGAAATGCA 59.540 37.500 0.00 0.00 34.69 3.96
1444 1452 3.128242 CCTTGGTGCTAGAATTGCTCAAG 59.872 47.826 0.00 11.89 39.49 3.02
1508 1516 9.866798 CAGCAGAAGTCATATATATATGTGTGT 57.133 33.333 25.23 13.53 40.69 3.72
1513 1521 7.168804 CACCGCAGCAGAAGTCATATATATATG 59.831 40.741 21.99 21.99 41.10 1.78
1520 1528 1.945387 CACCGCAGCAGAAGTCATAT 58.055 50.000 0.00 0.00 0.00 1.78
1521 1529 0.740868 GCACCGCAGCAGAAGTCATA 60.741 55.000 0.00 0.00 0.00 2.15
1522 1530 2.037136 GCACCGCAGCAGAAGTCAT 61.037 57.895 0.00 0.00 0.00 3.06
1523 1531 2.666190 GCACCGCAGCAGAAGTCA 60.666 61.111 0.00 0.00 0.00 3.41
1529 1537 3.857854 GACATCGCACCGCAGCAG 61.858 66.667 0.00 0.00 0.00 4.24
1629 1637 1.978455 AACCGGGTTCAGCACTGTCA 61.978 55.000 6.59 0.00 0.00 3.58
1679 1687 9.799223 ACCCATATAGACCAAACCAGTATATAT 57.201 33.333 0.00 0.00 35.84 0.86
1681 1689 9.624037 TTACCCATATAGACCAAACCAGTATAT 57.376 33.333 0.00 0.00 0.00 0.86
1683 1691 7.941053 TTACCCATATAGACCAAACCAGTAT 57.059 36.000 0.00 0.00 0.00 2.12
1685 1693 6.645884 TTTACCCATATAGACCAAACCAGT 57.354 37.500 0.00 0.00 0.00 4.00
1686 1694 7.777910 TGATTTTACCCATATAGACCAAACCAG 59.222 37.037 0.00 0.00 0.00 4.00
1687 1695 7.644062 TGATTTTACCCATATAGACCAAACCA 58.356 34.615 0.00 0.00 0.00 3.67
1688 1696 8.706322 ATGATTTTACCCATATAGACCAAACC 57.294 34.615 0.00 0.00 0.00 3.27
1691 1699 9.170890 AGAGATGATTTTACCCATATAGACCAA 57.829 33.333 0.00 0.00 0.00 3.67
1872 1885 9.807921 ATAGTTACAAGATTTCCTTTCCAGAAA 57.192 29.630 0.00 0.00 37.61 2.52
1966 1979 9.317936 TGCATGTGAATTTTATACAAAAACACA 57.682 25.926 17.99 17.99 46.28 3.72
2031 2045 3.286751 GCCACTGCACGCCTCAAA 61.287 61.111 0.00 0.00 37.47 2.69
2038 2052 0.671472 TCATCTGAAGCCACTGCACG 60.671 55.000 0.00 0.00 41.13 5.34
2281 2295 9.294030 GAGAATCATCAACCATGTTATTGAAAC 57.706 33.333 7.99 0.00 38.29 2.78
2330 2344 3.569194 TGGCAAGAGGTGACAAAAGTA 57.431 42.857 0.00 0.00 44.65 2.24
2410 2425 3.559069 CTGGCAATTATGTGTCCCATCT 58.441 45.455 0.00 0.00 34.86 2.90
2461 2477 1.002366 CAGGCTGTGTATGTTCGCTC 58.998 55.000 6.28 0.00 0.00 5.03
2478 2494 0.761802 GGAAGGGGGAGAGTATGCAG 59.238 60.000 0.00 0.00 0.00 4.41
2485 2501 2.040359 GAGGGGGAAGGGGGAGAG 60.040 72.222 0.00 0.00 0.00 3.20
2494 2510 2.074922 AAAGGAAGGATGAGGGGGAA 57.925 50.000 0.00 0.00 0.00 3.97
2534 2552 3.510388 GCTCAAAGCAAATAACTCCCC 57.490 47.619 0.00 0.00 41.89 4.81
2577 2595 1.202855 AGCTGAACACTGTGAGGCAAT 60.203 47.619 15.86 0.00 0.00 3.56
2599 2617 6.529463 AAAAGAAAAATTGGTTCAGATGCG 57.471 33.333 5.26 0.00 0.00 4.73
2741 2764 5.999205 ATCAAATAAGTGCCAAATGTCCA 57.001 34.783 0.00 0.00 0.00 4.02
2808 2831 7.280356 GCCTACTCCCTGTATTTCAAAGAATA 58.720 38.462 0.00 0.00 0.00 1.75
2827 2850 2.489528 TTGCTATACTGGGGCCTACT 57.510 50.000 0.84 0.00 0.00 2.57
3020 3043 4.290711 TGATGATGCAACTCCTGAAAGA 57.709 40.909 0.00 0.00 34.07 2.52
