Multiple sequence alignment - TraesCS4D01G211500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G211500 chr4D 100.000 4487 0 0 1 4487 363928997 363924511 0.000000e+00 8287.0
1 TraesCS4D01G211500 chr4D 81.818 132 19 5 187 315 69480717 69480588 6.140000e-19 106.0
2 TraesCS4D01G211500 chr4D 87.097 93 12 0 2243 2335 81972588 81972680 6.140000e-19 106.0
3 TraesCS4D01G211500 chr4D 81.818 121 16 5 415 532 113170493 113170376 3.690000e-16 97.1
4 TraesCS4D01G211500 chr4B 98.446 2124 26 3 2370 4487 449306491 449304369 0.000000e+00 3733.0
5 TraesCS4D01G211500 chr4B 94.887 1545 46 14 727 2257 449308014 449306489 0.000000e+00 2385.0
6 TraesCS4D01G211500 chr4B 95.122 123 6 0 2255 2377 613958804 613958682 1.270000e-45 195.0
7 TraesCS4D01G211500 chr4B 81.944 144 12 9 2244 2376 78920494 78920634 4.750000e-20 110.0
8 TraesCS4D01G211500 chr4B 84.685 111 15 2 203 312 522534351 522534460 4.750000e-20 110.0
9 TraesCS4D01G211500 chr4B 82.270 141 10 8 2244 2372 393371999 393371862 1.710000e-19 108.0
10 TraesCS4D01G211500 chr4B 97.917 48 0 1 653 699 449308062 449308015 1.030000e-11 82.4
11 TraesCS4D01G211500 chr4A 97.273 2127 46 5 2370 4487 101404014 101406137 0.000000e+00 3596.0
12 TraesCS4D01G211500 chr4A 94.323 1603 46 11 668 2257 101402446 101404016 0.000000e+00 2414.0
13 TraesCS4D01G211500 chr4A 85.841 113 15 1 203 315 683889116 683889227 7.880000e-23 119.0
14 TraesCS4D01G211500 chr2B 96.581 117 4 0 2259 2375 587232328 587232212 1.270000e-45 195.0
15 TraesCS4D01G211500 chr2B 84.483 116 17 1 200 315 198446783 198446897 3.670000e-21 113.0
16 TraesCS4D01G211500 chr2A 94.444 126 7 0 2248 2373 175483480 175483355 1.270000e-45 195.0
17 TraesCS4D01G211500 chr2A 79.389 131 24 3 411 539 751178571 751178442 6.180000e-14 89.8
18 TraesCS4D01G211500 chr2A 85.333 75 6 3 537 606 726598405 726598479 6.230000e-09 73.1
19 TraesCS4D01G211500 chr2A 88.136 59 7 0 574 632 661863377 661863435 2.240000e-08 71.3
20 TraesCS4D01G211500 chr2A 80.682 88 12 1 568 650 773858131 773858218 3.750000e-06 63.9
21 TraesCS4D01G211500 chr7B 95.798 119 5 0 2255 2373 290001037 290000919 4.580000e-45 193.0
22 TraesCS4D01G211500 chr7B 83.803 142 19 4 2239 2378 92290902 92291041 1.010000e-26 132.0
23 TraesCS4D01G211500 chr7B 88.288 111 11 2 203 312 377029426 377029535 1.010000e-26 132.0
24 TraesCS4D01G211500 chr3D 95.798 119 5 0 2255 2373 337959626 337959508 4.580000e-45 193.0
25 TraesCS4D01G211500 chr3D 84.615 91 9 1 564 649 470498783 470498873 8.000000e-13 86.1
26 TraesCS4D01G211500 chr1A 93.182 132 8 1 2256 2386 23098991 23099122 4.580000e-45 193.0
27 TraesCS4D01G211500 chr1A 88.722 133 15 0 2244 2376 357787022 357787154 3.590000e-36 163.0
28 TraesCS4D01G211500 chr3A 95.763 118 5 0 2255 2372 455781653 455781536 1.650000e-44 191.0
29 TraesCS4D01G211500 chr1B 95.041 121 4 2 2259 2378 59050020 59049901 5.930000e-44 189.0
30 TraesCS4D01G211500 chr1B 86.957 115 14 1 198 312 521219372 521219485 1.310000e-25 128.0
31 TraesCS4D01G211500 chr1B 89.216 102 9 2 2241 2340 6752675 6752574 4.710000e-25 126.0
32 TraesCS4D01G211500 chr1B 85.507 69 10 0 564 632 470060140 470060072 6.230000e-09 73.1
33 TraesCS4D01G211500 chr1B 92.500 40 3 0 567 606 372095136 372095175 1.740000e-04 58.4
34 TraesCS4D01G211500 chr3B 92.969 128 8 1 2255 2381 483569772 483569899 7.660000e-43 185.0
35 TraesCS4D01G211500 chr3B 85.714 133 18 1 2243 2374 823224380 823224512 6.050000e-29 139.0
36 TraesCS4D01G211500 chr5B 90.678 118 11 0 2255 2372 70795772 70795655 1.670000e-34 158.0
37 TraesCS4D01G211500 chr1D 87.719 114 12 2 199 312 387944778 387944889 1.010000e-26 132.0
38 TraesCS4D01G211500 chr1D 82.203 118 21 0 415 532 393035280 393035163 7.940000e-18 102.0
39 TraesCS4D01G211500 chr6B 84.173 139 16 5 2240 2374 571731963 571732099 3.640000e-26 130.0
40 TraesCS4D01G211500 chr6B 82.258 124 21 1 1096 1219 708625559 708625437 6.140000e-19 106.0
41 TraesCS4D01G211500 chr6B 86.813 91 12 0 531 621 623079575 623079665 7.940000e-18 102.0
42 TraesCS4D01G211500 chr6B 96.875 32 1 0 725 756 633728035 633728066 2.000000e-03 54.7
43 TraesCS4D01G211500 chr5A 86.087 115 13 3 200 312 601173709 601173822 2.190000e-23 121.0
44 TraesCS4D01G211500 chr5A 84.348 115 15 2 203 315 78435883 78435770 4.750000e-20 110.0
45 TraesCS4D01G211500 chr7D 83.051 118 20 0 415 532 161430780 161430663 1.710000e-19 108.0
46 TraesCS4D01G211500 chr5D 83.051 118 20 0 415 532 477960815 477960932 1.710000e-19 108.0
47 TraesCS4D01G211500 chr5D 81.356 118 22 0 415 532 41465976 41465859 3.690000e-16 97.1
48 TraesCS4D01G211500 chr6A 82.258 124 21 1 1096 1219 611293842 611293720 6.140000e-19 106.0
49 TraesCS4D01G211500 chr2D 86.316 95 13 0 415 509 491025217 491025311 2.210000e-18 104.0
50 TraesCS4D01G211500 chr2D 80.645 124 22 2 405 527 36472452 36472330 1.330000e-15 95.3
51 TraesCS4D01G211500 chr7A 84.112 107 15 2 410 515 231588099 231587994 7.940000e-18 102.0
52 TraesCS4D01G211500 chr7A 97.297 37 1 0 566 602 564607414 564607450 3.750000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G211500 chr4D 363924511 363928997 4486 True 8287.0 8287 100.000000 1 4487 1 chr4D.!!$R3 4486
1 TraesCS4D01G211500 chr4B 449304369 449308062 3693 True 2066.8 3733 97.083333 653 4487 3 chr4B.!!$R3 3834
2 TraesCS4D01G211500 chr4A 101402446 101406137 3691 False 3005.0 3596 95.798000 668 4487 2 chr4A.!!$F2 3819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 551 0.034670 GCTCTGGCTTGGTCCTGATT 60.035 55.0 0.00 0.0 34.28 2.57 F
2277 2305 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2286 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
4096 4128 1.094785 TCTGCCTTCGCTAAATTGGC 58.905 50.0 0.00 0.00 43.49 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.505337 CGGACGACGCGGAATGAA 60.505 61.111 12.47 0.00 34.82 2.57
26 27 2.785105 CGGACGACGCGGAATGAAC 61.785 63.158 12.47 0.00 34.82 3.18
27 28 1.445582 GGACGACGCGGAATGAACT 60.446 57.895 12.47 0.00 0.00 3.01
28 29 1.411493 GGACGACGCGGAATGAACTC 61.411 60.000 12.47 0.00 0.00 3.01
29 30 0.456312 GACGACGCGGAATGAACTCT 60.456 55.000 12.47 0.00 0.00 3.24
30 31 0.456312 ACGACGCGGAATGAACTCTC 60.456 55.000 12.47 0.00 0.00 3.20
31 32 1.464429 CGACGCGGAATGAACTCTCG 61.464 60.000 12.47 2.03 0.00 4.04
32 33 1.743855 GACGCGGAATGAACTCTCGC 61.744 60.000 12.47 0.00 42.51 5.03
33 34 2.998667 GCGGAATGAACTCTCGCG 59.001 61.111 0.00 0.00 37.12 5.87
34 35 2.998667 CGGAATGAACTCTCGCGC 59.001 61.111 0.00 0.00 0.00 6.86
35 36 2.849966 CGGAATGAACTCTCGCGCG 61.850 63.158 26.76 26.76 0.00 6.86
36 37 2.517450 GGAATGAACTCTCGCGCGG 61.517 63.158 31.69 20.60 0.00 6.46
37 38 3.144120 GAATGAACTCTCGCGCGGC 62.144 63.158 31.69 12.76 0.00 6.53
58 59 4.369837 GCCCCCAAAAGGCGGGTA 62.370 66.667 9.03 0.00 42.77 3.69
59 60 2.687266 CCCCCAAAAGGCGGGTAT 59.313 61.111 0.00 0.00 42.77 2.73
60 61 1.001120 CCCCCAAAAGGCGGGTATT 59.999 57.895 0.00 0.00 42.77 1.89
61 62 1.040893 CCCCCAAAAGGCGGGTATTC 61.041 60.000 0.00 0.00 42.77 1.75
62 63 1.040893 CCCCAAAAGGCGGGTATTCC 61.041 60.000 0.00 0.00 42.77 3.01
63 64 0.323908 CCCAAAAGGCGGGTATTCCA 60.324 55.000 0.00 0.00 39.05 3.53
64 65 1.102978 CCAAAAGGCGGGTATTCCAG 58.897 55.000 0.00 0.00 34.36 3.86
76 77 6.254281 CGGGTATTCCAGCATTTTTATAGG 57.746 41.667 0.00 0.00 34.36 2.57
77 78 6.001460 CGGGTATTCCAGCATTTTTATAGGA 58.999 40.000 0.00 0.00 34.36 2.94
78 79 6.149474 CGGGTATTCCAGCATTTTTATAGGAG 59.851 42.308 0.00 0.00 34.36 3.69
79 80 7.004691 GGGTATTCCAGCATTTTTATAGGAGT 58.995 38.462 0.00 0.00 35.00 3.85
80 81 8.161425 GGGTATTCCAGCATTTTTATAGGAGTA 58.839 37.037 0.00 0.00 35.00 2.59
81 82 9.569122 GGTATTCCAGCATTTTTATAGGAGTAA 57.431 33.333 0.00 0.00 0.00 2.24
84 85 9.866655 ATTCCAGCATTTTTATAGGAGTAATGA 57.133 29.630 0.00 0.00 0.00 2.57
85 86 8.908786 TCCAGCATTTTTATAGGAGTAATGAG 57.091 34.615 0.00 0.00 0.00 2.90
86 87 7.445402 TCCAGCATTTTTATAGGAGTAATGAGC 59.555 37.037 0.00 0.00 0.00 4.26
87 88 7.293745 CAGCATTTTTATAGGAGTAATGAGCG 58.706 38.462 0.00 0.00 0.00 5.03
88 89 6.992715 AGCATTTTTATAGGAGTAATGAGCGT 59.007 34.615 0.00 0.00 0.00 5.07
89 90 7.041780 AGCATTTTTATAGGAGTAATGAGCGTG 60.042 37.037 0.00 0.00 0.00 5.34
90 91 7.254795 GCATTTTTATAGGAGTAATGAGCGTGT 60.255 37.037 0.00 0.00 0.00 4.49
91 92 9.256477 CATTTTTATAGGAGTAATGAGCGTGTA 57.744 33.333 0.00 0.00 0.00 2.90
92 93 8.867112 TTTTTATAGGAGTAATGAGCGTGTAG 57.133 34.615 0.00 0.00 0.00 2.74
93 94 7.578310 TTTATAGGAGTAATGAGCGTGTAGT 57.422 36.000 0.00 0.00 0.00 2.73
94 95 7.578310 TTATAGGAGTAATGAGCGTGTAGTT 57.422 36.000 0.00 0.00 0.00 2.24
95 96 4.111375 AGGAGTAATGAGCGTGTAGTTG 57.889 45.455 0.00 0.00 0.00 3.16
96 97 3.510360 AGGAGTAATGAGCGTGTAGTTGT 59.490 43.478 0.00 0.00 0.00 3.32
97 98 3.612860 GGAGTAATGAGCGTGTAGTTGTG 59.387 47.826 0.00 0.00 0.00 3.33
98 99 4.482386 GAGTAATGAGCGTGTAGTTGTGA 58.518 43.478 0.00 0.00 0.00 3.58
99 100 4.878439 AGTAATGAGCGTGTAGTTGTGAA 58.122 39.130 0.00 0.00 0.00 3.18
