Multiple sequence alignment - TraesCS4D01G211100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G211100 chr4D 100.000 4198 0 0 1 4198 363660647 363664844 0.000000e+00 7753.0
1 TraesCS4D01G211100 chr4B 91.798 2341 66 39 889 3201 449014246 449016488 0.000000e+00 3144.0
2 TraesCS4D01G211100 chr4B 90.427 867 38 13 3 867 449013349 449014172 0.000000e+00 1099.0
3 TraesCS4D01G211100 chr4B 93.072 332 16 3 3394 3718 449016888 449017219 2.940000e-131 479.0
4 TraesCS4D01G211100 chr4B 92.378 328 18 4 3715 4040 449017246 449017568 1.060000e-125 460.0
5 TraesCS4D01G211100 chr4B 92.754 138 8 1 3233 3370 449016481 449016616 9.210000e-47 198.0
6 TraesCS4D01G211100 chr4A 94.325 1586 67 16 1677 3253 101758585 101757014 0.000000e+00 2409.0
7 TraesCS4D01G211100 chr4A 85.039 889 51 24 10 870 101760124 101759290 0.000000e+00 830.0
8 TraesCS4D01G211100 chr4A 91.014 345 17 9 889 1228 101759210 101758875 1.780000e-123 453.0
9 TraesCS4D01G211100 chr4A 87.464 351 24 10 1341 1677 101758854 101758510 1.830000e-103 387.0
10 TraesCS4D01G211100 chr3B 86.957 115 15 0 1077 1191 623149141 623149255 3.410000e-26 130.0
11 TraesCS4D01G211100 chr3A 85.484 124 16 2 1077 1200 611701037 611701158 1.230000e-25 128.0
12 TraesCS4D01G211100 chr3D 86.087 115 16 0 1077 1191 469153488 469153602 1.580000e-24 124.0
13 TraesCS4D01G211100 chr7D 89.655 58 5 1 1520 1576 6589659 6589716 5.820000e-09 73.1
14 TraesCS4D01G211100 chr7A 87.931 58 6 1 1520 1576 7672328 7672385 2.710000e-07 67.6
15 TraesCS4D01G211100 chr7A 100.000 29 0 0 1875 1903 729645357 729645385 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G211100 chr4D 363660647 363664844 4197 False 7753.00 7753 100.0000 1 4198 1 chr4D.!!$F1 4197
1 TraesCS4D01G211100 chr4B 449013349 449017568 4219 False 1076.00 3144 92.0858 3 4040 5 chr4B.!!$F1 4037
2 TraesCS4D01G211100 chr4A 101757014 101760124 3110 True 1019.75 2409 89.4605 10 3253 4 chr4A.!!$R1 3243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 700 0.180642 CACCTCTGCTGGCATCTCAT 59.819 55.0 0.0 0.0 0.0 2.90 F
1453 1590 0.681733 TCCTCACAGCAACAGTCCTC 59.318 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 1736 1.135972 CGCTGAACAATTGAAGTCCCG 60.136 52.381 13.59 8.01 0.0 5.14 R
3316 3489 0.162507 CAGAACTGCAGAAGAACGCG 59.837 55.000 23.35 3.53 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.032609 CGCCACGCTGATCGATCC 61.033 66.667 22.31 7.25 41.67 3.36
46 47 0.396556 TGATCGATCCCGTCCCTTGA 60.397 55.000 22.31 0.00 37.05 3.02
54 55 1.002134 CCGTCCCTTGATGTGGCTT 60.002 57.895 0.00 0.00 0.00 4.35
55 56 1.026718 CCGTCCCTTGATGTGGCTTC 61.027 60.000 0.00 0.00 0.00 3.86
56 57 1.026718 CGTCCCTTGATGTGGCTTCC 61.027 60.000 0.00 0.00 0.00 3.46
57 58 1.026718 GTCCCTTGATGTGGCTTCCG 61.027 60.000 0.00 0.00 0.00 4.30
58 59 2.409870 CCCTTGATGTGGCTTCCGC 61.410 63.158 0.00 0.00 34.12 5.54
239 260 1.746615 CCCCCGCTGTTCATCACTG 60.747 63.158 0.00 0.00 0.00 3.66
325 346 3.041940 GGTTGCGAGACCACCACG 61.042 66.667 3.07 0.00 39.57 4.94
359 386 2.800581 CGTCTCGTCTCCGTCTCCG 61.801 68.421 0.00 0.00 35.01 4.63
363 390 1.422950 CTCGTCTCCGTCTCCGTCTC 61.423 65.000 0.00 0.00 35.01 3.36
364 391 2.462782 CGTCTCCGTCTCCGTCTCC 61.463 68.421 0.00 0.00 0.00 3.71
365 392 2.125229 TCTCCGTCTCCGTCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
366 393 3.878519 CTCCGTCTCCGTCTCCGC 61.879 72.222 0.00 0.00 0.00 5.54
487 514 3.249917 CTCTTTTTGTGTTTTGTGCCGT 58.750 40.909 0.00 0.00 0.00 5.68
573 600 1.112113 ATGCGTCCGGAGAACTACAT 58.888 50.000 3.06 0.00 0.00 2.29
580 607 4.091509 CGTCCGGAGAACTACATTTTTCAG 59.908 45.833 3.06 0.00 0.00 3.02
594 621 3.921119 TTTTCAGCAGCACATAGGTTG 57.079 42.857 0.00 0.00 0.00 3.77
595 622 2.857186 TTCAGCAGCACATAGGTTGA 57.143 45.000 0.00 0.00 0.00 3.18
596 623 3.354948 TTCAGCAGCACATAGGTTGAT 57.645 42.857 0.00 0.00 0.00 2.57
597 624 4.486125 TTCAGCAGCACATAGGTTGATA 57.514 40.909 0.00 0.00 0.00 2.15
648 686 4.512914 GCCCCTCCATGCCACCTC 62.513 72.222 0.00 0.00 0.00 3.85
649 687 2.693864 CCCCTCCATGCCACCTCT 60.694 66.667 0.00 0.00 0.00 3.69
650 688 2.593978 CCCTCCATGCCACCTCTG 59.406 66.667 0.00 0.00 0.00 3.35
651 689 2.124403 CCTCCATGCCACCTCTGC 60.124 66.667 0.00 0.00 0.00 4.26
652 690 2.677289 CCTCCATGCCACCTCTGCT 61.677 63.158 0.00 0.00 0.00 4.24
653 691 1.451567 CTCCATGCCACCTCTGCTG 60.452 63.158 0.00 0.00 0.00 4.41
654 692 2.439701 CCATGCCACCTCTGCTGG 60.440 66.667 0.00 0.00 0.00 4.85
659 697 2.996395 CCACCTCTGCTGGCATCT 59.004 61.111 0.00 0.00 0.00 2.90
660 698 1.153208 CCACCTCTGCTGGCATCTC 60.153 63.158 0.00 0.00 0.00 2.75
661 699 1.600638 CACCTCTGCTGGCATCTCA 59.399 57.895 0.00 0.00 0.00 3.27
662 700 0.180642 CACCTCTGCTGGCATCTCAT 59.819 55.000 0.00 0.00 0.00 2.90
747 787 2.948315 GCCTGCTTCCTTAAATCTGAGG 59.052 50.000 0.00 0.00 0.00 3.86
748 788 3.549794 CCTGCTTCCTTAAATCTGAGGG 58.450 50.000 0.00 0.00 33.73 4.30
749 789 3.549794 CTGCTTCCTTAAATCTGAGGGG 58.450 50.000 0.00 0.00 33.73 4.79
750 790 2.242196 TGCTTCCTTAAATCTGAGGGGG 59.758 50.000 0.00 0.00 33.73 5.40
769 809 3.970205 GGAAATCCCGTCTCCCAAA 57.030 52.632 0.00 0.00 0.00 3.28
776 816 2.342279 CGTCTCCCAAACGAGGCA 59.658 61.111 0.00 0.00 42.62 4.75
813 854 4.381718 GCGTTACTAGATCAGGTTGTCCTT 60.382 45.833 0.00 0.00 43.07 3.36
815 856 5.662456 GTTACTAGATCAGGTTGTCCTTCC 58.338 45.833 0.00 0.00 43.07 3.46
876 945 6.509677 GCTTTCGTATGTACTATGTTCTTGCC 60.510 42.308 0.00 0.00 0.00 4.52
963 1077 5.355596 AGTGTCTTGTTCTGAAGTCTGAAG 58.644 41.667 1.30 0.00 35.07 3.02
964 1078 5.105146 AGTGTCTTGTTCTGAAGTCTGAAGT 60.105 40.000 1.30 0.00 35.07 3.01
965 1079 5.233263 GTGTCTTGTTCTGAAGTCTGAAGTC 59.767 44.000 1.30 0.00 35.07 3.01
