Multiple sequence alignment - TraesCS4D01G210900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G210900 chr4D 100.000 3476 0 0 1 3476 363245743 363249218 0.000000e+00 6420.0
1 TraesCS4D01G210900 chr4D 91.700 506 26 10 1562 2059 350259463 350258966 0.000000e+00 688.0
2 TraesCS4D01G210900 chr4D 90.751 519 40 7 1048 1564 350265857 350265345 0.000000e+00 686.0
3 TraesCS4D01G210900 chr4D 89.056 466 26 1 3 468 492038569 492039009 3.920000e-154 555.0
4 TraesCS4D01G210900 chr4D 93.511 262 7 1 1 252 481841757 481842018 7.040000e-102 381.0
5 TraesCS4D01G210900 chr4D 92.453 265 10 4 1 255 506212595 506212331 1.520000e-98 370.0
6 TraesCS4D01G210900 chr4D 90.698 258 16 7 1 255 170665373 170665625 1.550000e-88 337.0
7 TraesCS4D01G210900 chr4B 93.101 3044 114 37 488 3476 448801255 448804257 0.000000e+00 4370.0
8 TraesCS4D01G210900 chr4B 90.249 482 37 1 1 472 649223614 649224095 3.810000e-174 621.0
9 TraesCS4D01G210900 chr4B 90.171 468 36 1 5 462 636136956 636137423 4.960000e-168 601.0
10 TraesCS4D01G210900 chr4A 90.989 3074 132 46 469 3476 102448202 102445208 0.000000e+00 4008.0
11 TraesCS4D01G210900 chr4A 87.261 471 35 1 1 471 100954514 100954069 6.650000e-142 514.0
12 TraesCS4D01G210900 chr5A 90.909 1034 61 15 1045 2056 52485071 52484049 0.000000e+00 1358.0
13 TraesCS4D01G210900 chr6D 92.469 478 26 1 1 468 97586849 97586372 0.000000e+00 675.0
14 TraesCS4D01G210900 chr6D 93.208 265 8 1 1 255 159027774 159027510 7.040000e-102 381.0
15 TraesCS4D01G210900 chr3D 92.308 481 27 1 1 471 350582797 350583277 0.000000e+00 675.0
16 TraesCS4D01G210900 chr3D 82.877 438 63 7 36 471 368851795 368851368 1.960000e-102 383.0
17 TraesCS4D01G210900 chr3D 92.941 255 16 1 1 255 306080348 306080096 1.520000e-98 370.0
18 TraesCS4D01G210900 chr3A 91.268 481 32 1 1 471 568530288 568530768 0.000000e+00 647.0
19 TraesCS4D01G210900 chr2D 90.437 481 34 3 1 471 158247127 158247605 1.060000e-174 623.0
20 TraesCS4D01G210900 chr1D 92.933 283 15 3 194 471 393695951 393695669 1.160000e-109 407.0
21 TraesCS4D01G210900 chr7D 93.798 258 13 1 1 255 342898696 342898953 5.440000e-103 385.0
22 TraesCS4D01G210900 chrUn 92.157 255 15 2 1 255 474646872 474646623 4.270000e-94 355.0
23 TraesCS4D01G210900 chr1B 100.000 34 0 0 1656 1689 536124041 536124074 2.900000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G210900 chr4D 363245743 363249218 3475 False 6420 6420 100.000 1 3476 1 chr4D.!!$F2 3475
1 TraesCS4D01G210900 chr4D 350265345 350265857 512 True 686 686 90.751 1048 1564 1 chr4D.!!$R2 516
2 TraesCS4D01G210900 chr4B 448801255 448804257 3002 False 4370 4370 93.101 488 3476 1 chr4B.!!$F1 2988
3 TraesCS4D01G210900 chr4A 102445208 102448202 2994 True 4008 4008 90.989 469 3476 1 chr4A.!!$R2 3007
4 TraesCS4D01G210900 chr5A 52484049 52485071 1022 True 1358 1358 90.909 1045 2056 1 chr5A.!!$R1 1011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.042188 CACACTACACTGTGCAACGC 60.042 55.0 7.9 0.0 42.39 4.84 F
1848 1910 0.030638 CGCCCACAACCAACTTCTTG 59.969 55.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1966 1.135286 CCGGCTGAAAAGGAATCAAGC 60.135 52.381 0.0 0.0 0.0 4.01 R
2975 3075 1.377366 TTTGCGTGCGAAGGTTCCAA 61.377 50.000 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.932663 ACAGAATGAACTGCCCGTG 58.067 52.632 0.00 0.00 39.69 4.94
19 20 0.396435 ACAGAATGAACTGCCCGTGA 59.604 50.000 0.00 0.00 39.69 4.35
20 21 1.202758 ACAGAATGAACTGCCCGTGAA 60.203 47.619 0.00 0.00 39.69 3.18
21 22 1.879380 CAGAATGAACTGCCCGTGAAA 59.121 47.619 0.00 0.00 39.69 2.69
22 23 1.880027 AGAATGAACTGCCCGTGAAAC 59.120 47.619 0.00 0.00 0.00 2.78
23 24 1.880027 GAATGAACTGCCCGTGAAACT 59.120 47.619 0.00 0.00 31.75 2.66
24 25 2.851263 ATGAACTGCCCGTGAAACTA 57.149 45.000 0.00 0.00 31.75 2.24
25 26 2.851263 TGAACTGCCCGTGAAACTAT 57.149 45.000 0.00 0.00 31.75 2.12
26 27 3.134574 TGAACTGCCCGTGAAACTATT 57.865 42.857 0.00 0.00 31.75 1.73
27 28 3.482436 TGAACTGCCCGTGAAACTATTT 58.518 40.909 0.00 0.00 31.75 1.40
28 29 3.500680 TGAACTGCCCGTGAAACTATTTC 59.499 43.478 0.00 0.00 40.08 2.17
29 30 3.134574 ACTGCCCGTGAAACTATTTCA 57.865 42.857 0.00 0.00 46.68 2.69
37 38 3.763097 TGAAACTATTTCATGCGGCTG 57.237 42.857 0.00 0.00 44.21 4.85
38 39 3.342719 TGAAACTATTTCATGCGGCTGA 58.657 40.909 0.00 0.00 44.21 4.26
39 40 3.126858 TGAAACTATTTCATGCGGCTGAC 59.873 43.478 0.00 0.00 44.21 3.51
40 41 1.668419 ACTATTTCATGCGGCTGACC 58.332 50.000 0.00 0.00 0.00 4.02
41 42 1.210478 ACTATTTCATGCGGCTGACCT 59.790 47.619 0.00 0.00 0.00 3.85
42 43 2.292267 CTATTTCATGCGGCTGACCTT 58.708 47.619 0.00 0.00 0.00 3.50
43 44 1.549203 ATTTCATGCGGCTGACCTTT 58.451 45.000 0.00 0.00 0.00 3.11
44 45 1.327303 TTTCATGCGGCTGACCTTTT 58.673 45.000 0.00 0.00 0.00 2.27
45 46 1.327303 TTCATGCGGCTGACCTTTTT 58.673 45.000 0.00 0.00 0.00 1.94
46 47 0.597568 TCATGCGGCTGACCTTTTTG 59.402 50.000 0.00 0.00 0.00 2.44
47 48 0.314935 CATGCGGCTGACCTTTTTGT 59.685 50.000 0.00 0.00 0.00 2.83
48 49 0.314935 ATGCGGCTGACCTTTTTGTG 59.685 50.000 0.00 0.00 0.00 3.33
49 50 1.034838 TGCGGCTGACCTTTTTGTGT 61.035 50.000 0.00 0.00 0.00 3.72
50 51 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
51 52 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
52 53 1.608590 CGGCTGACCTTTTTGTGTGAT 59.391 47.619 0.00 0.00 0.00 3.06
53 54 2.605338 CGGCTGACCTTTTTGTGTGATG 60.605 50.000 0.00 0.00 0.00 3.07
54 55 2.397549 GCTGACCTTTTTGTGTGATGC 58.602 47.619 0.00 0.00 0.00 3.91
55 56 2.863704 GCTGACCTTTTTGTGTGATGCC 60.864 50.000 0.00 0.00 0.00 4.40
56 57 1.686052 TGACCTTTTTGTGTGATGCCC 59.314 47.619 0.00 0.00 0.00 5.36
57 58 0.673437 ACCTTTTTGTGTGATGCCCG 59.327 50.000 0.00 0.00 0.00 6.13
58 59 0.958091 CCTTTTTGTGTGATGCCCGA 59.042 50.000 0.00 0.00 0.00 5.14
59 60 1.335872 CCTTTTTGTGTGATGCCCGAC 60.336 52.381 0.00 0.00 0.00 4.79
60 61 1.336440 CTTTTTGTGTGATGCCCGACA 59.664 47.619 0.00 0.00 0.00 4.35
61 62 0.665835 TTTTGTGTGATGCCCGACAC 59.334 50.000 0.00 0.00 42.40 3.67
62 63 1.502990 TTTGTGTGATGCCCGACACG 61.503 55.000 0.00 0.00 44.55 4.49
63 64 2.048597 GTGTGATGCCCGACACGA 60.049 61.111 0.00 0.00 39.52 4.35
64 65 1.666553 GTGTGATGCCCGACACGAA 60.667 57.895 0.00 0.00 39.52 3.85
65 66 1.374125 TGTGATGCCCGACACGAAG 60.374 57.895 0.00 0.00 39.52 3.79
66 67 2.100631 GTGATGCCCGACACGAAGG 61.101 63.158 0.00 0.00 0.00 3.46
74 75 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
75 76 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
76 77 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
77 78 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
78 79 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
79 80 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
80 81 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
81 82 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
82 83 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
83 84 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
84 85 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
85 86 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
