Multiple sequence alignment - TraesCS4D01G209200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G209200 chr4D 100.000 4467 0 0 1 4467 360603020 360598554 0.000000e+00 8250.0
1 TraesCS4D01G209200 chr4D 96.000 175 4 2 234 407 281177251 281177079 9.460000e-72 281.0
2 TraesCS4D01G209200 chr4D 95.322 171 6 2 227 396 80148292 80148123 2.050000e-68 270.0
3 TraesCS4D01G209200 chr4D 95.833 168 6 1 234 400 407792158 407792325 2.050000e-68 270.0
4 TraesCS4D01G209200 chr4D 95.455 44 2 0 192 235 186608600 186608557 2.230000e-08 71.3
5 TraesCS4D01G209200 chr4D 97.561 41 1 0 192 232 388514672 388514712 2.230000e-08 71.3
6 TraesCS4D01G209200 chr4B 93.847 1999 88 17 2005 3980 445647026 445645040 0.000000e+00 2977.0
7 TraesCS4D01G209200 chr4B 87.984 982 53 32 549 1506 445650798 445649858 0.000000e+00 1099.0
8 TraesCS4D01G209200 chr4B 92.481 532 17 9 1505 2019 445649581 445649056 0.000000e+00 739.0
9 TraesCS4D01G209200 chr4B 86.831 243 23 7 1 235 445651328 445651087 3.430000e-66 263.0
10 TraesCS4D01G209200 chr4B 98.333 60 1 0 4089 4148 445644625 445644566 6.110000e-19 106.0
11 TraesCS4D01G209200 chr4A 91.384 2008 109 22 485 2436 104264384 104266383 0.000000e+00 2691.0
12 TraesCS4D01G209200 chr4A 95.313 1579 53 10 2420 3977 104266529 104268107 0.000000e+00 2486.0
13 TraesCS4D01G209200 chr4A 95.238 231 11 0 2 232 104263753 104263983 2.540000e-97 366.0
14 TraesCS4D01G209200 chr4A 94.737 171 8 1 234 403 572704677 572704507 9.530000e-67 265.0
15 TraesCS4D01G209200 chr4A 86.266 233 11 3 4087 4299 104268101 104268332 2.690000e-57 233.0
16 TraesCS4D01G209200 chr4A 88.889 54 4 2 107 158 77219090 77219143 1.040000e-06 65.8
17 TraesCS4D01G209200 chr1D 98.593 1066 11 1 1933 2994 467358837 467357772 0.000000e+00 1882.0
18 TraesCS4D01G209200 chr1D 98.410 1069 10 3 1933 2994 476217611 476218679 0.000000e+00 1873.0
19 TraesCS4D01G209200 chr1D 97.977 939 18 1 927 1865 467359772 467358835 0.000000e+00 1628.0
20 TraesCS4D01G209200 chr1D 98.913 368 4 0 1498 1865 476217246 476217613 0.000000e+00 658.0
21 TraesCS4D01G209200 chr1D 96.364 165 5 1 234 397 339368657 339368493 2.050000e-68 270.0
22 TraesCS4D01G209200 chr1D 91.716 169 3 2 927 1095 476217082 476217239 1.620000e-54 224.0
23 TraesCS4D01G209200 chr1D 95.455 44 2 0 192 235 258784269 258784226 2.230000e-08 71.3
24 TraesCS4D01G209200 chr2D 96.970 165 4 1 234 397 330215064 330215228 4.400000e-70 276.0
25 TraesCS4D01G209200 chrUn 95.858 169 6 1 233 400 61009443 61009611 5.690000e-69 272.0
26 TraesCS4D01G209200 chr3D 95.858 169 6 1 229 396 613396228 613396396 5.690000e-69 272.0
27 TraesCS4D01G209200 chr5D 94.350 177 9 1 221 396 421112416 421112240 2.050000e-68 270.0
28 TraesCS4D01G209200 chr3B 90.323 62 3 3 2069 2129 225169895 225169836 1.330000e-10 78.7
29 TraesCS4D01G209200 chr3A 91.379 58 2 3 2070 2126 176157275 176157330 4.790000e-10 76.8
30 TraesCS4D01G209200 chr6D 95.455 44 2 0 192 235 217325290 217325247 2.230000e-08 71.3
31 TraesCS4D01G209200 chr6D 97.561 41 1 0 192 232 231726465 231726505 2.230000e-08 71.3
32 TraesCS4D01G209200 chr6D 97.561 41 1 0 192 232 357132892 357132932 2.230000e-08 71.3
33 TraesCS4D01G209200 chr6D 88.136 59 2 3 104 162 410168903 410168956 1.040000e-06 65.8
34 TraesCS4D01G209200 chr6D 94.872 39 2 0 104 142 456565570 456565532 1.340000e-05 62.1
35 TraesCS4D01G209200 chr6A 97.561 41 1 0 192 232 26445706 26445746 2.230000e-08 71.3
36 TraesCS4D01G209200 chr6A 93.333 45 2 1 102 146 405680068 405680111 1.040000e-06 65.8
37 TraesCS4D01G209200 chr6A 97.222 36 1 0 104 139 555665654 555665689 1.340000e-05 62.1
38 TraesCS4D01G209200 chr2B 83.099 71 7 3 103 173 214004122 214004187 4.830000e-05 60.2
39 TraesCS4D01G209200 chr7D 87.037 54 3 3 104 153 545224409 545224462 1.740000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G209200 chr4D 360598554 360603020 4466 True 8250.000000 8250 100.000000 1 4467 1 chr4D.!!$R4 4466
1 TraesCS4D01G209200 chr4B 445644566 445651328 6762 True 1036.800000 2977 91.895200 1 4148 5 chr4B.!!$R1 4147
2 TraesCS4D01G209200 chr4A 104263753 104268332 4579 False 1444.000000 2691 92.050250 2 4299 4 chr4A.!!$F2 4297
3 TraesCS4D01G209200 chr1D 467357772 467359772 2000 True 1755.000000 1882 98.285000 927 2994 2 chr1D.!!$R3 2067
4 TraesCS4D01G209200 chr1D 476217082 476218679 1597 False 918.333333 1873 96.346333 927 2994 3 chr1D.!!$F1 2067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 1347 0.110238 CAGCCAAAACCATCGACGTG 60.110 55.000 0.00 0.0 0.00 4.49 F
1308 1767 4.565652 CGGAGAAAATGGGGGATCGATTAT 60.566 45.833 0.00 0.0 0.00 1.28 F
1892 2648 0.952497 CGCTGGTCTGCTGTGACAAT 60.952 55.000 7.22 0.0 38.61 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 2493 1.739466 CATGCACGCAACACCTTAGAT 59.261 47.619 0.0 0.0 0.00 1.98 R
3214 6222 1.079819 AGCAGAACCATCGACACCG 60.080 57.895 0.0 0.0 37.07 4.94 R
3546 6566 0.253160 TGACTCCAATGGTAGCCCCT 60.253 55.000 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 185 7.703621 GTGCATATTGTTCATTGCAAATACTCT 59.296 33.333 1.71 0.00 45.74 3.24
186 194 3.845781 TGCAAATACTCTCTCCATCCC 57.154 47.619 0.00 0.00 0.00 3.85
235 243 5.948992 AGCTCAACCATGAAGTCTTTTAC 57.051 39.130 0.00 0.00 34.49 2.01
236 244 5.625150 AGCTCAACCATGAAGTCTTTTACT 58.375 37.500 0.00 0.00 41.49 2.24
237 245 5.703130 AGCTCAACCATGAAGTCTTTTACTC 59.297 40.000 0.00 0.00 37.50 2.59
238 246 5.106515 GCTCAACCATGAAGTCTTTTACTCC 60.107 44.000 0.00 0.00 37.50 3.85
239 247 5.313712 TCAACCATGAAGTCTTTTACTCCC 58.686 41.667 0.00 0.00 37.50 4.30
240 248 4.302559 ACCATGAAGTCTTTTACTCCCC 57.697 45.455 0.00 0.00 37.50 4.81
241 249 3.010250 ACCATGAAGTCTTTTACTCCCCC 59.990 47.826 0.00 0.00 37.50 5.40
242 250 3.270877 CATGAAGTCTTTTACTCCCCCG 58.729 50.000 0.00 0.00 37.50 5.73
243 251 2.332117 TGAAGTCTTTTACTCCCCCGT 58.668 47.619 0.00 0.00 37.50 5.28
244 252 2.707257 TGAAGTCTTTTACTCCCCCGTT 59.293 45.455 0.00 0.00 37.50 4.44
245 253 3.244318 TGAAGTCTTTTACTCCCCCGTTC 60.244 47.826 0.00 0.00 37.50 3.95
246 254 1.627329 AGTCTTTTACTCCCCCGTTCC 59.373 52.381 0.00 0.00 30.33 3.62
247 255 1.627329 GTCTTTTACTCCCCCGTTCCT 59.373 52.381 0.00 0.00 0.00 3.36