966 1080 5.127845 TGTCTTGTTCTGAAGTCTGAAGTCT 59.872 40.000 1.30 0.00 35.07 3.24
967 1081 5.461737 GTCTTGTTCTGAAGTCTGAAGTCTG 59.538 44.000 1.30 0.00 35.07 3.51
968 1082 5.360999 TCTTGTTCTGAAGTCTGAAGTCTGA 59.639 40.000 1.30 0.00 35.07 3.27
969 1083 5.598416 TGTTCTGAAGTCTGAAGTCTGAA 57.402 39.130 1.30 6.92 35.07 3.02
970 1084 5.352284 TGTTCTGAAGTCTGAAGTCTGAAC 58.648 41.667 21.74 21.74 44.23 3.18
971 1085 5.127845 TGTTCTGAAGTCTGAAGTCTGAACT 59.872 40.000 25.07 1.18 44.26 3.01
988 1102 2.361643 ACTGTATACTCCGACCCTCC 57.638 55.000 4.17 0.00 0.00 4.30
1049 1179 1.102809 TGCTGCAGTTTCACAGGGTG 61.103 55.000 16.64 0.00 34.38 4.61
1050 1180 1.103398 GCTGCAGTTTCACAGGGTGT 61.103 55.000 16.64 0.00 34.79 4.16
1058 1188 4.481195 CACAGGGTGTGGAGGTTG 57.519 61.111 0.00 0.00 44.27 3.77
1059 1189 1.531748 CACAGGGTGTGGAGGTTGT 59.468 57.895 0.00 0.00 44.27 3.32
1283 1418 2.125350 CAAGGCACGAGGAGAGGC 60.125 66.667 0.00 0.00 36.29 4.70
1325 1461 4.022849 AGTGCAAGCAAAAGGAACAGTATC 60.023 41.667 0.00 0.00 0.00 2.24
1336 1472 8.783093 CAAAAGGAACAGTATCATGTAGTTCAA 58.217 33.333 14.94 0.00 40.11 2.69
1358 1494 7.402054 TCAATCACCTGATTATTTACCTGTGT 58.598 34.615 0.14 0.00 42.41 3.72
1382 1519 3.013921 TGACAACCTGTGGAGTTTGTTC 58.986 45.455 0.00 0.00 0.00 3.18
1451 1588 2.079925 GATTCCTCACAGCAACAGTCC 58.920 52.381 0.00 0.00 0.00 3.85
1453 1590 0.681733 TCCTCACAGCAACAGTCCTC 59.318 55.000 0.00 0.00 0.00 3.71
1493 1630 6.716628 ACCATCTGTGTCTCAAATAATTGTGT 59.283 34.615 0.00 0.00 37.79 3.72
1570 1711 5.045213 TCCCTGTCCTGAGCAAATTAACATA 60.045 40.000 0.00 0.00 0.00 2.29
1623 1773 8.039603 TGTTCAGCGTATCTTGTGATTTTTAT 57.960 30.769 0.00 0.00 34.32 1.40
1624 1774 8.511321 TGTTCAGCGTATCTTGTGATTTTTATT 58.489 29.630 0.00 0.00 34.32 1.40
1651 1801 1.891919 GCAGTGCCTTCGTCACCAA 60.892 57.895 2.85 0.00 35.14 3.67
1666 1816 1.411977 CACCAAGATCGAGGCTCTGAT 59.588 52.381 17.57 17.57 0.00 2.90
1678 1828 4.262808 CGAGGCTCTGATAGATTTGGGAAT 60.263 45.833 13.50 0.00 0.00 3.01
1680 1830 5.383476 AGGCTCTGATAGATTTGGGAATTG 58.617 41.667 0.00 0.00 0.00 2.32
1681 1831 5.103771 AGGCTCTGATAGATTTGGGAATTGT 60.104 40.000 0.00 0.00 0.00 2.71
1682 1832 5.595952 GGCTCTGATAGATTTGGGAATTGTT 59.404 40.000 0.00 0.00 0.00 2.83
1683 1833 6.238869 GGCTCTGATAGATTTGGGAATTGTTC 60.239 42.308 0.00 0.00 0.00 3.18
1684 1834 6.319658 GCTCTGATAGATTTGGGAATTGTTCA 59.680 38.462 0.00 0.00 0.00 3.18
1685 1835 7.468357 GCTCTGATAGATTTGGGAATTGTTCAG 60.468 40.741 0.00 0.00 32.09 3.02
1686 1836 7.405292 TCTGATAGATTTGGGAATTGTTCAGT 58.595 34.615 0.00 0.00 32.38 3.41
1687 1837 7.337689 TCTGATAGATTTGGGAATTGTTCAGTG 59.662 37.037 0.00 0.00 32.38 3.66
1688 1838 6.947733 TGATAGATTTGGGAATTGTTCAGTGT 59.052 34.615 0.00 0.00 0.00 3.55
1689 1839 8.106462 TGATAGATTTGGGAATTGTTCAGTGTA 58.894 33.333 0.00 0.00 0.00 2.90
1690 1840 9.125026 GATAGATTTGGGAATTGTTCAGTGTAT 57.875 33.333 0.00 0.00 0.00 2.29
1691 1841 7.161773 AGATTTGGGAATTGTTCAGTGTATG 57.838 36.000 0.00 0.00 0.00 2.39
1692 1842 6.721208 AGATTTGGGAATTGTTCAGTGTATGT 59.279 34.615 0.00 0.00 0.00 2.29
1693 1843 6.723298 TTTGGGAATTGTTCAGTGTATGTT 57.277 33.333 0.00 0.00 0.00 2.71
1694 1844 5.703978 TGGGAATTGTTCAGTGTATGTTG 57.296 39.130 0.00 0.00 0.00 3.33
1695 1845 5.136828 TGGGAATTGTTCAGTGTATGTTGT 58.863 37.500 0.00 0.00 0.00 3.32
1696 1846 5.009510 TGGGAATTGTTCAGTGTATGTTGTG 59.990 40.000 0.00 0.00 0.00 3.33
1697 1847 5.240623 GGGAATTGTTCAGTGTATGTTGTGA 59.759 40.000 0.00 0.00 0.00 3.58
1698 1848 6.071952 GGGAATTGTTCAGTGTATGTTGTGAT 60.072 38.462 0.00 0.00 0.00 3.06
1699 1849 7.370383 GGAATTGTTCAGTGTATGTTGTGATT 58.630 34.615 0.00 0.00 0.00 2.57
1700 1850 8.511321 GGAATTGTTCAGTGTATGTTGTGATTA 58.489 33.333 0.00 0.00 0.00 1.75
1701 1851 9.891828 GAATTGTTCAGTGTATGTTGTGATTAA 57.108 29.630 0.00 0.00 0.00 1.40
1702 1852 9.677567 AATTGTTCAGTGTATGTTGTGATTAAC 57.322 29.630 0.00 0.00 0.00 2.01
2009 2160 2.504244 GACAAGCTCGACGACGGG 60.504 66.667 7.55 4.86 43.59 5.28
2211 2366 4.119862 GGTATGCTGAGAAATGTCGCTAA 58.880 43.478 0.00 0.00 0.00 3.09
2214 2369 4.864916 TGCTGAGAAATGTCGCTAATTC 57.135 40.909 0.00 0.00 0.00 2.17
2510 2665 1.442148 GGACTACATCACGGGGCTC 59.558 63.158 0.00 0.00 0.00 4.70
3027 3189 1.801178 GTCTGCAAGTGTAACCAGAGC 59.199 52.381 0.00 0.00 34.17 4.09
3033 3195 0.603569 AGTGTAACCAGAGCTGTCCG 59.396 55.000 0.00 0.00 37.80 4.79
3197 3359 7.961326 ATGGGAATAAAGCATCAGTTTTACT 57.039 32.000 0.00 0.00 34.02 2.24
3198 3360 9.474313 AATGGGAATAAAGCATCAGTTTTACTA 57.526 29.630 0.00 0.00 34.02 1.82
3199 3361 8.506168 TGGGAATAAAGCATCAGTTTTACTAG 57.494 34.615 0.00 0.00 34.02 2.57
3200 3362 8.107095 TGGGAATAAAGCATCAGTTTTACTAGT 58.893 33.333 0.00 0.00 34.02 2.57
3201 3363 9.609346 GGGAATAAAGCATCAGTTTTACTAGTA 57.391 33.333 0.00 0.00 34.02 1.82
3223 3396 3.569701 ACCATTTCTGTGTGATGTGTTCC 59.430 43.478 0.00 0.00 0.00 3.62
3231 3404 3.005554 GTGTGATGTGTTCCTCCATGAG 58.994 50.000 0.00 0.00 0.00 2.90
3233 3406 3.072915 TGTGATGTGTTCCTCCATGAGTT 59.927 43.478 0.00 0.00 0.00 3.01
3333 3506 1.222115 ACCGCGTTCTTCTGCAGTTC 61.222 55.000 14.67 0.41 0.00 3.01
3340 3513 3.997021 CGTTCTTCTGCAGTTCTGGTTAT 59.003 43.478 14.67 0.00 0.00 1.89
3352 3525 4.016444 GTTCTGGTTATGGGAGCATTTCA 58.984 43.478 0.00 0.00 0.00 2.69
3372 3760 8.531146 CATTTCATTTTCCAGGTTTGGTATACT 58.469 33.333 2.25 0.00 45.26 2.12
3385 3773 1.470098 GGTATACTGTCCACGTCACGT 59.530 52.381 0.00 0.00 42.36 4.49
3398 3819 3.622826 CACGTGGACCGGGGACTT 61.623 66.667 7.95 0.00 42.24 3.01
3412 3833 0.958822 GGACTTGGCCACGTTTTCAT 59.041 50.000 17.04 0.00 0.00 2.57
3415 3836 2.550606 GACTTGGCCACGTTTTCATGTA 59.449 45.455 17.04 0.00 0.00 2.29