86 87 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
87 88 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
88 89 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
89 90 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
90 91 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
91 92 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
92 93 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
93 94 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
94 95 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
95 96 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
97 98 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
98 99 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
99 100 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
100 101 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
101 102 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
107 108 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
108 109 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
109 110 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
134 135 3.842126 CAGCGTCGCATCCGTGTG 61.842 66.667 21.09 2.74 37.19 3.82
135 136 4.050934 AGCGTCGCATCCGTGTGA 62.051 61.111 21.09 0.00 42.28 3.58
136 137 2.885644 GCGTCGCATCCGTGTGAT 60.886 61.111 13.44 0.00 45.74 3.06
137 138 2.860628 GCGTCGCATCCGTGTGATC 61.861 63.158 13.44 0.00 45.74 2.92
138 139 2.230940 CGTCGCATCCGTGTGATCC 61.231 63.158 0.00 0.00 45.74 3.36
139 140 2.104132 TCGCATCCGTGTGATCCG 59.896 61.111 0.00 0.00 39.80 4.18
140 141 2.104132 CGCATCCGTGTGATCCGA 59.896 61.111 0.00 0.00 36.74 4.55
141 142 1.518352 CGCATCCGTGTGATCCGAA 60.518 57.895 0.00 0.00 36.74 4.30
142 143 1.081556 CGCATCCGTGTGATCCGAAA 61.082 55.000 0.00 0.00 36.74 3.46
143 144 1.083489 GCATCCGTGTGATCCGAAAA 58.917 50.000 0.00 0.00 0.00 2.29
144 145 1.670811 GCATCCGTGTGATCCGAAAAT 59.329 47.619 0.00 0.00 0.00 1.82
145 146 2.097466 GCATCCGTGTGATCCGAAAATT 59.903 45.455 0.00 0.00 0.00 1.82
146 147 3.311322 GCATCCGTGTGATCCGAAAATTA 59.689 43.478 0.00 0.00 0.00 1.40
147 148 4.785341 GCATCCGTGTGATCCGAAAATTAC 60.785 45.833 0.00 0.00 0.00 1.89
148 149 4.196626 TCCGTGTGATCCGAAAATTACT 57.803 40.909 0.00 0.00 0.00 2.24
149 150 5.327616 TCCGTGTGATCCGAAAATTACTA 57.672 39.130 0.00 0.00 0.00 1.82
150 151 5.722263 TCCGTGTGATCCGAAAATTACTAA 58.278 37.500 0.00 0.00 0.00 2.24
151 152 5.808540 TCCGTGTGATCCGAAAATTACTAAG 59.191 40.000 0.00 0.00 0.00 2.18
152 153 5.579511 CCGTGTGATCCGAAAATTACTAAGT 59.420 40.000 0.00 0.00 0.00 2.24
153 154 6.237755 CCGTGTGATCCGAAAATTACTAAGTC 60.238 42.308 0.00 0.00 0.00 3.01
154 155 6.309494 CGTGTGATCCGAAAATTACTAAGTCA 59.691 38.462 0.00 0.00 0.00 3.41
155 156 7.462856 CGTGTGATCCGAAAATTACTAAGTCAG 60.463 40.741 0.00 0.00 0.00 3.51
156 157 7.331193 GTGTGATCCGAAAATTACTAAGTCAGT 59.669 37.037 0.00 0.00 41.62 3.41
157 158 7.330946 TGTGATCCGAAAATTACTAAGTCAGTG 59.669 37.037 0.00 0.00 38.24 3.66
158 159 7.331193 GTGATCCGAAAATTACTAAGTCAGTGT 59.669 37.037 0.00 0.00 38.24 3.55
159 160 7.330946 TGATCCGAAAATTACTAAGTCAGTGTG 59.669 37.037 0.00 0.00 38.24 3.82
160 161 5.407387 TCCGAAAATTACTAAGTCAGTGTGC 59.593 40.000 0.00 0.00 38.24 4.57
161 162 5.178623 CCGAAAATTACTAAGTCAGTGTGCA 59.821 40.000 0.00 0.00 38.24 4.57
162 163 6.299604 CGAAAATTACTAAGTCAGTGTGCAG 58.700 40.000 0.00 0.00 38.24 4.41
163 164 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
164 165 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
165 166 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
166 167 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
167 168 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
168 169 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
169 170 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
170 171 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
171 172 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
172 173 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
173 174 3.619767 TGTGCAGCGCCTGAGAGT 61.620 61.111 2.29 0.00 32.44 3.24
174 175 2.358003 GTGCAGCGCCTGAGAGTT 60.358 61.111 2.29 0.00 32.44 3.01
175 176 1.079819 GTGCAGCGCCTGAGAGTTA 60.080 57.895 2.29 0.00 32.44 2.24
176 177 1.080995 GTGCAGCGCCTGAGAGTTAG 61.081 60.000 2.29 0.00 32.44 2.34
177 178 1.520342 GCAGCGCCTGAGAGTTAGG 60.520 63.158 2.29 0.00 38.39 2.69
182 183 3.298958 CCTGAGAGTTAGGCGCCA 58.701 61.111 31.54 12.31 0.00 5.69
183 184 1.153549 CCTGAGAGTTAGGCGCCAC 60.154 63.158 31.54 19.69 0.00 5.01
184 185 1.591703 CTGAGAGTTAGGCGCCACA 59.408 57.895 31.54 13.75 0.00 4.17
185 186 0.176680 CTGAGAGTTAGGCGCCACAT 59.823 55.000 31.54 11.17 0.00 3.21
186 187 1.409064 CTGAGAGTTAGGCGCCACATA 59.591 52.381 31.54 9.92 0.00 2.29
187 188 1.409064 TGAGAGTTAGGCGCCACATAG 59.591 52.381 31.54 0.00 0.00 2.23
188 189 0.105039 AGAGTTAGGCGCCACATAGC 59.895 55.000 31.54 14.60 0.00 2.97
208 209 2.979130 CCTAGCTTCTAGGCGTTGC 58.021 57.895 6.94 0.00 37.29 4.17
209 210 0.175760 CCTAGCTTCTAGGCGTTGCA 59.824 55.000 6.94 0.00 37.29 4.08
210 211 1.281899 CTAGCTTCTAGGCGTTGCAC 58.718 55.000 0.00 0.00 37.29 4.57
211 212 0.895530 TAGCTTCTAGGCGTTGCACT 59.104 50.000 0.00 0.00 37.29 4.40
212 213 0.895530 AGCTTCTAGGCGTTGCACTA 59.104 50.000 0.00 0.00 37.29 2.74
213 214 1.134965 AGCTTCTAGGCGTTGCACTAG 60.135 52.381 3.29 3.29 38.38 2.57
214 215 1.281899 CTTCTAGGCGTTGCACTAGC 58.718 55.000 4.58 2.00 37.26 3.42
215 216 0.457853 TTCTAGGCGTTGCACTAGCG 60.458 55.000 4.58 0.46 46.23 4.26
216 217 1.878522 CTAGGCGTTGCACTAGCGG 60.879 63.158 0.00 0.00 46.23 5.52
217 218 2.558554 CTAGGCGTTGCACTAGCGGT 62.559 60.000 0.00 0.00 46.23 5.68
218 219 2.162338 TAGGCGTTGCACTAGCGGTT 62.162 55.000 0.00 0.00 46.23 4.44
219 220 2.173382 GCGTTGCACTAGCGGTTG 59.827 61.111 0.00 0.00 46.23 3.77
220 221 2.173382 CGTTGCACTAGCGGTTGC 59.827 61.111 4.36 4.36 46.23 4.17
233 234 3.282831 GCGGTTGCTTCATTTTGTAGT 57.717 42.857 0.00 0.00 38.39 2.73
234 235 2.979813 GCGGTTGCTTCATTTTGTAGTG 59.020 45.455 0.00 0.00 38.39 2.74
235 236 2.979813 CGGTTGCTTCATTTTGTAGTGC 59.020 45.455 0.00 0.00 0.00 4.40
236 237 3.549827 CGGTTGCTTCATTTTGTAGTGCA 60.550 43.478 0.00 0.00 0.00 4.57
237 238 4.367450 GGTTGCTTCATTTTGTAGTGCAA 58.633 39.130 0.00 0.00 36.74 4.08
239 240 3.976169 TGCTTCATTTTGTAGTGCAACC 58.024 40.909 0.00 0.00 37.80 3.77
240 241 3.382865 TGCTTCATTTTGTAGTGCAACCA 59.617 39.130 0.00 0.00 37.80 3.67
241 242 4.039004 TGCTTCATTTTGTAGTGCAACCAT 59.961 37.500 0.00 0.00 37.80 3.55
242 243 4.990426 GCTTCATTTTGTAGTGCAACCATT 59.010 37.500 0.00 0.00 37.80 3.16
243 244 6.155827 GCTTCATTTTGTAGTGCAACCATTA 58.844 36.000 0.00 0.00 37.80 1.90
244 245 6.308766 GCTTCATTTTGTAGTGCAACCATTAG 59.691 38.462 0.00 0.00 37.80 1.73
245 246 6.892658 TCATTTTGTAGTGCAACCATTAGT 57.107 33.333 0.00 0.00 37.80 2.24
246 247 6.676950 TCATTTTGTAGTGCAACCATTAGTG 58.323 36.000 0.00 0.00 37.80 2.74
247 248 4.497473 TTTGTAGTGCAACCATTAGTGC 57.503 40.909 0.00 0.00 37.80 4.40
248 249 3.133141 TGTAGTGCAACCATTAGTGCA 57.867 42.857 0.00 0.00 37.80 4.57