248 256 2.833943 GTCTTTTACTCCCCCGTTCCTA 59.166 50.000 0.00 0.00 0.00 2.94
249 257 3.261643 GTCTTTTACTCCCCCGTTCCTAA 59.738 47.826 0.00 0.00 0.00 2.69
250 258 3.909364 TCTTTTACTCCCCCGTTCCTAAA 59.091 43.478 0.00 0.00 0.00 1.85
251 259 4.537288 TCTTTTACTCCCCCGTTCCTAAAT 59.463 41.667 0.00 0.00 0.00 1.40
252 260 5.725822 TCTTTTACTCCCCCGTTCCTAAATA 59.274 40.000 0.00 0.00 0.00 1.40
253 261 6.387807 TCTTTTACTCCCCCGTTCCTAAATAT 59.612 38.462 0.00 0.00 0.00 1.28
254 262 6.579850 TTTACTCCCCCGTTCCTAAATATT 57.420 37.500 0.00 0.00 0.00 1.28
255 263 6.579850 TTACTCCCCCGTTCCTAAATATTT 57.420 37.500 5.89 5.89 0.00 1.40
256 264 4.788679 ACTCCCCCGTTCCTAAATATTTG 58.211 43.478 11.05 1.40 0.00 2.32
257 265 4.228895 ACTCCCCCGTTCCTAAATATTTGT 59.771 41.667 11.05 0.00 0.00 2.83
258 266 4.784177 TCCCCCGTTCCTAAATATTTGTC 58.216 43.478 11.05 0.00 0.00 3.18
259 267 4.475747 TCCCCCGTTCCTAAATATTTGTCT 59.524 41.667 11.05 0.00 0.00 3.41
260 268 5.044698 TCCCCCGTTCCTAAATATTTGTCTT 60.045 40.000 11.05 0.00 0.00 3.01
261 269 5.655090 CCCCCGTTCCTAAATATTTGTCTTT 59.345 40.000 11.05 0.00 0.00 2.52
262 270 6.183360 CCCCCGTTCCTAAATATTTGTCTTTC 60.183 42.308 11.05 0.00 0.00 2.62
263 271 6.602009 CCCCGTTCCTAAATATTTGTCTTTCT 59.398 38.462 11.05 0.00 0.00 2.52
264 272 7.771826 CCCCGTTCCTAAATATTTGTCTTTCTA 59.228 37.037 11.05 0.00 0.00 2.10
265 273 9.169592 CCCGTTCCTAAATATTTGTCTTTCTAA 57.830 33.333 11.05 0.00 0.00 2.10
278 286 8.940768 TTTGTCTTTCTAAAGGTTTCAAATGG 57.059 30.769 2.77 0.00 36.67 3.16
279 287 7.654022 TGTCTTTCTAAAGGTTTCAAATGGT 57.346 32.000 2.77 0.00 36.67 3.55
280 288 7.488322 TGTCTTTCTAAAGGTTTCAAATGGTG 58.512 34.615 2.77 0.00 36.67 4.17
281 289 7.340743 TGTCTTTCTAAAGGTTTCAAATGGTGA 59.659 33.333 2.77 0.00 36.67 4.02
282 290 7.648112 GTCTTTCTAAAGGTTTCAAATGGTGAC 59.352 37.037 2.77 0.00 34.71 3.67
283 291 7.559897 TCTTTCTAAAGGTTTCAAATGGTGACT 59.440 33.333 2.77 0.00 34.71 3.41
284 292 8.754991 TTTCTAAAGGTTTCAAATGGTGACTA 57.245 30.769 0.00 0.00 35.39 2.59
285 293 7.739498 TCTAAAGGTTTCAAATGGTGACTAC 57.261 36.000 0.00 0.00 35.39 2.73
286 294 7.284074 TCTAAAGGTTTCAAATGGTGACTACA 58.716 34.615 0.00 0.00 35.39 2.74
287 295 6.976934 AAAGGTTTCAAATGGTGACTACAT 57.023 33.333 0.00 0.00 35.39 2.29
288 296 9.226606 CTAAAGGTTTCAAATGGTGACTACATA 57.773 33.333 0.00 0.00 35.39 2.29
289 297 7.448748 AAGGTTTCAAATGGTGACTACATAC 57.551 36.000 0.00 0.00 35.39 2.39
290 298 5.642063 AGGTTTCAAATGGTGACTACATACG 59.358 40.000 0.00 0.00 35.39 3.06
291 299 5.163794 GGTTTCAAATGGTGACTACATACGG 60.164 44.000 0.00 0.00 35.39 4.02
292 300 5.408880 TTCAAATGGTGACTACATACGGA 57.591 39.130 0.00 0.00 35.39 4.69
293 301 5.408880 TCAAATGGTGACTACATACGGAA 57.591 39.130 0.00 0.00 0.00 4.30
294 302 5.172934 TCAAATGGTGACTACATACGGAAC 58.827 41.667 0.00 0.00 0.00 3.62
295 303 4.811969 AATGGTGACTACATACGGAACA 57.188 40.909 0.00 0.00 0.00 3.18
296 304 4.811969 ATGGTGACTACATACGGAACAA 57.188 40.909 0.00 0.00 0.00 2.83
297 305 4.603989 TGGTGACTACATACGGAACAAA 57.396 40.909 0.00 0.00 0.00 2.83
298 306 4.958509 TGGTGACTACATACGGAACAAAA 58.041 39.130 0.00 0.00 0.00 2.44
299 307 5.553123 TGGTGACTACATACGGAACAAAAT 58.447 37.500 0.00 0.00 0.00 1.82
300 308 5.998981 TGGTGACTACATACGGAACAAAATT 59.001 36.000 0.00 0.00 0.00 1.82
301 309 7.160049 TGGTGACTACATACGGAACAAAATTA 58.840 34.615 0.00 0.00 0.00 1.40
302 310 7.332430 TGGTGACTACATACGGAACAAAATTAG 59.668 37.037 0.00 0.00 0.00 1.73
303 311 7.332678 GGTGACTACATACGGAACAAAATTAGT 59.667 37.037 0.00 0.00 0.00 2.24
304 312 8.166706 GTGACTACATACGGAACAAAATTAGTG 58.833 37.037 0.00 0.00 0.00 2.74
305 313 8.089597 TGACTACATACGGAACAAAATTAGTGA 58.910 33.333 0.00 0.00 0.00 3.41
306 314 8.836268 ACTACATACGGAACAAAATTAGTGAA 57.164 30.769 0.00 0.00 0.00 3.18
307 315 9.444600 ACTACATACGGAACAAAATTAGTGAAT 57.555 29.630 0.00 0.00 0.00 2.57
308 316 9.916397 CTACATACGGAACAAAATTAGTGAATC 57.084 33.333 0.00 0.00 0.00 2.52
309 317 8.561738 ACATACGGAACAAAATTAGTGAATCT 57.438 30.769 0.00 0.00 0.00 2.40
310 318 9.661563 ACATACGGAACAAAATTAGTGAATCTA 57.338 29.630 0.00 0.00 0.00 1.98
311 319 9.916397 CATACGGAACAAAATTAGTGAATCTAC 57.084 33.333 0.00 0.00 0.00 2.59
312 320 7.972832 ACGGAACAAAATTAGTGAATCTACA 57.027 32.000 0.00 0.00 0.00 2.74
313 321 7.803724 ACGGAACAAAATTAGTGAATCTACAC 58.196 34.615 0.00 0.00 40.60 2.90
315 323 8.169268 CGGAACAAAATTAGTGAATCTACACTC 58.831 37.037 4.63 0.00 46.36 3.51
316 324 9.220767 GGAACAAAATTAGTGAATCTACACTCT 57.779 33.333 4.63 0.00 46.36 3.24
355 363 8.853077 ATATATCAGTATGTGGTGACCATTTG 57.147 34.615 7.94 2.63 35.28 2.32
356 364 4.632327 TCAGTATGTGGTGACCATTTGA 57.368 40.909 7.94 5.06 35.28 2.69
357 365 4.979335 TCAGTATGTGGTGACCATTTGAA 58.021 39.130 7.94 0.00 35.28 2.69
358 366 5.380900 TCAGTATGTGGTGACCATTTGAAA 58.619 37.500 7.94 0.00 35.28 2.69
359 367 6.009589 TCAGTATGTGGTGACCATTTGAAAT 58.990 36.000 7.94 0.00 35.28 2.17
360 368 6.150976 TCAGTATGTGGTGACCATTTGAAATC 59.849 38.462 7.94 0.00 35.28 2.17
361 369 6.151648 CAGTATGTGGTGACCATTTGAAATCT 59.848 38.462 7.94 0.00 35.28 2.40
362 370 5.649782 ATGTGGTGACCATTTGAAATCTC 57.350 39.130 7.94 0.00 35.28 2.75
363 371 4.728772 TGTGGTGACCATTTGAAATCTCT 58.271 39.130 7.94 0.00 35.28 3.10
364 372 5.875224 TGTGGTGACCATTTGAAATCTCTA 58.125 37.500 7.94 0.00 35.28 2.43
365 373 5.939883 TGTGGTGACCATTTGAAATCTCTAG 59.060 40.000 7.94 0.00 35.28 2.43
366 374 6.173339 GTGGTGACCATTTGAAATCTCTAGA 58.827 40.000 7.94 0.00 35.28 2.43
367 375 6.655003 GTGGTGACCATTTGAAATCTCTAGAA 59.345 38.462 7.94 0.00 35.28 2.10
368 376 7.174946 GTGGTGACCATTTGAAATCTCTAGAAA 59.825 37.037 7.94 0.00 35.28 2.52
369 377 7.391554 TGGTGACCATTTGAAATCTCTAGAAAG 59.608 37.037 0.00 0.00 0.00 2.62
370 378 7.607991 GGTGACCATTTGAAATCTCTAGAAAGA 59.392 37.037 0.00 0.00 0.00 2.52
371 379 8.447053 GTGACCATTTGAAATCTCTAGAAAGAC 58.553 37.037 0.00 0.00 0.00 3.01
372 380 8.156820 TGACCATTTGAAATCTCTAGAAAGACA 58.843 33.333 0.00 0.00 0.00 3.41
373 381 8.924511 ACCATTTGAAATCTCTAGAAAGACAA 57.075 30.769 0.00 0.00 0.00 3.18
374 382 9.354673 ACCATTTGAAATCTCTAGAAAGACAAA 57.645 29.630 0.00 4.41 0.00 2.83
387 395 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