3429 3850 1.167851 CATGTAGGTGGCCAGTTGTG 58.832 55.000 5.11 0.00 0.00 3.33
3521 3943 1.919956 GCAGTCTGTGATGGTGCAGC 61.920 60.000 9.47 9.47 34.18 5.25
3533 3955 1.493311 GTGCAGCGCAAGTCAGTAC 59.507 57.895 11.47 0.00 41.47 2.73
3534 3956 1.068921 TGCAGCGCAAGTCAGTACA 59.931 52.632 11.47 0.00 34.76 2.90
3572 4000 3.043586 CACCGATCGTTAGCTGTATGAC 58.956 50.000 15.09 0.00 0.00 3.06
3614 4042 5.123820 CCGGAGCATAGAAAAATTCAGAACA 59.876 40.000 0.00 0.00 0.00 3.18
3660 4088 2.061740 ACTTTAACCAGAGTCGCGTC 57.938 50.000 5.77 0.00 0.00 5.19
3662 4090 2.816087 ACTTTAACCAGAGTCGCGTCTA 59.184 45.455 5.70 0.00 0.00 2.59
3684 4112 3.181434 ACTTTAGTTTCTGGATGGTGGCA 60.181 43.478 0.00 0.00 0.00 4.92
3696 4124 2.353610 GGTGGCAAGGCTTCCATGG 61.354 63.158 17.48 4.97 34.47 3.66
3703 4131 4.242602 GGCTTCCATGGCCTGTAC 57.757 61.111 6.96 0.00 45.57 2.90
3713 4141 7.201911 GCTTCCATGGCCTGTACTATAATTTTT 60.202 37.037 6.96 0.00 0.00 1.94
3738 4196 1.336755 ACCTGCGCTTTAAACAAGTGG 59.663 47.619 9.73 0.00 0.00 4.00
3740 4198 2.604614 CCTGCGCTTTAAACAAGTGGTC 60.605 50.000 9.73 0.00 0.00 4.02
3791 4250 3.730761 GCGACAGCAGGCACTTGG 61.731 66.667 0.00 0.00 44.35 3.61
3805 4264 3.988819 GCACTTGGCCTTAACAAATGAA 58.011 40.909 3.32 0.00 36.11 2.57
3806 4265 4.568956 GCACTTGGCCTTAACAAATGAAT 58.431 39.130 3.32 0.00 36.11 2.57
3807 4266 4.389687 GCACTTGGCCTTAACAAATGAATG 59.610 41.667 3.32 0.00 36.11 2.67
3808 4267 5.782047 CACTTGGCCTTAACAAATGAATGA 58.218 37.500 3.32 0.00 27.22 2.57
3818 4277 8.080417 CCTTAACAAATGAATGATAGCTGGATG 58.920 37.037 0.00 0.00 0.00 3.51
3832 4291 2.930887 GCTGGATGCAGAAGTTGACGTA 60.931 50.000 19.59 0.00 42.31 3.57
3841 4300 4.468643 CAGAAGTTGACGTACTGAGAGAC 58.531 47.826 0.00 0.00 0.00 3.36
3849 4308 2.026169 ACGTACTGAGAGACTCCATCCA 60.026 50.000 0.00 0.00 0.00 3.41
3876 4335 0.324738 ACGGGAGAGGAGCAAGATCA 60.325 55.000 0.00 0.00 0.00 2.92
3880 4339 2.025155 GGAGAGGAGCAAGATCACGTA 58.975 52.381 0.00 0.00 0.00 3.57
3886 4345 0.530744 AGCAAGATCACGTAAGCCGA 59.469 50.000 0.00 0.00 45.62 5.54
3944 4403 0.951558 GCTTTCAGGGTTGAGCGAAA 59.048 50.000 0.00 0.00 34.15 3.46
3957 4416 1.535896 GAGCGAAAAGGACCTTTCACC 59.464 52.381 19.82 11.01 35.43 4.02
3967 4426 5.125367 AGGACCTTTCACCTAAACAAACT 57.875 39.130 0.00 0.00 34.47 2.66
4024 4483 0.371645 CTTCTCATTGGCGAACGCTC 59.628 55.000 18.14 9.44 41.60 5.03
4026 4485 0.320334 TCTCATTGGCGAACGCTCAA 60.320 50.000 18.14 18.55 41.60 3.02
4029 4488 1.003839 ATTGGCGAACGCTCAAGGA 60.004 52.632 18.14 2.03 41.60 3.36
4030 4489 1.021390 ATTGGCGAACGCTCAAGGAG 61.021 55.000 18.14 0.00 41.60 3.69
4031 4490 2.094757 TTGGCGAACGCTCAAGGAGA 62.095 55.000 18.14 0.00 41.60 3.71
4032 4491 2.095252 GGCGAACGCTCAAGGAGAC 61.095 63.158 18.14 0.00 41.60 3.36
4033 4492 2.437343 GCGAACGCTCAAGGAGACG 61.437 63.158 11.97 3.38 38.26 4.18
4036 4495 1.061485 GAACGCTCAAGGAGACGAAC 58.939 55.000 13.90 6.41 34.90 3.95
4037 4496 0.319641 AACGCTCAAGGAGACGAACC 60.320 55.000 13.90 0.00 34.90 3.62
4041 4500 2.227089 CTCAAGGAGACGAACCCCCG 62.227 65.000 0.00 0.00 0.00 5.73
4042 4501 2.118951 AAGGAGACGAACCCCCGA 59.881 61.111 0.00 0.00 0.00 5.14
4043 4502 1.305887 AAGGAGACGAACCCCCGAT 60.306 57.895 0.00 0.00 0.00 4.18
4044 4503 1.328430 AAGGAGACGAACCCCCGATC 61.328 60.000 0.00 0.00 0.00 3.69
4045 4504 2.794028 GGAGACGAACCCCCGATCC 61.794 68.421 0.00 0.00 34.12 3.36
4046 4505 3.135056 GAGACGAACCCCCGATCCG 62.135 68.421 0.00 0.00 0.00 4.18
4056 4515 3.130227 CCGATCCGGGGAGAAGAC 58.870 66.667 0.00 0.00 44.15 3.01
4057 4516 2.722487 CGATCCGGGGAGAAGACG 59.278 66.667 0.00 0.00 0.00 4.18
4058 4517 1.822613 CGATCCGGGGAGAAGACGA 60.823 63.158 0.00 0.00 0.00 4.20
4059 4518 1.173444 CGATCCGGGGAGAAGACGAT 61.173 60.000 0.00 0.00 0.00 3.73
4060 4519 1.041437 GATCCGGGGAGAAGACGATT 58.959 55.000 0.00 0.00 0.00 3.34
4061 4520 1.413077 GATCCGGGGAGAAGACGATTT 59.587 52.381 0.00 0.00 0.00 2.17
4062 4521 0.822164 TCCGGGGAGAAGACGATTTC 59.178 55.000 0.00 0.00 0.00 2.17
4063 4522 0.535335 CCGGGGAGAAGACGATTTCA 59.465 55.000 0.00 0.00 0.00 2.69
4064 4523 1.139058 CCGGGGAGAAGACGATTTCAT 59.861 52.381 0.00 0.00 0.00 2.57
4065 4524 2.420129 CCGGGGAGAAGACGATTTCATT 60.420 50.000 0.00 0.00 0.00 2.57
4066 4525 3.270877 CGGGGAGAAGACGATTTCATTT 58.729 45.455 0.00 0.00 0.00 2.32
4067 4526 3.689649 CGGGGAGAAGACGATTTCATTTT 59.310 43.478 0.00 0.00 0.00 1.82
4068 4527 4.873827 CGGGGAGAAGACGATTTCATTTTA 59.126 41.667 0.00 0.00 0.00 1.52
4069 4528 5.006746 CGGGGAGAAGACGATTTCATTTTAG 59.993 44.000 0.00 0.00 0.00 1.85
4070 4529 5.220873 GGGGAGAAGACGATTTCATTTTAGC 60.221 44.000 0.00 0.00 0.00 3.09
4071 4530 5.586643 GGGAGAAGACGATTTCATTTTAGCT 59.413 40.000 0.00 0.00 0.00 3.32
4072 4531 6.457528 GGGAGAAGACGATTTCATTTTAGCTG 60.458 42.308 0.00 0.00 0.00 4.24
4073 4532 6.092807 GGAGAAGACGATTTCATTTTAGCTGT 59.907 38.462 0.00 0.00 0.00 4.40
4074 4533 7.361286 GGAGAAGACGATTTCATTTTAGCTGTT 60.361 37.037 0.00 0.00 0.00 3.16
4075 4534 8.547967 AGAAGACGATTTCATTTTAGCTGTTA 57.452 30.769 0.00 0.00 0.00 2.41
4076 4535 9.167311 AGAAGACGATTTCATTTTAGCTGTTAT 57.833 29.630 0.00 0.00 0.00 1.89
4077 4536 9.774742 GAAGACGATTTCATTTTAGCTGTTATT 57.225 29.630 0.00 0.00 0.00 1.40
4081 4540 9.988350 ACGATTTCATTTTAGCTGTTATTACTG 57.012 29.630 0.00 0.00 0.00 2.74
4082 4541 8.947940 CGATTTCATTTTAGCTGTTATTACTGC 58.052 33.333 5.68 5.68 46.20 4.40
4090 4549 4.183539 GCTGTTATTACTGCACGATGTC 57.816 45.455 8.61 0.00 45.44 3.06
4091 4550 3.616821 GCTGTTATTACTGCACGATGTCA 59.383 43.478 8.61 0.00 45.44 3.58
4092 4551 4.492570 GCTGTTATTACTGCACGATGTCAC 60.493 45.833 8.61 0.00 45.44 3.67
4093 4552 4.561105 TGTTATTACTGCACGATGTCACA 58.439 39.130 0.00 0.00 0.00 3.58