249 250 3.073678 TGTAGTGCAACCATTAGTGCAG 58.926 45.455 0.00 0.00 37.80 4.41
250 251 0.883833 AGTGCAACCATTAGTGCAGC 59.116 50.000 0.00 0.00 37.80 5.25
251 252 0.454957 GTGCAACCATTAGTGCAGCG 60.455 55.000 0.00 0.00 34.56 5.18
252 253 1.514873 GCAACCATTAGTGCAGCGC 60.515 57.895 0.00 0.00 0.00 5.92
253 254 1.137404 CAACCATTAGTGCAGCGCC 59.863 57.895 2.29 0.00 0.00 6.53
254 255 1.002134 AACCATTAGTGCAGCGCCT 60.002 52.632 2.29 0.00 0.00 5.52
255 256 0.251916 AACCATTAGTGCAGCGCCTA 59.748 50.000 2.29 0.00 0.00 3.93
256 257 0.251916 ACCATTAGTGCAGCGCCTAA 59.748 50.000 2.29 4.90 0.00 2.69
257 258 0.657840 CCATTAGTGCAGCGCCTAAC 59.342 55.000 2.29 0.00 29.41 2.34
258 259 1.656652 CATTAGTGCAGCGCCTAACT 58.343 50.000 2.29 7.81 29.41 2.24
259 260 1.594862 CATTAGTGCAGCGCCTAACTC 59.405 52.381 2.29 0.00 29.41 3.01
260 261 0.895530 TTAGTGCAGCGCCTAACTCT 59.104 50.000 2.29 0.00 0.00 3.24
261 262 0.895530 TAGTGCAGCGCCTAACTCTT 59.104 50.000 2.29 0.00 0.00 2.85
262 263 0.895530 AGTGCAGCGCCTAACTCTTA 59.104 50.000 2.29 0.00 0.00 2.10
263 264 1.134965 AGTGCAGCGCCTAACTCTTAG 60.135 52.381 2.29 0.00 0.00 2.18
272 273 3.172229 CCTAACTCTTAGGCTCTGCAC 57.828 52.381 0.00 0.00 45.72 4.57
273 274 2.497675 CCTAACTCTTAGGCTCTGCACA 59.502 50.000 0.00 0.00 45.72 4.57
274 275 3.055819 CCTAACTCTTAGGCTCTGCACAA 60.056 47.826 0.00 0.00 45.72 3.33
275 276 3.710209 AACTCTTAGGCTCTGCACAAT 57.290 42.857 0.00 0.00 0.00 2.71
276 277 2.983229 ACTCTTAGGCTCTGCACAATG 58.017 47.619 0.00 0.00 0.00 2.82
277 278 2.568956 ACTCTTAGGCTCTGCACAATGA 59.431 45.455 0.00 0.00 0.00 2.57
278 279 2.935201 CTCTTAGGCTCTGCACAATGAC 59.065 50.000 0.00 0.00 0.00 3.06
279 280 2.568956 TCTTAGGCTCTGCACAATGACT 59.431 45.455 0.00 0.00 0.00 3.41
280 281 3.008375 TCTTAGGCTCTGCACAATGACTT 59.992 43.478 0.00 0.00 0.00 3.01
281 282 4.222810 TCTTAGGCTCTGCACAATGACTTA 59.777 41.667 0.00 0.00 0.00 2.24
282 283 2.983229 AGGCTCTGCACAATGACTTAG 58.017 47.619 0.00 0.00 0.00 2.18
283 284 1.399791 GGCTCTGCACAATGACTTAGC 59.600 52.381 0.00 0.00 0.00 3.09
284 285 2.079158 GCTCTGCACAATGACTTAGCA 58.921 47.619 0.00 0.00 0.00 3.49
285 286 2.485426 GCTCTGCACAATGACTTAGCAA 59.515 45.455 0.00 0.00 34.45 3.91
286 287 3.128242 GCTCTGCACAATGACTTAGCAAT 59.872 43.478 0.00 0.00 34.45 3.56
287 288 4.380233 GCTCTGCACAATGACTTAGCAATT 60.380 41.667 0.00 0.00 34.45 2.32
288 289 5.706916 CTCTGCACAATGACTTAGCAATTT 58.293 37.500 0.00 0.00 34.45 1.82
289 290 6.088016 TCTGCACAATGACTTAGCAATTTT 57.912 33.333 0.00 0.00 34.45 1.82
290 291 6.514947 TCTGCACAATGACTTAGCAATTTTT 58.485 32.000 0.00 0.00 34.45 1.94
291 292 7.656412 TCTGCACAATGACTTAGCAATTTTTA 58.344 30.769 0.00 0.00 34.45 1.52
292 293 7.809331 TCTGCACAATGACTTAGCAATTTTTAG 59.191 33.333 0.00 0.00 34.45 1.85
293 294 6.867816 TGCACAATGACTTAGCAATTTTTAGG 59.132 34.615 0.00 0.00 31.42 2.69
294 295 6.183360 GCACAATGACTTAGCAATTTTTAGGC 60.183 38.462 0.00 0.00 0.00 3.93
295 296 6.867816 CACAATGACTTAGCAATTTTTAGGCA 59.132 34.615 0.00 0.00 0.00 4.75
296 297 7.062605 CACAATGACTTAGCAATTTTTAGGCAG 59.937 37.037 0.00 0.00 0.00 4.85
297 298 6.840780 ATGACTTAGCAATTTTTAGGCAGT 57.159 33.333 0.00 0.00 0.00 4.40
298 299 6.254281 TGACTTAGCAATTTTTAGGCAGTC 57.746 37.500 0.00 0.00 33.59 3.51
299 300 6.003950 TGACTTAGCAATTTTTAGGCAGTCT 58.996 36.000 0.00 0.00 33.92 3.24
300 301 6.072508 TGACTTAGCAATTTTTAGGCAGTCTG 60.073 38.462 0.00 0.00 33.92 3.51
301 302 5.183904 ACTTAGCAATTTTTAGGCAGTCTGG 59.816 40.000 1.14 0.00 0.00 3.86
302 303 2.827921 AGCAATTTTTAGGCAGTCTGGG 59.172 45.455 1.14 0.00 0.00 4.45
303 304 2.094026 GCAATTTTTAGGCAGTCTGGGG 60.094 50.000 1.14 0.00 0.00 4.96
304 305 3.165071 CAATTTTTAGGCAGTCTGGGGT 58.835 45.455 1.14 0.00 0.00 4.95
305 306 2.286365 TTTTTAGGCAGTCTGGGGTG 57.714 50.000 1.14 0.00 0.00 4.61
306 307 0.251165 TTTTAGGCAGTCTGGGGTGC 60.251 55.000 1.14 0.00 39.08 5.01
307 308 1.422977 TTTAGGCAGTCTGGGGTGCA 61.423 55.000 1.14 0.00 41.75 4.57
308 309 1.422977 TTAGGCAGTCTGGGGTGCAA 61.423 55.000 1.14 0.00 41.75 4.08
309 310 2.124507 TAGGCAGTCTGGGGTGCAAC 62.125 60.000 1.14 0.00 41.75 4.17
310 311 3.357079 GCAGTCTGGGGTGCAACG 61.357 66.667 1.14 0.00 39.62 4.10
338 339 2.873367 CGTGTAGCGCCTATCTGTG 58.127 57.895 2.29 0.00 0.00 3.66
339 340 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
340 341 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
341 342 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
347 348 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
348 349 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
349 350 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
350 351 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
352 353 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
353 354 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
354 355 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
355 356 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
356 357 0.179070 TGAGGCGTTGCACAGTGTAA 60.179 50.000 0.00 0.00 0.00 2.41
357 358 1.156736 GAGGCGTTGCACAGTGTAAT 58.843 50.000 7.39 0.00 0.00 1.89
358 359 0.874390 AGGCGTTGCACAGTGTAATG 59.126 50.000 16.94 16.94 33.06 1.90
359 360 0.591170 GGCGTTGCACAGTGTAATGT 59.409 50.000 20.76 0.00 32.60 2.71
369 370 2.475111 ACAGTGTAATGTGACGCTTTCG 59.525 45.455 0.00 0.00 38.10 3.46
379 380 2.581409 CGCTTTCGTATCGGGCGT 60.581 61.111 0.00 0.00 40.78 5.68
380 381 2.574222 CGCTTTCGTATCGGGCGTC 61.574 63.158 0.00 0.00 40.78 5.19
381 382 1.517694 GCTTTCGTATCGGGCGTCA 60.518 57.895 0.00 0.00 0.00 4.35
382 383 1.749609 GCTTTCGTATCGGGCGTCAC 61.750 60.000 0.00 0.00 0.00 3.67
383 384 0.457166 CTTTCGTATCGGGCGTCACA 60.457 55.000 0.00 0.00 0.00 3.58
384 385 0.733566 TTTCGTATCGGGCGTCACAC 60.734 55.000 0.00 0.00 0.00 3.82
385 386 1.864725 TTCGTATCGGGCGTCACACA 61.865 55.000 0.00 0.00 0.00 3.72
386 387 1.444724 CGTATCGGGCGTCACACAA 60.445 57.895 0.00 0.00 0.00 3.33
387 388 1.009903 CGTATCGGGCGTCACACAAA 61.010 55.000 0.00 0.00 0.00 2.83
388 389 1.149987 GTATCGGGCGTCACACAAAA 58.850 50.000 0.00 0.00 0.00 2.44
389 390 1.532007 GTATCGGGCGTCACACAAAAA 59.468 47.619 0.00 0.00 0.00 1.94
390 391 0.591170 ATCGGGCGTCACACAAAAAG 59.409 50.000 0.00 0.00 0.00 2.27
391 392 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
392 393 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
393 394 1.310904 GGGCGTCACACAAAAAGGTA 58.689 50.000 0.00 0.00 0.00 3.08
394 395 1.677052 GGGCGTCACACAAAAAGGTAA 59.323 47.619 0.00 0.00 0.00 2.85
395 396 2.099427 GGGCGTCACACAAAAAGGTAAA 59.901 45.455 0.00 0.00 0.00 2.01
396 397 3.110358 GGCGTCACACAAAAAGGTAAAC 58.890 45.455 0.00 0.00 0.00 2.01
397 398 3.110358 GCGTCACACAAAAAGGTAAACC 58.890 45.455 0.00 0.00 0.00 3.27
398 399 3.356145 CGTCACACAAAAAGGTAAACCG 58.644 45.455 0.00 0.00 42.08 4.44
399 400 3.110358 GTCACACAAAAAGGTAAACCGC 58.890 45.455 0.00 0.00 42.08 5.68
400 401 2.113289 CACACAAAAAGGTAAACCGCG 58.887 47.619 0.00 0.00 42.08 6.46
401 402 1.744522 ACACAAAAAGGTAAACCGCGT 59.255 42.857 4.92 0.00 42.08 6.01
402 403 2.113289 CACAAAAAGGTAAACCGCGTG 58.887 47.619 4.92 0.00 42.08 5.34