100 101 5.294356 AGTAATGAGCGTGTAGTTGTGAAA 58.706 37.500 0.00 0.00 0.00 2.69
101 102 5.756347 AGTAATGAGCGTGTAGTTGTGAAAA 59.244 36.000 0.00 0.00 0.00 2.29
102 103 5.493133 AATGAGCGTGTAGTTGTGAAAAA 57.507 34.783 0.00 0.00 0.00 1.94
103 104 5.689383 ATGAGCGTGTAGTTGTGAAAAAT 57.311 34.783 0.00 0.00 0.00 1.82
104 105 6.795098 ATGAGCGTGTAGTTGTGAAAAATA 57.205 33.333 0.00 0.00 0.00 1.40
105 106 6.606234 TGAGCGTGTAGTTGTGAAAAATAA 57.394 33.333 0.00 0.00 0.00 1.40
106 107 7.197071 TGAGCGTGTAGTTGTGAAAAATAAT 57.803 32.000 0.00 0.00 0.00 1.28
107 108 8.312896 TGAGCGTGTAGTTGTGAAAAATAATA 57.687 30.769 0.00 0.00 0.00 0.98
108 109 8.941977 TGAGCGTGTAGTTGTGAAAAATAATAT 58.058 29.630 0.00 0.00 0.00 1.28
109 110 9.769093 GAGCGTGTAGTTGTGAAAAATAATATT 57.231 29.630 0.00 0.00 0.00 1.28
110 111 9.554724 AGCGTGTAGTTGTGAAAAATAATATTG 57.445 29.630 0.00 0.00 0.00 1.90
111 112 9.549509 GCGTGTAGTTGTGAAAAATAATATTGA 57.450 29.630 0.00 0.00 0.00 2.57
137 138 8.994429 ATCTCCTATATCTTTGTAAATGCTCG 57.006 34.615 0.00 0.00 0.00 5.03
138 139 7.952671 TCTCCTATATCTTTGTAAATGCTCGT 58.047 34.615 0.00 0.00 0.00 4.18
139 140 9.074576 TCTCCTATATCTTTGTAAATGCTCGTA 57.925 33.333 0.00 0.00 0.00 3.43
140 141 9.862371 CTCCTATATCTTTGTAAATGCTCGTAT 57.138 33.333 0.00 0.00 0.00 3.06
145 146 9.864034 ATATCTTTGTAAATGCTCGTATTTTCG 57.136 29.630 0.00 0.00 32.79 3.46
146 147 7.354025 TCTTTGTAAATGCTCGTATTTTCGA 57.646 32.000 0.00 0.00 38.19 3.71
158 159 6.864560 TCGTATTTTCGAGTGATGTACTTG 57.135 37.500 0.00 0.00 40.53 3.16
159 160 6.384224 TCGTATTTTCGAGTGATGTACTTGT 58.616 36.000 0.00 0.00 40.53 3.16
160 161 6.864685 TCGTATTTTCGAGTGATGTACTTGTT 59.135 34.615 0.00 0.00 40.53 2.83
161 162 7.383029 TCGTATTTTCGAGTGATGTACTTGTTT 59.617 33.333 0.00 0.00 40.53 2.83
162 163 8.007716 CGTATTTTCGAGTGATGTACTTGTTTT 58.992 33.333 0.00 0.00 40.53 2.43
163 164 9.314501 GTATTTTCGAGTGATGTACTTGTTTTC 57.685 33.333 0.00 0.00 40.53 2.29
164 165 7.548196 TTTTCGAGTGATGTACTTGTTTTCT 57.452 32.000 0.00 0.00 40.53 2.52
165 166 7.548196 TTTCGAGTGATGTACTTGTTTTCTT 57.452 32.000 0.00 0.00 40.53 2.52
166 167 6.525121 TCGAGTGATGTACTTGTTTTCTTG 57.475 37.500 0.00 0.00 40.53 3.02
167 168 5.465390 TCGAGTGATGTACTTGTTTTCTTGG 59.535 40.000 0.00 0.00 40.53 3.61
168 169 5.465390 CGAGTGATGTACTTGTTTTCTTGGA 59.535 40.000 0.00 0.00 40.53 3.53
169 170 6.147821 CGAGTGATGTACTTGTTTTCTTGGAT 59.852 38.462 0.00 0.00 40.53 3.41
170 171 7.206981 AGTGATGTACTTGTTTTCTTGGATG 57.793 36.000 0.00 0.00 35.67 3.51
171 172 6.207417 AGTGATGTACTTGTTTTCTTGGATGG 59.793 38.462 0.00 0.00 35.67 3.51
172 173 5.476599 TGATGTACTTGTTTTCTTGGATGGG 59.523 40.000 0.00 0.00 0.00 4.00
173 174 4.148838 TGTACTTGTTTTCTTGGATGGGG 58.851 43.478 0.00 0.00 0.00 4.96
174 175 2.608623 ACTTGTTTTCTTGGATGGGGG 58.391 47.619 0.00 0.00 0.00 5.40
175 176 2.178984 ACTTGTTTTCTTGGATGGGGGA 59.821 45.455 0.00 0.00 0.00 4.81
176 177 2.603075 TGTTTTCTTGGATGGGGGAG 57.397 50.000 0.00 0.00 0.00 4.30
177 178 1.186200 GTTTTCTTGGATGGGGGAGC 58.814 55.000 0.00 0.00 0.00 4.70
178 179 1.084018 TTTTCTTGGATGGGGGAGCT 58.916 50.000 0.00 0.00 0.00 4.09
179 180 0.332632 TTTCTTGGATGGGGGAGCTG 59.667 55.000 0.00 0.00 0.00 4.24
180 181 1.574526 TTCTTGGATGGGGGAGCTGG 61.575 60.000 0.00 0.00 0.00 4.85
181 182 3.023116 TTGGATGGGGGAGCTGGG 61.023 66.667 0.00 0.00 0.00 4.45
182 183 3.594747 TTGGATGGGGGAGCTGGGA 62.595 63.158 0.00 0.00 0.00 4.37
183 184 3.174265 GGATGGGGGAGCTGGGAG 61.174 72.222 0.00 0.00 0.00 4.30
184 185 2.040464 GATGGGGGAGCTGGGAGA 60.040 66.667 0.00 0.00 0.00 3.71
185 186 2.040043 ATGGGGGAGCTGGGAGAG 60.040 66.667 0.00 0.00 0.00 3.20
186 187 2.611964 GATGGGGGAGCTGGGAGAGA 62.612 65.000 0.00 0.00 0.00 3.10
187 188 1.983035 ATGGGGGAGCTGGGAGAGAT 61.983 60.000 0.00 0.00 0.00 2.75
188 189 1.304179 TGGGGGAGCTGGGAGAGATA 61.304 60.000 0.00 0.00 0.00 1.98
189 190 0.118144 GGGGGAGCTGGGAGAGATAT 59.882 60.000 0.00 0.00 0.00 1.63
190 191 1.485978 GGGGGAGCTGGGAGAGATATT 60.486 57.143 0.00 0.00 0.00 1.28
191 192 2.343625 GGGGAGCTGGGAGAGATATTT 58.656 52.381 0.00 0.00 0.00 1.40
192 193 2.713708 GGGGAGCTGGGAGAGATATTTT 59.286 50.000 0.00 0.00 0.00 1.82
193 194 3.139211 GGGGAGCTGGGAGAGATATTTTT 59.861 47.826 0.00 0.00 0.00 1.94
251 252 9.588096 AGTCTTTTTACAGATTTCAATAAGGGT 57.412 29.630 0.00 0.00 0.00 4.34
252 253 9.841880 GTCTTTTTACAGATTTCAATAAGGGTC 57.158 33.333 0.00 0.00 0.00 4.46
253 254 9.807921 TCTTTTTACAGATTTCAATAAGGGTCT 57.192 29.630 0.00 0.00 0.00 3.85
257 258 9.444600 TTTACAGATTTCAATAAGGGTCTACAC 57.555 33.333 0.00 0.00 0.00 2.90
258 259 7.016153 ACAGATTTCAATAAGGGTCTACACA 57.984 36.000 0.00 0.00 0.00 3.72
259 260 6.879458 ACAGATTTCAATAAGGGTCTACACAC 59.121 38.462 0.00 0.00 0.00 3.82
260 261 6.878923 CAGATTTCAATAAGGGTCTACACACA 59.121 38.462 0.00 0.00 0.00 3.72
261 262 7.065085 CAGATTTCAATAAGGGTCTACACACAG 59.935 40.741 0.00 0.00 0.00 3.66
262 263 6.428083 TTTCAATAAGGGTCTACACACAGA 57.572 37.500 0.00 0.00 0.00 3.41
263 264 6.620877 TTCAATAAGGGTCTACACACAGAT 57.379 37.500 0.00 0.00 0.00 2.90
264 265 5.977635 TCAATAAGGGTCTACACACAGATG 58.022 41.667 0.00 0.00 0.00 2.90
265 266 2.770164 AAGGGTCTACACACAGATGC 57.230 50.000 0.00 0.00 0.00 3.91
266 267 1.644509 AGGGTCTACACACAGATGCA 58.355 50.000 0.00 0.00 0.00 3.96
267 268 2.191400 AGGGTCTACACACAGATGCAT 58.809 47.619 0.00 0.00 0.00 3.96
268 269 3.374764 AGGGTCTACACACAGATGCATA 58.625 45.455 0.00 0.00 0.00 3.14
269 270 3.969976 AGGGTCTACACACAGATGCATAT 59.030 43.478 0.00 0.00 0.00 1.78
270 271 5.147767 AGGGTCTACACACAGATGCATATA 58.852 41.667 0.00 0.00 0.00 0.86
271 272 5.244851 AGGGTCTACACACAGATGCATATAG 59.755 44.000 0.00 0.00 0.00 1.31
272 273 5.243954 GGGTCTACACACAGATGCATATAGA 59.756 44.000 0.00 0.00 0.00 1.98
273 274 6.153067 GGTCTACACACAGATGCATATAGAC 58.847 44.000 0.00 5.13 37.59 2.59
274 275 6.239036 GGTCTACACACAGATGCATATAGACA 60.239 42.308 17.09 0.00 39.24 3.41
275 276 7.374272 GTCTACACACAGATGCATATAGACAT 58.626 38.462 12.56 0.00 38.01 3.06
276 277 8.515414 GTCTACACACAGATGCATATAGACATA 58.485 37.037 12.56 0.00 38.01 2.29
277 278 9.077885 TCTACACACAGATGCATATAGACATAA 57.922 33.333 0.00 0.00 0.00 1.90
278 279 9.866798 CTACACACAGATGCATATAGACATAAT 57.133 33.333 0.00 0.00 0.00 1.28
280 281 9.565090 ACACACAGATGCATATAGACATAATTT 57.435 29.630 0.00 0.00 0.00 1.82
307 308 9.860898 AAAATGTAGATTCACTTATTTTGCTCC 57.139 29.630 0.00 0.00 35.24 4.70
308 309 6.662414 TGTAGATTCACTTATTTTGCTCCG 57.338 37.500 0.00 0.00 0.00 4.63
309 310 6.170506 TGTAGATTCACTTATTTTGCTCCGT 58.829 36.000 0.00 0.00 0.00 4.69
310 311 7.324935 TGTAGATTCACTTATTTTGCTCCGTA 58.675 34.615 0.00 0.00 0.00 4.02
311 312 7.985184 TGTAGATTCACTTATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
312 313 9.472361 GTAGATTCACTTATTTTGCTCCGTATA 57.528 33.333 0.00 0.00 0.00 1.47
317 318 8.683550 TCACTTATTTTGCTCCGTATATATCG 57.316 34.615 0.00 0.00 0.00 2.92
318 319 8.517056 TCACTTATTTTGCTCCGTATATATCGA 58.483 33.333 0.00 0.00 0.00 3.59
319 320 9.135843 CACTTATTTTGCTCCGTATATATCGAA 57.864 33.333 0.00 0.00 0.00 3.71
320 321 9.355215 ACTTATTTTGCTCCGTATATATCGAAG 57.645 33.333 0.00 0.00 0.00 3.79
321 322 8.697846 TTATTTTGCTCCGTATATATCGAAGG 57.302 34.615 0.00 0.00 0.00 3.46
322 323 4.713824 TTGCTCCGTATATATCGAAGGG 57.286 45.455 0.00 0.00 0.00 3.95
323 324 3.959293 TGCTCCGTATATATCGAAGGGA 58.041 45.455 0.00 0.00 0.00 4.20
324 325 3.945921 TGCTCCGTATATATCGAAGGGAG 59.054 47.826 15.34 15.34 44.42 4.30
325 326 3.946558 GCTCCGTATATATCGAAGGGAGT 59.053 47.826 18.93 0.00 43.81 3.85
326 327 5.121811 GCTCCGTATATATCGAAGGGAGTA 58.878 45.833 18.93 0.00 43.81 2.59
327 328 5.007528 GCTCCGTATATATCGAAGGGAGTAC 59.992 48.000 18.93 5.21 43.81 2.73
328 329 6.053632 TCCGTATATATCGAAGGGAGTACA 57.946 41.667 0.00 0.00 0.00 2.90
329 330 6.475504 TCCGTATATATCGAAGGGAGTACAA 58.524 40.000 0.00 0.00 0.00 2.41
330 331 6.942005 TCCGTATATATCGAAGGGAGTACAAA 59.058 38.462 0.00 0.00 0.00 2.83
331 332 7.025963 CCGTATATATCGAAGGGAGTACAAAC 58.974 42.308 0.00 0.00 0.00 2.93
332 333 7.308770 CCGTATATATCGAAGGGAGTACAAACA 60.309 40.741 0.00 0.00 0.00 2.83
333 334 8.077991 CGTATATATCGAAGGGAGTACAAACAA 58.922 37.037 0.00 0.00 0.00 2.83
334 335 9.754382 GTATATATCGAAGGGAGTACAAACAAA 57.246 33.333 0.00 0.00 0.00 2.83
336 337 5.941948 ATCGAAGGGAGTACAAACAAAAG 57.058 39.130 0.00 0.00 0.00 2.27
337 338 4.131596 TCGAAGGGAGTACAAACAAAAGG 58.868 43.478 0.00 0.00 0.00 3.11
338 339 3.252458 CGAAGGGAGTACAAACAAAAGGG 59.748 47.826 0.00 0.00 0.00 3.95
339 340 3.238788 AGGGAGTACAAACAAAAGGGG 57.761 47.619 0.00 0.00 0.00 4.79
340 341 2.516702 AGGGAGTACAAACAAAAGGGGT 59.483 45.455 0.00 0.00 0.00 4.95
341 342 3.052414 AGGGAGTACAAACAAAAGGGGTT 60.052 43.478 0.00 0.00 0.00 4.11
342 343 3.069016 GGGAGTACAAACAAAAGGGGTTG 59.931 47.826 0.00 0.00 34.52 3.77
343 344 3.069016 GGAGTACAAACAAAAGGGGTTGG 59.931 47.826 0.00 0.00 32.50 3.77
344 345 3.702548 GAGTACAAACAAAAGGGGTTGGT 59.297 43.478 0.00 0.00 36.43 3.67