388 396 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
389 397 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
390 398 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
391 399 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
392 400 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
393 401 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
394 402 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
395 403 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
399 407 2.074729 AGGAACGGAGGGAGTAGATG 57.925 55.000 0.00 0.00 0.00 2.90
449 457 1.075601 ATGGTATCCAATGCCCGGAT 58.924 50.000 0.73 4.30 45.41 4.18
456 566 5.124936 GGTATCCAATGCCCGGATAAAATAC 59.875 44.000 0.73 2.09 45.02 1.89
518 908 4.811969 TGGTGTTGTAGGTGTCGATAAT 57.188 40.909 0.00 0.00 0.00 1.28
519 909 5.155278 TGGTGTTGTAGGTGTCGATAATT 57.845 39.130 0.00 0.00 0.00 1.40
600 1033 1.689273 GGAGTGGCATAGAGATCCGTT 59.311 52.381 0.00 0.00 0.00 4.44
627 1063 7.003482 TGTTTAGATGGCATATAATTGGAGCA 58.997 34.615 14.70 0.00 0.00 4.26
646 1082 2.032550 GCATTTGGATCTGTGATGGTCG 59.967 50.000 0.00 0.00 0.00 4.79
651 1087 0.456221 GATCTGTGATGGTCGGTCGT 59.544 55.000 0.00 0.00 0.00 4.34
652 1088 1.674441 GATCTGTGATGGTCGGTCGTA 59.326 52.381 0.00 0.00 0.00 3.43
653 1089 0.806868 TCTGTGATGGTCGGTCGTAC 59.193 55.000 0.00 0.00 0.00 3.67
719 1155 2.047274 ACGTGGGTGCCAAGATCG 60.047 61.111 0.00 0.00 36.54 3.69
723 1159 1.021390 GTGGGTGCCAAGATCGTCTG 61.021 60.000 0.00 0.00 34.18 3.51
750 1186 1.227089 CCTCGATCTCCGGCTGTTG 60.227 63.158 0.00 0.00 39.14 3.33
754 1190 0.456221 CGATCTCCGGCTGTTGTACT 59.544 55.000 0.00 0.00 33.91 2.73
756 1192 2.271800 GATCTCCGGCTGTTGTACTTG 58.728 52.381 0.00 0.00 0.00 3.16
757 1193 1.045407 TCTCCGGCTGTTGTACTTGT 58.955 50.000 0.00 0.00 0.00 3.16
759 1195 0.466543 TCCGGCTGTTGTACTTGTGT 59.533 50.000 0.00 0.00 0.00 3.72
785 1227 4.462508 TGAATGAAAAGCACACACCAAA 57.537 36.364 0.00 0.00 0.00 3.28
803 1245 2.997315 CAGTGCCCCTCCGACTCA 60.997 66.667 0.00 0.00 0.00 3.41
805 1247 4.459089 GTGCCCCTCCGACTCAGC 62.459 72.222 0.00 0.00 0.00 4.26
806 1248 4.704103 TGCCCCTCCGACTCAGCT 62.704 66.667 0.00 0.00 0.00 4.24
904 1347 0.110238 CAGCCAAAACCATCGACGTG 60.110 55.000 0.00 0.00 0.00 4.49
1308 1767 4.565652 CGGAGAAAATGGGGGATCGATTAT 60.566 45.833 0.00 0.00 0.00 1.28
1738 2493 5.611374 GCAGATAGCACCTCCAACTTTATA 58.389 41.667 0.00 0.00 44.79 0.98
1892 2648 0.952497 CGCTGGTCTGCTGTGACAAT 60.952 55.000 7.22 0.00 38.61 2.71
2266 5092 4.326504 AACTGGTTGAAAAGCTGGAATG 57.673 40.909 0.00 0.00 46.34 2.67
2312 5145 2.280628 CGGCCTTACCTTGATCAGAAC 58.719 52.381 0.00 0.00 35.61 3.01
2767 5775 7.639945 ACAGTCCAATTAAGAAAAGAAAGTCG 58.360 34.615 0.00 0.00 0.00 4.18
3188 6196 6.457799 CGATGATGACATTGAGAAAATCTGCA 60.458 38.462 0.00 0.00 39.55 4.41
3214 6222 0.107508 TGAATGAGCTAGCAGGTGGC 60.108 55.000 18.83 0.00 45.30 5.01
3271 6279 2.351726 GACGCTTTACTCGAATGGCATT 59.648 45.455 13.54 13.54 0.00 3.56
3296 6304 4.895961 TGATTTCATGATTTTGCCAGCAA 58.104 34.783 0.00 0.00 0.00 3.91
3408 6426 5.310594 TCAAAATCAGGGGAGAAGAAGAAGA 59.689 40.000 0.00 0.00 0.00 2.87
3477 6495 3.508762 CTTTAGCGTGACCGTAACAGAT 58.491 45.455 0.00 0.00 36.15 2.90
3486 6504 5.163893 CGTGACCGTAACAGATAATTTGCTT 60.164 40.000 0.00 0.00 0.00 3.91
3540 6560 8.000709 TCCTAACCTATCATGAATGAGCAAATT 58.999 33.333 0.00 0.00 40.64 1.82
3546 6566 8.843262 CCTATCATGAATGAGCAAATTCAAGTA 58.157 33.333 15.45 9.35 46.66 2.24
3743 6775 3.072330 TGTTCCTTTCATCTGCTGGTGTA 59.928 43.478 3.58 0.00 0.00 2.90
3800 6832 8.074972 AGAATTGGACGTCGAACTATAGATTAC 58.925 37.037 15.53 0.00 0.00 1.89
3815 6847 8.244802 ACTATAGATTACGCTATTGGTGATCAC 58.755 37.037 17.91 17.91 34.04 3.06
3863 6895 9.216117 GAGTGAAAATAGCAGTTACTAGGAAAA 57.784 33.333 0.00 0.00 0.00 2.29
3959 6991 5.091261 GGTGTCTTCTATCTCACCATGTT 57.909 43.478 8.09 0.00 46.44 2.71
3960 6992 4.872691 GGTGTCTTCTATCTCACCATGTTG 59.127 45.833 8.09 0.00 46.44 3.33
3961 6993 5.337571 GGTGTCTTCTATCTCACCATGTTGA 60.338 44.000 8.09 0.00 46.44 3.18
3962 6994 6.344500 GTGTCTTCTATCTCACCATGTTGAT 58.656 40.000 0.00 0.00 0.00 2.57
3964 6996 7.010923 GTGTCTTCTATCTCACCATGTTGATTC 59.989 40.741 0.00 0.00 0.00 2.52
3965 6997 7.044181 GTCTTCTATCTCACCATGTTGATTCA 58.956 38.462 0.00 0.00 0.00 2.57
3966 6998 7.224362 GTCTTCTATCTCACCATGTTGATTCAG 59.776 40.741 0.00 0.00 0.00 3.02
3967 6999 6.796785 TCTATCTCACCATGTTGATTCAGA 57.203 37.500 0.00 0.00 0.00 3.27
3968 7000 6.814043 TCTATCTCACCATGTTGATTCAGAG 58.186 40.000 0.00 0.00 0.00 3.35
3969 7001 4.897509 TCTCACCATGTTGATTCAGAGT 57.102 40.909 0.00 0.00 0.00 3.24
3971 7003 4.999311 TCTCACCATGTTGATTCAGAGTTG 59.001 41.667 0.00 0.00 0.00 3.16
3972 7004 4.717877 TCACCATGTTGATTCAGAGTTGT 58.282 39.130 0.00 0.00 0.00 3.32
3973 7005 4.756642 TCACCATGTTGATTCAGAGTTGTC 59.243 41.667 0.00 0.00 0.00 3.18
3974 7006 4.074970 ACCATGTTGATTCAGAGTTGTCC 58.925 43.478 0.00 0.00 0.00 4.02
3975 7007 4.202503 ACCATGTTGATTCAGAGTTGTCCT 60.203 41.667 0.00 0.00 0.00 3.85
3976 7008 4.763793 CCATGTTGATTCAGAGTTGTCCTT 59.236 41.667 0.00 0.00 0.00 3.36
3977 7009 5.242393 CCATGTTGATTCAGAGTTGTCCTTT 59.758 40.000 0.00 0.00 0.00 3.11
3978 7010 5.756195 TGTTGATTCAGAGTTGTCCTTTG 57.244 39.130 0.00 0.00 0.00 2.77
3979 7011 4.580167 TGTTGATTCAGAGTTGTCCTTTGG 59.420 41.667 0.00 0.00 0.00 3.28
3980 7012 4.437682 TGATTCAGAGTTGTCCTTTGGT 57.562 40.909 0.00 0.00 0.00 3.67
3981 7013 4.792068 TGATTCAGAGTTGTCCTTTGGTT 58.208 39.130 0.00 0.00 0.00 3.67
3982 7014 5.935945 TGATTCAGAGTTGTCCTTTGGTTA 58.064 37.500 0.00 0.00 0.00 2.85
3983 7015 5.997746 TGATTCAGAGTTGTCCTTTGGTTAG 59.002 40.000 0.00 0.00 0.00 2.34
3984 7016 4.351874 TCAGAGTTGTCCTTTGGTTAGG 57.648 45.455 0.00 0.00 36.59 2.69
3985 7017 3.714798 TCAGAGTTGTCCTTTGGTTAGGT 59.285 43.478 0.00 0.00 36.63 3.08
3986 7018 3.815401 CAGAGTTGTCCTTTGGTTAGGTG 59.185 47.826 0.00 0.00 36.63 4.00
3987 7019 3.146847 GAGTTGTCCTTTGGTTAGGTGG 58.853 50.000 0.00 0.00 36.63 4.61
3988 7020 1.611977 GTTGTCCTTTGGTTAGGTGGC 59.388 52.381 0.00 0.00 36.63 5.01
3989 7021 0.111639 TGTCCTTTGGTTAGGTGGCC 59.888 55.000 0.00 0.00 36.63 5.36