4094 4553 5.175127 TGTTATTACTGCACGATGTCACAT 58.825 37.500 0.00 0.00 0.00 3.21
4095 4554 5.290885 TGTTATTACTGCACGATGTCACATC 59.709 40.000 7.83 7.83 0.00 3.06
4096 4555 3.311486 TTACTGCACGATGTCACATCA 57.689 42.857 18.05 0.00 0.00 3.07
4097 4556 2.391616 ACTGCACGATGTCACATCAT 57.608 45.000 18.05 0.00 0.00 2.45
4098 4557 2.274437 ACTGCACGATGTCACATCATC 58.726 47.619 18.05 6.32 40.29 2.92
4099 4558 2.273557 CTGCACGATGTCACATCATCA 58.726 47.619 18.05 10.30 42.82 3.07
4100 4559 2.273557 TGCACGATGTCACATCATCAG 58.726 47.619 18.05 3.85 42.82 2.90
4101 4560 1.004185 GCACGATGTCACATCATCAGC 60.004 52.381 18.05 11.02 42.82 4.26
4102 4561 2.273557 CACGATGTCACATCATCAGCA 58.726 47.619 18.05 0.00 42.82 4.41
4103 4562 2.870411 CACGATGTCACATCATCAGCAT 59.130 45.455 18.05 0.00 42.82 3.79
4104 4563 3.311596 CACGATGTCACATCATCAGCATT 59.688 43.478 18.05 0.00 42.82 3.56
4105 4564 3.943381 ACGATGTCACATCATCAGCATTT 59.057 39.130 18.05 0.00 42.82 2.32
4106 4565 4.201881 ACGATGTCACATCATCAGCATTTG 60.202 41.667 18.05 0.00 42.82 2.32
4107 4566 4.607955 GATGTCACATCATCAGCATTTGG 58.392 43.478 13.26 0.00 42.41 3.28
4108 4567 3.423749 TGTCACATCATCAGCATTTGGT 58.576 40.909 0.00 0.00 0.00 3.67
4109 4568 3.191791 TGTCACATCATCAGCATTTGGTG 59.808 43.478 3.39 3.39 44.29 4.17
4123 4582 3.360296 TGGTGATGCCAGCAAATGA 57.640 47.368 0.00 0.00 46.50 2.57
4124 4583 1.179152 TGGTGATGCCAGCAAATGAG 58.821 50.000 0.00 0.00 46.50 2.90
4125 4584 1.272037 TGGTGATGCCAGCAAATGAGA 60.272 47.619 0.00 0.00 46.50 3.27
4126 4585 2.029623 GGTGATGCCAGCAAATGAGAT 58.970 47.619 0.00 0.00 40.34 2.75
4127 4586 2.429610 GGTGATGCCAGCAAATGAGATT 59.570 45.455 0.00 0.00 40.34 2.40
4128 4587 3.444916 GTGATGCCAGCAAATGAGATTG 58.555 45.455 0.00 0.00 0.00 2.67
4129 4588 3.093814 TGATGCCAGCAAATGAGATTGT 58.906 40.909 0.00 0.00 32.80 2.71
4130 4589 3.512329 TGATGCCAGCAAATGAGATTGTT 59.488 39.130 0.00 0.00 32.80 2.83
4131 4590 4.705991 TGATGCCAGCAAATGAGATTGTTA 59.294 37.500 0.00 0.00 32.80 2.41
4132 4591 4.707030 TGCCAGCAAATGAGATTGTTAG 57.293 40.909 0.00 0.00 32.80 2.34
4133 4592 3.444742 TGCCAGCAAATGAGATTGTTAGG 59.555 43.478 0.00 0.00 32.80 2.69
4134 4593 3.181483 GCCAGCAAATGAGATTGTTAGGG 60.181 47.826 0.00 0.00 32.80 3.53
4135 4594 3.181483 CCAGCAAATGAGATTGTTAGGGC 60.181 47.826 0.00 0.00 32.80 5.19
4136 4595 3.444742 CAGCAAATGAGATTGTTAGGGCA 59.555 43.478 0.00 0.00 32.80 5.36
4137 4596 4.098960 CAGCAAATGAGATTGTTAGGGCAT 59.901 41.667 0.00 0.00 32.80 4.40
4138 4597 4.340381 AGCAAATGAGATTGTTAGGGCATC 59.660 41.667 0.00 0.00 32.80 3.91
4139 4598 4.340381 GCAAATGAGATTGTTAGGGCATCT 59.660 41.667 0.00 0.00 32.80 2.90
4140 4599 5.506982 GCAAATGAGATTGTTAGGGCATCTC 60.507 44.000 3.91 3.91 38.49 2.75
4141 4600 3.845781 TGAGATTGTTAGGGCATCTCC 57.154 47.619 7.53 0.00 37.53 3.71
4142 4601 3.114606 TGAGATTGTTAGGGCATCTCCA 58.885 45.455 7.53 0.00 37.53 3.86
4143 4602 3.523157 TGAGATTGTTAGGGCATCTCCAA 59.477 43.478 7.53 1.38 37.53 3.53
4144 4603 3.879892 GAGATTGTTAGGGCATCTCCAAC 59.120 47.826 0.00 0.00 36.21 3.77
4145 4604 2.107950 TTGTTAGGGCATCTCCAACG 57.892 50.000 0.00 0.00 36.21 4.10
4146 4605 0.392461 TGTTAGGGCATCTCCAACGC 60.392 55.000 0.00 0.00 36.21 4.84
4147 4606 0.392461 GTTAGGGCATCTCCAACGCA 60.392 55.000 0.00 0.00 36.21 5.24
4148 4607 0.107703 TTAGGGCATCTCCAACGCAG 60.108 55.000 0.00 0.00 36.21 5.18
4149 4608 0.975556 TAGGGCATCTCCAACGCAGA 60.976 55.000 0.00 0.00 36.21 4.26
4150 4609 2.109126 GGGCATCTCCAACGCAGAC 61.109 63.158 0.00 0.00 36.21 3.51
4151 4610 2.109126 GGCATCTCCAACGCAGACC 61.109 63.158 0.00 0.00 34.01 3.85
4152 4611 1.078848 GCATCTCCAACGCAGACCT 60.079 57.895 0.00 0.00 0.00 3.85
4153 4612 1.086634 GCATCTCCAACGCAGACCTC 61.087 60.000 0.00 0.00 0.00 3.85
4154 4613 0.247460 CATCTCCAACGCAGACCTCA 59.753 55.000 0.00 0.00 0.00 3.86
4155 4614 0.976641 ATCTCCAACGCAGACCTCAA 59.023 50.000 0.00 0.00 0.00 3.02
4156 4615 0.756294 TCTCCAACGCAGACCTCAAA 59.244 50.000 0.00 0.00 0.00 2.69
4157 4616 0.868406 CTCCAACGCAGACCTCAAAC 59.132 55.000 0.00 0.00 0.00 2.93
4158 4617 0.534203 TCCAACGCAGACCTCAAACC 60.534 55.000 0.00 0.00 0.00 3.27
4159 4618 1.569493 CAACGCAGACCTCAAACCG 59.431 57.895 0.00 0.00 0.00 4.44
4160 4619 2.251642 AACGCAGACCTCAAACCGC 61.252 57.895 0.00 0.00 0.00 5.68
4161 4620 3.423154 CGCAGACCTCAAACCGCC 61.423 66.667 0.00 0.00 0.00 6.13
4162 4621 3.056328 GCAGACCTCAAACCGCCC 61.056 66.667 0.00 0.00 0.00 6.13
4163 4622 2.742372 CAGACCTCAAACCGCCCG 60.742 66.667 0.00 0.00 0.00 6.13
4164 4623 4.699522 AGACCTCAAACCGCCCGC 62.700 66.667 0.00 0.00 0.00 6.13
4166 4625 4.572571 ACCTCAAACCGCCCGCAA 62.573 61.111 0.00 0.00 0.00 4.85
4167 4626 3.291383 CCTCAAACCGCCCGCAAA 61.291 61.111 0.00 0.00 0.00 3.68
4168 4627 2.635443 CCTCAAACCGCCCGCAAAT 61.635 57.895 0.00 0.00 0.00 2.32
4169 4628 1.444212 CTCAAACCGCCCGCAAATG 60.444 57.895 0.00 0.00 0.00 2.32
4170 4629 2.141122 CTCAAACCGCCCGCAAATGT 62.141 55.000 0.00 0.00 0.00 2.71
4171 4630 1.300542 CAAACCGCCCGCAAATGTT 60.301 52.632 0.00 0.00 0.00 2.71
4172 4631 0.878086 CAAACCGCCCGCAAATGTTT 60.878 50.000 0.00 0.00 0.00 2.83
4173 4632 0.878086 AAACCGCCCGCAAATGTTTG 60.878 50.000 1.19 1.19 41.03 2.93
4174 4633 1.739338 AACCGCCCGCAAATGTTTGA 61.739 50.000 9.53 0.00 40.55 2.69
4175 4634 1.006805 CCGCCCGCAAATGTTTGAA 60.007 52.632 9.53 0.00 40.55 2.69
4176 4635 1.281566 CCGCCCGCAAATGTTTGAAC 61.282 55.000 9.53 0.00 40.55 3.18
4177 4636 0.318614 CGCCCGCAAATGTTTGAACT 60.319 50.000 9.53 0.00 40.55 3.01
4178 4637 1.139163 GCCCGCAAATGTTTGAACTG 58.861 50.000 9.53 0.00 40.55 3.16
4179 4638 1.269517 GCCCGCAAATGTTTGAACTGA 60.270 47.619 9.53 0.00 40.55 3.41
4180 4639 2.610232 GCCCGCAAATGTTTGAACTGAT 60.610 45.455 9.53 0.00 40.55 2.90