345 346 4.098155 AGTACAAACAAAAGGGGTTGGTT 58.902 39.130 0.00 0.00 38.99 3.67
347 348 3.342377 CAAACAAAAGGGGTTGGTTGT 57.658 42.857 7.39 0.00 46.54 3.32
348 349 3.006247 CAAACAAAAGGGGTTGGTTGTG 58.994 45.455 7.39 0.00 46.54 3.33
349 350 2.239681 ACAAAAGGGGTTGGTTGTGA 57.760 45.000 0.00 0.00 33.09 3.58
350 351 1.828595 ACAAAAGGGGTTGGTTGTGAC 59.171 47.619 0.00 0.00 33.09 3.67
351 352 2.107366 CAAAAGGGGTTGGTTGTGACT 58.893 47.619 0.00 0.00 0.00 3.41
352 353 2.499693 CAAAAGGGGTTGGTTGTGACTT 59.500 45.455 0.00 0.00 0.00 3.01
353 354 1.775385 AAGGGGTTGGTTGTGACTTG 58.225 50.000 0.00 0.00 0.00 3.16
354 355 0.629058 AGGGGTTGGTTGTGACTTGT 59.371 50.000 0.00 0.00 0.00 3.16
355 356 0.744281 GGGGTTGGTTGTGACTTGTG 59.256 55.000 0.00 0.00 0.00 3.33
356 357 1.683629 GGGGTTGGTTGTGACTTGTGA 60.684 52.381 0.00 0.00 0.00 3.58
357 358 1.676006 GGGTTGGTTGTGACTTGTGAG 59.324 52.381 0.00 0.00 0.00 3.51
358 359 2.365582 GGTTGGTTGTGACTTGTGAGT 58.634 47.619 0.00 0.00 39.32 3.41
367 368 2.969628 GACTTGTGAGTCCGATCCAT 57.030 50.000 0.00 0.00 45.34 3.41
368 369 2.544685 GACTTGTGAGTCCGATCCATG 58.455 52.381 0.00 0.00 45.34 3.66
369 370 1.208052 ACTTGTGAGTCCGATCCATGG 59.792 52.381 4.97 4.97 0.00 3.66
370 371 1.208052 CTTGTGAGTCCGATCCATGGT 59.792 52.381 12.58 0.00 0.00 3.55
371 372 1.275666 TGTGAGTCCGATCCATGGTT 58.724 50.000 12.58 2.52 0.00 3.67
372 373 2.462723 TGTGAGTCCGATCCATGGTTA 58.537 47.619 12.58 0.00 0.00 2.85
373 374 2.430694 TGTGAGTCCGATCCATGGTTAG 59.569 50.000 12.58 3.59 0.00 2.34
374 375 1.412710 TGAGTCCGATCCATGGTTAGC 59.587 52.381 12.58 0.00 0.00 3.09
375 376 0.389391 AGTCCGATCCATGGTTAGCG 59.611 55.000 12.58 7.95 0.00 4.26
376 377 0.387929 GTCCGATCCATGGTTAGCGA 59.612 55.000 12.58 1.30 0.00 4.93
377 378 1.000955 GTCCGATCCATGGTTAGCGAT 59.999 52.381 12.58 0.00 0.00 4.58
378 379 1.000843 TCCGATCCATGGTTAGCGATG 59.999 52.381 12.58 0.00 0.00 3.84
380 381 1.160137 GATCCATGGTTAGCGATGGC 58.840 55.000 14.59 0.00 46.53 4.40
381 382 0.473755 ATCCATGGTTAGCGATGGCA 59.526 50.000 14.59 5.69 46.53 4.92
382 383 0.254462 TCCATGGTTAGCGATGGCAA 59.746 50.000 14.59 0.00 46.53 4.52
383 384 1.102154 CCATGGTTAGCGATGGCAAA 58.898 50.000 7.64 0.00 42.56 3.68
384 385 1.682854 CCATGGTTAGCGATGGCAAAT 59.317 47.619 7.64 0.00 42.56 2.32
385 386 2.544277 CCATGGTTAGCGATGGCAAATG 60.544 50.000 7.64 0.00 42.56 2.32
386 387 1.832883 TGGTTAGCGATGGCAAATGT 58.167 45.000 1.50 0.00 43.41 2.71
387 388 2.166829 TGGTTAGCGATGGCAAATGTT 58.833 42.857 1.50 0.00 43.41 2.71
388 389 2.560542 TGGTTAGCGATGGCAAATGTTT 59.439 40.909 1.50 0.00 43.41 2.83
389 390 3.179048 GGTTAGCGATGGCAAATGTTTC 58.821 45.455 1.50 0.00 43.41 2.78
390 391 3.119495 GGTTAGCGATGGCAAATGTTTCT 60.119 43.478 1.50 0.00 43.41 2.52
391 392 4.485163 GTTAGCGATGGCAAATGTTTCTT 58.515 39.130 1.50 0.00 43.41 2.52
392 393 3.665745 AGCGATGGCAAATGTTTCTTT 57.334 38.095 1.50 0.00 43.41 2.52
393 394 3.993920 AGCGATGGCAAATGTTTCTTTT 58.006 36.364 1.50 0.00 43.41 2.27
394 395 5.132897 AGCGATGGCAAATGTTTCTTTTA 57.867 34.783 1.50 0.00 43.41 1.52
395 396 5.163513 AGCGATGGCAAATGTTTCTTTTAG 58.836 37.500 1.50 0.00 43.41 1.85
396 397 4.327087 GCGATGGCAAATGTTTCTTTTAGG 59.673 41.667 0.00 0.00 39.62 2.69
397 398 4.864247 CGATGGCAAATGTTTCTTTTAGGG 59.136 41.667 0.00 0.00 0.00 3.53
398 399 5.566627 CGATGGCAAATGTTTCTTTTAGGGT 60.567 40.000 0.00 0.00 0.00 4.34
399 400 5.622346 TGGCAAATGTTTCTTTTAGGGTT 57.378 34.783 0.00 0.00 0.00 4.11
400 401 6.732896 TGGCAAATGTTTCTTTTAGGGTTA 57.267 33.333 0.00 0.00 0.00 2.85
401 402 6.517605 TGGCAAATGTTTCTTTTAGGGTTAC 58.482 36.000 0.00 0.00 0.00 2.50
402 403 5.631929 GGCAAATGTTTCTTTTAGGGTTACG 59.368 40.000 0.00 0.00 0.00 3.18
403 404 6.440436 GCAAATGTTTCTTTTAGGGTTACGA 58.560 36.000 0.00 0.00 0.00 3.43
404 405 7.088272 GCAAATGTTTCTTTTAGGGTTACGAT 58.912 34.615 0.00 0.00 0.00 3.73
405 406 7.061789 GCAAATGTTTCTTTTAGGGTTACGATG 59.938 37.037 0.00 0.00 0.00 3.84
406 407 7.989416 AATGTTTCTTTTAGGGTTACGATGA 57.011 32.000 0.00 0.00 0.00 2.92
407 408 6.790285 TGTTTCTTTTAGGGTTACGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
408 409 6.289834 TGTTTCTTTTAGGGTTACGATGACA 58.710 36.000 0.00 0.00 0.00 3.58
409 410 6.203338 TGTTTCTTTTAGGGTTACGATGACAC 59.797 38.462 0.00 0.00 0.00 3.67
410 411 5.733620 TCTTTTAGGGTTACGATGACACT 57.266 39.130 0.00 0.00 34.56 3.55
411 412 6.839124 TCTTTTAGGGTTACGATGACACTA 57.161 37.500 0.00 0.00 32.03 2.74
412 413 7.414222 TCTTTTAGGGTTACGATGACACTAT 57.586 36.000 0.00 0.00 33.33 2.12
413 414 8.523915 TCTTTTAGGGTTACGATGACACTATA 57.476 34.615 0.00 0.00 33.33 1.31
414 415 8.408601 TCTTTTAGGGTTACGATGACACTATAC 58.591 37.037 0.00 0.00 33.33 1.47
415 416 6.639632 TTAGGGTTACGATGACACTATACC 57.360 41.667 0.00 0.00 33.33 2.73
416 417 4.801164 AGGGTTACGATGACACTATACCT 58.199 43.478 0.00 0.00 0.00 3.08
417 418 4.583489 AGGGTTACGATGACACTATACCTG 59.417 45.833 0.00 0.00 0.00 4.00
418 419 4.261909 GGGTTACGATGACACTATACCTGG 60.262 50.000 0.00 0.00 0.00 4.45
419 420 4.296690 GTTACGATGACACTATACCTGGC 58.703 47.826 0.00 0.00 0.00 4.85
420 421 1.687123 ACGATGACACTATACCTGGCC 59.313 52.381 0.00 0.00 0.00 5.36
421 422 1.686587 CGATGACACTATACCTGGCCA 59.313 52.381 4.71 4.71 0.00 5.36
422 423 2.300152 CGATGACACTATACCTGGCCAT 59.700 50.000 5.51 0.00 0.00 4.40
423 424 3.668447 GATGACACTATACCTGGCCATG 58.332 50.000 5.51 6.06 0.00 3.66
424 425 1.768275 TGACACTATACCTGGCCATGG 59.232 52.381 5.51 13.05 0.00 3.66
425 426 1.072331 GACACTATACCTGGCCATGGG 59.928 57.143 20.97 16.10 0.00 4.00
453 454 3.840594 CGAACGGCCCGACCCATA 61.841 66.667 11.71 0.00 33.26 2.74
454 455 2.585698 GAACGGCCCGACCCATAA 59.414 61.111 11.71 0.00 33.26 1.90
455 456 1.078285 GAACGGCCCGACCCATAAA 60.078 57.895 11.71 0.00 33.26 1.40
456 457 0.677414 GAACGGCCCGACCCATAAAA 60.677 55.000 11.71 0.00 33.26 1.52
457 458 0.251253 AACGGCCCGACCCATAAAAA 60.251 50.000 11.71 0.00 33.26 1.94
458 459 0.961857 ACGGCCCGACCCATAAAAAC 60.962 55.000 11.71 0.00 33.26 2.43
459 460 1.659622 CGGCCCGACCCATAAAAACC 61.660 60.000 0.00 0.00 33.26 3.27
460 461 1.324740 GGCCCGACCCATAAAAACCC 61.325 60.000 0.00 0.00 0.00 4.11
461 462 1.659622 GCCCGACCCATAAAAACCCG 61.660 60.000 0.00 0.00 0.00 5.28
462 463 1.033202 CCCGACCCATAAAAACCCGG 61.033 60.000 0.00 0.00 35.68 5.73
463 464 1.659622 CCGACCCATAAAAACCCGGC 61.660 60.000 0.00 0.00 0.00 6.13
464 465 1.659622 CGACCCATAAAAACCCGGCC 61.660 60.000 0.00 0.00 0.00 6.13
465 466 1.305465 ACCCATAAAAACCCGGCCC 60.305 57.895 0.00 0.00 0.00 5.80
466 467 2.419739 CCCATAAAAACCCGGCCCG 61.420 63.158 0.00 0.00 0.00 6.13
468 469 2.756691 ATAAAAACCCGGCCCGGC 60.757 61.111 19.21 0.00 46.86 6.13
486 487 4.278513 CCGACCCAACCTTGCCCA 62.279 66.667 0.00 0.00 0.00 5.36
487 488 2.983592 CGACCCAACCTTGCCCAC 60.984 66.667 0.00 0.00 0.00 4.61
488 489 2.197324 GACCCAACCTTGCCCACA 59.803 61.111 0.00 0.00 0.00 4.17
489 490 1.903404 GACCCAACCTTGCCCACAG 60.903 63.158 0.00 0.00 0.00 3.66
490 491 2.601367 CCCAACCTTGCCCACAGG 60.601 66.667 0.00 0.00 0.00 4.00
512 513 2.427753 GCCCGGGCCTAGATCTTG 59.572 66.667 36.64 0.00 34.56 3.02
513 514 2.140792 GCCCGGGCCTAGATCTTGA 61.141 63.158 36.64 0.00 34.56 3.02
514 515 2.053618 CCCGGGCCTAGATCTTGAG 58.946 63.158 8.08 0.00 0.00 3.02
515 516 0.760945 CCCGGGCCTAGATCTTGAGT 60.761 60.000 8.08 0.00 0.00 3.41
516 517 0.676736 CCGGGCCTAGATCTTGAGTC 59.323 60.000 0.84 0.00 0.00 3.36
517 518 1.403814 CGGGCCTAGATCTTGAGTCA 58.596 55.000 0.84 0.00 0.00 3.41
518 519 1.757118 CGGGCCTAGATCTTGAGTCAA 59.243 52.381 0.84 5.25 0.00 3.18
519 520 2.168521 CGGGCCTAGATCTTGAGTCAAA 59.831 50.000 7.06 0.00 0.00 2.69
520 521 3.181461 CGGGCCTAGATCTTGAGTCAAAT 60.181 47.826 7.06 3.89 0.00 2.32
521 522 4.133078 GGGCCTAGATCTTGAGTCAAATG 58.867 47.826 7.06 0.00 0.00 2.32
522 523 4.141620 GGGCCTAGATCTTGAGTCAAATGA 60.142 45.833 7.06 2.10 0.00 2.57
523 524 4.813697 GGCCTAGATCTTGAGTCAAATGAC 59.186 45.833 7.06 5.40 45.08 3.06
524 525 4.813697 GCCTAGATCTTGAGTCAAATGACC 59.186 45.833 7.06 3.06 45.85 4.02
525 526 5.046529 CCTAGATCTTGAGTCAAATGACCG 58.953 45.833 7.06 0.00 45.85 4.79
526 527 3.866651 AGATCTTGAGTCAAATGACCGG 58.133 45.455 7.06 0.00 45.85 5.28
527 528 3.261897 AGATCTTGAGTCAAATGACCGGT 59.738 43.478 6.92 6.92 45.85 5.28
528 529 3.040147 TCTTGAGTCAAATGACCGGTC 57.960 47.619 28.17 28.17 45.85 4.79
529 530 2.076863 CTTGAGTCAAATGACCGGTCC 58.923 52.381 31.19 14.81 45.85 4.46
530 531 0.037697 TGAGTCAAATGACCGGTCCG 60.038 55.000 31.19 16.84 45.85 4.79
542 543 4.785453 GGTCCGGCTCTGGCTTGG 62.785 72.222 0.00 0.00 38.73 3.61
543 544 4.021925 GTCCGGCTCTGGCTTGGT 62.022 66.667 0.00 0.00 38.73 3.67
544 545 3.706373 TCCGGCTCTGGCTTGGTC 61.706 66.667 0.00 0.00 38.73 4.02
545 546 4.785453 CCGGCTCTGGCTTGGTCC 62.785 72.222 0.00 0.00 38.73 4.46
546 547 3.710722 CGGCTCTGGCTTGGTCCT 61.711 66.667 0.00 0.00 38.73 3.85
547 548 2.045536 GGCTCTGGCTTGGTCCTG 60.046 66.667 0.00 0.00 38.73 3.86