3990 7022 0.404426 GTCCTTTGGTTAGGTGGCCT 59.596 55.000 3.32 0.00 36.63 5.19
3991 7023 1.631898 GTCCTTTGGTTAGGTGGCCTA 59.368 52.381 3.32 0.00 36.63 3.93
3992 7024 2.040679 GTCCTTTGGTTAGGTGGCCTAA 59.959 50.000 3.32 3.70 43.01 2.69
3993 7025 2.923629 TCCTTTGGTTAGGTGGCCTAAT 59.076 45.455 3.32 0.00 46.16 1.73
3994 7026 3.053917 TCCTTTGGTTAGGTGGCCTAATC 60.054 47.826 3.32 10.41 46.16 1.75
3995 7027 3.053619 CCTTTGGTTAGGTGGCCTAATCT 60.054 47.826 16.37 0.00 46.16 2.40
3996 7028 3.926058 TTGGTTAGGTGGCCTAATCTC 57.074 47.619 16.37 8.49 46.16 2.75
3997 7029 2.124411 TGGTTAGGTGGCCTAATCTCC 58.876 52.381 16.37 11.16 46.16 3.71
3998 7030 2.293586 TGGTTAGGTGGCCTAATCTCCT 60.294 50.000 16.37 4.96 46.16 3.69
3999 7031 2.104963 GGTTAGGTGGCCTAATCTCCTG 59.895 54.545 3.32 0.00 46.16 3.86
4000 7032 1.424638 TAGGTGGCCTAATCTCCTGC 58.575 55.000 3.32 0.00 32.55 4.85
4001 7033 0.621571 AGGTGGCCTAATCTCCTGCA 60.622 55.000 3.32 0.00 28.47 4.41
4002 7034 0.464554 GGTGGCCTAATCTCCTGCAC 60.465 60.000 3.32 0.00 0.00 4.57
4003 7035 0.464554 GTGGCCTAATCTCCTGCACC 60.465 60.000 3.32 0.00 0.00 5.01
4004 7036 1.149401 GGCCTAATCTCCTGCACCC 59.851 63.158 0.00 0.00 0.00 4.61
4005 7037 1.635817 GGCCTAATCTCCTGCACCCA 61.636 60.000 0.00 0.00 0.00 4.51
4006 7038 0.464554 GCCTAATCTCCTGCACCCAC 60.465 60.000 0.00 0.00 0.00 4.61
4007 7039 0.179073 CCTAATCTCCTGCACCCACG 60.179 60.000 0.00 0.00 0.00 4.94
4008 7040 0.811616 CTAATCTCCTGCACCCACGC 60.812 60.000 0.00 0.00 0.00 5.34
4009 7041 2.252072 TAATCTCCTGCACCCACGCC 62.252 60.000 0.00 0.00 0.00 5.68
4045 7077 3.462678 GCGGACCTCCCACTCCTC 61.463 72.222 0.00 0.00 34.14 3.71
4046 7078 2.037367 CGGACCTCCCACTCCTCA 59.963 66.667 0.00 0.00 34.14 3.86
4047 7079 2.352032 CGGACCTCCCACTCCTCAC 61.352 68.421 0.00 0.00 34.14 3.51
4048 7080 1.079438 GGACCTCCCACTCCTCACT 59.921 63.158 0.00 0.00 34.14 3.41
4049 7081 1.261238 GGACCTCCCACTCCTCACTG 61.261 65.000 0.00 0.00 34.14 3.66
4050 7082 1.893919 GACCTCCCACTCCTCACTGC 61.894 65.000 0.00 0.00 0.00 4.40
4051 7083 2.575993 CTCCCACTCCTCACTGCG 59.424 66.667 0.00 0.00 0.00 5.18
4052 7084 3.655810 CTCCCACTCCTCACTGCGC 62.656 68.421 0.00 0.00 0.00 6.09
4053 7085 4.767255 CCCACTCCTCACTGCGCC 62.767 72.222 4.18 0.00 0.00 6.53
4055 7087 4.363990 CACTCCTCACTGCGCCGT 62.364 66.667 4.18 0.00 0.00 5.68
4056 7088 4.363990 ACTCCTCACTGCGCCGTG 62.364 66.667 24.06 24.06 36.25 4.94
4057 7089 4.056125 CTCCTCACTGCGCCGTGA 62.056 66.667 29.05 29.05 41.33 4.35
4058 7090 3.362399 CTCCTCACTGCGCCGTGAT 62.362 63.158 30.66 0.00 42.51 3.06
4059 7091 2.887568 CCTCACTGCGCCGTGATC 60.888 66.667 30.66 0.00 42.51 2.92
4060 7092 2.887568 CTCACTGCGCCGTGATCC 60.888 66.667 30.66 0.00 42.51 3.36
4061 7093 3.647649 CTCACTGCGCCGTGATCCA 62.648 63.158 30.66 12.25 42.51 3.41
4062 7094 2.512286 CACTGCGCCGTGATCCAT 60.512 61.111 25.55 0.00 37.06 3.41
4063 7095 2.108514 CACTGCGCCGTGATCCATT 61.109 57.895 25.55 0.00 37.06 3.16
4064 7096 1.815421 ACTGCGCCGTGATCCATTC 60.815 57.895 4.18 0.00 0.00 2.67
4065 7097 2.513666 TGCGCCGTGATCCATTCC 60.514 61.111 4.18 0.00 0.00 3.01
4066 7098 3.640000 GCGCCGTGATCCATTCCG 61.640 66.667 0.00 0.00 0.00 4.30
4067 7099 2.967076 CGCCGTGATCCATTCCGG 60.967 66.667 0.00 0.00 39.66 5.14
4075 7107 2.264480 TCCATTCCGGACACAGCG 59.736 61.111 1.83 0.00 39.64 5.18
4076 7108 2.819595 CCATTCCGGACACAGCGG 60.820 66.667 1.83 0.00 36.56 5.52
4077 7109 3.499737 CATTCCGGACACAGCGGC 61.500 66.667 1.83 0.00 0.00 6.53
4078 7110 4.778143 ATTCCGGACACAGCGGCC 62.778 66.667 1.83 0.00 0.00 6.13
4084 7116 4.927782 GACACAGCGGCCACCACA 62.928 66.667 2.24 0.00 0.00 4.17
4085 7117 4.497984 ACACAGCGGCCACCACAA 62.498 61.111 2.24 0.00 0.00 3.33
4220 7674 4.431131 CCCTCAGGCCCACGCATT 62.431 66.667 0.00 0.00 36.38 3.56
4234 7708 3.101209 CATTGCCCCATCGACACG 58.899 61.111 0.00 0.00 0.00 4.49
4238 7712 4.856801 GCCCCATCGACACGCCAT 62.857 66.667 0.00 0.00 0.00 4.40
4308 7782 2.654749 GCTGTATTTTCAGGCCCAAC 57.345 50.000 0.00 0.00 36.12 3.77
4309 7783 2.171003 GCTGTATTTTCAGGCCCAACT 58.829 47.619 0.00 0.00 36.12 3.16
4310 7784 2.562738 GCTGTATTTTCAGGCCCAACTT 59.437 45.455 0.00 0.00 36.12 2.66
4311 7785 3.367395 GCTGTATTTTCAGGCCCAACTTC 60.367 47.826 0.00 0.00 36.12 3.01
4312 7786 3.161866 TGTATTTTCAGGCCCAACTTCC 58.838 45.455 0.00 0.00 0.00 3.46
4313 7787 2.397044 ATTTTCAGGCCCAACTTCCA 57.603 45.000 0.00 0.00 0.00 3.53
4314 7788 2.397044 TTTTCAGGCCCAACTTCCAT 57.603 45.000 0.00 0.00 0.00 3.41
4315 7789 3.534357 TTTTCAGGCCCAACTTCCATA 57.466 42.857 0.00 0.00 0.00 2.74
4316 7790 2.507407 TTCAGGCCCAACTTCCATAC 57.493 50.000 0.00 0.00 0.00 2.39
4317 7791 0.623723 TCAGGCCCAACTTCCATACC 59.376 55.000 0.00 0.00 0.00 2.73
4318 7792 0.395724 CAGGCCCAACTTCCATACCC 60.396 60.000 0.00 0.00 0.00 3.69
4319 7793 1.453197 GGCCCAACTTCCATACCCG 60.453 63.158 0.00 0.00 0.00 5.28
4320 7794 2.119029 GCCCAACTTCCATACCCGC 61.119 63.158 0.00 0.00 0.00 6.13
4321 7795 1.301623 CCCAACTTCCATACCCGCA 59.698 57.895 0.00 0.00 0.00 5.69
4322 7796 1.029947 CCCAACTTCCATACCCGCAC 61.030 60.000 0.00 0.00 0.00 5.34
4323 7797 1.366111 CCAACTTCCATACCCGCACG 61.366 60.000 0.00 0.00 0.00 5.34
4324 7798 0.390603 CAACTTCCATACCCGCACGA 60.391 55.000 0.00 0.00 0.00 4.35
4325 7799 0.390735 AACTTCCATACCCGCACGAC 60.391 55.000 0.00 0.00 0.00 4.34
4326 7800 1.520787 CTTCCATACCCGCACGACC 60.521 63.158 0.00 0.00 0.00 4.79
4327 7801 2.918230 CTTCCATACCCGCACGACCC 62.918 65.000 0.00 0.00 0.00 4.46
4328 7802 4.884257 CCATACCCGCACGACCCG 62.884 72.222 0.00 0.00 0.00 5.28
4329 7803 4.137872 CATACCCGCACGACCCGT 62.138 66.667 0.00 0.00 42.36 5.28
4330 7804 3.384532 ATACCCGCACGACCCGTT 61.385 61.111 0.00 0.00 38.32 4.44
4331 7805 2.946346 ATACCCGCACGACCCGTTT 61.946 57.895 0.00 0.00 38.32 3.60
4332 7806 1.603236 ATACCCGCACGACCCGTTTA 61.603 55.000 0.00 0.00 38.32 2.01
4333 7807 1.810606 TACCCGCACGACCCGTTTAA 61.811 55.000 0.00 0.00 38.32 1.52
4334 7808 2.670210 CCCGCACGACCCGTTTAAC 61.670 63.158 0.00 0.00 38.32 2.01
4335 7809 2.670210 CCGCACGACCCGTTTAACC 61.670 63.158 0.00 0.00 38.32 2.85
4336 7810 2.670210 CGCACGACCCGTTTAACCC 61.670 63.158 0.00 0.00 38.32 4.11
4337 7811 1.597578 GCACGACCCGTTTAACCCA 60.598 57.895 0.00 0.00 38.32 4.51