4181 4640 2.988493 CCCGCAAATGTTTGAACTGATG 59.012 45.455 9.53 0.00 40.55 3.07
4182 4641 2.409378 CCGCAAATGTTTGAACTGATGC 59.591 45.455 9.53 2.79 40.55 3.91
4183 4642 2.409378 CGCAAATGTTTGAACTGATGCC 59.591 45.455 9.53 0.00 40.55 4.40
4184 4643 3.391965 GCAAATGTTTGAACTGATGCCA 58.608 40.909 9.53 0.00 40.55 4.92
4185 4644 3.998341 GCAAATGTTTGAACTGATGCCAT 59.002 39.130 9.53 0.00 40.55 4.40
4186 4645 4.092383 GCAAATGTTTGAACTGATGCCATC 59.908 41.667 9.53 0.00 40.55 3.51
4187 4646 3.770263 ATGTTTGAACTGATGCCATCG 57.230 42.857 0.00 0.00 0.00 3.84
4188 4647 1.811965 TGTTTGAACTGATGCCATCGG 59.188 47.619 12.01 12.01 41.49 4.18
4193 4652 3.159298 ACTGATGCCATCGGTTCAC 57.841 52.632 13.44 0.00 46.36 3.18
4194 4653 0.740868 ACTGATGCCATCGGTTCACG 60.741 55.000 13.44 0.00 46.36 4.35
4195 4654 1.431488 CTGATGCCATCGGTTCACGG 61.431 60.000 5.30 0.00 44.45 4.94
4196 4655 1.153449 GATGCCATCGGTTCACGGA 60.153 57.895 0.00 0.00 44.45 4.69
4197 4656 1.429148 GATGCCATCGGTTCACGGAC 61.429 60.000 0.00 0.00 44.45 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.002134 AAGCCACATCAAGGGACGG 60.002 57.895 0.00 0.00 0.00 4.79
54 55 1.270305 CCAAGAACAGAACAGAGCGGA 60.270 52.381 0.00 0.00 0.00 5.54
55 56 1.151668 CCAAGAACAGAACAGAGCGG 58.848 55.000 0.00 0.00 0.00 5.52
56 57 0.514691 GCCAAGAACAGAACAGAGCG 59.485 55.000 0.00 0.00 0.00 5.03
57 58 0.877743 GGCCAAGAACAGAACAGAGC 59.122 55.000 0.00 0.00 0.00 4.09
58 59 1.151668 CGGCCAAGAACAGAACAGAG 58.848 55.000 2.24 0.00 0.00 3.35
239 260 1.380650 AGAGGGGGAGACGAGAAGC 60.381 63.158 0.00 0.00 0.00 3.86
325 346 0.430110 GACGAGCAAAGACGACGAAC 59.570 55.000 0.00 0.00 0.00 3.95
359 386 4.131376 CCATGATGTGGCGGAGAC 57.869 61.111 0.00 0.00 42.12 3.36
367 394 1.133884 ACAGGCTGGATCCATGATGTG 60.134 52.381 16.63 11.03 0.00 3.21
368 395 1.219773 ACAGGCTGGATCCATGATGT 58.780 50.000 16.63 16.38 0.00 3.06
510 537 2.158430 ACCGGAAAACCAACCCAAGTAT 60.158 45.455 9.46 0.00 0.00 2.12
513 540 0.387565 CACCGGAAAACCAACCCAAG 59.612 55.000 9.46 0.00 0.00 3.61
573 600 3.888323 TCAACCTATGTGCTGCTGAAAAA 59.112 39.130 0.00 0.00 0.00 1.94
580 607 6.030548 TCTATCTATCAACCTATGTGCTGC 57.969 41.667 0.00 0.00 0.00 5.25
594 621 5.830991 AGCCTAATCCGTCCATCTATCTATC 59.169 44.000 0.00 0.00 0.00 2.08
595 622 5.772004 AGCCTAATCCGTCCATCTATCTAT 58.228 41.667 0.00 0.00 0.00 1.98
596 623 5.194473 AGCCTAATCCGTCCATCTATCTA 57.806 43.478 0.00 0.00 0.00 1.98
597 624 4.054359 AGCCTAATCCGTCCATCTATCT 57.946 45.455 0.00 0.00 0.00 1.98
648 686 3.752222 GGAAATAGATGAGATGCCAGCAG 59.248 47.826 0.00 0.00 0.00 4.24
649 687 3.393609 AGGAAATAGATGAGATGCCAGCA 59.606 43.478 0.00 0.00 0.00 4.41
650 688 4.002316 GAGGAAATAGATGAGATGCCAGC 58.998 47.826 0.00 0.00 0.00 4.85
651 689 4.041321 TGGAGGAAATAGATGAGATGCCAG 59.959 45.833 0.00 0.00 0.00 4.85
652 690 3.975982 TGGAGGAAATAGATGAGATGCCA 59.024 43.478 0.00 0.00 0.00 4.92
653 691 4.322567 GTGGAGGAAATAGATGAGATGCC 58.677 47.826 0.00 0.00 0.00 4.40
654 692 4.041444 AGGTGGAGGAAATAGATGAGATGC 59.959 45.833 0.00 0.00 0.00 3.91
655 693 5.549347 CAGGTGGAGGAAATAGATGAGATG 58.451 45.833 0.00 0.00 0.00 2.90
656 694 4.041444 GCAGGTGGAGGAAATAGATGAGAT 59.959 45.833 0.00 0.00 0.00 2.75
657 695 3.389329 GCAGGTGGAGGAAATAGATGAGA 59.611 47.826 0.00 0.00 0.00 3.27
658 696 3.135348 TGCAGGTGGAGGAAATAGATGAG 59.865 47.826 0.00 0.00 0.00 2.90
659 697 3.114606 TGCAGGTGGAGGAAATAGATGA 58.885 45.455 0.00 0.00 0.00 2.92
660 698 3.565764 TGCAGGTGGAGGAAATAGATG 57.434 47.619 0.00 0.00 0.00 2.90
661 699 4.803329 AATGCAGGTGGAGGAAATAGAT 57.197 40.909 0.00 0.00 0.00 1.98
662 700 4.591321 AAATGCAGGTGGAGGAAATAGA 57.409 40.909 0.00 0.00 0.00 1.98
751 791 1.460504 GTTTGGGAGACGGGATTTCC 58.539 55.000 0.00 0.00 0.00 3.13
752 792 1.084289 CGTTTGGGAGACGGGATTTC 58.916 55.000 0.00 0.00 36.90 2.17
767 807 1.160137 GACAATCTGCTGCCTCGTTT 58.840 50.000 0.00 0.00 0.00 3.60
768 808 0.674895 GGACAATCTGCTGCCTCGTT 60.675 55.000 0.00 0.00 0.00 3.85
769 809 1.078848 GGACAATCTGCTGCCTCGT 60.079 57.895 0.00 0.00 0.00 4.18
776 816 0.613260 TAACGCTGGGACAATCTGCT 59.387 50.000 0.00 0.00 38.70 4.24
813 854 3.333381 TGATTTGAAGGGGTTGAGATGGA 59.667 43.478 0.00 0.00 0.00 3.41
815 856 5.657474 CATTGATTTGAAGGGGTTGAGATG 58.343 41.667 0.00 0.00 0.00 2.90
876 945 0.962356 AGACAGCGGCAATTCAAGGG 60.962 55.000 1.45 0.00 0.00 3.95
963 1077 3.066481 GGGTCGGAGTATACAGTTCAGAC 59.934 52.174 5.50 9.89 35.98 3.51
964 1078 3.053842 AGGGTCGGAGTATACAGTTCAGA 60.054 47.826 5.50 0.00 0.00 3.27
965 1079 3.288964 AGGGTCGGAGTATACAGTTCAG 58.711 50.000 5.50 0.00 0.00 3.02
966 1080 3.285484 GAGGGTCGGAGTATACAGTTCA 58.715 50.000 5.50 0.00 0.00 3.18
967 1081 2.622470 GGAGGGTCGGAGTATACAGTTC 59.378 54.545 5.50 0.00 0.00 3.01
968 1082 2.664015 GGAGGGTCGGAGTATACAGTT 58.336 52.381 5.50 0.00 0.00 3.16
969 1083 1.476471 CGGAGGGTCGGAGTATACAGT 60.476 57.143 5.50 0.00 0.00 3.55
970 1084 1.236628 CGGAGGGTCGGAGTATACAG 58.763 60.000 5.50 0.00 0.00 2.74
971 1085 0.548031 ACGGAGGGTCGGAGTATACA 59.452 55.000 5.50 0.00 0.00 2.29
988 1102 0.891373 ATCCAGACTCTGTGGTCACG 59.109 55.000 5.32 0.00 38.57 4.35
1049 1179 0.250513 CCTCCTAGCACAACCTCCAC 59.749 60.000 0.00 0.00 0.00 4.02
1050 1180 0.116342 TCCTCCTAGCACAACCTCCA 59.884 55.000 0.00 0.00 0.00 3.86
1051 1181 0.537653 GTCCTCCTAGCACAACCTCC 59.462 60.000 0.00 0.00 0.00 4.30
1052 1182 1.205893 CAGTCCTCCTAGCACAACCTC 59.794 57.143 0.00 0.00 0.00 3.85
1053 1183 1.270907 CAGTCCTCCTAGCACAACCT 58.729 55.000 0.00 0.00 0.00 3.50
1054 1184 0.391793 GCAGTCCTCCTAGCACAACC 60.392 60.000 0.00 0.00 0.00 3.77
1055 1185 0.737715 CGCAGTCCTCCTAGCACAAC 60.738 60.000 0.00 0.00 0.00 3.32