548 549 2.596851 GGCTCTGGCTTGGTCCTGA 61.597 63.158 0.00 0.00 38.73 3.86
549 550 1.606531 GCTCTGGCTTGGTCCTGAT 59.393 57.895 0.00 0.00 34.28 2.90
550 551 0.034670 GCTCTGGCTTGGTCCTGATT 60.035 55.000 0.00 0.00 34.28 2.57
551 552 1.615384 GCTCTGGCTTGGTCCTGATTT 60.615 52.381 0.00 0.00 34.28 2.17
552 553 2.800250 CTCTGGCTTGGTCCTGATTTT 58.200 47.619 0.00 0.00 34.28 1.82
553 554 3.160269 CTCTGGCTTGGTCCTGATTTTT 58.840 45.455 0.00 0.00 34.28 1.94
554 555 4.335416 CTCTGGCTTGGTCCTGATTTTTA 58.665 43.478 0.00 0.00 34.28 1.52
555 556 4.335416 TCTGGCTTGGTCCTGATTTTTAG 58.665 43.478 0.00 0.00 0.00 1.85
556 557 4.042809 TCTGGCTTGGTCCTGATTTTTAGA 59.957 41.667 0.00 0.00 0.00 2.10
557 558 4.079253 TGGCTTGGTCCTGATTTTTAGAC 58.921 43.478 0.00 0.00 0.00 2.59
559 560 3.444034 GCTTGGTCCTGATTTTTAGACCC 59.556 47.826 5.63 0.00 46.80 4.46
560 561 4.811063 GCTTGGTCCTGATTTTTAGACCCT 60.811 45.833 5.63 0.00 46.80 4.34
561 562 5.572885 GCTTGGTCCTGATTTTTAGACCCTA 60.573 44.000 5.63 0.00 46.80 3.53
562 563 5.431179 TGGTCCTGATTTTTAGACCCTAC 57.569 43.478 5.63 0.00 46.80 3.18
563 564 4.081309 TGGTCCTGATTTTTAGACCCTACG 60.081 45.833 5.63 0.00 46.80 3.51
564 565 4.439968 GTCCTGATTTTTAGACCCTACGG 58.560 47.826 0.00 0.00 0.00 4.02
565 566 3.118519 TCCTGATTTTTAGACCCTACGGC 60.119 47.826 0.00 0.00 0.00 5.68
566 567 3.203716 CTGATTTTTAGACCCTACGGCC 58.796 50.000 0.00 0.00 0.00 6.13
567 568 2.207590 GATTTTTAGACCCTACGGCCG 58.792 52.381 26.86 26.86 0.00 6.13
568 569 0.249955 TTTTTAGACCCTACGGCCGG 59.750 55.000 31.76 14.36 0.00 6.13
605 606 4.719997 TTTTTGCGTCGGGCTTTG 57.280 50.000 0.00 0.00 44.05 2.77
606 607 2.107705 TTTTTGCGTCGGGCTTTGA 58.892 47.368 0.00 0.00 44.05 2.69
607 608 0.671251 TTTTTGCGTCGGGCTTTGAT 59.329 45.000 0.00 0.00 44.05 2.57
608 609 1.524848 TTTTGCGTCGGGCTTTGATA 58.475 45.000 0.00 0.00 44.05 2.15
609 610 0.800012 TTTGCGTCGGGCTTTGATAC 59.200 50.000 0.00 0.00 44.05 2.24
610 611 1.355796 TTGCGTCGGGCTTTGATACG 61.356 55.000 0.00 0.00 44.05 3.06
611 612 1.808390 GCGTCGGGCTTTGATACGT 60.808 57.895 0.00 0.00 39.11 3.57
612 613 1.749609 GCGTCGGGCTTTGATACGTC 61.750 60.000 0.00 0.00 39.11 4.34
613 614 1.143969 CGTCGGGCTTTGATACGTCC 61.144 60.000 0.00 0.00 0.00 4.79
614 615 3.700961 CGGGCTTTGATACGTCCG 58.299 61.111 0.00 0.00 42.39 4.79
615 616 1.881252 CGGGCTTTGATACGTCCGG 60.881 63.158 0.00 0.00 44.19 5.14
616 617 1.219935 GGGCTTTGATACGTCCGGT 59.780 57.895 0.00 0.00 0.00 5.28
617 618 0.808847 GGGCTTTGATACGTCCGGTC 60.809 60.000 0.00 0.00 0.00 4.79
618 619 0.175073 GGCTTTGATACGTCCGGTCT 59.825 55.000 0.00 0.00 0.00 3.85
619 620 1.278238 GCTTTGATACGTCCGGTCTG 58.722 55.000 0.00 0.00 0.00 3.51
620 621 1.135199 GCTTTGATACGTCCGGTCTGA 60.135 52.381 0.00 0.00 0.00 3.27
621 622 2.673043 GCTTTGATACGTCCGGTCTGAA 60.673 50.000 0.00 0.00 0.00 3.02
622 623 2.933495 TTGATACGTCCGGTCTGAAG 57.067 50.000 0.00 0.00 0.00 3.02
623 624 0.454600 TGATACGTCCGGTCTGAAGC 59.545 55.000 0.00 0.00 0.00 3.86
624 625 0.248949 GATACGTCCGGTCTGAAGCC 60.249 60.000 0.00 0.00 0.00 4.35
625 626 1.673808 ATACGTCCGGTCTGAAGCCC 61.674 60.000 0.00 0.00 0.00 5.19
626 627 4.796231 CGTCCGGTCTGAAGCCCG 62.796 72.222 0.00 0.00 43.82 6.13
645 646 3.411517 CCCGAGGGATGGCAAGGT 61.412 66.667 0.84 0.00 37.50 3.50
646 647 2.070039 CCCGAGGGATGGCAAGGTA 61.070 63.158 0.84 0.00 37.50 3.08
647 648 1.418908 CCCGAGGGATGGCAAGGTAT 61.419 60.000 0.84 0.00 37.50 2.73
648 649 1.348064 CCGAGGGATGGCAAGGTATA 58.652 55.000 0.00 0.00 0.00 1.47
649 650 1.276421 CCGAGGGATGGCAAGGTATAG 59.724 57.143 0.00 0.00 0.00 1.31
650 651 2.248248 CGAGGGATGGCAAGGTATAGA 58.752 52.381 0.00 0.00 0.00 1.98
651 652 2.834549 CGAGGGATGGCAAGGTATAGAT 59.165 50.000 0.00 0.00 0.00 1.98
705 707 4.409218 GCGGGCACGTACGTCTCA 62.409 66.667 19.94 0.00 43.45 3.27
706 708 2.256158 CGGGCACGTACGTCTCAA 59.744 61.111 19.94 0.00 34.81 3.02
787 789 4.749310 AAGCTCTGTCCGCGCAGG 62.749 66.667 8.75 10.32 42.97 4.85
798 802 2.985139 GTCCGCGCAGGTTATATAGAAC 59.015 50.000 8.75 1.45 41.99 3.01
868 883 6.176975 AGCAAAAACAAAACAAAACCTAGC 57.823 33.333 0.00 0.00 0.00 3.42
1219 1234 1.268539 CGCCCATTAAAATCTGCGGTC 60.269 52.381 7.23 0.00 38.46 4.79
1378 1394 1.066787 GGCTCCTCTCGTTTAGTGCTT 60.067 52.381 0.00 0.00 0.00 3.91
1379 1395 2.263945 GCTCCTCTCGTTTAGTGCTTC 58.736 52.381 0.00 0.00 0.00 3.86
1380 1396 2.520979 CTCCTCTCGTTTAGTGCTTCG 58.479 52.381 0.00 0.00 0.00 3.79
1381 1397 1.884579 TCCTCTCGTTTAGTGCTTCGT 59.115 47.619 0.00 0.00 0.00 3.85
1382 1398 1.986378 CCTCTCGTTTAGTGCTTCGTG 59.014 52.381 0.00 0.00 0.00 4.35
1383 1399 1.387084 CTCTCGTTTAGTGCTTCGTGC 59.613 52.381 0.00 0.00 43.25 5.34
1384 1400 1.000607 TCTCGTTTAGTGCTTCGTGCT 60.001 47.619 5.00 0.00 43.37 4.40
1406 1429 4.286297 TCTGTTTCTGTTAGATGGTGGG 57.714 45.455 0.00 0.00 0.00 4.61
1885 1910 2.507471 AGGTTCTAGGCTTGATTCCAGG 59.493 50.000 17.29 0.00 0.00 4.45
2015 2043 8.767478 TTTAGTGACCAGCTTAATAACACTAC 57.233 34.615 0.00 0.00 38.49 2.73
2037 2065 0.809636 TTCACTCGTGTGTGGCACAG 60.810 55.000 22.75 11.54 45.43 3.66
2096 2124 6.604012 AGTTTAGTATATCAGAGCGTCATCG 58.396 40.000 0.00 0.00 40.37 3.84
2219 2247 2.166870 TCTACCTATGCGCCTTTCGAAA 59.833 45.455 10.71 10.71 41.67 3.46
2257 2285 5.712917 AGAGGTTTTCAAAACTGTGTGGTAA 59.287 36.000 12.74 0.00 35.74 2.85
2258 2286 6.379988 AGAGGTTTTCAAAACTGTGTGGTAAT 59.620 34.615 12.74 0.00 35.74 1.89
2259 2287 6.569780 AGGTTTTCAAAACTGTGTGGTAATC 58.430 36.000 12.74 0.00 33.95 1.75
2260 2288 5.751509 GGTTTTCAAAACTGTGTGGTAATCC 59.248 40.000 12.74 0.00 0.00 3.01
2261 2289 5.523438 TTTCAAAACTGTGTGGTAATCCC 57.477 39.130 0.00 0.00 0.00 3.85
2262 2290 4.447138 TCAAAACTGTGTGGTAATCCCT 57.553 40.909 0.00 0.00 0.00 4.20
2263 2291 4.394729 TCAAAACTGTGTGGTAATCCCTC 58.605 43.478 0.00 0.00 0.00 4.30
2264 2292 3.434940 AAACTGTGTGGTAATCCCTCC 57.565 47.619 0.00 0.00 0.00 4.30
2265 2293 0.902531 ACTGTGTGGTAATCCCTCCG 59.097 55.000 0.00 0.00 0.00 4.63
2266 2294 0.902531 CTGTGTGGTAATCCCTCCGT 59.097 55.000 0.00 0.00 0.00 4.69
2267 2295 0.899720 TGTGTGGTAATCCCTCCGTC 59.100 55.000 0.00 0.00 0.00 4.79
2268 2296 0.177373 GTGTGGTAATCCCTCCGTCC 59.823 60.000 0.00 0.00 0.00 4.79
2269 2297 1.324740 TGTGGTAATCCCTCCGTCCG 61.325 60.000 0.00 0.00 0.00 4.79
2270 2298 1.759299 TGGTAATCCCTCCGTCCGG 60.759 63.158 0.00 0.00 0.00 5.14
2271 2299 1.456331 GGTAATCCCTCCGTCCGGA 60.456 63.158 0.00 0.00 42.90 5.14
2272 2300 1.044790 GGTAATCCCTCCGTCCGGAA 61.045 60.000 5.23 0.00 44.66 4.30
2273 2301 0.826062 GTAATCCCTCCGTCCGGAAA 59.174 55.000 5.23 0.00 44.66 3.13
2274 2302 1.415289 GTAATCCCTCCGTCCGGAAAT 59.585 52.381 5.23 1.49 44.66 2.17
2275 2303 1.797320 AATCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
2276 2304 1.046204 ATCCCTCCGTCCGGAAATAC 58.954 55.000 5.23 0.00 44.66 1.89
2277 2305 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2278 2306 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2279 2307 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2280 2308 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2281 2309 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2282 2310 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2283 2311 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
2284 2312 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
2285 2313 3.119029 CCGTCCGGAAATACTTGTCCTAA 60.119 47.826 5.23 0.00 37.50 2.69
2286 2314 4.497300 CGTCCGGAAATACTTGTCCTAAA 58.503 43.478 5.23 0.00 0.00 1.85
2287 2315 4.931002 CGTCCGGAAATACTTGTCCTAAAA 59.069 41.667 5.23 0.00 0.00 1.52
2288 2316 5.409214 CGTCCGGAAATACTTGTCCTAAAAA 59.591 40.000 5.23 0.00 0.00 1.94
2289 2317 6.093082 CGTCCGGAAATACTTGTCCTAAAAAT 59.907 38.462 5.23 0.00 0.00 1.82
2290 2318 7.248437 GTCCGGAAATACTTGTCCTAAAAATG 58.752 38.462 5.23 0.00 0.00 2.32
2291 2319 6.376018 TCCGGAAATACTTGTCCTAAAAATGG 59.624 38.462 0.00 0.00 0.00 3.16
2292 2320 6.405397 CCGGAAATACTTGTCCTAAAAATGGG 60.405 42.308 0.00 0.00 0.00 4.00
2293 2321 6.152154 CGGAAATACTTGTCCTAAAAATGGGT 59.848 38.462 0.00 0.00 0.00 4.51
2294 2322 7.337436 CGGAAATACTTGTCCTAAAAATGGGTA 59.663 37.037 0.00 0.00 0.00 3.69
2295 2323 8.464404 GGAAATACTTGTCCTAAAAATGGGTAC 58.536 37.037 0.00 0.00 0.00 3.34
2296 2324 8.943594 AAATACTTGTCCTAAAAATGGGTACA 57.056 30.769 0.00 0.00 0.00 2.90
2297 2325 8.943594 AATACTTGTCCTAAAAATGGGTACAA 57.056 30.769 0.00 0.00 0.00 2.41
2298 2326 8.943594 ATACTTGTCCTAAAAATGGGTACAAA 57.056 30.769 0.00 0.00 0.00 2.83
2299 2327 7.849322 ACTTGTCCTAAAAATGGGTACAAAT 57.151 32.000 0.00 0.00 0.00 2.32
2300 2328 7.666623 ACTTGTCCTAAAAATGGGTACAAATG 58.333 34.615 0.00 0.00 0.00 2.32
2301 2329 6.597832 TGTCCTAAAAATGGGTACAAATGG 57.402 37.500 0.00 0.00 0.00 3.16
2302 2330 6.315714 TGTCCTAAAAATGGGTACAAATGGA 58.684 36.000 0.00 0.00 0.00 3.41
2303 2331 6.957020 TGTCCTAAAAATGGGTACAAATGGAT 59.043 34.615 0.00 0.00 0.00 3.41
2304 2332 7.093552 TGTCCTAAAAATGGGTACAAATGGATG 60.094 37.037 0.00 0.00 0.00 3.51