403 404 2.015587 ACAAAAAGGTAAACCGCGTGA 58.984 42.857 4.92 0.00 42.08 4.35
404 405 2.422832 ACAAAAAGGTAAACCGCGTGAA 59.577 40.909 4.92 0.00 42.08 3.18
405 406 3.119566 ACAAAAAGGTAAACCGCGTGAAA 60.120 39.130 4.92 0.00 42.08 2.69
406 407 3.994204 AAAAGGTAAACCGCGTGAAAT 57.006 38.095 4.92 0.00 42.08 2.17
407 408 5.213675 CAAAAAGGTAAACCGCGTGAAATA 58.786 37.500 4.92 0.00 42.08 1.40
408 409 4.673534 AAAGGTAAACCGCGTGAAATAG 57.326 40.909 4.92 0.00 42.08 1.73
409 410 3.323751 AGGTAAACCGCGTGAAATAGT 57.676 42.857 4.92 0.00 42.08 2.12
410 411 3.667360 AGGTAAACCGCGTGAAATAGTT 58.333 40.909 4.92 0.00 42.08 2.24
411 412 4.067192 AGGTAAACCGCGTGAAATAGTTT 58.933 39.130 4.92 8.93 42.08 2.66
412 413 4.152938 AGGTAAACCGCGTGAAATAGTTTC 59.847 41.667 4.92 1.45 42.08 2.78
413 414 4.083908 GGTAAACCGCGTGAAATAGTTTCA 60.084 41.667 4.92 1.24 46.68 2.69
423 424 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
424 425 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
425 426 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
426 427 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
427 428 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
428 429 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
429 430 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
431 432 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
433 434 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
434 435 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
435 436 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
436 437 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
437 438 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
438 439 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
439 440 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
440 441 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
441 442 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
442 443 7.080099 ACAGTTCATTCTGTGATTTGATTTCG 58.920 34.615 0.00 0.00 45.40 3.46
443 444 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
444 445 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
445 446 6.182039 TCATTCTGTGATTTGATTTCGTCC 57.818 37.500 0.00 0.00 0.00 4.79
446 447 5.704978 TCATTCTGTGATTTGATTTCGTCCA 59.295 36.000 0.00 0.00 0.00 4.02
447 448 5.356882 TTCTGTGATTTGATTTCGTCCAC 57.643 39.130 0.00 0.00 0.00 4.02
448 449 4.384940 TCTGTGATTTGATTTCGTCCACA 58.615 39.130 0.00 0.00 0.00 4.17
449 450 4.452114 TCTGTGATTTGATTTCGTCCACAG 59.548 41.667 0.00 0.00 46.55 3.66
450 451 3.501828 TGTGATTTGATTTCGTCCACAGG 59.498 43.478 0.00 0.00 0.00 4.00
451 452 3.502211 GTGATTTGATTTCGTCCACAGGT 59.498 43.478 0.00 0.00 0.00 4.00
452 453 3.751175 TGATTTGATTTCGTCCACAGGTC 59.249 43.478 0.00 0.00 0.00 3.85
453 454 2.920724 TTGATTTCGTCCACAGGTCA 57.079 45.000 0.00 0.00 0.00 4.02
454 455 2.920724 TGATTTCGTCCACAGGTCAA 57.079 45.000 0.00 0.00 0.00 3.18
455 456 3.417069 TGATTTCGTCCACAGGTCAAT 57.583 42.857 0.00 0.00 0.00 2.57
456 457 3.750371 TGATTTCGTCCACAGGTCAATT 58.250 40.909 0.00 0.00 0.00 2.32
457 458 4.141287 TGATTTCGTCCACAGGTCAATTT 58.859 39.130 0.00 0.00 0.00 1.82
458 459 4.582656 TGATTTCGTCCACAGGTCAATTTT 59.417 37.500 0.00 0.00 0.00 1.82
459 460 3.980646 TTCGTCCACAGGTCAATTTTG 57.019 42.857 0.00 0.00 0.00 2.44
460 461 2.925724 TCGTCCACAGGTCAATTTTGT 58.074 42.857 0.00 0.00 0.00 2.83
461 462 2.875933 TCGTCCACAGGTCAATTTTGTC 59.124 45.455 0.00 0.00 0.00 3.18
462 463 2.616376 CGTCCACAGGTCAATTTTGTCA 59.384 45.455 0.00 0.00 0.00 3.58
463 464 3.066064 CGTCCACAGGTCAATTTTGTCAA 59.934 43.478 0.00 0.00 0.00 3.18
464 465 4.439426 CGTCCACAGGTCAATTTTGTCAAA 60.439 41.667 0.00 0.00 0.00 2.69
465 466 5.600696 GTCCACAGGTCAATTTTGTCAAAT 58.399 37.500 0.00 0.00 33.72 2.32
466 467 6.048509 GTCCACAGGTCAATTTTGTCAAATT 58.951 36.000 0.00 0.00 42.37 1.82
467 468 6.538381 GTCCACAGGTCAATTTTGTCAAATTT 59.462 34.615 0.00 0.00 40.09 1.82
498 499 4.785453 CCCTTGCCTCCTCCACGC 62.785 72.222 0.00 0.00 0.00 5.34
501 502 4.680237 TTGCCTCCTCCACGCGTG 62.680 66.667 31.77 31.77 0.00 5.34
558 559 2.278596 CCGCATCGTCCACGTAGG 60.279 66.667 0.00 0.00 40.80 3.18
564 565 3.379445 CGTCCACGTAGGCCTGGT 61.379 66.667 17.99 10.85 37.29 4.00
567 568 4.143333 CCACGTAGGCCTGGTCCG 62.143 72.222 17.99 14.57 0.00 4.79
572 573 4.371417 TAGGCCTGGTCCGTCCGT 62.371 66.667 17.99 0.00 39.52 4.69
615 616 4.961511 GCACACGTGTCTCCGCCA 62.962 66.667 20.49 0.00 0.00 5.69
918 950 0.464013 TTTGCCAAACGTCGGAGGAA 60.464 50.000 8.11 0.00 0.00 3.36
970 1009 5.351458 CCTGCTCTAGCTTGTTTTTGTTTT 58.649 37.500 3.26 0.00 42.66 2.43
1353 1399 1.424493 GCTCGCATGTGAGTGCCTAC 61.424 60.000 31.23 14.21 42.06 3.18
1354 1400 0.174389 CTCGCATGTGAGTGCCTACT 59.826 55.000 25.11 0.00 42.06 2.57
1366 1412 4.701333 AGTGCCTACTCATATATCCCCT 57.299 45.455 0.00 0.00 28.79 4.79
1367 1413 4.357325 AGTGCCTACTCATATATCCCCTG 58.643 47.826 0.00 0.00 28.79 4.45
1443 1496 1.499056 GCATGTGCAGGTCGAACTG 59.501 57.895 26.35 26.35 41.59 3.16
1848 1910 0.030638 CGCCCACAACCAACTTCTTG 59.969 55.000 0.00 0.00 0.00 3.02
1859 1924 2.485814 CCAACTTCTTGTAAGCTCTGCC 59.514 50.000 0.00 0.00 0.00 4.85
1862 1927 3.820557 ACTTCTTGTAAGCTCTGCCAAA 58.179 40.909 0.00 0.00 0.00 3.28
1863 1928 3.817647 ACTTCTTGTAAGCTCTGCCAAAG 59.182 43.478 0.00 0.00 0.00 2.77
1865 1930 4.292186 TCTTGTAAGCTCTGCCAAAGAT 57.708 40.909 0.00 0.00 33.29 2.40
1866 1931 4.655963 TCTTGTAAGCTCTGCCAAAGATT 58.344 39.130 0.00 0.00 33.29 2.40
1867 1932 5.072741 TCTTGTAAGCTCTGCCAAAGATTT 58.927 37.500 0.00 0.00 33.29 2.17
1868 1933 6.237901 TCTTGTAAGCTCTGCCAAAGATTTA 58.762 36.000 0.00 0.00 33.29 1.40
1869 1934 5.880054 TGTAAGCTCTGCCAAAGATTTAC 57.120 39.130 0.00 0.00 36.42 2.01
1870 1935 5.312895 TGTAAGCTCTGCCAAAGATTTACA 58.687 37.500 0.00 7.78 39.77 2.41
1871 1936 5.945784 TGTAAGCTCTGCCAAAGATTTACAT 59.054 36.000 0.00 0.00 38.56 2.29
1879 1944 4.037446 TGCCAAAGATTTACATATTCCGGC 59.963 41.667 0.00 0.00 34.68 6.13
1894 1959 1.067635 TCCGGCTTGTTCTAACCGTAC 60.068 52.381 0.00 0.00 44.14 3.67
1895 1960 0.986992 CGGCTTGTTCTAACCGTACG 59.013 55.000 8.69 8.69 40.77 3.67
1896 1961 1.666888 CGGCTTGTTCTAACCGTACGT 60.667 52.381 15.21 0.00 40.77 3.57
1897 1962 1.723003 GGCTTGTTCTAACCGTACGTG 59.277 52.381 15.21 8.32 0.00 4.49
1898 1963 2.397549 GCTTGTTCTAACCGTACGTGT 58.602 47.619 15.21 8.99 0.00 4.49
1899 1964 2.406357 GCTTGTTCTAACCGTACGTGTC 59.594 50.000 15.21 0.79 0.00 3.67
1900 1965 3.854784 GCTTGTTCTAACCGTACGTGTCT 60.855 47.826 15.21 5.86 0.00 3.41
1901 1966 3.272439 TGTTCTAACCGTACGTGTCTG 57.728 47.619 15.21 0.29 0.00 3.51
1902 1967 1.981533 GTTCTAACCGTACGTGTCTGC 59.018 52.381 15.21 0.00 0.00 4.26
1910 1975 1.654105 CGTACGTGTCTGCTTGATTCC 59.346 52.381 7.22 0.00 0.00 3.01
2094 2162 2.128507 GGAGAGGAAGGACGGCGAT 61.129 63.158 16.62 0.00 0.00 4.58
2151 2219 2.022129 CGTGGTGAGCAACGAGGTC 61.022 63.158 0.00 0.00 44.42 3.85
2238 2306 1.920325 CTCCAACCTGAGCCCCAGA 60.920 63.158 5.38 0.00 45.78 3.86
2301 2369 2.342648 GAAGCCCAGAACGACGGT 59.657 61.111 0.00 0.00 0.00 4.83