4338 7812 0.956902 GCACGACCCGTTTAACCCAT 60.957 55.000 0.00 0.00 38.32 4.00
4339 7813 0.800012 CACGACCCGTTTAACCCATG 59.200 55.000 0.00 0.00 38.32 3.66
4340 7814 0.397564 ACGACCCGTTTAACCCATGT 59.602 50.000 0.00 0.00 36.35 3.21
4341 7815 1.081094 CGACCCGTTTAACCCATGTC 58.919 55.000 0.00 0.00 0.00 3.06
4342 7816 1.081094 GACCCGTTTAACCCATGTCG 58.919 55.000 0.00 0.00 0.00 4.35
4343 7817 0.397564 ACCCGTTTAACCCATGTCGT 59.602 50.000 0.00 0.00 0.00 4.34
4344 7818 0.800012 CCCGTTTAACCCATGTCGTG 59.200 55.000 0.00 0.00 0.00 4.35
4345 7819 1.515081 CCGTTTAACCCATGTCGTGT 58.485 50.000 0.00 0.00 0.00 4.49
4346 7820 1.461897 CCGTTTAACCCATGTCGTGTC 59.538 52.381 0.00 0.00 0.00 3.67
4347 7821 1.125384 CGTTTAACCCATGTCGTGTCG 59.875 52.381 0.00 0.00 0.00 4.35
4348 7822 2.137523 GTTTAACCCATGTCGTGTCGT 58.862 47.619 0.00 0.00 0.00 4.34
4349 7823 3.316283 GTTTAACCCATGTCGTGTCGTA 58.684 45.455 0.00 0.00 0.00 3.43
4350 7824 3.872511 TTAACCCATGTCGTGTCGTAT 57.127 42.857 0.00 0.00 0.00 3.06
4351 7825 2.754946 AACCCATGTCGTGTCGTATT 57.245 45.000 0.00 0.00 0.00 1.89
4352 7826 2.754946 ACCCATGTCGTGTCGTATTT 57.245 45.000 0.00 0.00 0.00 1.40
4353 7827 2.343101 ACCCATGTCGTGTCGTATTTG 58.657 47.619 0.00 0.00 0.00 2.32
4354 7828 1.663643 CCCATGTCGTGTCGTATTTGG 59.336 52.381 0.00 0.00 0.00 3.28
4355 7829 1.062002 CCATGTCGTGTCGTATTTGGC 59.938 52.381 0.00 0.00 0.00 4.52
4356 7830 1.729517 CATGTCGTGTCGTATTTGGCA 59.270 47.619 0.00 0.00 0.00 4.92
4357 7831 2.087501 TGTCGTGTCGTATTTGGCAT 57.912 45.000 0.00 0.00 0.00 4.40
4358 7832 1.729517 TGTCGTGTCGTATTTGGCATG 59.270 47.619 0.00 0.00 0.00 4.06
4359 7833 0.724549 TCGTGTCGTATTTGGCATGC 59.275 50.000 9.90 9.90 0.00 4.06
4360 7834 0.726827 CGTGTCGTATTTGGCATGCT 59.273 50.000 18.92 0.00 0.00 3.79
4361 7835 1.930503 CGTGTCGTATTTGGCATGCTA 59.069 47.619 18.92 9.16 0.00 3.49
4362 7836 2.033747 CGTGTCGTATTTGGCATGCTAG 60.034 50.000 18.92 0.00 0.00 3.42
4363 7837 1.939934 TGTCGTATTTGGCATGCTAGC 59.060 47.619 18.92 8.10 0.00 3.42
4364 7838 1.070577 GTCGTATTTGGCATGCTAGCG 60.071 52.381 18.92 14.09 34.64 4.26
4365 7839 0.235665 CGTATTTGGCATGCTAGCGG 59.764 55.000 18.92 6.01 34.64 5.52
4366 7840 0.593128 GTATTTGGCATGCTAGCGGG 59.407 55.000 18.92 5.61 34.64 6.13
4367 7841 1.172180 TATTTGGCATGCTAGCGGGC 61.172 55.000 18.92 21.21 34.64 6.13
4384 7858 4.181010 CCGGCCCTGCTAGCACAT 62.181 66.667 14.93 0.00 0.00 3.21
4385 7859 2.590007 CGGCCCTGCTAGCACATC 60.590 66.667 14.93 5.06 0.00 3.06
4386 7860 2.203266 GGCCCTGCTAGCACATCC 60.203 66.667 14.93 10.79 0.00 3.51
4387 7861 2.203266 GCCCTGCTAGCACATCCC 60.203 66.667 14.93 0.00 0.00 3.85
4388 7862 3.047807 GCCCTGCTAGCACATCCCA 62.048 63.158 14.93 0.00 0.00 4.37
4389 7863 1.147824 CCCTGCTAGCACATCCCAG 59.852 63.158 14.93 1.68 0.00 4.45
4390 7864 1.340399 CCCTGCTAGCACATCCCAGA 61.340 60.000 14.93 0.00 0.00 3.86
4391 7865 0.763652 CCTGCTAGCACATCCCAGAT 59.236 55.000 14.93 0.00 0.00 2.90
4392 7866 1.542767 CCTGCTAGCACATCCCAGATG 60.543 57.143 14.93 0.00 0.00 2.90
4393 7867 0.179037 TGCTAGCACATCCCAGATGC 60.179 55.000 14.93 0.00 39.74 3.91
4394 7868 0.888285 GCTAGCACATCCCAGATGCC 60.888 60.000 10.63 0.00 40.33 4.40
4395 7869 0.250640 CTAGCACATCCCAGATGCCC 60.251 60.000 4.51 0.00 40.33 5.36
4396 7870 0.987613 TAGCACATCCCAGATGCCCA 60.988 55.000 4.51 0.00 40.33 5.36
4397 7871 1.826921 GCACATCCCAGATGCCCAG 60.827 63.158 4.51 0.00 33.06 4.45
4398 7872 1.152819 CACATCCCAGATGCCCAGG 60.153 63.158 4.51 0.00 0.00 4.45
4399 7873 1.620589 ACATCCCAGATGCCCAGGT 60.621 57.895 4.51 0.00 0.00 4.00
4400 7874 1.217057 ACATCCCAGATGCCCAGGTT 61.217 55.000 4.51 0.00 0.00 3.50
4401 7875 0.032813 CATCCCAGATGCCCAGGTTT 60.033 55.000 0.00 0.00 0.00 3.27
4402 7876 0.032813 ATCCCAGATGCCCAGGTTTG 60.033 55.000 0.00 0.00 0.00 2.93
4403 7877 2.353610 CCCAGATGCCCAGGTTTGC 61.354 63.158 0.00 0.00 0.00 3.68
4404 7878 1.304713 CCAGATGCCCAGGTTTGCT 60.305 57.895 0.00 0.00 0.00 3.91
4405 7879 0.901580 CCAGATGCCCAGGTTTGCTT 60.902 55.000 0.00 0.00 0.00 3.91
4406 7880 0.245539 CAGATGCCCAGGTTTGCTTG 59.754 55.000 0.00 0.00 0.00 4.01
4407 7881 0.178953 AGATGCCCAGGTTTGCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
4408 7882 0.681175 GATGCCCAGGTTTGCTTGTT 59.319 50.000 0.00 0.00 0.00 2.83
4409 7883 0.681175 ATGCCCAGGTTTGCTTGTTC 59.319 50.000 0.00 0.00 0.00 3.18
4410 7884 1.367471 GCCCAGGTTTGCTTGTTCC 59.633 57.895 0.00 0.00 0.00 3.62
4411 7885 2.049435 CCCAGGTTTGCTTGTTCCC 58.951 57.895 0.00 0.00 0.00 3.97
4412 7886 1.659794 CCAGGTTTGCTTGTTCCCG 59.340 57.895 0.00 0.00 0.00 5.14
4413 7887 1.007387 CAGGTTTGCTTGTTCCCGC 60.007 57.895 0.00 0.00 0.00 6.13
4414 7888 2.200337 AGGTTTGCTTGTTCCCGCC 61.200 57.895 0.00 0.00 0.00 6.13
4415 7889 2.494530 GGTTTGCTTGTTCCCGCCA 61.495 57.895 0.00 0.00 0.00 5.69
4416 7890 1.299850 GTTTGCTTGTTCCCGCCAC 60.300 57.895 0.00 0.00 0.00 5.01
4417 7891 1.754621 TTTGCTTGTTCCCGCCACA 60.755 52.632 0.00 0.00 0.00 4.17
4418 7892 1.323271 TTTGCTTGTTCCCGCCACAA 61.323 50.000 0.00 0.00 33.09 3.33
4421 7895 4.473643 TTGTTCCCGCCACAAGAG 57.526 55.556 0.00 0.00 30.49 2.85
4422 7896 1.529796 TTGTTCCCGCCACAAGAGT 59.470 52.632 0.00 0.00 30.49 3.24
4423 7897 0.759959 TTGTTCCCGCCACAAGAGTA 59.240 50.000 0.00 0.00 30.49 2.59
4424 7898 0.034337 TGTTCCCGCCACAAGAGTAC 59.966 55.000 0.00 0.00 0.00 2.73
4425 7899 0.034337 GTTCCCGCCACAAGAGTACA 59.966 55.000 0.00 0.00 0.00 2.90
4426 7900 0.034337 TTCCCGCCACAAGAGTACAC 59.966 55.000 0.00 0.00 0.00 2.90
4427 7901 1.375523 CCCGCCACAAGAGTACACC 60.376 63.158 0.00 0.00 0.00 4.16
4428 7902 1.671742 CCGCCACAAGAGTACACCT 59.328 57.895 0.00 0.00 0.00 4.00
4429 7903 0.389948 CCGCCACAAGAGTACACCTC 60.390 60.000 0.00 0.00 40.80 3.85
4442 7916 3.382111 ACCTCTGGGTGAAGCTCG 58.618 61.111 0.00 0.00 45.43 5.03
4443 7917 2.125350 CCTCTGGGTGAAGCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
4444 7918 2.654079 CCTCTGGGTGAAGCTCGCT 61.654 63.158 0.00 0.00 0.00 4.93
4445 7919 1.294780 CTCTGGGTGAAGCTCGCTT 59.705 57.895 3.43 3.43 39.23 4.68
4446 7920 1.004560 TCTGGGTGAAGCTCGCTTG 60.005 57.895 9.15 0.00 36.26 4.01
4447 7921 2.032528 TGGGTGAAGCTCGCTTGG 59.967 61.111 9.15 0.00 36.26 3.61