2305 2333 6.957020 TCCTAAAAATGGGTACAAATGGATGT 59.043 34.615 0.00 0.00 37.32 3.06
2306 2334 8.116669 TCCTAAAAATGGGTACAAATGGATGTA 58.883 33.333 0.00 0.00 34.75 2.29
2307 2335 8.923270 CCTAAAAATGGGTACAAATGGATGTAT 58.077 33.333 0.00 0.00 38.03 2.29
2308 2336 9.965824 CTAAAAATGGGTACAAATGGATGTATC 57.034 33.333 0.00 0.00 38.03 2.24
2309 2337 8.608185 AAAAATGGGTACAAATGGATGTATCT 57.392 30.769 0.00 0.00 37.14 1.98
2310 2338 9.707957 AAAAATGGGTACAAATGGATGTATCTA 57.292 29.630 0.00 0.00 37.14 1.98
2311 2339 8.924511 AAATGGGTACAAATGGATGTATCTAG 57.075 34.615 0.00 0.00 37.14 2.43
2312 2340 7.872061 ATGGGTACAAATGGATGTATCTAGA 57.128 36.000 0.00 0.00 37.14 2.43
2313 2341 7.684317 TGGGTACAAATGGATGTATCTAGAA 57.316 36.000 0.00 0.00 37.14 2.10
2314 2342 7.506114 TGGGTACAAATGGATGTATCTAGAAC 58.494 38.462 0.00 0.00 37.14 3.01
2315 2343 7.347222 TGGGTACAAATGGATGTATCTAGAACT 59.653 37.037 0.00 0.00 37.14 3.01
2316 2344 8.867097 GGGTACAAATGGATGTATCTAGAACTA 58.133 37.037 0.00 0.00 37.14 2.24
2358 2386 5.235305 CATTCCTTGGACAAGTATTTCCG 57.765 43.478 10.81 0.00 36.72 4.30
2359 2387 3.343941 TCCTTGGACAAGTATTTCCGG 57.656 47.619 10.81 0.00 36.72 5.14
2360 2388 2.907696 TCCTTGGACAAGTATTTCCGGA 59.092 45.455 0.00 0.00 36.72 5.14
2361 2389 3.007635 CCTTGGACAAGTATTTCCGGAC 58.992 50.000 1.83 0.00 36.72 4.79
2362 2390 2.373540 TGGACAAGTATTTCCGGACG 57.626 50.000 1.83 0.00 34.24 4.79
2363 2391 1.066716 TGGACAAGTATTTCCGGACGG 60.067 52.381 1.83 3.96 34.24 4.79
2364 2392 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2365 2393 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2366 2394 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2367 2395 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2368 2396 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2369 2397 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2370 2398 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2371 2399 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3004 3035 0.182299 GCCTTTCTCCTGATCTGGGG 59.818 60.000 17.73 15.14 0.00 4.96
3480 3511 6.949578 ATCAAATTTATGGCGTCAAACAAG 57.050 33.333 0.00 0.00 0.00 3.16
3690 3722 1.324383 CCACCGGCAAAACCTTAGTT 58.676 50.000 0.00 0.00 38.03 2.24
3846 3878 4.191544 TGTGAAAGGAATGCTATTCTCCG 58.808 43.478 8.23 0.00 34.22 4.63
4096 4128 5.763204 TGTTAAGAAACCTGCAAGACTTAGG 59.237 40.000 2.89 2.89 34.49 2.69
4130 4165 6.381801 CGAAGGCAGATTTTACTTGAACAAT 58.618 36.000 0.00 0.00 0.00 2.71
4255 4290 3.134623 TCCAGCAAGATTATCACGTGGAT 59.865 43.478 17.00 10.42 40.14 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.807895 ATTCCGCGTCGTCCGTTG 60.808 61.111 4.92 0.00 39.32 4.10
6 7 2.752322 TTCATTCCGCGTCGTCCGTT 62.752 55.000 4.92 0.00 39.32 4.44
7 8 3.271706 TTCATTCCGCGTCGTCCGT 62.272 57.895 4.92 0.00 39.32 4.69
8 9 2.505337 TTCATTCCGCGTCGTCCG 60.505 61.111 4.92 0.00 40.40 4.79
9 10 1.411493 GAGTTCATTCCGCGTCGTCC 61.411 60.000 4.92 0.00 0.00 4.79
10 11 0.456312 AGAGTTCATTCCGCGTCGTC 60.456 55.000 4.92 0.00 0.00 4.20
11 12 0.456312 GAGAGTTCATTCCGCGTCGT 60.456 55.000 4.92 0.00 0.00 4.34
12 13 1.464429 CGAGAGTTCATTCCGCGTCG 61.464 60.000 4.92 0.00 0.00 5.12
13 14 1.743855 GCGAGAGTTCATTCCGCGTC 61.744 60.000 4.92 0.00 36.53 5.19
14 15 1.805945 GCGAGAGTTCATTCCGCGT 60.806 57.895 4.92 0.00 36.53 6.01
15 16 2.998667 GCGAGAGTTCATTCCGCG 59.001 61.111 0.00 0.00 36.53 6.46
16 17 2.998667 CGCGAGAGTTCATTCCGC 59.001 61.111 0.00 0.00 42.11 5.54
17 18 2.849966 CGCGCGAGAGTTCATTCCG 61.850 63.158 28.94 0.00 0.00 4.30
18 19 2.517450 CCGCGCGAGAGTTCATTCC 61.517 63.158 34.63 0.00 0.00 3.01
19 20 2.998667 CCGCGCGAGAGTTCATTC 59.001 61.111 34.63 0.00 0.00 2.67
20 21 3.188786 GCCGCGCGAGAGTTCATT 61.189 61.111 34.63 0.00 0.00 2.57
36 37 4.069232 GCCTTTTGGGGGCTTCGC 62.069 66.667 0.00 0.00 45.57 4.70
45 46 1.102978 CTGGAATACCCGCCTTTTGG 58.897 55.000 0.00 0.00 37.93 3.28
46 47 0.455815 GCTGGAATACCCGCCTTTTG 59.544 55.000 0.00 0.00 39.87 2.44
47 48 0.039035 TGCTGGAATACCCGCCTTTT 59.961 50.000 0.00 0.00 44.05 2.27
48 49 0.258774 ATGCTGGAATACCCGCCTTT 59.741 50.000 0.00 0.00 44.05 3.11
49 50 0.258774 AATGCTGGAATACCCGCCTT 59.741 50.000 0.00 0.00 44.05 4.35
50 51 0.258774 AAATGCTGGAATACCCGCCT 59.741 50.000 0.00 0.00 44.05 5.52
51 52 1.111277 AAAATGCTGGAATACCCGCC 58.889 50.000 0.00 0.00 44.05 6.13
52 53 2.959507 AAAAATGCTGGAATACCCGC 57.040 45.000 0.00 0.00 44.73 6.13
53 54 6.001460 TCCTATAAAAATGCTGGAATACCCG 58.999 40.000 0.00 0.00 37.93 5.28
54 55 7.004691 ACTCCTATAAAAATGCTGGAATACCC 58.995 38.462 0.00 0.00 34.81 3.69
55 56 9.569122 TTACTCCTATAAAAATGCTGGAATACC 57.431 33.333 0.00 0.00 0.00 2.73
58 59 9.866655 TCATTACTCCTATAAAAATGCTGGAAT 57.133 29.630 0.00 0.00 0.00 3.01
59 60 9.342308 CTCATTACTCCTATAAAAATGCTGGAA 57.658 33.333 0.00 0.00 0.00 3.53
60 61 7.445402 GCTCATTACTCCTATAAAAATGCTGGA 59.555 37.037 0.00 0.00 0.00 3.86
61 62 7.571983 CGCTCATTACTCCTATAAAAATGCTGG 60.572 40.741 0.00 0.00 0.00 4.85
62 63 7.041780 ACGCTCATTACTCCTATAAAAATGCTG 60.042 37.037 0.00 0.00 0.00 4.41
63 64 6.992715 ACGCTCATTACTCCTATAAAAATGCT 59.007 34.615 0.00 0.00 0.00 3.79
64 65 7.072030 CACGCTCATTACTCCTATAAAAATGC 58.928 38.462 0.00 0.00 0.00 3.56
65 66 8.142994 ACACGCTCATTACTCCTATAAAAATG 57.857 34.615 0.00 0.00 0.00 2.32
66 67 9.477484 CTACACGCTCATTACTCCTATAAAAAT 57.523 33.333 0.00 0.00 0.00 1.82
67 68 8.472413 ACTACACGCTCATTACTCCTATAAAAA 58.528 33.333 0.00 0.00 0.00 1.94
68 69 8.004087 ACTACACGCTCATTACTCCTATAAAA 57.996 34.615 0.00 0.00 0.00 1.52
69 70 7.578310 ACTACACGCTCATTACTCCTATAAA 57.422 36.000 0.00 0.00 0.00 1.40
70 71 7.067859 ACAACTACACGCTCATTACTCCTATAA 59.932 37.037 0.00 0.00 0.00 0.98
71 72 6.544931 ACAACTACACGCTCATTACTCCTATA 59.455 38.462 0.00 0.00 0.00 1.31
72 73 5.360144 ACAACTACACGCTCATTACTCCTAT 59.640 40.000 0.00 0.00 0.00 2.57
73 74 4.703575 ACAACTACACGCTCATTACTCCTA 59.296 41.667 0.00 0.00 0.00 2.94
74 75 3.510360 ACAACTACACGCTCATTACTCCT 59.490 43.478 0.00 0.00 0.00 3.69
75 76 3.612860 CACAACTACACGCTCATTACTCC 59.387 47.826 0.00 0.00 0.00 3.85
76 77 4.482386 TCACAACTACACGCTCATTACTC 58.518 43.478 0.00 0.00 0.00 2.59
77 78 4.514781 TCACAACTACACGCTCATTACT 57.485 40.909 0.00 0.00 0.00 2.24
78 79 5.585500 TTTCACAACTACACGCTCATTAC 57.415 39.130 0.00 0.00 0.00 1.89
79 80 6.606234 TTTTTCACAACTACACGCTCATTA 57.394 33.333 0.00 0.00 0.00 1.90
80 81 5.493133 TTTTTCACAACTACACGCTCATT 57.507 34.783 0.00 0.00 0.00 2.57
81 82 5.689383 ATTTTTCACAACTACACGCTCAT 57.311 34.783 0.00 0.00 0.00 2.90
82 83 6.606234 TTATTTTTCACAACTACACGCTCA 57.394 33.333 0.00 0.00 0.00 4.26
83 84 9.769093 AATATTATTTTTCACAACTACACGCTC 57.231 29.630 0.00 0.00 0.00 5.03
84 85 9.554724 CAATATTATTTTTCACAACTACACGCT 57.445 29.630 0.00 0.00 0.00 5.07
85 86 9.549509 TCAATATTATTTTTCACAACTACACGC 57.450 29.630 0.00 0.00 0.00 5.34
111 112 9.429359 CGAGCATTTACAAAGATATAGGAGATT 57.571 33.333 0.00 0.00 0.00 2.40
112 113 8.589338 ACGAGCATTTACAAAGATATAGGAGAT 58.411 33.333 0.00 0.00 0.00 2.75
113 114 7.952671 ACGAGCATTTACAAAGATATAGGAGA 58.047 34.615 0.00 0.00 0.00 3.71
114 115 9.862371 ATACGAGCATTTACAAAGATATAGGAG 57.138 33.333 0.00 0.00 0.00 3.69
119 120 9.864034 CGAAAATACGAGCATTTACAAAGATAT 57.136 29.630 0.00 0.00 35.09 1.63
120 121 9.089601 TCGAAAATACGAGCATTTACAAAGATA 57.910 29.630 0.00 0.00 37.37 1.98
121 122 7.970384 TCGAAAATACGAGCATTTACAAAGAT 58.030 30.769 0.00 0.00 37.37 2.40
122 123 7.354025 TCGAAAATACGAGCATTTACAAAGA 57.646 32.000 0.00 0.00 37.37 2.52
135 136 6.384224 ACAAGTACATCACTCGAAAATACGA 58.616 36.000 0.00 0.00 36.04 3.43
136 137 6.627690 ACAAGTACATCACTCGAAAATACG 57.372 37.500 0.00 0.00 36.04 3.06
137 138 9.314501 GAAAACAAGTACATCACTCGAAAATAC 57.685 33.333 0.00 0.00 36.04 1.89
138 139 9.268268 AGAAAACAAGTACATCACTCGAAAATA 57.732 29.630 0.00 0.00 36.04 1.40
139 140 8.154649 AGAAAACAAGTACATCACTCGAAAAT 57.845 30.769 0.00 0.00 36.04 1.82
140 141 7.548196 AGAAAACAAGTACATCACTCGAAAA 57.452 32.000 0.00 0.00 36.04 2.29
141 142 7.406553 CAAGAAAACAAGTACATCACTCGAAA 58.593 34.615 0.00 0.00 36.04 3.46
142 143 6.018262 CCAAGAAAACAAGTACATCACTCGAA 60.018 38.462 0.00 0.00 36.04 3.71
143 144 5.465390 CCAAGAAAACAAGTACATCACTCGA 59.535 40.000 0.00 0.00 36.04 4.04
144 145 5.465390 TCCAAGAAAACAAGTACATCACTCG 59.535 40.000 0.00 0.00 36.04 4.18
145 146 6.861065 TCCAAGAAAACAAGTACATCACTC 57.139 37.500 0.00 0.00 36.04 3.51
146 147 6.207417 CCATCCAAGAAAACAAGTACATCACT 59.793 38.462 0.00 0.00 40.05 3.41
147 148 6.381801 CCATCCAAGAAAACAAGTACATCAC 58.618 40.000 0.00 0.00 0.00 3.06
148 149 5.476599 CCCATCCAAGAAAACAAGTACATCA 59.523 40.000 0.00 0.00 0.00 3.07
149 150 5.105756 CCCCATCCAAGAAAACAAGTACATC 60.106 44.000 0.00 0.00 0.00 3.06
150 151 4.772100 CCCCATCCAAGAAAACAAGTACAT 59.228 41.667 0.00 0.00 0.00 2.29
151 152 4.148838 CCCCATCCAAGAAAACAAGTACA 58.851 43.478 0.00 0.00 0.00 2.90
152 153 3.509967 CCCCCATCCAAGAAAACAAGTAC 59.490 47.826 0.00 0.00 0.00 2.73