2364 2432 3.379445 GGCGAGGAGGTGGACGAA 61.379 66.667 0.00 0.00 0.00 3.85
2520 2594 3.769844 ACCAAACTATCGTCTGTGATCCT 59.230 43.478 0.00 0.00 0.00 3.24
2541 2615 2.434884 CTCAGCGGCGAACATGGT 60.435 61.111 12.98 0.00 0.00 3.55
2612 2686 2.600470 GGGGTGGCAAAGGTGGTC 60.600 66.667 0.00 0.00 0.00 4.02
2738 2821 2.024176 ATCCGGTGGAAACGATCAAG 57.976 50.000 0.00 0.00 34.34 3.02
2759 2850 2.029290 GGCTTCCATTCCATGCATGATC 60.029 50.000 28.31 1.45 0.00 2.92
2767 2859 3.799432 TCCATGCATGATCCATCATCA 57.201 42.857 28.31 2.51 45.23 3.07
2787 2879 2.552599 TCCTCTGACTAGATCGCGAT 57.447 50.000 23.97 23.97 31.21 4.58
2854 2954 2.307049 CGCAATTGTGAGGTTCGTTTC 58.693 47.619 13.88 0.00 0.00 2.78
2869 2969 4.946266 TTCGACGCGTCCGGCAAA 62.946 61.111 31.84 15.87 44.71 3.68
2885 2985 0.519175 CAAAGAGAATCGGTTGCGCG 60.519 55.000 0.00 0.00 42.67 6.86
2975 3075 3.487376 CGCATTGTTAATTCAGCATCCGT 60.487 43.478 0.00 0.00 0.00 4.69
3133 3233 3.732892 CAACAAATCCGCGGGCGT 61.733 61.111 27.83 14.42 37.81 5.68
3193 3293 2.337532 CGACTTGACGACGGGGTT 59.662 61.111 0.00 0.00 35.09 4.11
3338 3438 1.669760 ATCTTTGGCCGCGTCGAAA 60.670 52.632 4.92 0.11 0.00 3.46
3471 3575 3.813724 GGTCCACTTTTACTTGTGAGGAC 59.186 47.826 0.00 0.00 36.38 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.396435 TCACGGGCAGTTCATTCTGT 59.604 50.000 0.00 0.00 37.70 3.41
1 2 1.522668 TTCACGGGCAGTTCATTCTG 58.477 50.000 0.00 0.00 38.35 3.02
2 3 1.880027 GTTTCACGGGCAGTTCATTCT 59.120 47.619 0.00 0.00 0.00 2.40
3 4 1.880027 AGTTTCACGGGCAGTTCATTC 59.120 47.619 0.00 0.00 0.00 2.67
4 5 1.981256 AGTTTCACGGGCAGTTCATT 58.019 45.000 0.00 0.00 0.00 2.57
5 6 2.851263 TAGTTTCACGGGCAGTTCAT 57.149 45.000 0.00 0.00 0.00 2.57
6 7 2.851263 ATAGTTTCACGGGCAGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
7 8 3.500680 TGAAATAGTTTCACGGGCAGTTC 59.499 43.478 1.24 0.00 44.21 3.01
8 9 3.482436 TGAAATAGTTTCACGGGCAGTT 58.518 40.909 1.24 0.00 44.21 3.16
9 10 3.134574 TGAAATAGTTTCACGGGCAGT 57.865 42.857 1.24 0.00 44.21 4.40
18 19 3.487544 GGTCAGCCGCATGAAATAGTTTC 60.488 47.826 0.00 0.00 40.08 2.78
19 20 2.423538 GGTCAGCCGCATGAAATAGTTT 59.576 45.455 0.00 0.00 0.00 2.66
20 21 2.017049 GGTCAGCCGCATGAAATAGTT 58.983 47.619 0.00 0.00 0.00 2.24
21 22 1.210478 AGGTCAGCCGCATGAAATAGT 59.790 47.619 0.00 0.00 40.50 2.12
22 23 1.959042 AGGTCAGCCGCATGAAATAG 58.041 50.000 0.00 0.00 40.50 1.73
23 24 2.418368 AAGGTCAGCCGCATGAAATA 57.582 45.000 0.00 0.00 40.50 1.40
24 25 1.549203 AAAGGTCAGCCGCATGAAAT 58.451 45.000 0.00 0.00 40.50 2.17
25 26 1.327303 AAAAGGTCAGCCGCATGAAA 58.673 45.000 0.00 0.00 40.50 2.69
26 27 1.000385 CAAAAAGGTCAGCCGCATGAA 60.000 47.619 0.00 0.00 40.50 2.57
27 28 0.597568 CAAAAAGGTCAGCCGCATGA 59.402 50.000 0.00 0.00 40.50 3.07
28 29 0.314935 ACAAAAAGGTCAGCCGCATG 59.685 50.000 0.00 0.00 40.50 4.06
29 30 0.314935 CACAAAAAGGTCAGCCGCAT 59.685 50.000 0.00 0.00 40.50 4.73
30 31 1.034838 ACACAAAAAGGTCAGCCGCA 61.035 50.000 0.00 0.00 40.50 5.69
31 32 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
32 33 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
33 34 2.863704 GCATCACACAAAAAGGTCAGCC 60.864 50.000 0.00 0.00 0.00 4.85
34 35 2.397549 GCATCACACAAAAAGGTCAGC 58.602 47.619 0.00 0.00 0.00 4.26
35 36 2.288395 GGGCATCACACAAAAAGGTCAG 60.288 50.000 0.00 0.00 0.00 3.51
36 37 1.686052 GGGCATCACACAAAAAGGTCA 59.314 47.619 0.00 0.00 0.00 4.02
37 38 1.335872 CGGGCATCACACAAAAAGGTC 60.336 52.381 0.00 0.00 0.00 3.85
38 39 0.673437 CGGGCATCACACAAAAAGGT 59.327 50.000 0.00 0.00 0.00 3.50
39 40 0.958091 TCGGGCATCACACAAAAAGG 59.042 50.000 0.00 0.00 0.00 3.11
40 41 1.336440 TGTCGGGCATCACACAAAAAG 59.664 47.619 0.00 0.00 0.00 2.27
41 42 1.066303 GTGTCGGGCATCACACAAAAA 59.934 47.619 7.69 0.00 42.20 1.94
42 43 0.665835 GTGTCGGGCATCACACAAAA 59.334 50.000 7.69 0.00 42.20 2.44
43 44 1.502990 CGTGTCGGGCATCACACAAA 61.503 55.000 11.79 0.00 42.67 2.83
44 45 1.958715 CGTGTCGGGCATCACACAA 60.959 57.895 11.79 0.00 42.67 3.33
45 46 2.356913 CGTGTCGGGCATCACACA 60.357 61.111 11.79 0.00 42.67 3.72
46 47 1.626654 CTTCGTGTCGGGCATCACAC 61.627 60.000 3.46 3.46 39.70 3.82
47 48 1.374125 CTTCGTGTCGGGCATCACA 60.374 57.895 0.00 0.00 34.66 3.58
48 49 2.100631 CCTTCGTGTCGGGCATCAC 61.101 63.158 0.00 0.00 0.00 3.06
49 50 2.264480 CCTTCGTGTCGGGCATCA 59.736 61.111 0.00 0.00 0.00 3.07
50 51 3.195698 GCCTTCGTGTCGGGCATC 61.196 66.667 0.00 0.00 44.69 3.91
57 58 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
58 59 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
59 60 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
60 61 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
61 62 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
62 63 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
63 64 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
64 65 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
65 66 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
66 67 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
67 68 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
68 69 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
69 70 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
71 72 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
72 73 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
73 74 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
74 75 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
75 76 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
76 77 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
77 78 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
78 79 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
80 81 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
81 82 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
82 83 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
83 84 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
89 90 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
90 91 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
91 92 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
92 93 2.873367 CGTGTAGCGCCTATCTGTG 58.127 57.895 2.29 0.00 0.00 3.66
117 118 3.842126 CACACGGATGCGACGCTG 61.842 66.667 22.08 12.79 34.00 5.18
118 119 3.356639 ATCACACGGATGCGACGCT 62.357 57.895 22.08 6.44 34.06 5.07
119 120 2.860628 GATCACACGGATGCGACGC 61.861 63.158 15.49 14.19 36.00 5.19
120 121 2.230940 GGATCACACGGATGCGACG 61.231 63.158 15.49 6.43 36.00 5.12
121 122 3.706140 GGATCACACGGATGCGAC 58.294 61.111 15.49 0.00 36.00 5.19
124 125 1.083489 TTTTCGGATCACACGGATGC 58.917 50.000 0.00 0.00 40.66 3.91
125 126 4.570772 AGTAATTTTCGGATCACACGGATG 59.429 41.667 0.00 0.00 36.00 3.51
126 127 4.766375 AGTAATTTTCGGATCACACGGAT 58.234 39.130 0.00 0.00 39.53 4.18
127 128 4.196626 AGTAATTTTCGGATCACACGGA 57.803 40.909 0.00 0.00 0.00 4.69
128 129 5.579511 ACTTAGTAATTTTCGGATCACACGG 59.420 40.000 0.00 0.00 0.00 4.94
129 130 6.309494 TGACTTAGTAATTTTCGGATCACACG 59.691 38.462 0.00 0.00 0.00 4.49