1056 1186 0.898326 TCGCAGTCCTCCTAGCACAA 60.898 55.000 0.00 0.00 0.00 3.33
1057 1187 1.304134 TCGCAGTCCTCCTAGCACA 60.304 57.895 0.00 0.00 0.00 4.57
1058 1188 1.139947 GTCGCAGTCCTCCTAGCAC 59.860 63.158 0.00 0.00 0.00 4.40
1059 1189 2.052690 GGTCGCAGTCCTCCTAGCA 61.053 63.158 0.00 0.00 31.62 3.49
1264 1394 2.286523 CCTCTCCTCGTGCCTTGGT 61.287 63.158 0.00 0.00 0.00 3.67
1265 1395 2.581354 CCTCTCCTCGTGCCTTGG 59.419 66.667 0.00 0.00 0.00 3.61
1266 1396 2.125350 GCCTCTCCTCGTGCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
1283 1418 3.560896 CACTGCAATTTCCCCAAAAGTTG 59.439 43.478 0.00 0.00 0.00 3.16
1290 1425 2.831859 TTGCACTGCAATTTCCCCA 58.168 47.368 12.59 0.00 43.99 4.96
1310 1445 8.322906 TGAACTACATGATACTGTTCCTTTTG 57.677 34.615 0.00 0.00 36.98 2.44
1315 1450 7.011482 GGTGATTGAACTACATGATACTGTTCC 59.989 40.741 0.00 0.00 36.98 3.62
1316 1451 7.766278 AGGTGATTGAACTACATGATACTGTTC 59.234 37.037 0.00 6.87 37.92 3.18
1336 1472 7.121168 CACAACACAGGTAAATAATCAGGTGAT 59.879 37.037 0.00 0.00 36.07 3.06
1358 1494 2.752354 CAAACTCCACAGGTTGTCACAA 59.248 45.455 0.00 0.00 41.82 3.33
1382 1519 1.022735 GACTGATGAGGCCTTGCATG 58.977 55.000 6.77 0.00 0.00 4.06
1451 1588 1.136891 TGGTGATGCATACAGGTCGAG 59.863 52.381 0.00 0.00 0.00 4.04
1453 1590 2.138320 GATGGTGATGCATACAGGTCG 58.862 52.381 0.00 0.00 0.00 4.79
1527 1668 6.272090 ACAGGGAAATGGTCAATTATTGGTTT 59.728 34.615 5.02 2.51 0.00 3.27
1570 1711 2.173669 CCGGCGATGCTCGAAACAT 61.174 57.895 9.30 0.40 43.74 2.71
1586 1736 1.135972 CGCTGAACAATTGAAGTCCCG 60.136 52.381 13.59 8.01 0.00 5.14
1651 1801 4.220382 CCAAATCTATCAGAGCCTCGATCT 59.780 45.833 2.99 0.00 0.00 2.75
1666 1816 7.888021 ACATACACTGAACAATTCCCAAATCTA 59.112 33.333 0.00 0.00 0.00 1.98
1678 1828 8.445275 AGTTAATCACAACATACACTGAACAA 57.555 30.769 0.00 0.00 0.00 2.83
1680 1830 8.774586 AGAAGTTAATCACAACATACACTGAAC 58.225 33.333 0.00 0.00 0.00 3.18
1681 1831 8.902540 AGAAGTTAATCACAACATACACTGAA 57.097 30.769 0.00 0.00 0.00 3.02
1682 1832 8.902540 AAGAAGTTAATCACAACATACACTGA 57.097 30.769 0.00 0.00 0.00 3.41
1683 1833 9.950680 AAAAGAAGTTAATCACAACATACACTG 57.049 29.630 0.00 0.00 0.00 3.66
1701 1851 9.313118 GGTGACAAAATCATTACAAAAAGAAGT 57.687 29.630 0.00 0.00 40.28 3.01
1702 1852 9.311916 TGGTGACAAAATCATTACAAAAAGAAG 57.688 29.630 0.00 0.00 40.28 2.85
1717 1867 2.026822 AGCCTCGATCTGGTGACAAAAT 60.027 45.455 0.00 0.00 42.06 1.82
2009 2160 2.047179 AAGAAAGGCTCGCCGGAC 60.047 61.111 5.05 0.00 41.95 4.79
2189 2340 2.555199 AGCGACATTTCTCAGCATACC 58.445 47.619 0.00 0.00 0.00 2.73
2225 2380 2.039879 AGGCTCGTCCACCTTTTTGTAT 59.960 45.455 0.00 0.00 37.29 2.29
2226 2381 1.418637 AGGCTCGTCCACCTTTTTGTA 59.581 47.619 0.00 0.00 37.29 2.41
2228 2383 1.266989 GAAGGCTCGTCCACCTTTTTG 59.733 52.381 0.00 0.00 46.33 2.44
2573 2728 4.954970 ACCAGCACGTTGCCCAGG 62.955 66.667 6.39 8.54 46.52 4.45
2676 2831 4.008933 GGTGCACCTCGACAGCCT 62.009 66.667 29.12 0.00 0.00 4.58
3033 3195 0.250727 TAGACACTTGGCAGTTGGGC 60.251 55.000 2.89 0.00 43.73 5.36
3124 3286 2.100252 GCCCGGGGCTTAAATTTAACTC 59.900 50.000 30.86 4.59 46.69 3.01
3125 3287 2.104967 GCCCGGGGCTTAAATTTAACT 58.895 47.619 30.86 0.00 46.69 2.24
3197 3359 6.109156 ACACATCACACAGAAATGGTACTA 57.891 37.500 0.00 0.00 0.00 1.82
3198 3360 4.973168 ACACATCACACAGAAATGGTACT 58.027 39.130 0.00 0.00 0.00 2.73
3199 3361 5.334879 GGAACACATCACACAGAAATGGTAC 60.335 44.000 0.00 0.00 0.00 3.34
3200 3362 4.759693 GGAACACATCACACAGAAATGGTA 59.240 41.667 0.00 0.00 0.00 3.25
3201 3363 3.569701 GGAACACATCACACAGAAATGGT 59.430 43.478 0.00 0.00 0.00 3.55
3202 3364 3.822735 AGGAACACATCACACAGAAATGG 59.177 43.478 0.00 0.00 0.00 3.16
3223 3396 5.562506 TGTACGACTTCTAACTCATGGAG 57.437 43.478 0.00 0.00 35.52 3.86
3231 3404 5.162075 AGTGCAGATTGTACGACTTCTAAC 58.838 41.667 0.00 0.00 38.05 2.34
3233 3406 5.413523 TGTAGTGCAGATTGTACGACTTCTA 59.586 40.000 10.58 0.00 38.80 2.10
3312 3485 3.300667 CTGCAGAAGAACGCGGTGC 62.301 63.158 8.42 3.14 34.62 5.01
3314 3487 2.421739 ACTGCAGAAGAACGCGGT 59.578 55.556 23.35 1.91 42.87 5.68
3315 3488 0.946221 AGAACTGCAGAAGAACGCGG 60.946 55.000 23.35 0.00 40.48 6.46
3316 3489 0.162507 CAGAACTGCAGAAGAACGCG 59.837 55.000 23.35 3.53 0.00 6.01
3328 3501 2.787473 TGCTCCCATAACCAGAACTG 57.213 50.000 0.00 0.00 0.00 3.16
3333 3506 5.603170 AAATGAAATGCTCCCATAACCAG 57.397 39.130 0.00 0.00 0.00 4.00
3340 3513 2.833338 CCTGGAAAATGAAATGCTCCCA 59.167 45.455 0.00 0.00 29.05 4.37
3352 3525 5.949952 GGACAGTATACCAAACCTGGAAAAT 59.050 40.000 0.00 0.00 46.92 1.82
3392 3780 1.104577 TGAAAACGTGGCCAAGTCCC 61.105 55.000 24.98 16.08 0.00 4.46
3398 3819 1.202830 ACCTACATGAAAACGTGGCCA 60.203 47.619 0.00 0.00 0.00 5.36
3412 3833 1.454104 CCACAACTGGCCACCTACA 59.546 57.895 0.00 0.00 0.00 2.74
3429 3850 4.424566 CACTGCCACAATGCCGCC 62.425 66.667 0.00 0.00 0.00 6.13
3454 3875 4.487714 AAATAACTCGGGATCAGAAGCA 57.512 40.909 0.00 0.00 0.00 3.91
3467 3888 4.746611 GCCATTTGCCAGCATAAATAACTC 59.253 41.667 0.00 0.00 0.00 3.01
3533 3955 7.042725 CGATCGGTGTGCCCTAATTATATATTG 60.043 40.741 7.38 0.00 0.00 1.90
3534 3956 6.984474 CGATCGGTGTGCCCTAATTATATATT 59.016 38.462 7.38 0.00 0.00 1.28
3614 4042 2.890808 TGAAGAAACAGTCTCGTGCT 57.109 45.000 0.00 0.00 34.56 4.40
3660 4088 4.636206 GCCACCATCCAGAAACTAAAGTAG 59.364 45.833 0.00 0.00 0.00 2.57
3662 4090 3.181434 TGCCACCATCCAGAAACTAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
3713 4141 0.955905 GTTTAAAGCGCAGGTGGGAA 59.044 50.000 11.47 0.00 39.47 3.97
3740 4198 2.638556 ACTTTGTCAGGTCGAGATCG 57.361 50.000 0.00 0.00 41.45 3.69
3791 4250 6.039717 TCCAGCTATCATTCATTTGTTAAGGC 59.960 38.462 0.00 0.00 0.00 4.35