153 154 3.399644 TCCCCCATCCAAGAAAACAAGTA 59.600 43.478 0.00 0.00 0.00 2.24
154 155 2.178984 TCCCCCATCCAAGAAAACAAGT 59.821 45.455 0.00 0.00 0.00 3.16
155 156 2.827921 CTCCCCCATCCAAGAAAACAAG 59.172 50.000 0.00 0.00 0.00 3.16
156 157 2.888212 CTCCCCCATCCAAGAAAACAA 58.112 47.619 0.00 0.00 0.00 2.83
157 158 1.549950 GCTCCCCCATCCAAGAAAACA 60.550 52.381 0.00 0.00 0.00 2.83
158 159 1.186200 GCTCCCCCATCCAAGAAAAC 58.814 55.000 0.00 0.00 0.00 2.43
159 160 1.084018 AGCTCCCCCATCCAAGAAAA 58.916 50.000 0.00 0.00 0.00 2.29
160 161 0.332632 CAGCTCCCCCATCCAAGAAA 59.667 55.000 0.00 0.00 0.00 2.52
161 162 1.574526 CCAGCTCCCCCATCCAAGAA 61.575 60.000 0.00 0.00 0.00 2.52
162 163 2.002977 CCAGCTCCCCCATCCAAGA 61.003 63.158 0.00 0.00 0.00 3.02
163 164 2.599597 CCAGCTCCCCCATCCAAG 59.400 66.667 0.00 0.00 0.00 3.61
164 165 3.023116 CCCAGCTCCCCCATCCAA 61.023 66.667 0.00 0.00 0.00 3.53
165 166 4.037413 TCCCAGCTCCCCCATCCA 62.037 66.667 0.00 0.00 0.00 3.41
166 167 3.174265 CTCCCAGCTCCCCCATCC 61.174 72.222 0.00 0.00 0.00 3.51
167 168 2.040464 TCTCCCAGCTCCCCCATC 60.040 66.667 0.00 0.00 0.00 3.51
168 169 1.983035 ATCTCTCCCAGCTCCCCCAT 61.983 60.000 0.00 0.00 0.00 4.00
169 170 1.304179 TATCTCTCCCAGCTCCCCCA 61.304 60.000 0.00 0.00 0.00 4.96
170 171 0.118144 ATATCTCTCCCAGCTCCCCC 59.882 60.000 0.00 0.00 0.00 5.40
171 172 2.037385 AATATCTCTCCCAGCTCCCC 57.963 55.000 0.00 0.00 0.00 4.81
172 173 4.445557 AAAAATATCTCTCCCAGCTCCC 57.554 45.455 0.00 0.00 0.00 4.30
225 226 9.588096 ACCCTTATTGAAATCTGTAAAAAGACT 57.412 29.630 0.00 0.00 0.00 3.24
226 227 9.841880 GACCCTTATTGAAATCTGTAAAAAGAC 57.158 33.333 0.00 0.00 0.00 3.01
227 228 9.807921 AGACCCTTATTGAAATCTGTAAAAAGA 57.192 29.630 0.00 0.00 0.00 2.52
231 232 9.444600 GTGTAGACCCTTATTGAAATCTGTAAA 57.555 33.333 0.00 0.00 0.00 2.01
232 233 8.598916 TGTGTAGACCCTTATTGAAATCTGTAA 58.401 33.333 0.00 0.00 0.00 2.41
233 234 8.038944 GTGTGTAGACCCTTATTGAAATCTGTA 58.961 37.037 0.00 0.00 0.00 2.74
234 235 6.879458 GTGTGTAGACCCTTATTGAAATCTGT 59.121 38.462 0.00 0.00 0.00 3.41
235 236 6.878923 TGTGTGTAGACCCTTATTGAAATCTG 59.121 38.462 0.00 0.00 0.00 2.90
236 237 7.016153 TGTGTGTAGACCCTTATTGAAATCT 57.984 36.000 0.00 0.00 0.00 2.40
237 238 7.103641 TCTGTGTGTAGACCCTTATTGAAATC 58.896 38.462 0.00 0.00 0.00 2.17
238 239 7.016153 TCTGTGTGTAGACCCTTATTGAAAT 57.984 36.000 0.00 0.00 0.00 2.17
239 240 6.428083 TCTGTGTGTAGACCCTTATTGAAA 57.572 37.500 0.00 0.00 0.00 2.69
240 241 6.406370 CATCTGTGTGTAGACCCTTATTGAA 58.594 40.000 0.00 0.00 0.00 2.69
241 242 5.626809 GCATCTGTGTGTAGACCCTTATTGA 60.627 44.000 0.00 0.00 0.00 2.57
242 243 4.572389 GCATCTGTGTGTAGACCCTTATTG 59.428 45.833 0.00 0.00 0.00 1.90
243 244 4.225042 TGCATCTGTGTGTAGACCCTTATT 59.775 41.667 0.00 0.00 0.00 1.40
244 245 3.774766 TGCATCTGTGTGTAGACCCTTAT 59.225 43.478 0.00 0.00 0.00 1.73
245 246 3.169908 TGCATCTGTGTGTAGACCCTTA 58.830 45.455 0.00 0.00 0.00 2.69
246 247 1.977854 TGCATCTGTGTGTAGACCCTT 59.022 47.619 0.00 0.00 0.00 3.95
247 248 1.644509 TGCATCTGTGTGTAGACCCT 58.355 50.000 0.00 0.00 0.00 4.34
248 249 2.698855 ATGCATCTGTGTGTAGACCC 57.301 50.000 0.00 0.00 0.00 4.46
249 250 6.153067 GTCTATATGCATCTGTGTGTAGACC 58.847 44.000 0.19 0.00 33.85 3.85
250 251 6.739112 TGTCTATATGCATCTGTGTGTAGAC 58.261 40.000 0.19 7.55 38.04 2.59
251 252 6.959639 TGTCTATATGCATCTGTGTGTAGA 57.040 37.500 0.19 0.00 0.00 2.59
252 253 9.866798 ATTATGTCTATATGCATCTGTGTGTAG 57.133 33.333 0.19 0.00 0.00 2.74
254 255 9.565090 AAATTATGTCTATATGCATCTGTGTGT 57.435 29.630 0.19 0.00 0.00 3.72
281 282 9.860898 GGAGCAAAATAAGTGAATCTACATTTT 57.139 29.630 0.00 0.00 34.31 1.82
282 283 8.184192 CGGAGCAAAATAAGTGAATCTACATTT 58.816 33.333 0.00 0.00 0.00 2.32
283 284 7.336931 ACGGAGCAAAATAAGTGAATCTACATT 59.663 33.333 0.00 0.00 0.00 2.71
284 285 6.823689 ACGGAGCAAAATAAGTGAATCTACAT 59.176 34.615 0.00 0.00 0.00 2.29
285 286 6.170506 ACGGAGCAAAATAAGTGAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
286 287 6.663944 ACGGAGCAAAATAAGTGAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
291 292 9.135843 CGATATATACGGAGCAAAATAAGTGAA 57.864 33.333 0.00 0.00 0.00 3.18
292 293 8.517056 TCGATATATACGGAGCAAAATAAGTGA 58.483 33.333 0.00 0.00 0.00 3.41
293 294 8.683550 TCGATATATACGGAGCAAAATAAGTG 57.316 34.615 0.00 0.00 0.00 3.16
294 295 9.355215 CTTCGATATATACGGAGCAAAATAAGT 57.645 33.333 0.00 0.00 29.67 2.24
295 296 8.808529 CCTTCGATATATACGGAGCAAAATAAG 58.191 37.037 7.13 0.00 35.34 1.73
296 297 7.762615 CCCTTCGATATATACGGAGCAAAATAA 59.237 37.037 7.13 0.00 35.34 1.40
297 298 7.123098 TCCCTTCGATATATACGGAGCAAAATA 59.877 37.037 7.13 0.00 35.34 1.40
298 299 6.070995 TCCCTTCGATATATACGGAGCAAAAT 60.071 38.462 7.13 0.00 35.34 1.82
299 300 5.244402 TCCCTTCGATATATACGGAGCAAAA 59.756 40.000 7.13 0.00 35.34 2.44
300 301 4.768448 TCCCTTCGATATATACGGAGCAAA 59.232 41.667 7.13 0.00 35.34 3.68
301 302 4.338012 TCCCTTCGATATATACGGAGCAA 58.662 43.478 7.13 0.00 35.34 3.91
302 303 3.945921 CTCCCTTCGATATATACGGAGCA 59.054 47.826 7.13 0.00 35.34 4.26
303 304 3.946558 ACTCCCTTCGATATATACGGAGC 59.053 47.826 0.00 0.00 35.34 4.70
304 305 6.111382 TGTACTCCCTTCGATATATACGGAG 58.889 44.000 0.00 0.00 36.29 4.63
305 306 6.053632 TGTACTCCCTTCGATATATACGGA 57.946 41.667 0.00 0.00 0.00 4.69
306 307 6.748333 TTGTACTCCCTTCGATATATACGG 57.252 41.667 0.00 0.00 0.00 4.02
307 308 7.587629 TGTTTGTACTCCCTTCGATATATACG 58.412 38.462 0.00 0.00 0.00 3.06
308 309 9.754382 TTTGTTTGTACTCCCTTCGATATATAC 57.246 33.333 0.00 0.00 0.00 1.47
310 311 9.326413 CTTTTGTTTGTACTCCCTTCGATATAT 57.674 33.333 0.00 0.00 0.00 0.86
311 312 7.767198 CCTTTTGTTTGTACTCCCTTCGATATA 59.233 37.037 0.00 0.00 0.00 0.86
312 313 6.598064 CCTTTTGTTTGTACTCCCTTCGATAT 59.402 38.462 0.00 0.00 0.00 1.63
313 314 5.935789 CCTTTTGTTTGTACTCCCTTCGATA 59.064 40.000 0.00 0.00 0.00 2.92
314 315 4.760204 CCTTTTGTTTGTACTCCCTTCGAT 59.240 41.667 0.00 0.00 0.00 3.59
315 316 4.131596 CCTTTTGTTTGTACTCCCTTCGA 58.868 43.478 0.00 0.00 0.00 3.71
316 317 3.252458 CCCTTTTGTTTGTACTCCCTTCG 59.748 47.826 0.00 0.00 0.00 3.79
317 318 3.572682 CCCCTTTTGTTTGTACTCCCTTC 59.427 47.826 0.00 0.00 0.00 3.46
318 319 3.052414 ACCCCTTTTGTTTGTACTCCCTT 60.052 43.478 0.00 0.00 0.00 3.95
319 320 2.516702 ACCCCTTTTGTTTGTACTCCCT 59.483 45.455 0.00 0.00 0.00 4.20
320 321 2.953453 ACCCCTTTTGTTTGTACTCCC 58.047 47.619 0.00 0.00 0.00 4.30
321 322 3.069016 CCAACCCCTTTTGTTTGTACTCC 59.931 47.826 0.00 0.00 0.00 3.85
322 323 3.702548 ACCAACCCCTTTTGTTTGTACTC 59.297 43.478 0.00 0.00 0.00 2.59
323 324 3.715287 ACCAACCCCTTTTGTTTGTACT 58.285 40.909 0.00 0.00 0.00 2.73
324 325 4.185394 CAACCAACCCCTTTTGTTTGTAC 58.815 43.478 0.00 0.00 27.45 2.90
325 326 3.838903 ACAACCAACCCCTTTTGTTTGTA 59.161 39.130 0.00 0.00 39.51 2.41
326 327 2.640332 ACAACCAACCCCTTTTGTTTGT 59.360 40.909 0.00 0.00 37.30 2.83
327 328 3.006247 CACAACCAACCCCTTTTGTTTG 58.994 45.455 0.00 0.00 35.58 2.93
328 329 2.907042 TCACAACCAACCCCTTTTGTTT 59.093 40.909 0.00 0.00 29.65 2.83
329 330 2.235155 GTCACAACCAACCCCTTTTGTT 59.765 45.455 0.00 0.00 29.65 2.83
330 331 1.828595 GTCACAACCAACCCCTTTTGT 59.171 47.619 0.00 0.00 32.34 2.83
331 332 2.107366 AGTCACAACCAACCCCTTTTG 58.893 47.619 0.00 0.00 0.00 2.44
332 333 2.499693 CAAGTCACAACCAACCCCTTTT 59.500 45.455 0.00 0.00 0.00 2.27
333 334 2.107366 CAAGTCACAACCAACCCCTTT 58.893 47.619 0.00 0.00 0.00 3.11
334 335 1.006639 ACAAGTCACAACCAACCCCTT 59.993 47.619 0.00 0.00 0.00 3.95
335 336 0.629058 ACAAGTCACAACCAACCCCT 59.371 50.000 0.00 0.00 0.00 4.79
336 337 0.744281 CACAAGTCACAACCAACCCC 59.256 55.000 0.00 0.00 0.00 4.95
337 338 1.676006 CTCACAAGTCACAACCAACCC 59.324 52.381 0.00 0.00 0.00 4.11
338 339 2.365582 ACTCACAAGTCACAACCAACC 58.634 47.619 0.00 0.00 0.00 3.77
349 350 1.208052 CCATGGATCGGACTCACAAGT 59.792 52.381 5.56 0.00 38.88 3.16
350 351 1.208052 ACCATGGATCGGACTCACAAG 59.792 52.381 21.47 0.00 0.00 3.16
351 352 1.275666 ACCATGGATCGGACTCACAA 58.724 50.000 21.47 0.00 0.00 3.33
352 353 1.275666 AACCATGGATCGGACTCACA 58.724 50.000 21.47 0.00 0.00 3.58
353 354 2.803492 GCTAACCATGGATCGGACTCAC 60.803 54.545 21.47 0.00 0.00 3.51
354 355 1.412710 GCTAACCATGGATCGGACTCA 59.587 52.381 21.47 0.00 0.00 3.41
355 356 1.603172 CGCTAACCATGGATCGGACTC 60.603 57.143 21.47 0.00 0.00 3.36
356 357 0.389391 CGCTAACCATGGATCGGACT 59.611 55.000 21.47 0.00 0.00 3.85
357 358 0.387929 TCGCTAACCATGGATCGGAC 59.612 55.000 21.47 1.37 0.00 4.79
358 359 1.000843 CATCGCTAACCATGGATCGGA 59.999 52.381 21.47 9.15 0.00 4.55
359 360 1.432514 CATCGCTAACCATGGATCGG 58.567 55.000 21.47 4.60 0.00 4.18
360 361 1.432514 CCATCGCTAACCATGGATCG 58.567 55.000 21.47 15.07 42.11 3.69
361 362 1.160137 GCCATCGCTAACCATGGATC 58.840 55.000 21.47 2.99 42.11 3.36
362 363 0.473755 TGCCATCGCTAACCATGGAT 59.526 50.000 21.47 9.83 42.11 3.41
363 364 0.254462 TTGCCATCGCTAACCATGGA 59.746 50.000 21.47 0.00 42.11 3.41
364 365 1.102154 TTTGCCATCGCTAACCATGG 58.898 50.000 11.19 11.19 42.39 3.66