3108 3131 6.120905 CCAATGAGTTTCTGAGGATCTGATT 58.879 40.000 0.00 0.00 42.79 2.57
3116 3139 1.467920 GGCCCAATGAGTTTCTGAGG 58.532 55.000 0.00 0.00 0.00 3.86
3133 3156 4.805219 AGTATTTTCCAACATGAAACGGC 58.195 39.130 0.00 0.00 34.13 5.68
3211 3238 6.878923 AGATCTACCATTGACGATCTAGAGAG 59.121 42.308 0.00 0.00 40.42 3.20
3401 3431 4.163268 TCCCTTTTGGCTAACAAGCTTTTT 59.837 37.500 0.00 0.00 40.82 1.94
3538 3568 9.607988 TTGTTAACAAGAAAACTATCTGTCTCA 57.392 29.630 17.01 0.00 0.00 3.27
3681 3726 9.167311 CAAAGAATAAGCTAGTGTTTCTATGGT 57.833 33.333 0.00 0.00 0.00 3.55
3974 4019 3.057456 ACATGGACTTCAGTGTCTCGTAC 60.057 47.826 0.00 0.00 37.16 3.67
4003 4048 4.470664 AGATCTATTCATCTGATGCCCCTC 59.529 45.833 12.78 5.08 31.48 4.30
4081 4126 0.269173 CCCCTCCCTCCCTAATCACT 59.731 60.000 0.00 0.00 0.00 3.41
4187 4232 8.739972 ACAAGAAAACCTATAGCCACATAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
4188 4233 8.644374 ACAAGAAAACCTATAGCCACATAAAA 57.356 30.769 0.00 0.00 0.00 1.52
4194 4239 5.064834 GCACTACAAGAAAACCTATAGCCAC 59.935 44.000 0.00 0.00 0.00 5.01
4317 4362 0.543277 AATCGCCAGGCTGAAGATGA 59.457 50.000 17.94 6.33 0.00 2.92
4445 4490 6.030734 AGATCCAGGATCCATATCAAGATGT 58.969 40.000 24.02 0.00 39.66 3.06
4507 4552 6.264067 ACATAAATCAAGATAGAGCTTTGGCC 59.736 38.462 0.00 0.00 39.73 5.36
4523 4568 8.043113 ACAGAGAAGATAGTGCAACATAAATCA 58.957 33.333 0.00 0.00 41.43 2.57
4628 4677 6.418956 CAGTAATTATGCAACATCGGTACAC 58.581 40.000 0.00 0.00 0.00 2.90
4644 4693 9.226606 CTTTTACAATGTCAGACCCAGTAATTA 57.773 33.333 0.00 0.00 0.00 1.40
4645 4694 7.724061 ACTTTTACAATGTCAGACCCAGTAATT 59.276 33.333 0.00 0.00 0.00 1.40
4678 4727 1.545706 AAGGACGAGGCAGGAGGAAC 61.546 60.000 0.00 0.00 0.00 3.62
4697 4746 7.734942 TGATAGAAGTACATAATCACCATGCA 58.265 34.615 0.00 0.00 0.00 3.96
4752 4801 7.409697 CAATCAATCGGTCCAGTAATAAACAG 58.590 38.462 0.00 0.00 0.00 3.16
4760 4809 3.558931 ATGCAATCAATCGGTCCAGTA 57.441 42.857 0.00 0.00 0.00 2.74
4768 4817 9.679596 GATAAGAAACAAAAATGCAATCAATCG 57.320 29.630 0.00 0.00 0.00 3.34
4775 4824 6.286758 TGCAGGATAAGAAACAAAAATGCAA 58.713 32.000 0.00 0.00 37.04 4.08
4805 4854 3.754323 TGTTTTTATGTAGAAGGCCACCG 59.246 43.478 5.01 0.00 0.00 4.94
4815 4864 8.722342 AGTTGTTTGCGTATGTTTTTATGTAG 57.278 30.769 0.00 0.00 0.00 2.74
4831 4880 3.066621 TGTCTTCACCATGAGTTGTTTGC 59.933 43.478 0.00 0.00 0.00 3.68
4891 4940 0.179468 GGGCGGCCTCTACAACATAA 59.821 55.000 22.87 0.00 0.00 1.90
4924 4973 3.930336 TCAGTTCTTGCAGTCCATACAG 58.070 45.455 0.00 0.00 0.00 2.74
4925 4974 4.507710 GATCAGTTCTTGCAGTCCATACA 58.492 43.478 0.00 0.00 0.00 2.29
4934 4983 1.202794 TGCTGTGGATCAGTTCTTGCA 60.203 47.619 0.00 0.00 45.23 4.08
4977 5026 6.513393 CGAAGCATCAAACAGAGTTTACCTTT 60.513 38.462 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.