4448 7922 2.032681 GGGTGAAGCTCGCTTGGT 59.967 61.111 9.15 0.00 36.26 3.67
4449 7923 2.035442 GGGTGAAGCTCGCTTGGTC 61.035 63.158 9.15 0.00 36.26 4.02
4450 7924 1.301716 GGTGAAGCTCGCTTGGTCA 60.302 57.895 9.15 0.00 36.26 4.02
4451 7925 0.884704 GGTGAAGCTCGCTTGGTCAA 60.885 55.000 9.15 0.00 36.26 3.18
4452 7926 0.235926 GTGAAGCTCGCTTGGTCAAC 59.764 55.000 9.15 0.00 36.26 3.18
4453 7927 0.179059 TGAAGCTCGCTTGGTCAACA 60.179 50.000 9.15 0.00 36.26 3.33
4454 7928 0.514691 GAAGCTCGCTTGGTCAACAG 59.485 55.000 9.15 0.00 36.26 3.16
4455 7929 0.179045 AAGCTCGCTTGGTCAACAGT 60.179 50.000 2.92 0.00 34.60 3.55
4456 7930 0.882042 AGCTCGCTTGGTCAACAGTG 60.882 55.000 0.00 0.00 0.00 3.66
4457 7931 1.845809 GCTCGCTTGGTCAACAGTGG 61.846 60.000 0.00 0.00 0.00 4.00
4458 7932 1.845809 CTCGCTTGGTCAACAGTGGC 61.846 60.000 0.00 0.00 0.00 5.01
4459 7933 2.639286 GCTTGGTCAACAGTGGCG 59.361 61.111 0.00 0.00 0.00 5.69
4460 7934 2.908073 GCTTGGTCAACAGTGGCGG 61.908 63.158 0.00 0.00 0.00 6.13
4461 7935 2.904866 TTGGTCAACAGTGGCGGC 60.905 61.111 0.00 0.00 0.00 6.53
4464 7938 4.012895 GTCAACAGTGGCGGCGTG 62.013 66.667 9.37 7.07 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.505654 CGTTTTTGTTCAAGGCTATGACACT 60.506 40.000 0.00 0.00 0.00 3.55
177 185 4.088634 CAAACCTCATTTTGGGATGGAGA 58.911 43.478 0.00 0.00 33.53 3.71
186 194 5.860641 GCATAATGCACAAACCTCATTTTG 58.139 37.500 0.00 0.00 44.26 2.44
235 243 4.788679 ACAAATATTTAGGAACGGGGGAG 58.211 43.478 0.00 0.00 0.00 4.30
236 244 4.475747 AGACAAATATTTAGGAACGGGGGA 59.524 41.667 0.00 0.00 0.00 4.81
237 245 4.788679 AGACAAATATTTAGGAACGGGGG 58.211 43.478 0.00 0.00 0.00 5.40
238 246 6.602009 AGAAAGACAAATATTTAGGAACGGGG 59.398 38.462 0.00 0.00 0.00 5.73
239 247 7.625828 AGAAAGACAAATATTTAGGAACGGG 57.374 36.000 0.00 0.00 0.00 5.28
252 260 9.546428 CCATTTGAAACCTTTAGAAAGACAAAT 57.454 29.630 3.52 11.31 38.28 2.32
253 261 8.536175 ACCATTTGAAACCTTTAGAAAGACAAA 58.464 29.630 3.52 9.92 38.28 2.83
254 262 7.978975 CACCATTTGAAACCTTTAGAAAGACAA 59.021 33.333 3.52 2.83 38.28 3.18
255 263 7.340743 TCACCATTTGAAACCTTTAGAAAGACA 59.659 33.333 3.52 0.00 38.28 3.41
256 264 7.648112 GTCACCATTTGAAACCTTTAGAAAGAC 59.352 37.037 3.52 0.00 35.43 3.01
257 265 7.559897 AGTCACCATTTGAAACCTTTAGAAAGA 59.440 33.333 3.52 0.00 35.43 2.52
258 266 7.716612 AGTCACCATTTGAAACCTTTAGAAAG 58.283 34.615 0.00 0.00 35.39 2.62
259 267 7.654022 AGTCACCATTTGAAACCTTTAGAAA 57.346 32.000 0.00 0.00 35.39 2.52
260 268 7.776030 TGTAGTCACCATTTGAAACCTTTAGAA 59.224 33.333 0.00 0.00 35.39 2.10
261 269 7.284074 TGTAGTCACCATTTGAAACCTTTAGA 58.716 34.615 0.00 0.00 35.39 2.10
262 270 7.504924 TGTAGTCACCATTTGAAACCTTTAG 57.495 36.000 0.00 0.00 35.39 1.85
263 271 9.005777 GTATGTAGTCACCATTTGAAACCTTTA 57.994 33.333 0.00 0.00 35.39 1.85
264 272 6.976934 ATGTAGTCACCATTTGAAACCTTT 57.023 33.333 0.00 0.00 35.39 3.11
265 273 6.148811 CGTATGTAGTCACCATTTGAAACCTT 59.851 38.462 0.00 0.00 35.39 3.50
266 274 5.642063 CGTATGTAGTCACCATTTGAAACCT 59.358 40.000 0.00 0.00 35.39 3.50
267 275 5.163794 CCGTATGTAGTCACCATTTGAAACC 60.164 44.000 0.00 0.00 35.39 3.27
268 276 5.640357 TCCGTATGTAGTCACCATTTGAAAC 59.360 40.000 0.00 0.00 35.39 2.78
269 277 5.795972 TCCGTATGTAGTCACCATTTGAAA 58.204 37.500 0.00 0.00 35.39 2.69
270 278 5.408880 TCCGTATGTAGTCACCATTTGAA 57.591 39.130 0.00 0.00 35.39 2.69
271 279 5.172934 GTTCCGTATGTAGTCACCATTTGA 58.827 41.667 0.00 0.00 0.00 2.69
272 280 4.932799 TGTTCCGTATGTAGTCACCATTTG 59.067 41.667 0.00 0.00 0.00 2.32
273 281 5.155278 TGTTCCGTATGTAGTCACCATTT 57.845 39.130 0.00 0.00 0.00 2.32
274 282 4.811969 TGTTCCGTATGTAGTCACCATT 57.188 40.909 0.00 0.00 0.00 3.16
275 283 4.811969 TTGTTCCGTATGTAGTCACCAT 57.188 40.909 0.00 0.00 0.00 3.55
276 284 4.603989 TTTGTTCCGTATGTAGTCACCA 57.396 40.909 0.00 0.00 0.00 4.17
277 285 6.490566 AATTTTGTTCCGTATGTAGTCACC 57.509 37.500 0.00 0.00 0.00 4.02
278 286 8.166706 CACTAATTTTGTTCCGTATGTAGTCAC 58.833 37.037 0.00 0.00 0.00 3.67
279 287 8.089597 TCACTAATTTTGTTCCGTATGTAGTCA 58.910 33.333 0.00 0.00 0.00 3.41
280 288 8.470040 TCACTAATTTTGTTCCGTATGTAGTC 57.530 34.615 0.00 0.00 0.00 2.59
281 289 8.836268 TTCACTAATTTTGTTCCGTATGTAGT 57.164 30.769 0.00 0.00 0.00 2.73
282 290 9.916397 GATTCACTAATTTTGTTCCGTATGTAG 57.084 33.333 0.00 0.00 0.00 2.74
283 291 9.661563 AGATTCACTAATTTTGTTCCGTATGTA 57.338 29.630 0.00 0.00 0.00 2.29
284 292 8.561738 AGATTCACTAATTTTGTTCCGTATGT 57.438 30.769 0.00 0.00 0.00 2.29
285 293 9.916397 GTAGATTCACTAATTTTGTTCCGTATG 57.084 33.333 0.00 0.00 32.49 2.39
286 294 9.661563 TGTAGATTCACTAATTTTGTTCCGTAT 57.338 29.630 0.00 0.00 32.49 3.06
287 295 8.928733 GTGTAGATTCACTAATTTTGTTCCGTA 58.071 33.333 0.00 0.00 35.68 4.02
288 296 7.660208 AGTGTAGATTCACTAATTTTGTTCCGT 59.340 33.333 0.00 0.00 45.31 4.69
289 297 8.029642 AGTGTAGATTCACTAATTTTGTTCCG 57.970 34.615 0.00 0.00 45.31 4.30
290 298 9.220767 AGAGTGTAGATTCACTAATTTTGTTCC 57.779 33.333 0.00 0.00 46.81 3.62
329 337 9.942850 CAAATGGTCACCACATACTGATATATA 57.057 33.333 0.00 0.00 35.80 0.86
330 338 8.659527 TCAAATGGTCACCACATACTGATATAT 58.340 33.333 0.00 0.00 35.80 0.86
331 339 8.028652 TCAAATGGTCACCACATACTGATATA 57.971 34.615 0.00 0.00 35.80 0.86
332 340 6.899089 TCAAATGGTCACCACATACTGATAT 58.101 36.000 0.00 0.00 35.80 1.63
333 341 6.306643 TCAAATGGTCACCACATACTGATA 57.693 37.500 0.00 0.00 35.80 2.15
334 342 5.178096 TCAAATGGTCACCACATACTGAT 57.822 39.130 0.00 0.00 35.80 2.90
335 343 4.632327 TCAAATGGTCACCACATACTGA 57.368 40.909 0.00 0.00 35.80 3.41
336 344 5.703978 TTTCAAATGGTCACCACATACTG 57.296 39.130 0.00 0.00 35.80 2.74
337 345 6.248433 AGATTTCAAATGGTCACCACATACT 58.752 36.000 0.00 0.00 35.80 2.12
338 346 6.375455 AGAGATTTCAAATGGTCACCACATAC 59.625 38.462 0.00 0.00 35.80 2.39
339 347 6.484288 AGAGATTTCAAATGGTCACCACATA 58.516 36.000 0.00 0.00 35.80 2.29
340 348 5.327732 AGAGATTTCAAATGGTCACCACAT 58.672 37.500 0.00 0.00 35.80 3.21
341 349 4.728772 AGAGATTTCAAATGGTCACCACA 58.271 39.130 0.00 0.00 35.80 4.17
342 350 6.173339 TCTAGAGATTTCAAATGGTCACCAC 58.827 40.000 0.00 0.00 35.80 4.16
343 351 6.373005 TCTAGAGATTTCAAATGGTCACCA 57.627 37.500 0.00 0.00 38.19 4.17