365 366 2.099592 ACATTTGCCATCGCTAACCATG 59.900 45.455 0.00 0.00 32.49 3.66
366 367 2.378038 ACATTTGCCATCGCTAACCAT 58.622 42.857 0.00 0.00 32.49 3.55
367 368 1.832883 ACATTTGCCATCGCTAACCA 58.167 45.000 0.00 0.00 32.49 3.67
368 369 2.939460 AACATTTGCCATCGCTAACC 57.061 45.000 0.00 0.00 32.49 2.85
369 370 4.096732 AGAAACATTTGCCATCGCTAAC 57.903 40.909 0.00 0.00 32.49 2.34
370 371 4.782019 AAGAAACATTTGCCATCGCTAA 57.218 36.364 0.00 0.00 34.22 3.09
371 372 4.782019 AAAGAAACATTTGCCATCGCTA 57.218 36.364 0.00 0.00 35.36 4.26
372 373 3.665745 AAAGAAACATTTGCCATCGCT 57.334 38.095 0.00 0.00 35.36 4.93
373 374 4.327087 CCTAAAAGAAACATTTGCCATCGC 59.673 41.667 0.00 0.00 0.00 4.58
374 375 4.864247 CCCTAAAAGAAACATTTGCCATCG 59.136 41.667 0.00 0.00 0.00 3.84
375 376 5.793817 ACCCTAAAAGAAACATTTGCCATC 58.206 37.500 0.00 0.00 0.00 3.51
376 377 5.823861 ACCCTAAAAGAAACATTTGCCAT 57.176 34.783 0.00 0.00 0.00 4.40
377 378 5.622346 AACCCTAAAAGAAACATTTGCCA 57.378 34.783 0.00 0.00 0.00 4.92
378 379 5.631929 CGTAACCCTAAAAGAAACATTTGCC 59.368 40.000 0.00 0.00 0.00 4.52
379 380 6.440436 TCGTAACCCTAAAAGAAACATTTGC 58.560 36.000 0.00 0.00 0.00 3.68
380 381 8.293867 TCATCGTAACCCTAAAAGAAACATTTG 58.706 33.333 0.00 0.00 0.00 2.32
381 382 8.294577 GTCATCGTAACCCTAAAAGAAACATTT 58.705 33.333 0.00 0.00 0.00 2.32
382 383 7.446013 TGTCATCGTAACCCTAAAAGAAACATT 59.554 33.333 0.00 0.00 0.00 2.71
383 384 6.938030 TGTCATCGTAACCCTAAAAGAAACAT 59.062 34.615 0.00 0.00 0.00 2.71
384 385 6.203338 GTGTCATCGTAACCCTAAAAGAAACA 59.797 38.462 0.00 0.00 0.00 2.83
385 386 6.426025 AGTGTCATCGTAACCCTAAAAGAAAC 59.574 38.462 0.00 0.00 0.00 2.78
386 387 6.527423 AGTGTCATCGTAACCCTAAAAGAAA 58.473 36.000 0.00 0.00 0.00 2.52
387 388 6.105397 AGTGTCATCGTAACCCTAAAAGAA 57.895 37.500 0.00 0.00 0.00 2.52
388 389 5.733620 AGTGTCATCGTAACCCTAAAAGA 57.266 39.130 0.00 0.00 0.00 2.52
389 390 7.650903 GGTATAGTGTCATCGTAACCCTAAAAG 59.349 40.741 0.00 0.00 0.00 2.27
390 391 7.342799 AGGTATAGTGTCATCGTAACCCTAAAA 59.657 37.037 0.00 0.00 0.00 1.52
391 392 6.835488 AGGTATAGTGTCATCGTAACCCTAAA 59.165 38.462 0.00 0.00 0.00 1.85
392 393 6.263842 CAGGTATAGTGTCATCGTAACCCTAA 59.736 42.308 0.00 0.00 0.00 2.69
393 394 5.766670 CAGGTATAGTGTCATCGTAACCCTA 59.233 44.000 0.00 0.00 0.00 3.53
394 395 4.583489 CAGGTATAGTGTCATCGTAACCCT 59.417 45.833 0.00 0.00 0.00 4.34
395 396 4.261909 CCAGGTATAGTGTCATCGTAACCC 60.262 50.000 0.00 0.00 0.00 4.11
396 397 4.795308 GCCAGGTATAGTGTCATCGTAACC 60.795 50.000 0.00 0.00 0.00 2.85
397 398 4.296690 GCCAGGTATAGTGTCATCGTAAC 58.703 47.826 0.00 0.00 0.00 2.50
398 399 3.319972 GGCCAGGTATAGTGTCATCGTAA 59.680 47.826 0.00 0.00 0.00 3.18
399 400 2.889045 GGCCAGGTATAGTGTCATCGTA 59.111 50.000 0.00 0.00 0.00 3.43
400 401 1.687123 GGCCAGGTATAGTGTCATCGT 59.313 52.381 0.00 0.00 0.00 3.73
401 402 1.686587 TGGCCAGGTATAGTGTCATCG 59.313 52.381 0.00 0.00 0.00 3.84
402 403 3.557898 CCATGGCCAGGTATAGTGTCATC 60.558 52.174 17.55 0.00 0.00 2.92
403 404 2.373169 CCATGGCCAGGTATAGTGTCAT 59.627 50.000 17.55 0.00 0.00 3.06
404 405 1.768275 CCATGGCCAGGTATAGTGTCA 59.232 52.381 17.55 0.00 0.00 3.58
405 406 1.072331 CCCATGGCCAGGTATAGTGTC 59.928 57.143 17.55 0.00 0.00 3.67
406 407 1.140312 CCCATGGCCAGGTATAGTGT 58.860 55.000 17.55 0.00 0.00 3.55
407 408 0.250901 GCCCATGGCCAGGTATAGTG 60.251 60.000 17.55 4.85 44.06 2.74
408 409 2.155065 GCCCATGGCCAGGTATAGT 58.845 57.895 17.55 0.00 44.06 2.12
436 437 2.855880 TTTATGGGTCGGGCCGTTCG 62.856 60.000 27.32 0.00 38.44 3.95
437 438 0.677414 TTTTATGGGTCGGGCCGTTC 60.677 55.000 27.32 19.28 38.44 3.95
438 439 0.251253 TTTTTATGGGTCGGGCCGTT 60.251 50.000 27.32 9.36 38.44 4.44
439 440 0.961857 GTTTTTATGGGTCGGGCCGT 60.962 55.000 27.32 8.74 38.44 5.68
440 441 1.659622 GGTTTTTATGGGTCGGGCCG 61.660 60.000 22.51 22.51 38.44 6.13
441 442 1.324740 GGGTTTTTATGGGTCGGGCC 61.325 60.000 0.00 0.00 0.00 5.80
442 443 1.659622 CGGGTTTTTATGGGTCGGGC 61.660 60.000 0.00 0.00 0.00 6.13
443 444 1.033202 CCGGGTTTTTATGGGTCGGG 61.033 60.000 0.00 0.00 33.27 5.14
444 445 1.659622 GCCGGGTTTTTATGGGTCGG 61.660 60.000 2.18 0.00 39.07 4.79
445 446 1.659622 GGCCGGGTTTTTATGGGTCG 61.660 60.000 2.18 0.00 0.00 4.79
446 447 1.324740 GGGCCGGGTTTTTATGGGTC 61.325 60.000 2.18 0.00 0.00 4.46
447 448 1.305465 GGGCCGGGTTTTTATGGGT 60.305 57.895 2.18 0.00 0.00 4.51
448 449 2.419739 CGGGCCGGGTTTTTATGGG 61.420 63.158 20.56 0.00 0.00 4.00
449 450 2.419739 CCGGGCCGGGTTTTTATGG 61.420 63.158 37.27 7.13 44.15 2.74
450 451 3.202467 CCGGGCCGGGTTTTTATG 58.798 61.111 37.27 7.97 44.15 1.90
469 470 4.278513 TGGGCAAGGTTGGGTCGG 62.279 66.667 0.00 0.00 0.00 4.79
470 471 2.983592 GTGGGCAAGGTTGGGTCG 60.984 66.667 0.00 0.00 0.00 4.79
471 472 1.903404 CTGTGGGCAAGGTTGGGTC 60.903 63.158 0.00 0.00 0.00 4.46
472 473 2.198426 CTGTGGGCAAGGTTGGGT 59.802 61.111 0.00 0.00 0.00 4.51
473 474 2.601367 CCTGTGGGCAAGGTTGGG 60.601 66.667 0.00 0.00 0.00 4.12
495 496 2.105806 CTCAAGATCTAGGCCCGGGC 62.106 65.000 38.57 38.57 41.06 6.13
496 497 0.760945 ACTCAAGATCTAGGCCCGGG 60.761 60.000 19.09 19.09 0.00 5.73
497 498 0.676736 GACTCAAGATCTAGGCCCGG 59.323 60.000 0.00 0.00 0.00 5.73
498 499 1.403814 TGACTCAAGATCTAGGCCCG 58.596 55.000 0.00 0.00 0.00 6.13
499 500 3.914426 TTTGACTCAAGATCTAGGCCC 57.086 47.619 0.00 0.00 0.00 5.80
500 501 4.813697 GTCATTTGACTCAAGATCTAGGCC 59.186 45.833 0.00 0.00 41.65 5.19
501 502 4.813697 GGTCATTTGACTCAAGATCTAGGC 59.186 45.833 10.32 0.00 44.20 3.93
502 503 5.046529 CGGTCATTTGACTCAAGATCTAGG 58.953 45.833 10.32 0.00 44.20 3.02
503 504 5.046529 CCGGTCATTTGACTCAAGATCTAG 58.953 45.833 10.32 0.00 44.20 2.43
504 505 4.466370 ACCGGTCATTTGACTCAAGATCTA 59.534 41.667 0.00 0.00 44.20 1.98
505 506 3.261897 ACCGGTCATTTGACTCAAGATCT 59.738 43.478 0.00 0.00 44.20 2.75
506 507 3.600388 ACCGGTCATTTGACTCAAGATC 58.400 45.455 0.00 0.00 44.20 2.75
507 508 3.600388 GACCGGTCATTTGACTCAAGAT 58.400 45.455 29.75 0.00 44.20 2.40
508 509 2.289444 GGACCGGTCATTTGACTCAAGA 60.289 50.000 34.40 0.00 44.20 3.02
509 510 2.076863 GGACCGGTCATTTGACTCAAG 58.923 52.381 34.40 0.80 44.20 3.02
510 511 1.606994 CGGACCGGTCATTTGACTCAA 60.607 52.381 34.40 0.00 44.20 3.02
511 512 0.037697 CGGACCGGTCATTTGACTCA 60.038 55.000 34.40 0.00 44.20 3.41
512 513 0.739813 CCGGACCGGTCATTTGACTC 60.740 60.000 34.40 14.40 44.20 3.36
513 514 1.295423 CCGGACCGGTCATTTGACT 59.705 57.895 34.40 0.00 44.20 3.41
514 515 3.884900 CCGGACCGGTCATTTGAC 58.115 61.111 34.40 15.86 42.73 3.18
525 526 4.785453 CCAAGCCAGAGCCGGACC 62.785 72.222 5.05 0.00 41.25 4.46
526 527 3.959991 GACCAAGCCAGAGCCGGAC 62.960 68.421 5.05 0.00 41.25 4.79
527 528 3.706373 GACCAAGCCAGAGCCGGA 61.706 66.667 5.05 0.00 41.25 5.14
528 529 4.785453 GGACCAAGCCAGAGCCGG 62.785 72.222 0.00 0.00 41.25 6.13
529 530 3.710722 AGGACCAAGCCAGAGCCG 61.711 66.667 0.00 0.00 41.25 5.52
530 531 1.919600 ATCAGGACCAAGCCAGAGCC 61.920 60.000 0.00 0.00 41.25 4.70
531 532 0.034670 AATCAGGACCAAGCCAGAGC 60.035 55.000 0.00 0.00 40.32 4.09
532 533 2.503895 AAATCAGGACCAAGCCAGAG 57.496 50.000 0.00 0.00 0.00 3.35
533 534 2.978156 AAAATCAGGACCAAGCCAGA 57.022 45.000 0.00 0.00 0.00 3.86
534 535 4.156739 GTCTAAAAATCAGGACCAAGCCAG 59.843 45.833 0.00 0.00 0.00 4.85
535 536 4.079253 GTCTAAAAATCAGGACCAAGCCA 58.921 43.478 0.00 0.00 0.00 4.75
536 537 3.444034 GGTCTAAAAATCAGGACCAAGCC 59.556 47.826 6.16 0.00 45.23 4.35
537 538 4.703645 GGTCTAAAAATCAGGACCAAGC 57.296 45.455 6.16 0.00 45.23 4.01
541 542 4.439968 CGTAGGGTCTAAAAATCAGGACC 58.560 47.826 0.00 0.00 45.18 4.46
588 589 0.671251 ATCAAAGCCCGACGCAAAAA 59.329 45.000 0.00 0.00 41.38 1.94
589 590 1.198178 GTATCAAAGCCCGACGCAAAA 59.802 47.619 0.00 0.00 41.38 2.44
590 591 0.800012 GTATCAAAGCCCGACGCAAA 59.200 50.000 0.00 0.00 41.38 3.68
591 592 1.355796 CGTATCAAAGCCCGACGCAA 61.356 55.000 0.00 0.00 41.38 4.85
592 593 1.807981 CGTATCAAAGCCCGACGCA 60.808 57.895 0.00 0.00 41.38 5.24
593 594 1.749609 GACGTATCAAAGCCCGACGC 61.750 60.000 0.00 0.00 37.02 5.19
594 595 1.143969 GGACGTATCAAAGCCCGACG 61.144 60.000 0.00 0.00 39.37 5.12
595 596 1.143969 CGGACGTATCAAAGCCCGAC 61.144 60.000 2.16 0.00 39.31 4.79
596 597 1.140161 CGGACGTATCAAAGCCCGA 59.860 57.895 2.16 0.00 39.31 5.14
597 598 1.881252 CCGGACGTATCAAAGCCCG 60.881 63.158 0.00 1.40 36.98 6.13
598 599 0.808847 GACCGGACGTATCAAAGCCC 60.809 60.000 9.46 0.00 0.00 5.19
599 600 0.175073 AGACCGGACGTATCAAAGCC 59.825 55.000 9.46 0.00 0.00 4.35
600 601 1.135199 TCAGACCGGACGTATCAAAGC 60.135 52.381 9.46 0.00 0.00 3.51
601 602 2.933495 TCAGACCGGACGTATCAAAG 57.067 50.000 9.46 0.00 0.00 2.77
602 603 2.673043 GCTTCAGACCGGACGTATCAAA 60.673 50.000 9.46 0.00 0.00 2.69
603 604 1.135199 GCTTCAGACCGGACGTATCAA 60.135 52.381 9.46 0.00 0.00 2.57
604 605 0.454600 GCTTCAGACCGGACGTATCA 59.545 55.000 9.46 0.00 0.00 2.15
605 606 0.248949 GGCTTCAGACCGGACGTATC 60.249 60.000 9.46 0.00 0.00 2.24