130 131 7.331193 ACTGACTTAGTAATTTTCGGATCACAC 59.669 37.037 0.00 0.00 38.04 3.82
131 132 7.330946 CACTGACTTAGTAATTTTCGGATCACA 59.669 37.037 0.00 0.00 37.60 3.58
132 133 7.331193 ACACTGACTTAGTAATTTTCGGATCAC 59.669 37.037 0.00 0.00 37.60 3.06
133 134 7.330946 CACACTGACTTAGTAATTTTCGGATCA 59.669 37.037 0.00 0.00 37.60 2.92
134 135 7.674240 GCACACTGACTTAGTAATTTTCGGATC 60.674 40.741 0.00 0.00 37.60 3.36
135 136 6.092259 GCACACTGACTTAGTAATTTTCGGAT 59.908 38.462 0.00 0.00 37.60 4.18
136 137 5.407387 GCACACTGACTTAGTAATTTTCGGA 59.593 40.000 0.00 0.00 37.60 4.55
137 138 5.178623 TGCACACTGACTTAGTAATTTTCGG 59.821 40.000 0.00 0.00 37.60 4.30
138 139 6.223138 TGCACACTGACTTAGTAATTTTCG 57.777 37.500 0.00 0.00 37.60 3.46
139 140 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
140 141 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
141 142 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
142 143 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
143 144 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
144 145 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
145 146 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
146 147 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
147 148 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
148 149 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
149 150 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
150 151 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
151 152 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
152 153 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
153 154 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
154 155 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
155 156 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
156 157 1.815817 TAACTCTCAGGCGCTGCACA 61.816 55.000 7.64 0.00 0.00 4.57
157 158 1.079819 TAACTCTCAGGCGCTGCAC 60.080 57.895 7.64 0.00 0.00 4.57
158 159 1.216444 CTAACTCTCAGGCGCTGCA 59.784 57.895 7.64 0.00 0.00 4.41
159 160 1.520342 CCTAACTCTCAGGCGCTGC 60.520 63.158 7.64 0.00 0.00 5.25
160 161 4.823276 CCTAACTCTCAGGCGCTG 57.177 61.111 7.64 3.67 0.00 5.18
165 166 1.153549 GTGGCGCCTAACTCTCAGG 60.154 63.158 29.70 0.00 36.16 3.86
166 167 0.176680 ATGTGGCGCCTAACTCTCAG 59.823 55.000 29.70 0.00 0.00 3.35
167 168 1.409064 CTATGTGGCGCCTAACTCTCA 59.591 52.381 29.70 14.55 0.00 3.27
168 169 1.870167 GCTATGTGGCGCCTAACTCTC 60.870 57.143 29.70 7.63 0.00 3.20
169 170 0.105039 GCTATGTGGCGCCTAACTCT 59.895 55.000 29.70 12.22 0.00 3.24
170 171 2.606275 GCTATGTGGCGCCTAACTC 58.394 57.895 29.70 12.94 0.00 3.01
171 172 4.857251 GCTATGTGGCGCCTAACT 57.143 55.556 29.70 12.15 0.00 2.24
190 191 0.175760 TGCAACGCCTAGAAGCTAGG 59.824 55.000 14.68 14.68 37.75 3.02
191 192 1.134965 AGTGCAACGCCTAGAAGCTAG 60.135 52.381 0.00 0.00 45.86 3.42
192 193 0.895530 AGTGCAACGCCTAGAAGCTA 59.104 50.000 0.00 0.00 45.86 3.32
193 194 0.895530 TAGTGCAACGCCTAGAAGCT 59.104 50.000 0.00 0.00 45.86 3.74
194 195 1.281899 CTAGTGCAACGCCTAGAAGC 58.718 55.000 3.56 0.00 45.86 3.86
195 196 1.281899 GCTAGTGCAACGCCTAGAAG 58.718 55.000 12.06 0.00 45.86 2.85
196 197 0.457853 CGCTAGTGCAACGCCTAGAA 60.458 55.000 12.06 0.00 45.86 2.10
197 198 1.138883 CGCTAGTGCAACGCCTAGA 59.861 57.895 12.06 0.00 45.86 2.43
198 199 1.878522 CCGCTAGTGCAACGCCTAG 60.879 63.158 0.00 5.02 45.86 3.02
199 200 2.162338 AACCGCTAGTGCAACGCCTA 62.162 55.000 0.00 0.00 45.86 3.93
200 201 3.530910 AACCGCTAGTGCAACGCCT 62.531 57.895 0.00 0.00 45.86 5.52
201 202 3.047877 AACCGCTAGTGCAACGCC 61.048 61.111 0.00 0.00 45.86 5.68
202 203 2.173382 CAACCGCTAGTGCAACGC 59.827 61.111 0.00 0.00 45.86 4.84
203 204 2.173382 GCAACCGCTAGTGCAACG 59.827 61.111 0.00 0.00 37.19 4.10
213 214 2.979813 CACTACAAAATGAAGCAACCGC 59.020 45.455 0.00 0.00 38.99 5.68
214 215 2.979813 GCACTACAAAATGAAGCAACCG 59.020 45.455 0.00 0.00 0.00 4.44
215 216 3.976169 TGCACTACAAAATGAAGCAACC 58.024 40.909 0.00 0.00 0.00 3.77
217 218 4.142071 TGGTTGCACTACAAAATGAAGCAA 60.142 37.500 0.00 0.00 40.82 3.91
218 219 3.382865 TGGTTGCACTACAAAATGAAGCA 59.617 39.130 0.00 0.00 40.82 3.91
219 220 3.976169 TGGTTGCACTACAAAATGAAGC 58.024 40.909 0.00 0.00 40.82 3.86
220 221 7.326789 CACTAATGGTTGCACTACAAAATGAAG 59.673 37.037 0.00 0.00 40.82 3.02
221 222 7.144661 CACTAATGGTTGCACTACAAAATGAA 58.855 34.615 0.00 0.00 40.82 2.57
222 223 6.676950 CACTAATGGTTGCACTACAAAATGA 58.323 36.000 0.00 0.00 40.82 2.57
223 224 5.345741 GCACTAATGGTTGCACTACAAAATG 59.654 40.000 0.00 0.00 40.82 2.32
224 225 5.010516 TGCACTAATGGTTGCACTACAAAAT 59.989 36.000 0.00 0.00 40.82 1.82
225 226 4.339530 TGCACTAATGGTTGCACTACAAAA 59.660 37.500 0.00 0.00 40.82 2.44
226 227 3.885901 TGCACTAATGGTTGCACTACAAA 59.114 39.130 0.00 0.00 40.82 2.83
227 228 3.481453 TGCACTAATGGTTGCACTACAA 58.519 40.909 0.00 0.00 35.33 2.41
228 229 3.073678 CTGCACTAATGGTTGCACTACA 58.926 45.455 0.00 0.00 32.03 2.74
229 230 2.159517 GCTGCACTAATGGTTGCACTAC 60.160 50.000 0.00 0.00 32.03 2.73
230 231 2.083774 GCTGCACTAATGGTTGCACTA 58.916 47.619 0.00 0.00 32.03 2.74
231 232 0.883833 GCTGCACTAATGGTTGCACT 59.116 50.000 0.00 0.00 32.03 4.40
232 233 0.454957 CGCTGCACTAATGGTTGCAC 60.455 55.000 0.00 0.00 32.03 4.57
233 234 1.875262 CGCTGCACTAATGGTTGCA 59.125 52.632 0.00 0.00 33.46 4.08
234 235 1.514873 GCGCTGCACTAATGGTTGC 60.515 57.895 0.00 0.00 0.00 4.17
235 236 1.137404 GGCGCTGCACTAATGGTTG 59.863 57.895 7.64 0.00 0.00 3.77
236 237 0.251916 TAGGCGCTGCACTAATGGTT 59.748 50.000 7.64 0.00 0.00 3.67
237 238 0.251916 TTAGGCGCTGCACTAATGGT 59.748 50.000 7.64 0.00 0.00 3.55
238 239 0.657840 GTTAGGCGCTGCACTAATGG 59.342 55.000 7.64 0.00 32.40 3.16
239 240 1.594862 GAGTTAGGCGCTGCACTAATG 59.405 52.381 7.64 0.00 32.40 1.90
240 241 1.482593 AGAGTTAGGCGCTGCACTAAT 59.517 47.619 7.64 6.47 32.40 1.73
241 242 0.895530 AGAGTTAGGCGCTGCACTAA 59.104 50.000 7.64 3.28 0.00 2.24
242 243 0.895530 AAGAGTTAGGCGCTGCACTA 59.104 50.000 7.64 0.00 0.00 2.74
243 244 0.895530 TAAGAGTTAGGCGCTGCACT 59.104 50.000 7.64 6.48 0.00 4.40
244 245 1.281899 CTAAGAGTTAGGCGCTGCAC 58.718 55.000 7.64 0.76 0.00 4.57
245 246 0.175760 CCTAAGAGTTAGGCGCTGCA 59.824 55.000 7.64 0.00 45.72 4.41
246 247 2.979130 CCTAAGAGTTAGGCGCTGC 58.021 57.895 7.64 0.00 45.72 5.25
253 254 3.876274 TGTGCAGAGCCTAAGAGTTAG 57.124 47.619 0.00 0.00 0.00 2.34
254 255 4.222810 TCATTGTGCAGAGCCTAAGAGTTA 59.777 41.667 0.00 0.00 0.00 2.24
255 256 3.008375 TCATTGTGCAGAGCCTAAGAGTT 59.992 43.478 0.00 0.00 0.00 3.01
256 257 2.568956 TCATTGTGCAGAGCCTAAGAGT 59.431 45.455 0.00 0.00 0.00 3.24
257 258 2.935201 GTCATTGTGCAGAGCCTAAGAG 59.065 50.000 0.00 0.00 0.00 2.85
258 259 2.568956 AGTCATTGTGCAGAGCCTAAGA 59.431 45.455 0.00 0.00 0.00 2.10
259 260 2.983229 AGTCATTGTGCAGAGCCTAAG 58.017 47.619 0.00 0.00 0.00 2.18
260 261 3.423539 AAGTCATTGTGCAGAGCCTAA 57.576 42.857 0.00 0.00 0.00 2.69
261 262 3.679917 GCTAAGTCATTGTGCAGAGCCTA 60.680 47.826 0.00 0.00 0.00 3.93
262 263 2.938756 GCTAAGTCATTGTGCAGAGCCT 60.939 50.000 0.00 0.00 0.00 4.58