344 352 7.607991 TCTTTCTAGAGATTTCAAATGGTCACC 59.392 37.037 0.00 0.00 0.00 4.02
345 353 8.447053 GTCTTTCTAGAGATTTCAAATGGTCAC 58.553 37.037 0.00 0.00 0.00 3.67
346 354 8.156820 TGTCTTTCTAGAGATTTCAAATGGTCA 58.843 33.333 0.00 0.00 0.00 4.02
347 355 8.553459 TGTCTTTCTAGAGATTTCAAATGGTC 57.447 34.615 0.00 0.00 0.00 4.02
348 356 8.924511 TTGTCTTTCTAGAGATTTCAAATGGT 57.075 30.769 0.00 0.00 0.00 3.55
361 369 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
362 370 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
363 371 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
364 372 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
365 373 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
366 374 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
367 375 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
368 376 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
369 377 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
370 378 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
371 379 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
372 380 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
373 381 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
374 382 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
375 383 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
376 384 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
377 385 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
378 386 3.563223 CATCTACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
379 387 2.158505 CCATCTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
380 388 1.411787 CCATCTACTCCCTCCGTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
381 389 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
382 390 1.777941 ACCATCTACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
383 391 2.024655 TGTACCATCTACTCCCTCCGTT 60.025 50.000 0.00 0.00 0.00 4.44
384 392 1.567649 TGTACCATCTACTCCCTCCGT 59.432 52.381 0.00 0.00 0.00 4.69
385 393 2.359981 TGTACCATCTACTCCCTCCG 57.640 55.000 0.00 0.00 0.00 4.63
386 394 3.322254 CACATGTACCATCTACTCCCTCC 59.678 52.174 0.00 0.00 0.00 4.30
387 395 3.961408 ACACATGTACCATCTACTCCCTC 59.039 47.826 0.00 0.00 0.00 4.30
388 396 3.961408 GACACATGTACCATCTACTCCCT 59.039 47.826 0.00 0.00 0.00 4.20
389 397 3.704566 TGACACATGTACCATCTACTCCC 59.295 47.826 0.00 0.00 0.00 4.30
390 398 4.645136 TCTGACACATGTACCATCTACTCC 59.355 45.833 0.00 0.00 0.00 3.85
391 399 5.836821 TCTGACACATGTACCATCTACTC 57.163 43.478 0.00 0.00 0.00 2.59
392 400 6.609212 AGATTCTGACACATGTACCATCTACT 59.391 38.462 0.00 0.00 0.00 2.57
393 401 6.810911 AGATTCTGACACATGTACCATCTAC 58.189 40.000 0.00 0.00 0.00 2.59
394 402 8.414003 GTTAGATTCTGACACATGTACCATCTA 58.586 37.037 0.00 2.13 0.00 1.98
395 403 5.946942 AGATTCTGACACATGTACCATCT 57.053 39.130 0.00 0.00 0.00 2.90
399 407 4.804139 CCGTTAGATTCTGACACATGTACC 59.196 45.833 0.00 0.00 0.00 3.34
420 428 4.393062 GCATTGGATACCATATTCACTCCG 59.607 45.833 0.00 0.00 31.53 4.63
487 877 7.201496 CGACACCTACAACACCAAATTAGTATC 60.201 40.741 0.00 0.00 0.00 2.24
600 1033 7.391554 GCTCCAATTATATGCCATCTAAACAGA 59.608 37.037 0.00 0.00 0.00 3.41
627 1063 2.239654 ACCGACCATCACAGATCCAAAT 59.760 45.455 0.00 0.00 0.00 2.32
646 1082 4.398673 ACAATGGAAGAGAGTAGTACGACC 59.601 45.833 2.14 0.00 0.00 4.79
651 1087 6.316640 CGAGAGAACAATGGAAGAGAGTAGTA 59.683 42.308 0.00 0.00 0.00 1.82
652 1088 5.124776 CGAGAGAACAATGGAAGAGAGTAGT 59.875 44.000 0.00 0.00 0.00 2.73
653 1089 5.355630 TCGAGAGAACAATGGAAGAGAGTAG 59.644 44.000 0.00 0.00 37.03 2.57
714 1150 1.025812 GGTCCGATCACAGACGATCT 58.974 55.000 0.00 0.00 39.78 2.75
719 1155 2.478989 TCGAGGTCCGATCACAGAC 58.521 57.895 0.00 0.00 43.23 3.51
738 1174 1.045407 ACAAGTACAACAGCCGGAGA 58.955 50.000 5.05 0.00 0.00 3.71
750 1186 8.289618 TGCTTTTCATTCATTCTACACAAGTAC 58.710 33.333 0.00 0.00 0.00 2.73
754 1190 6.917477 GTGTGCTTTTCATTCATTCTACACAA 59.083 34.615 0.00 0.00 36.22 3.33
756 1192 6.360681 GTGTGTGCTTTTCATTCATTCTACAC 59.639 38.462 0.00 0.00 36.26 2.90
757 1193 6.437928 GTGTGTGCTTTTCATTCATTCTACA 58.562 36.000 0.00 0.00 0.00 2.74
759 1195 5.534278 TGGTGTGTGCTTTTCATTCATTCTA 59.466 36.000 0.00 0.00 0.00 2.10
785 1227 2.997897 GAGTCGGAGGGGCACTGT 60.998 66.667 0.00 0.00 0.00 3.55
805 1247 0.817654 TCGGGATATATGCTGCGGAG 59.182 55.000 8.14 0.00 0.00 4.63
806 1248 0.530744 GTCGGGATATATGCTGCGGA 59.469 55.000 8.14 0.00 0.00 5.54
904 1347 1.569479 GGAGAAAGGACTGCGCACAC 61.569 60.000 5.66 2.77 0.00 3.82
1308 1767 0.321671 GCTACAGTGGCAGAACCTCA 59.678 55.000 3.57 0.00 40.22 3.86
1738 2493 1.739466 CATGCACGCAACACCTTAGAT 59.261 47.619 0.00 0.00 0.00 1.98
2225 5051 6.239458 CCAGTTTTGGGCTATTTACCTTTTGA 60.239 38.462 0.00 0.00 41.05 2.69
2266 5092 2.349438 CGGCATTGCGGTGTATTATGAC 60.349 50.000 7.96 0.00 0.00 3.06
2312 5145 5.356751 TCCAATTTCCGAACATGTCCAATAG 59.643 40.000 0.00 0.00 0.00 1.73
2767 5775 2.029020 TGTGTCACTGAGGTCATACTGC 60.029 50.000 4.27 0.00 0.00 4.40
3188 6196 4.135306 CCTGCTAGCTCATTCATCACATT 58.865 43.478 17.23 0.00 0.00 2.71
3214 6222 1.079819 AGCAGAACCATCGACACCG 60.080 57.895 0.00 0.00 37.07 4.94
3271 6279 5.113383 GCTGGCAAAATCATGAAATCATCA 58.887 37.500 0.00 0.00 43.67 3.07
3296 6304 2.744202 CGAGTGCTTTACCATTCTTGCT 59.256 45.455 0.00 0.00 0.00 3.91
3408 6426 5.235186 CGAATTCTTGATCGATGGTTAGCTT 59.765 40.000 0.54 0.00 41.43 3.74
3477 6495 6.707440 TCAACACTTCAAGGAAGCAAATTA 57.293 33.333 5.92 0.00 42.79 1.40
3486 6504 7.035004 CAGAACATTTTTCAACACTTCAAGGA 58.965 34.615 0.00 0.00 0.00 3.36
3540 6560 1.843851 CCAATGGTAGCCCCTACTTGA 59.156 52.381 0.00 0.00 37.16 3.02
3546 6566 0.253160 TGACTCCAATGGTAGCCCCT 60.253 55.000 0.00 0.00 0.00 4.79
3711 6743 2.566913 TGAAAGGAACACGCTGCTTAA 58.433 42.857 0.00 0.00 0.00 1.85
3743 6775 4.384647 GGCTTCCTTACAGATCCATTCAGT 60.385 45.833 0.00 0.00 0.00 3.41
3783 6815 6.465149 CCAATAGCGTAATCTATAGTTCGACG 59.535 42.308 0.00 6.72 0.00 5.12
3815 6847 2.185310 AACAAGTCTAGGCAGGCGGG 62.185 60.000 0.00 0.00 0.00 6.13
3863 6895 7.537596 TGACACATTTCAACCTTCCAAATAT 57.462 32.000 0.00 0.00 0.00 1.28