606 607 1.673808 GGGCTTCAGACCGGACGTAT 61.674 60.000 9.46 0.00 30.66 3.06
607 608 2.345760 GGGCTTCAGACCGGACGTA 61.346 63.158 9.46 0.00 30.66 3.57
608 609 3.692406 GGGCTTCAGACCGGACGT 61.692 66.667 9.46 0.00 30.66 4.34
628 629 1.418908 ATACCTTGCCATCCCTCGGG 61.419 60.000 0.00 0.00 0.00 5.14
629 630 1.276421 CTATACCTTGCCATCCCTCGG 59.724 57.143 0.00 0.00 0.00 4.63
630 631 2.248248 TCTATACCTTGCCATCCCTCG 58.752 52.381 0.00 0.00 0.00 4.63
631 632 3.054802 CCATCTATACCTTGCCATCCCTC 60.055 52.174 0.00 0.00 0.00 4.30
632 633 2.915604 CCATCTATACCTTGCCATCCCT 59.084 50.000 0.00 0.00 0.00 4.20
633 634 2.619074 GCCATCTATACCTTGCCATCCC 60.619 54.545 0.00 0.00 0.00 3.85
634 635 2.040278 TGCCATCTATACCTTGCCATCC 59.960 50.000 0.00 0.00 0.00 3.51
635 636 3.077359 GTGCCATCTATACCTTGCCATC 58.923 50.000 0.00 0.00 0.00 3.51
636 637 2.442878 TGTGCCATCTATACCTTGCCAT 59.557 45.455 0.00 0.00 0.00 4.40
637 638 1.843206 TGTGCCATCTATACCTTGCCA 59.157 47.619 0.00 0.00 0.00 4.92
638 639 2.638480 TGTGCCATCTATACCTTGCC 57.362 50.000 0.00 0.00 0.00 4.52
639 640 3.251729 CACATGTGCCATCTATACCTTGC 59.748 47.826 13.94 0.00 0.00 4.01
640 641 4.454678 ACACATGTGCCATCTATACCTTG 58.545 43.478 25.68 0.00 0.00 3.61
641 642 4.778213 ACACATGTGCCATCTATACCTT 57.222 40.909 25.68 0.00 0.00 3.50
642 643 4.454678 CAACACATGTGCCATCTATACCT 58.545 43.478 25.68 0.00 0.00 3.08
643 644 3.003689 GCAACACATGTGCCATCTATACC 59.996 47.826 25.68 0.00 0.00 2.73
644 645 4.214980 GCAACACATGTGCCATCTATAC 57.785 45.455 25.68 1.79 0.00 1.47
712 714 2.049248 GCAACACCAATGTGCCGG 60.049 61.111 0.00 0.00 46.86 6.13
764 766 1.078848 GCGGACAGAGCTTGTGGAT 60.079 57.895 6.31 0.00 41.05 3.41
816 820 9.727859 GTTATAAAACCTCTCTCCTTTTTCTCT 57.272 33.333 0.00 0.00 0.00 3.10
852 856 2.032426 CGTCGGCTAGGTTTTGTTTTGT 59.968 45.455 0.00 0.00 0.00 2.83
868 883 1.590792 GATAAACTCGCCCCGTCGG 60.591 63.158 3.60 3.60 0.00 4.79
1219 1234 4.436998 GAGGAGTGGGACGCACGG 62.437 72.222 16.07 0.00 44.14 4.94
1378 1394 4.316205 TCTAACAGAAACAGAAGCACGA 57.684 40.909 0.00 0.00 0.00 4.35
1379 1395 4.143030 CCATCTAACAGAAACAGAAGCACG 60.143 45.833 0.00 0.00 0.00 5.34
1380 1396 4.757149 ACCATCTAACAGAAACAGAAGCAC 59.243 41.667 0.00 0.00 0.00 4.40
1381 1397 4.756642 CACCATCTAACAGAAACAGAAGCA 59.243 41.667 0.00 0.00 0.00 3.91
1382 1398 4.154918 CCACCATCTAACAGAAACAGAAGC 59.845 45.833 0.00 0.00 0.00 3.86
1383 1399 4.697352 CCCACCATCTAACAGAAACAGAAG 59.303 45.833 0.00 0.00 0.00 2.85
1384 1400 4.506625 CCCCACCATCTAACAGAAACAGAA 60.507 45.833 0.00 0.00 0.00 3.02
1406 1429 7.823745 AATCAATATGACAATGTCCTAACCC 57.176 36.000 11.24 0.00 0.00 4.11
1649 1672 3.557686 GCAGCACCCAAGGAATTTTGAAT 60.558 43.478 0.00 0.00 0.00 2.57
1777 1802 6.363577 TCACTAACAAAAAGAGCACTTCAG 57.636 37.500 0.00 0.00 35.05 3.02
1885 1910 1.954927 CATAGAGAAAACGAGGGGGC 58.045 55.000 0.00 0.00 0.00 5.80
2037 2065 2.973879 GCACGCAAGCTTAAGTTTCTTC 59.026 45.455 0.00 0.00 45.62 2.87
2219 2247 4.851639 AAACCTCTAGGAATCATGTGCT 57.148 40.909 2.23 0.00 38.94 4.40
2257 2285 1.046204 GTATTTCCGGACGGAGGGAT 58.954 55.000 13.64 11.41 46.06 3.85
2258 2286 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2259 2287 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2260 2288 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2261 2289 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2262 2290 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2263 2291 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
2264 2292 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
2265 2293 6.806388 TTTTTAGGACAAGTATTTCCGGAC 57.194 37.500 1.83 0.00 36.95 4.79
2266 2294 6.376018 CCATTTTTAGGACAAGTATTTCCGGA 59.624 38.462 0.00 0.00 36.95 5.14
2267 2295 6.405397 CCCATTTTTAGGACAAGTATTTCCGG 60.405 42.308 0.00 0.00 36.95 5.14
2268 2296 6.152154 ACCCATTTTTAGGACAAGTATTTCCG 59.848 38.462 0.00 0.00 36.95 4.30
2269 2297 7.476540 ACCCATTTTTAGGACAAGTATTTCC 57.523 36.000 0.00 0.00 0.00 3.13
2270 2298 9.016438 TGTACCCATTTTTAGGACAAGTATTTC 57.984 33.333 0.00 0.00 0.00 2.17
2271 2299 8.943594 TGTACCCATTTTTAGGACAAGTATTT 57.056 30.769 0.00 0.00 0.00 1.40
2272 2300 8.943594 TTGTACCCATTTTTAGGACAAGTATT 57.056 30.769 0.00 0.00 0.00 1.89
2273 2301 8.943594 TTTGTACCCATTTTTAGGACAAGTAT 57.056 30.769 0.00 0.00 30.36 2.12
2274 2302 8.798402 CATTTGTACCCATTTTTAGGACAAGTA 58.202 33.333 0.00 0.00 30.36 2.24
2275 2303 7.256154 CCATTTGTACCCATTTTTAGGACAAGT 60.256 37.037 0.00 0.00 30.36 3.16
2276 2304 7.039363 TCCATTTGTACCCATTTTTAGGACAAG 60.039 37.037 0.00 0.00 30.36 3.16
2277 2305 6.782988 TCCATTTGTACCCATTTTTAGGACAA 59.217 34.615 0.00 0.00 0.00 3.18
2278 2306 6.315714 TCCATTTGTACCCATTTTTAGGACA 58.684 36.000 0.00 0.00 0.00 4.02
2279 2307 6.844097 TCCATTTGTACCCATTTTTAGGAC 57.156 37.500 0.00 0.00 0.00 3.85
2280 2308 6.957020 ACATCCATTTGTACCCATTTTTAGGA 59.043 34.615 0.00 0.00 0.00 2.94
2281 2309 7.181569 ACATCCATTTGTACCCATTTTTAGG 57.818 36.000 0.00 0.00 0.00 2.69
2282 2310 9.965824 GATACATCCATTTGTACCCATTTTTAG 57.034 33.333 0.00 0.00 35.04 1.85
2283 2311 9.707957 AGATACATCCATTTGTACCCATTTTTA 57.292 29.630 0.00 0.00 35.04 1.52
2284 2312 8.608185 AGATACATCCATTTGTACCCATTTTT 57.392 30.769 0.00 0.00 35.04 1.94
2285 2313 9.354673 CTAGATACATCCATTTGTACCCATTTT 57.645 33.333 0.00 0.00 35.04 1.82
2286 2314 8.723365 TCTAGATACATCCATTTGTACCCATTT 58.277 33.333 0.00 0.00 35.04 2.32
2287 2315 8.275187 TCTAGATACATCCATTTGTACCCATT 57.725 34.615 0.00 0.00 35.04 3.16
2288 2316 7.872061 TCTAGATACATCCATTTGTACCCAT 57.128 36.000 0.00 0.00 35.04 4.00
2289 2317 7.347222 AGTTCTAGATACATCCATTTGTACCCA 59.653 37.037 0.00 0.00 35.04 4.51
2290 2318 7.736893 AGTTCTAGATACATCCATTTGTACCC 58.263 38.462 0.00 0.00 35.04 3.69
2336 2364 4.096382 CCGGAAATACTTGTCCAAGGAATG 59.904 45.833 11.45 0.00 42.53 2.67
2337 2365 4.018779 TCCGGAAATACTTGTCCAAGGAAT 60.019 41.667 0.00 2.40 42.53 3.01
2338 2366 3.328343 TCCGGAAATACTTGTCCAAGGAA 59.672 43.478 0.00 0.16 42.53 3.36
2339 2367 2.907696 TCCGGAAATACTTGTCCAAGGA 59.092 45.455 0.00 3.13 42.53 3.36
2340 2368 3.007635 GTCCGGAAATACTTGTCCAAGG 58.992 50.000 5.23 0.00 42.53 3.61
2341 2369 2.671396 CGTCCGGAAATACTTGTCCAAG 59.329 50.000 5.23 5.51 43.79 3.61
2342 2370 2.613474 CCGTCCGGAAATACTTGTCCAA 60.613 50.000 5.23 0.00 37.50 3.53
2343 2371 1.066716 CCGTCCGGAAATACTTGTCCA 60.067 52.381 5.23 0.00 37.50 4.02
2344 2372 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2345 2373 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2346 2374 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2347 2375 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2348 2376 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2349 2377 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2350 2378 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2351 2379 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2352 2380 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2353 2381 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2354 2382 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2355 2383 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
2356 2384 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
2357 2385 1.978454 AATACTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
2358 2386 2.223994 GCAAATACTACTCCCTCCGTCC 60.224 54.545 0.00 0.00 0.00 4.79
2359 2387 2.429610 TGCAAATACTACTCCCTCCGTC 59.570 50.000 0.00 0.00 0.00 4.79
2360 2388 2.431057 CTGCAAATACTACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
2361 2389 2.803492 GCTGCAAATACTACTCCCTCCG 60.803 54.545 0.00 0.00 0.00 4.63
2362 2390 2.170607 TGCTGCAAATACTACTCCCTCC 59.829 50.000 0.00 0.00 0.00 4.30
2363 2391 3.543680 TGCTGCAAATACTACTCCCTC 57.456 47.619 0.00 0.00 0.00 4.30
2364 2392 3.009033 TGTTGCTGCAAATACTACTCCCT 59.991 43.478 17.80 0.00 0.00 4.20
2365 2393 3.343617 TGTTGCTGCAAATACTACTCCC 58.656 45.455 17.80 0.99 0.00 4.30
2366 2394 3.181506 GCTGTTGCTGCAAATACTACTCC 60.182 47.826 17.80 1.75 36.03 3.85
2367 2395 3.181506 GGCTGTTGCTGCAAATACTACTC 60.182 47.826 17.80 2.50 39.59 2.59
2368 2396 2.749621 GGCTGTTGCTGCAAATACTACT 59.250 45.455 17.80 0.00 39.59 2.57
2369 2397 2.749621 AGGCTGTTGCTGCAAATACTAC 59.250 45.455 17.80 4.72 39.59 2.73
2370 2398 3.071874 AGGCTGTTGCTGCAAATACTA 57.928 42.857 17.80 0.93 39.59 1.82
2371 2399 1.915141 AGGCTGTTGCTGCAAATACT 58.085 45.000 17.80 10.10 39.59 2.12
3303 3334 4.889409 GCAAAGAATTCATACCCATCCTCA 59.111 41.667 8.44 0.00 0.00 3.86
3480 3511 6.095160 AGGAAAGAGCTTCATCATTTCACATC 59.905 38.462 0.00 0.00 35.55 3.06
3690 3722 8.028652 TGTATTCCAGTTCCATGTGATATACA 57.971 34.615 0.00 0.00 44.87 2.29
3846 3878 7.041721 TCATCACTCATGATACAAACTACCAC 58.958 38.462 0.00 0.00 44.13 4.16
4096 4128 1.094785 TCTGCCTTCGCTAAATTGGC 58.905 50.000 0.00 0.00 43.49 4.52
4255 4290 9.907229 AATGTCTCGAGTATCATATGTAGGATA 57.093 33.333 13.13 0.00 33.17 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.