263 264 1.399791 GCTAAGTCATTGTGCAGAGCC 59.600 52.381 0.00 0.00 0.00 4.70
264 265 2.079158 TGCTAAGTCATTGTGCAGAGC 58.921 47.619 0.00 0.00 0.00 4.09
265 266 4.959596 ATTGCTAAGTCATTGTGCAGAG 57.040 40.909 0.00 0.00 33.13 3.35
266 267 5.710513 AAATTGCTAAGTCATTGTGCAGA 57.289 34.783 0.00 0.00 33.13 4.26
267 268 6.774354 AAAAATTGCTAAGTCATTGTGCAG 57.226 33.333 0.00 0.00 33.13 4.41
268 269 6.867816 CCTAAAAATTGCTAAGTCATTGTGCA 59.132 34.615 0.00 0.00 0.00 4.57
269 270 6.183360 GCCTAAAAATTGCTAAGTCATTGTGC 60.183 38.462 0.00 0.00 0.00 4.57
270 271 6.867816 TGCCTAAAAATTGCTAAGTCATTGTG 59.132 34.615 0.00 0.00 0.00 3.33
271 272 6.991938 TGCCTAAAAATTGCTAAGTCATTGT 58.008 32.000 0.00 0.00 0.00 2.71
272 273 7.092716 ACTGCCTAAAAATTGCTAAGTCATTG 58.907 34.615 0.00 0.00 0.00 2.82
273 274 7.177392 AGACTGCCTAAAAATTGCTAAGTCATT 59.823 33.333 0.00 0.00 33.10 2.57
274 275 6.660949 AGACTGCCTAAAAATTGCTAAGTCAT 59.339 34.615 0.00 0.00 33.10 3.06
275 276 6.003950 AGACTGCCTAAAAATTGCTAAGTCA 58.996 36.000 0.00 0.00 33.10 3.41
276 277 6.317857 CAGACTGCCTAAAAATTGCTAAGTC 58.682 40.000 0.00 0.00 31.68 3.01
277 278 5.183904 CCAGACTGCCTAAAAATTGCTAAGT 59.816 40.000 0.00 0.00 0.00 2.24
278 279 5.393461 CCCAGACTGCCTAAAAATTGCTAAG 60.393 44.000 0.00 0.00 0.00 2.18
279 280 4.462483 CCCAGACTGCCTAAAAATTGCTAA 59.538 41.667 0.00 0.00 0.00 3.09
280 281 4.016444 CCCAGACTGCCTAAAAATTGCTA 58.984 43.478 0.00 0.00 0.00 3.49
281 282 2.827921 CCCAGACTGCCTAAAAATTGCT 59.172 45.455 0.00 0.00 0.00 3.91
282 283 2.094026 CCCCAGACTGCCTAAAAATTGC 60.094 50.000 0.00 0.00 0.00 3.56
283 284 3.056607 CACCCCAGACTGCCTAAAAATTG 60.057 47.826 0.00 0.00 0.00 2.32
284 285 3.165071 CACCCCAGACTGCCTAAAAATT 58.835 45.455 0.00 0.00 0.00 1.82
285 286 2.807676 CACCCCAGACTGCCTAAAAAT 58.192 47.619 0.00 0.00 0.00 1.82
286 287 1.821666 GCACCCCAGACTGCCTAAAAA 60.822 52.381 0.00 0.00 0.00 1.94
287 288 0.251165 GCACCCCAGACTGCCTAAAA 60.251 55.000 0.00 0.00 0.00 1.52
288 289 1.378762 GCACCCCAGACTGCCTAAA 59.621 57.895 0.00 0.00 0.00 1.85
289 290 1.422977 TTGCACCCCAGACTGCCTAA 61.423 55.000 0.00 0.00 31.97 2.69
290 291 1.845664 TTGCACCCCAGACTGCCTA 60.846 57.895 0.00 0.00 31.97 3.93
291 292 3.177884 TTGCACCCCAGACTGCCT 61.178 61.111 0.00 0.00 31.97 4.75
292 293 2.985847 GTTGCACCCCAGACTGCC 60.986 66.667 0.00 0.00 31.97 4.85
293 294 3.357079 CGTTGCACCCCAGACTGC 61.357 66.667 0.00 0.00 0.00 4.40
294 295 3.357079 GCGTTGCACCCCAGACTG 61.357 66.667 0.00 0.00 0.00 3.51
295 296 3.560251 AGCGTTGCACCCCAGACT 61.560 61.111 0.00 0.00 0.00 3.24
296 297 3.357079 CAGCGTTGCACCCCAGAC 61.357 66.667 0.00 0.00 0.00 3.51
297 298 4.641645 CCAGCGTTGCACCCCAGA 62.642 66.667 0.00 0.00 0.00 3.86
321 322 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
322 323 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
323 324 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
329 330 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
330 331 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
331 332 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
332 333 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
333 334 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
335 336 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
336 337 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
337 338 0.179070 TTACACTGTGCAACGCCTCA 60.179 50.000 7.90 0.00 42.39 3.86
338 339 1.135972 CATTACACTGTGCAACGCCTC 60.136 52.381 7.90 0.00 42.39 4.70
339 340 0.874390 CATTACACTGTGCAACGCCT 59.126 50.000 7.90 0.00 42.39 5.52
340 341 0.591170 ACATTACACTGTGCAACGCC 59.409 50.000 7.90 0.00 42.39 5.68
341 342 1.262950 TCACATTACACTGTGCAACGC 59.737 47.619 7.90 0.00 44.94 4.84
342 343 2.659023 CGTCACATTACACTGTGCAACG 60.659 50.000 7.90 0.00 44.94 4.10
343 344 2.903678 CGTCACATTACACTGTGCAAC 58.096 47.619 7.90 0.00 44.94 4.17
344 345 1.262950 GCGTCACATTACACTGTGCAA 59.737 47.619 7.90 1.06 44.94 4.08
345 346 0.865111 GCGTCACATTACACTGTGCA 59.135 50.000 7.90 0.00 44.94 4.57
346 347 1.148310 AGCGTCACATTACACTGTGC 58.852 50.000 7.90 0.00 44.94 4.57
347 348 3.661678 CGAAAGCGTCACATTACACTGTG 60.662 47.826 6.19 6.19 46.34 3.66
348 349 2.475111 CGAAAGCGTCACATTACACTGT 59.525 45.455 0.00 0.00 0.00 3.55
349 350 3.090312 CGAAAGCGTCACATTACACTG 57.910 47.619 0.00 0.00 0.00 3.66
363 364 1.517694 TGACGCCCGATACGAAAGC 60.518 57.895 0.00 0.00 0.00 3.51
364 365 0.457166 TGTGACGCCCGATACGAAAG 60.457 55.000 0.00 0.00 0.00 2.62
365 366 0.733566 GTGTGACGCCCGATACGAAA 60.734 55.000 0.00 0.00 0.00 3.46
366 367 1.153978 GTGTGACGCCCGATACGAA 60.154 57.895 0.00 0.00 0.00 3.85
367 368 1.864725 TTGTGTGACGCCCGATACGA 61.865 55.000 0.00 0.00 0.00 3.43
368 369 1.009903 TTTGTGTGACGCCCGATACG 61.010 55.000 0.00 0.00 0.00 3.06
369 370 1.149987 TTTTGTGTGACGCCCGATAC 58.850 50.000 0.00 0.00 0.00 2.24
370 371 1.801771 CTTTTTGTGTGACGCCCGATA 59.198 47.619 0.00 0.00 0.00 2.92
371 372 0.591170 CTTTTTGTGTGACGCCCGAT 59.409 50.000 0.00 0.00 0.00 4.18
372 373 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
373 374 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
374 375 1.310904 TACCTTTTTGTGTGACGCCC 58.689 50.000 0.00 0.00 0.00 6.13
375 376 3.110358 GTTTACCTTTTTGTGTGACGCC 58.890 45.455 0.00 0.00 0.00 5.68
376 377 3.110358 GGTTTACCTTTTTGTGTGACGC 58.890 45.455 0.00 0.00 0.00 5.19
377 378 3.356145 CGGTTTACCTTTTTGTGTGACG 58.644 45.455 0.00 0.00 0.00 4.35
378 379 3.110358 GCGGTTTACCTTTTTGTGTGAC 58.890 45.455 0.00 0.00 0.00 3.67
379 380 2.223294 CGCGGTTTACCTTTTTGTGTGA 60.223 45.455 0.00 0.00 0.00 3.58
380 381 2.113289 CGCGGTTTACCTTTTTGTGTG 58.887 47.619 0.00 0.00 0.00 3.82
381 382 1.744522 ACGCGGTTTACCTTTTTGTGT 59.255 42.857 12.47 0.00 0.00 3.72
382 383 2.113289 CACGCGGTTTACCTTTTTGTG 58.887 47.619 12.47 0.00 0.00 3.33
383 384 2.015587 TCACGCGGTTTACCTTTTTGT 58.984 42.857 12.47 0.00 0.00 2.83
384 385 2.759538 TCACGCGGTTTACCTTTTTG 57.240 45.000 12.47 0.00 0.00 2.44
385 386 3.779271 TTTCACGCGGTTTACCTTTTT 57.221 38.095 12.47 0.00 0.00 1.94
386 387 3.994204 ATTTCACGCGGTTTACCTTTT 57.006 38.095 12.47 0.00 0.00 2.27
387 388 4.067192 ACTATTTCACGCGGTTTACCTTT 58.933 39.130 12.47 0.00 0.00 3.11
388 389 3.667360 ACTATTTCACGCGGTTTACCTT 58.333 40.909 12.47 0.00 0.00 3.50
389 390 3.323751 ACTATTTCACGCGGTTTACCT 57.676 42.857 12.47 0.00 0.00 3.08
390 391 4.083908 TGAAACTATTTCACGCGGTTTACC 60.084 41.667 12.47 0.00 44.21 2.85
391 392 5.021120 TGAAACTATTTCACGCGGTTTAC 57.979 39.130 12.47 4.61 44.21 2.01
401 402 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
402 403 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
403 404 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
404 405 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
405 406 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
406 407 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
407 408 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
408 409 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
409 410 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