3794 4253 7.068470 TGCATCCAGCTATCATTCATTTGTTAA 59.932 33.333 0.00 0.00 45.94 2.01
3805 4264 4.135306 CAACTTCTGCATCCAGCTATCAT 58.865 43.478 0.00 0.00 45.94 2.45
3806 4265 3.198417 TCAACTTCTGCATCCAGCTATCA 59.802 43.478 0.00 0.00 45.94 2.15
3807 4266 3.559242 GTCAACTTCTGCATCCAGCTATC 59.441 47.826 0.00 0.00 45.94 2.08
3808 4267 3.539604 GTCAACTTCTGCATCCAGCTAT 58.460 45.455 0.00 0.00 45.94 2.97
3818 4277 3.058155 TCTCTCAGTACGTCAACTTCTGC 60.058 47.826 0.00 0.00 0.00 4.26
3832 4291 2.043664 TCCTTGGATGGAGTCTCTCAGT 59.956 50.000 0.00 0.00 31.08 3.41
3841 4300 0.102481 CCGTACGTCCTTGGATGGAG 59.898 60.000 15.21 4.29 36.69 3.86
3849 4308 0.394080 CTCCTCTCCCGTACGTCCTT 60.394 60.000 15.21 0.00 0.00 3.36
3876 4335 2.332362 ATCGCACGATCGGCTTACGT 62.332 55.000 20.98 0.00 44.69 3.57
3886 4345 2.279517 GCCTTCCGATCGCACGAT 60.280 61.111 10.32 5.01 37.59 3.73
3944 4403 5.359860 CAGTTTGTTTAGGTGAAAGGTCCTT 59.640 40.000 0.00 0.00 35.51 3.36
3957 4416 4.853924 ACCCAATCAGCAGTTTGTTTAG 57.146 40.909 0.06 0.00 0.00 1.85
3967 4426 1.675310 CCGCTCAACCCAATCAGCA 60.675 57.895 0.00 0.00 0.00 4.41
4020 4479 1.446272 GGGTTCGTCTCCTTGAGCG 60.446 63.158 0.00 0.00 33.22 5.03
4024 4483 1.614241 ATCGGGGGTTCGTCTCCTTG 61.614 60.000 0.11 0.00 36.78 3.61
4026 4485 1.757340 GATCGGGGGTTCGTCTCCT 60.757 63.158 0.11 0.00 36.78 3.69
4029 4488 3.145551 CGGATCGGGGGTTCGTCT 61.146 66.667 0.00 0.00 0.00 4.18
4030 4489 4.217159 CCGGATCGGGGGTTCGTC 62.217 72.222 11.44 0.00 44.15 4.20
4041 4500 1.041437 AATCGTCTTCTCCCCGGATC 58.959 55.000 0.73 0.00 0.00 3.36
4042 4501 1.413077 GAAATCGTCTTCTCCCCGGAT 59.587 52.381 0.73 0.00 0.00 4.18
4043 4502 0.822164 GAAATCGTCTTCTCCCCGGA 59.178 55.000 0.73 0.00 0.00 5.14
4044 4503 0.535335 TGAAATCGTCTTCTCCCCGG 59.465 55.000 0.00 0.00 0.00 5.73
4045 4504 2.604046 ATGAAATCGTCTTCTCCCCG 57.396 50.000 1.94 0.00 0.00 5.73
4046 4505 5.220873 GCTAAAATGAAATCGTCTTCTCCCC 60.221 44.000 1.94 0.00 0.00 4.81
4047 4506 5.586643 AGCTAAAATGAAATCGTCTTCTCCC 59.413 40.000 0.00 0.00 0.00 4.30
4048 4507 6.092807 ACAGCTAAAATGAAATCGTCTTCTCC 59.907 38.462 0.00 0.00 0.00 3.71
4049 4508 7.066374 ACAGCTAAAATGAAATCGTCTTCTC 57.934 36.000 0.00 0.00 0.00 2.87
4050 4509 7.440523 AACAGCTAAAATGAAATCGTCTTCT 57.559 32.000 0.00 0.00 0.00 2.85
4051 4510 9.774742 AATAACAGCTAAAATGAAATCGTCTTC 57.225 29.630 0.00 0.00 0.00 2.87
4055 4514 9.988350 CAGTAATAACAGCTAAAATGAAATCGT 57.012 29.630 0.00 0.00 0.00 3.73
4056 4515 8.947940 GCAGTAATAACAGCTAAAATGAAATCG 58.052 33.333 0.00 0.00 35.39 3.34
4057 4516 9.787532 TGCAGTAATAACAGCTAAAATGAAATC 57.212 29.630 0.00 0.00 38.81 2.17
4058 4517 9.573133 GTGCAGTAATAACAGCTAAAATGAAAT 57.427 29.630 0.00 0.00 38.81 2.17
4059 4518 7.748683 CGTGCAGTAATAACAGCTAAAATGAAA 59.251 33.333 0.00 0.00 38.81 2.69
4060 4519 7.118535 TCGTGCAGTAATAACAGCTAAAATGAA 59.881 33.333 0.00 0.00 38.81 2.57
4061 4520 6.592220 TCGTGCAGTAATAACAGCTAAAATGA 59.408 34.615 0.00 0.00 38.81 2.57
4062 4521 6.771076 TCGTGCAGTAATAACAGCTAAAATG 58.229 36.000 0.00 0.00 38.81 2.32
4063 4522 6.978343 TCGTGCAGTAATAACAGCTAAAAT 57.022 33.333 0.00 0.00 38.81 1.82
4064 4523 6.370442 ACATCGTGCAGTAATAACAGCTAAAA 59.630 34.615 0.00 0.00 38.81 1.52
4065 4524 5.872617 ACATCGTGCAGTAATAACAGCTAAA 59.127 36.000 0.00 0.00 38.81 1.85
4066 4525 5.416083 ACATCGTGCAGTAATAACAGCTAA 58.584 37.500 0.00 0.00 38.81 3.09
4067 4526 5.006153 ACATCGTGCAGTAATAACAGCTA 57.994 39.130 0.00 0.00 38.81 3.32
4068 4527 3.861840 ACATCGTGCAGTAATAACAGCT 58.138 40.909 0.00 0.00 38.81 4.24
4069 4528 3.616821 TGACATCGTGCAGTAATAACAGC 59.383 43.478 0.00 0.00 38.53 4.40
4070 4529 4.625311 TGTGACATCGTGCAGTAATAACAG 59.375 41.667 0.00 0.00 0.00 3.16
4071 4530 4.561105 TGTGACATCGTGCAGTAATAACA 58.439 39.130 0.00 0.00 0.00 2.41
4072 4531 5.290885 TGATGTGACATCGTGCAGTAATAAC 59.709 40.000 19.53 0.00 0.00 1.89
4073 4532 5.415221 TGATGTGACATCGTGCAGTAATAA 58.585 37.500 19.53 0.00 0.00 1.40
4074 4533 5.004922 TGATGTGACATCGTGCAGTAATA 57.995 39.130 19.53 0.00 0.00 0.98
4075 4534 3.860641 TGATGTGACATCGTGCAGTAAT 58.139 40.909 19.53 0.00 0.00 1.89
4076 4535 3.311486 TGATGTGACATCGTGCAGTAA 57.689 42.857 19.53 0.00 0.00 2.24
4077 4536 3.119173 TGATGATGTGACATCGTGCAGTA 60.119 43.478 23.72 3.56 46.49 2.74
4078 4537 2.274437 GATGATGTGACATCGTGCAGT 58.726 47.619 23.72 4.37 37.50 4.40
4079 4538 2.273557 TGATGATGTGACATCGTGCAG 58.726 47.619 23.72 0.00 46.49 4.41
4080 4539 2.273557 CTGATGATGTGACATCGTGCA 58.726 47.619 23.72 18.21 46.49 4.57
4081 4540 1.004185 GCTGATGATGTGACATCGTGC 60.004 52.381 23.72 17.48 46.49 5.34
4082 4541 2.273557 TGCTGATGATGTGACATCGTG 58.726 47.619 23.72 12.04 46.49 4.35
4083 4542 2.678471 TGCTGATGATGTGACATCGT 57.322 45.000 19.41 19.41 46.49 3.73
4084 4543 4.279659 CAAATGCTGATGATGTGACATCG 58.720 43.478 19.53 7.36 46.49 3.84
4085 4544 4.097437 ACCAAATGCTGATGATGTGACATC 59.903 41.667 18.25 18.25 44.58 3.06
4086 4545 4.021229 ACCAAATGCTGATGATGTGACAT 58.979 39.130 0.00 0.00 0.00 3.06
4087 4546 3.191791 CACCAAATGCTGATGATGTGACA 59.808 43.478 0.00 0.00 0.00 3.58
4088 4547 3.441222 TCACCAAATGCTGATGATGTGAC 59.559 43.478 0.00 0.00 0.00 3.67
4089 4548 3.688235 TCACCAAATGCTGATGATGTGA 58.312 40.909 0.00 0.00 0.00 3.58
4090 4549 4.359706 CATCACCAAATGCTGATGATGTG 58.640 43.478 11.56 0.00 44.51 3.21
4091 4550 3.181479 GCATCACCAAATGCTGATGATGT 60.181 43.478 18.40 0.00 46.81 3.06
4092 4551 3.381045 GCATCACCAAATGCTGATGATG 58.619 45.455 18.40 9.41 46.81 3.07
4093 4552 3.728076 GCATCACCAAATGCTGATGAT 57.272 42.857 18.40 0.00 46.81 2.45
4106 4565 1.466856 TCTCATTTGCTGGCATCACC 58.533 50.000 0.00 0.00 39.84 4.02
4107 4566 3.119245 ACAATCTCATTTGCTGGCATCAC 60.119 43.478 0.00 0.00 0.00 3.06