410 411 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
418 419 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
419 420 7.206981 ACGAAATCAAATCACAGAATGAACT 57.793 32.000 0.00 0.00 41.93 3.01
420 421 6.524586 GGACGAAATCAAATCACAGAATGAAC 59.475 38.462 0.00 0.00 41.93 3.18
421 422 6.206438 TGGACGAAATCAAATCACAGAATGAA 59.794 34.615 0.00 0.00 41.93 2.57
422 423 5.704978 TGGACGAAATCAAATCACAGAATGA 59.295 36.000 0.00 0.00 43.13 2.57
423 424 5.796935 GTGGACGAAATCAAATCACAGAATG 59.203 40.000 0.00 0.00 46.00 2.67
424 425 5.473162 TGTGGACGAAATCAAATCACAGAAT 59.527 36.000 0.00 0.00 31.29 2.40
425 426 4.819088 TGTGGACGAAATCAAATCACAGAA 59.181 37.500 0.00 0.00 31.29 3.02
426 427 4.384940 TGTGGACGAAATCAAATCACAGA 58.615 39.130 0.00 0.00 31.29 3.41
427 428 4.378770 CCTGTGGACGAAATCAAATCACAG 60.379 45.833 12.04 12.04 45.71 3.66
428 429 3.501828 CCTGTGGACGAAATCAAATCACA 59.498 43.478 0.00 0.00 33.45 3.58
429 430 3.502211 ACCTGTGGACGAAATCAAATCAC 59.498 43.478 0.00 0.00 0.00 3.06
430 431 3.750371 ACCTGTGGACGAAATCAAATCA 58.250 40.909 0.00 0.00 0.00 2.57
431 432 3.751175 TGACCTGTGGACGAAATCAAATC 59.249 43.478 0.00 0.00 0.00 2.17
432 433 3.750371 TGACCTGTGGACGAAATCAAAT 58.250 40.909 0.00 0.00 0.00 2.32
433 434 3.201353 TGACCTGTGGACGAAATCAAA 57.799 42.857 0.00 0.00 0.00 2.69
434 435 2.920724 TGACCTGTGGACGAAATCAA 57.079 45.000 0.00 0.00 0.00 2.57
435 436 2.920724 TTGACCTGTGGACGAAATCA 57.079 45.000 0.00 0.00 0.00 2.57
436 437 4.766404 AAATTGACCTGTGGACGAAATC 57.234 40.909 0.00 0.00 0.00 2.17
437 438 4.340950 ACAAAATTGACCTGTGGACGAAAT 59.659 37.500 0.00 0.00 0.00 2.17
438 439 3.697045 ACAAAATTGACCTGTGGACGAAA 59.303 39.130 0.00 0.00 0.00 3.46
439 440 3.283751 ACAAAATTGACCTGTGGACGAA 58.716 40.909 0.00 0.00 0.00 3.85
440 441 2.875933 GACAAAATTGACCTGTGGACGA 59.124 45.455 0.00 0.00 0.00 4.20
441 442 2.616376 TGACAAAATTGACCTGTGGACG 59.384 45.455 0.00 0.00 0.00 4.79
442 443 4.647424 TTGACAAAATTGACCTGTGGAC 57.353 40.909 0.00 0.00 0.00 4.02
443 444 5.867903 ATTTGACAAAATTGACCTGTGGA 57.132 34.783 4.41 0.00 31.76 4.02
444 445 6.717413 CAAATTTGACAAAATTGACCTGTGG 58.283 36.000 19.62 0.00 43.63 4.17
445 446 6.193761 GCAAATTTGACAAAATTGACCTGTG 58.806 36.000 25.81 6.98 43.63 3.66
446 447 5.296531 GGCAAATTTGACAAAATTGACCTGT 59.703 36.000 25.81 0.00 43.63 4.00
447 448 5.277925 GGGCAAATTTGACAAAATTGACCTG 60.278 40.000 33.00 11.70 43.63 4.00
448 449 4.821260 GGGCAAATTTGACAAAATTGACCT 59.179 37.500 33.00 4.53 43.63 3.85
449 450 4.319405 CGGGCAAATTTGACAAAATTGACC 60.319 41.667 31.57 31.57 43.63 4.02
450 451 4.272261 ACGGGCAAATTTGACAAAATTGAC 59.728 37.500 25.81 23.75 43.63 3.18
451 452 4.446371 ACGGGCAAATTTGACAAAATTGA 58.554 34.783 25.81 0.00 43.63 2.57
452 453 4.809815 ACGGGCAAATTTGACAAAATTG 57.190 36.364 25.05 19.89 43.63 2.32
453 454 5.235401 GTGTACGGGCAAATTTGACAAAATT 59.765 36.000 25.05 6.81 45.81 1.82
454 455 4.747605 GTGTACGGGCAAATTTGACAAAAT 59.252 37.500 25.05 9.66 38.18 1.82
455 456 4.113354 GTGTACGGGCAAATTTGACAAAA 58.887 39.130 25.05 6.84 38.18 2.44
456 457 3.491104 GGTGTACGGGCAAATTTGACAAA 60.491 43.478 25.05 7.20 38.18 2.83
457 458 2.034812 GGTGTACGGGCAAATTTGACAA 59.965 45.455 25.05 7.56 38.18 3.18
458 459 1.609555 GGTGTACGGGCAAATTTGACA 59.390 47.619 25.05 14.75 38.18 3.58
459 460 1.609555 TGGTGTACGGGCAAATTTGAC 59.390 47.619 22.31 19.34 34.70 3.18
460 461 1.609555 GTGGTGTACGGGCAAATTTGA 59.390 47.619 22.31 0.00 0.00 2.69
461 462 1.336424 GGTGGTGTACGGGCAAATTTG 60.336 52.381 14.03 14.03 0.00 2.32
462 463 0.963225 GGTGGTGTACGGGCAAATTT 59.037 50.000 0.00 0.00 0.00 1.82
463 464 0.896479 GGGTGGTGTACGGGCAAATT 60.896 55.000 0.00 0.00 0.00 1.82
464 465 1.303806 GGGTGGTGTACGGGCAAAT 60.304 57.895 0.00 0.00 0.00 2.32
465 466 2.113562 GGGTGGTGTACGGGCAAA 59.886 61.111 0.00 0.00 0.00 3.68
466 467 3.956314 GGGGTGGTGTACGGGCAA 61.956 66.667 0.00 0.00 0.00 4.52
467 468 4.966274 AGGGGTGGTGTACGGGCA 62.966 66.667 0.00 0.00 0.00 5.36
918 950 7.390718 ACAACAAAGAGCTAAATATTTCTCCGT 59.609 33.333 3.39 2.12 0.00 4.69
970 1009 2.026905 GCCCAACCAACCAACTCTTGA 61.027 52.381 0.00 0.00 0.00 3.02
1443 1496 6.237755 CGATAAATACTCCCGAGTCAAAACAC 60.238 42.308 0.00 0.00 42.54 3.32
1848 1910 5.880054 TGTAAATCTTTGGCAGAGCTTAC 57.120 39.130 16.31 16.31 35.81 2.34
1859 1924 6.795399 ACAAGCCGGAATATGTAAATCTTTG 58.205 36.000 5.05 0.00 0.00 2.77
1862 1927 6.357367 AGAACAAGCCGGAATATGTAAATCT 58.643 36.000 5.05 1.14 0.00 2.40
1863 1928 6.619801 AGAACAAGCCGGAATATGTAAATC 57.380 37.500 5.05 0.00 0.00 2.17
1865 1930 6.316890 GGTTAGAACAAGCCGGAATATGTAAA 59.683 38.462 5.05 0.00 0.00 2.01
1866 1931 5.818857 GGTTAGAACAAGCCGGAATATGTAA 59.181 40.000 5.05 0.00 0.00 2.41
1867 1932 5.362263 GGTTAGAACAAGCCGGAATATGTA 58.638 41.667 5.05 0.00 0.00 2.29
1868 1933 4.196971 GGTTAGAACAAGCCGGAATATGT 58.803 43.478 5.05 0.00 0.00 2.29
1869 1934 3.247648 CGGTTAGAACAAGCCGGAATATG 59.752 47.826 5.05 0.00 40.45 1.78
1870 1935 3.463944 CGGTTAGAACAAGCCGGAATAT 58.536 45.455 5.05 0.00 40.45 1.28
1871 1936 2.896168 CGGTTAGAACAAGCCGGAATA 58.104 47.619 5.05 0.00 40.45 1.75
1879 1944 3.667261 CAGACACGTACGGTTAGAACAAG 59.333 47.826 21.06 0.00 0.00 3.16
1894 1959 3.250762 TGAAAAGGAATCAAGCAGACACG 59.749 43.478 0.00 0.00 0.00 4.49
1895 1960 4.791974 CTGAAAAGGAATCAAGCAGACAC 58.208 43.478 0.00 0.00 0.00 3.67
1896 1961 3.254166 GCTGAAAAGGAATCAAGCAGACA 59.746 43.478 0.00 0.00 0.00 3.41
1897 1962 3.366781 GGCTGAAAAGGAATCAAGCAGAC 60.367 47.826 0.00 0.00 0.00 3.51
1898 1963 2.821969 GGCTGAAAAGGAATCAAGCAGA 59.178 45.455 0.00 0.00 0.00 4.26
1899 1964 2.415090 CGGCTGAAAAGGAATCAAGCAG 60.415 50.000 0.00 0.00 0.00 4.24
1900 1965 1.541147 CGGCTGAAAAGGAATCAAGCA 59.459 47.619 0.00 0.00 0.00 3.91
1901 1966 1.135286 CCGGCTGAAAAGGAATCAAGC 60.135 52.381 0.00 0.00 0.00 4.01
1902 1967 2.436417 TCCGGCTGAAAAGGAATCAAG 58.564 47.619 0.00 0.00 0.00 3.02
2013 2081 2.671070 CTGTCTCCAATGGCCCGT 59.329 61.111 0.00 0.00 0.00 5.28
2238 2306 2.345244 CCGCTTCCACTGCTCTGT 59.655 61.111 0.00 0.00 0.00 3.41
2313 2381 2.353607 CTATCGGAGCGTGCGTCC 60.354 66.667 0.00 0.00 31.47 4.79
2328 2396 2.172372 GCTCTCCTCGTCGTCGCTA 61.172 63.158 0.00 0.00 36.96 4.26
2335 2403 4.244802 CTCGCCGCTCTCCTCGTC 62.245 72.222 0.00 0.00 0.00 4.20
2520 2594 1.005037 ATGTTCGCCGCTGAGTCAA 60.005 52.632 0.00 0.00 0.00 3.18
2591 2665 3.966543 ACCTTTGCCACCCCCGAG 61.967 66.667 0.00 0.00 0.00 4.63
2610 2684 2.217038 TGGGTCTGTCTGGCCTGAC 61.217 63.158 30.22 30.22 41.10 3.51
2612 2686 2.348998 GTGGGTCTGTCTGGCCTG 59.651 66.667 3.32 2.92 41.10 4.85
2759 2850 5.163632 CGATCTAGTCAGAGGATGATGATGG 60.164 48.000 0.00 0.00 40.92 3.51
2767 2859 2.552599 TCGCGATCTAGTCAGAGGAT 57.447 50.000 3.71 0.00 33.22 3.24
2869 2969 1.805945 GTCGCGCAACCGATTCTCT 60.806 57.895 8.75 0.00 39.67 3.10
2885 2985 5.231568 CCGAAACATTATTGTAGTCGAGGTC 59.768 44.000 18.21 0.00 42.08 3.85
2975 3075 1.377366 TTTGCGTGCGAAGGTTCCAA 61.377 50.000 0.00 0.00 0.00 3.53
3133 3233 2.432146 GTGTCCACTATGATCAGGCTCA 59.568 50.000 0.09 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.