4108 4567 3.093814 ACAATCTCATTTGCTGGCATCA 58.906 40.909 0.00 0.00 0.00 3.07
4109 4568 3.795623 ACAATCTCATTTGCTGGCATC 57.204 42.857 0.00 0.00 0.00 3.91
4110 4569 4.098960 CCTAACAATCTCATTTGCTGGCAT 59.901 41.667 0.00 0.00 0.00 4.40
4111 4570 3.444742 CCTAACAATCTCATTTGCTGGCA 59.555 43.478 0.00 0.00 0.00 4.92
4112 4571 3.181483 CCCTAACAATCTCATTTGCTGGC 60.181 47.826 0.00 0.00 0.00 4.85
4113 4572 3.181483 GCCCTAACAATCTCATTTGCTGG 60.181 47.826 0.00 0.00 0.00 4.85
4114 4573 3.444742 TGCCCTAACAATCTCATTTGCTG 59.555 43.478 0.00 0.00 0.00 4.41
4115 4574 3.700538 TGCCCTAACAATCTCATTTGCT 58.299 40.909 0.00 0.00 0.00 3.91
4116 4575 4.340381 AGATGCCCTAACAATCTCATTTGC 59.660 41.667 0.00 0.00 0.00 3.68
4117 4576 5.009410 GGAGATGCCCTAACAATCTCATTTG 59.991 44.000 12.51 0.00 39.45 2.32
4118 4577 5.136105 GGAGATGCCCTAACAATCTCATTT 58.864 41.667 12.51 0.00 39.45 2.32
4119 4578 4.166725 TGGAGATGCCCTAACAATCTCATT 59.833 41.667 12.51 0.00 39.45 2.57
4120 4579 3.718434 TGGAGATGCCCTAACAATCTCAT 59.282 43.478 12.51 0.00 39.45 2.90
4121 4580 3.114606 TGGAGATGCCCTAACAATCTCA 58.885 45.455 12.51 0.00 39.45 3.27
4122 4581 3.845781 TGGAGATGCCCTAACAATCTC 57.154 47.619 3.78 3.78 37.59 2.75
4123 4582 3.682718 CGTTGGAGATGCCCTAACAATCT 60.683 47.826 0.00 0.00 34.97 2.40
4124 4583 2.614057 CGTTGGAGATGCCCTAACAATC 59.386 50.000 0.00 0.00 34.97 2.67
4125 4584 2.643551 CGTTGGAGATGCCCTAACAAT 58.356 47.619 0.00 0.00 34.97 2.71
4126 4585 1.948611 GCGTTGGAGATGCCCTAACAA 60.949 52.381 0.00 0.00 34.03 2.83
4127 4586 0.392461 GCGTTGGAGATGCCCTAACA 60.392 55.000 0.00 0.00 34.03 2.41
4128 4587 0.392461 TGCGTTGGAGATGCCCTAAC 60.392 55.000 0.00 0.00 39.64 2.34
4129 4588 0.107703 CTGCGTTGGAGATGCCCTAA 60.108 55.000 0.00 0.00 39.64 2.69
4130 4589 0.975556 TCTGCGTTGGAGATGCCCTA 60.976 55.000 0.00 0.00 39.64 3.53
4131 4590 2.270205 CTGCGTTGGAGATGCCCT 59.730 61.111 0.00 0.00 39.64 5.19
4132 4591 2.109126 GTCTGCGTTGGAGATGCCC 61.109 63.158 0.00 0.00 39.64 5.36
4133 4592 2.109126 GGTCTGCGTTGGAGATGCC 61.109 63.158 0.00 0.00 39.64 4.40
4134 4593 1.078848 AGGTCTGCGTTGGAGATGC 60.079 57.895 0.00 0.00 40.83 3.91
4135 4594 0.247460 TGAGGTCTGCGTTGGAGATG 59.753 55.000 0.00 0.00 0.00 2.90
4136 4595 0.976641 TTGAGGTCTGCGTTGGAGAT 59.023 50.000 0.00 0.00 0.00 2.75
4137 4596 0.756294 TTTGAGGTCTGCGTTGGAGA 59.244 50.000 0.00 0.00 0.00 3.71
4138 4597 0.868406 GTTTGAGGTCTGCGTTGGAG 59.132 55.000 0.00 0.00 0.00 3.86
4139 4598 0.534203 GGTTTGAGGTCTGCGTTGGA 60.534 55.000 0.00 0.00 0.00 3.53
4140 4599 1.841663 CGGTTTGAGGTCTGCGTTGG 61.842 60.000 0.00 0.00 0.00 3.77
4141 4600 1.569493 CGGTTTGAGGTCTGCGTTG 59.431 57.895 0.00 0.00 0.00 4.10
4142 4601 2.251642 GCGGTTTGAGGTCTGCGTT 61.252 57.895 0.00 0.00 0.00 4.84
4143 4602 2.665185 GCGGTTTGAGGTCTGCGT 60.665 61.111 0.00 0.00 0.00 5.24
4144 4603 3.423154 GGCGGTTTGAGGTCTGCG 61.423 66.667 0.00 0.00 36.88 5.18
4145 4604 3.056328 GGGCGGTTTGAGGTCTGC 61.056 66.667 0.00 0.00 35.47 4.26
4146 4605 2.742372 CGGGCGGTTTGAGGTCTG 60.742 66.667 0.00 0.00 0.00 3.51
4147 4606 4.699522 GCGGGCGGTTTGAGGTCT 62.700 66.667 0.00 0.00 0.00 3.85
4149 4608 4.572571 TTGCGGGCGGTTTGAGGT 62.573 61.111 0.00 0.00 0.00 3.85
4150 4609 2.635443 ATTTGCGGGCGGTTTGAGG 61.635 57.895 0.00 0.00 0.00 3.86
4151 4610 1.444212 CATTTGCGGGCGGTTTGAG 60.444 57.895 0.00 0.00 0.00 3.02
4152 4611 1.739338 AACATTTGCGGGCGGTTTGA 61.739 50.000 0.00 0.00 0.00 2.69
4153 4612 0.878086 AAACATTTGCGGGCGGTTTG 60.878 50.000 0.00 0.00 31.10 2.93
4154 4613 0.878086 CAAACATTTGCGGGCGGTTT 60.878 50.000 0.00 0.00 32.33 3.27
4155 4614 1.300542 CAAACATTTGCGGGCGGTT 60.301 52.632 0.00 0.00 0.00 4.44
4156 4615 1.739338 TTCAAACATTTGCGGGCGGT 61.739 50.000 0.00 0.00 38.05 5.68
4157 4616 1.006805 TTCAAACATTTGCGGGCGG 60.007 52.632 0.00 0.00 38.05 6.13
4158 4617 0.318614 AGTTCAAACATTTGCGGGCG 60.319 50.000 0.00 0.00 38.05 6.13
4159 4618 1.139163 CAGTTCAAACATTTGCGGGC 58.861 50.000 0.00 0.00 38.05 6.13
4160 4619 2.791383 TCAGTTCAAACATTTGCGGG 57.209 45.000 0.00 0.00 38.05 6.13
4161 4620 2.409378 GCATCAGTTCAAACATTTGCGG 59.591 45.455 0.00 0.00 38.05 5.69
4162 4621 2.409378 GGCATCAGTTCAAACATTTGCG 59.591 45.455 0.00 0.00 38.05 4.85
4163 4622 3.391965 TGGCATCAGTTCAAACATTTGC 58.608 40.909 0.00 1.44 38.05 3.68
4164 4623 4.325204 CGATGGCATCAGTTCAAACATTTG 59.675 41.667 25.88 1.90 39.48 2.32
4165 4624 4.487948 CGATGGCATCAGTTCAAACATTT 58.512 39.130 25.88 0.00 0.00 2.32
4166 4625 3.119388 CCGATGGCATCAGTTCAAACATT 60.119 43.478 25.88 0.00 0.00 2.71
4167 4626 2.424601 CCGATGGCATCAGTTCAAACAT 59.575 45.455 25.88 0.00 0.00 2.71
4168 4627 1.811965 CCGATGGCATCAGTTCAAACA 59.188 47.619 25.88 0.00 0.00 2.83
4169 4628 1.812571 ACCGATGGCATCAGTTCAAAC 59.187 47.619 25.88 0.00 0.00 2.93
4170 4629 2.198827 ACCGATGGCATCAGTTCAAA 57.801 45.000 25.88 0.00 0.00 2.69
4171 4630 2.083774 GAACCGATGGCATCAGTTCAA 58.916 47.619 35.04 0.00 43.08 2.69
4172 4631 1.737838 GAACCGATGGCATCAGTTCA 58.262 50.000 35.04 0.00 43.08 3.18
4173 4632 1.398390 GTGAACCGATGGCATCAGTTC 59.602 52.381 34.13 34.13 43.59 3.01
4174 4633 1.453155 GTGAACCGATGGCATCAGTT 58.547 50.000 24.97 24.97 32.86 3.16
4175 4634 0.740868 CGTGAACCGATGGCATCAGT 60.741 55.000 25.88 18.65 39.56 3.41
4176 4635 1.431488 CCGTGAACCGATGGCATCAG 61.431 60.000 25.88 17.97 39.56 2.90
4177 4636 1.449423 CCGTGAACCGATGGCATCA 60.449 57.895 25.88 5.95 39.56 3.07
4178 4637 1.153449 TCCGTGAACCGATGGCATC 60.153 57.895 17.58 17.58 39.56 3.91
4179 4638 1.449601 GTCCGTGAACCGATGGCAT 60.450 57.895 0.00 0.00 39.56 4.40
4180 4639 2.047655 GTCCGTGAACCGATGGCA 60.048 61.111 0.00 0.00 39.56 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.