3959 6991 4.437682 ACCAAAGGACAACTCTGAATCA 57.562 40.909 0.00 0.00 0.00 2.57
3960 6992 5.412904 CCTAACCAAAGGACAACTCTGAATC 59.587 44.000 0.00 0.00 39.15 2.52
3961 6993 5.163088 ACCTAACCAAAGGACAACTCTGAAT 60.163 40.000 0.00 0.00 39.15 2.57
3962 6994 4.165372 ACCTAACCAAAGGACAACTCTGAA 59.835 41.667 0.00 0.00 39.15 3.02
3964 6996 3.815401 CACCTAACCAAAGGACAACTCTG 59.185 47.826 0.00 0.00 39.15 3.35
3965 6997 3.181443 CCACCTAACCAAAGGACAACTCT 60.181 47.826 0.00 0.00 39.15 3.24
3966 6998 3.146847 CCACCTAACCAAAGGACAACTC 58.853 50.000 0.00 0.00 39.15 3.01
3967 6999 2.751816 GCCACCTAACCAAAGGACAACT 60.752 50.000 0.00 0.00 39.15 3.16
3968 7000 1.611977 GCCACCTAACCAAAGGACAAC 59.388 52.381 0.00 0.00 39.15 3.32
3969 7001 1.479757 GGCCACCTAACCAAAGGACAA 60.480 52.381 0.00 0.00 39.15 3.18
3971 7003 0.404426 AGGCCACCTAACCAAAGGAC 59.596 55.000 5.01 0.00 39.15 3.85
3972 7004 2.047769 TAGGCCACCTAACCAAAGGA 57.952 50.000 5.01 0.00 39.15 3.36
3973 7005 2.891191 TTAGGCCACCTAACCAAAGG 57.109 50.000 5.01 0.00 40.71 3.11
3981 7013 1.343985 TGCAGGAGATTAGGCCACCTA 60.344 52.381 5.01 0.00 34.61 3.08
3982 7014 0.621571 TGCAGGAGATTAGGCCACCT 60.622 55.000 5.01 0.32 37.71 4.00
3983 7015 0.464554 GTGCAGGAGATTAGGCCACC 60.465 60.000 5.01 0.00 0.00 4.61
3984 7016 0.464554 GGTGCAGGAGATTAGGCCAC 60.465 60.000 5.01 0.00 0.00 5.01
3985 7017 1.635817 GGGTGCAGGAGATTAGGCCA 61.636 60.000 5.01 0.00 0.00 5.36
3986 7018 1.149401 GGGTGCAGGAGATTAGGCC 59.851 63.158 0.00 0.00 0.00 5.19
3987 7019 0.464554 GTGGGTGCAGGAGATTAGGC 60.465 60.000 0.00 0.00 0.00 3.93
3988 7020 0.179073 CGTGGGTGCAGGAGATTAGG 60.179 60.000 0.00 0.00 0.00 2.69
3989 7021 0.811616 GCGTGGGTGCAGGAGATTAG 60.812 60.000 0.00 0.00 34.15 1.73
3990 7022 1.220749 GCGTGGGTGCAGGAGATTA 59.779 57.895 0.00 0.00 34.15 1.75
3991 7023 2.045926 GCGTGGGTGCAGGAGATT 60.046 61.111 0.00 0.00 34.15 2.40
3992 7024 4.101448 GGCGTGGGTGCAGGAGAT 62.101 66.667 0.00 0.00 36.28 2.75
4028 7060 3.462678 GAGGAGTGGGAGGTCCGC 61.463 72.222 0.00 0.00 46.19 5.54
4029 7061 2.037367 TGAGGAGTGGGAGGTCCG 59.963 66.667 0.00 0.00 37.97 4.79
4030 7062 1.079438 AGTGAGGAGTGGGAGGTCC 59.921 63.158 0.00 0.00 0.00 4.46
4031 7063 1.893919 GCAGTGAGGAGTGGGAGGTC 61.894 65.000 0.00 0.00 0.00 3.85
4032 7064 1.915769 GCAGTGAGGAGTGGGAGGT 60.916 63.158 0.00 0.00 0.00 3.85
4033 7065 2.985456 GCAGTGAGGAGTGGGAGG 59.015 66.667 0.00 0.00 0.00 4.30
4034 7066 2.575993 CGCAGTGAGGAGTGGGAG 59.424 66.667 0.00 0.00 37.61 4.30
4035 7067 3.695606 GCGCAGTGAGGAGTGGGA 61.696 66.667 0.30 0.00 37.61 4.37
4036 7068 4.767255 GGCGCAGTGAGGAGTGGG 62.767 72.222 10.83 0.00 38.27 4.61
4038 7070 4.363990 ACGGCGCAGTGAGGAGTG 62.364 66.667 13.72 0.00 0.00 3.51
4039 7071 4.363990 CACGGCGCAGTGAGGAGT 62.364 66.667 32.96 5.11 44.43 3.85
4040 7072 4.056125 TCACGGCGCAGTGAGGAG 62.056 66.667 34.45 13.46 45.18 3.69
4045 7077 2.040213 GAATGGATCACGGCGCAGTG 62.040 60.000 31.14 31.14 43.11 3.66
4046 7078 1.815421 GAATGGATCACGGCGCAGT 60.815 57.895 10.83 9.16 0.00 4.40
4047 7079 2.537560 GGAATGGATCACGGCGCAG 61.538 63.158 10.83 8.25 0.00 5.18
4048 7080 2.513666 GGAATGGATCACGGCGCA 60.514 61.111 10.83 0.00 0.00 6.09
4049 7081 3.640000 CGGAATGGATCACGGCGC 61.640 66.667 6.90 0.00 0.00 6.53
4050 7082 2.967076 CCGGAATGGATCACGGCG 60.967 66.667 4.80 4.80 42.00 6.46
4051 7083 2.504032 TCCGGAATGGATCACGGC 59.496 61.111 0.00 0.00 43.74 5.68
4067 7099 4.927782 TGTGGTGGCCGCTGTGTC 62.928 66.667 17.49 0.00 34.70 3.67
4068 7100 3.790416 ATTGTGGTGGCCGCTGTGT 62.790 57.895 17.49 0.00 34.70 3.72
4069 7101 2.985282 ATTGTGGTGGCCGCTGTG 60.985 61.111 17.49 0.00 34.70 3.66
4070 7102 2.985282 CATTGTGGTGGCCGCTGT 60.985 61.111 17.49 0.00 34.70 4.40
4071 7103 2.981560 GACATTGTGGTGGCCGCTG 61.982 63.158 17.49 8.67 34.70 5.18
4072 7104 2.672996 GACATTGTGGTGGCCGCT 60.673 61.111 17.49 0.00 34.70 5.52
4073 7105 3.747976 GGACATTGTGGTGGCCGC 61.748 66.667 8.12 8.12 37.58 6.53
4076 7108 1.875963 CGAAGGACATTGTGGTGGC 59.124 57.895 0.00 0.00 0.00 5.01
4167 7621 4.473520 CCTGGGCCTCGCACGATT 62.474 66.667 4.53 0.00 32.76 3.34
4215 7669 2.823593 TGTCGATGGGGCAATGCG 60.824 61.111 0.00 0.00 0.00 4.73
4226 7700 3.188100 CGTGCATGGCGTGTCGAT 61.188 61.111 16.79 0.00 32.28 3.59
4234 7708 2.438434 AGGCCTAACGTGCATGGC 60.438 61.111 1.29 9.62 44.22 4.40
4238 7712 3.246112 ACCCAGGCCTAACGTGCA 61.246 61.111 3.98 0.00 32.66 4.57
4290 7764 3.193479 GGAAGTTGGGCCTGAAAATACAG 59.807 47.826 4.53 0.00 37.61 2.74
4299 7773 0.395724 GGGTATGGAAGTTGGGCCTG 60.396 60.000 4.53 0.00 0.00 4.85
4300 7774 1.921869 CGGGTATGGAAGTTGGGCCT 61.922 60.000 4.53 0.00 0.00 5.19
4301 7775 1.453197 CGGGTATGGAAGTTGGGCC 60.453 63.158 0.00 0.00 0.00 5.80
4302 7776 2.119029 GCGGGTATGGAAGTTGGGC 61.119 63.158 0.00 0.00 0.00 5.36
4303 7777 1.029947 GTGCGGGTATGGAAGTTGGG 61.030 60.000 0.00 0.00 0.00 4.12
4304 7778 1.366111 CGTGCGGGTATGGAAGTTGG 61.366 60.000 0.00 0.00 0.00 3.77
4305 7779 0.390603 TCGTGCGGGTATGGAAGTTG 60.391 55.000 0.00 0.00 0.00 3.16
4306 7780 0.390735 GTCGTGCGGGTATGGAAGTT 60.391 55.000 0.00 0.00 0.00 2.66
4307 7781 1.217244 GTCGTGCGGGTATGGAAGT 59.783 57.895 0.00 0.00 0.00 3.01
4308 7782 1.520787 GGTCGTGCGGGTATGGAAG 60.521 63.158 0.00 0.00 0.00 3.46
4309 7783 2.580276 GGTCGTGCGGGTATGGAA 59.420 61.111 0.00 0.00 0.00 3.53
4310 7784 3.463585 GGGTCGTGCGGGTATGGA 61.464 66.667 0.00 0.00 0.00 3.41
4311 7785 4.884257 CGGGTCGTGCGGGTATGG 62.884 72.222 0.00 0.00 0.00 2.74
4312 7786 3.652539 AACGGGTCGTGCGGGTATG 62.653 63.158 0.00 0.00 39.99 2.39
4313 7787 1.603236 TAAACGGGTCGTGCGGGTAT 61.603 55.000 0.00 0.00 39.99 2.73
4314 7788 1.810606 TTAAACGGGTCGTGCGGGTA 61.811 55.000 0.00 0.00 39.99 3.69
4315 7789 3.162505 TTAAACGGGTCGTGCGGGT 62.163 57.895 0.00 0.00 39.99 5.28
4316 7790 2.357275 TTAAACGGGTCGTGCGGG 60.357 61.111 0.00 0.00 39.99 6.13
4317 7791 2.670210 GGTTAAACGGGTCGTGCGG 61.670 63.158 0.00 0.00 39.99 5.69
4318 7792 2.670210 GGGTTAAACGGGTCGTGCG 61.670 63.158 0.00 0.00 39.99 5.34
4319 7793 0.956902 ATGGGTTAAACGGGTCGTGC 60.957 55.000 0.00 0.00 39.99 5.34
4320 7794 0.800012 CATGGGTTAAACGGGTCGTG 59.200 55.000 0.00 0.00 39.99 4.35
4321 7795 0.397564 ACATGGGTTAAACGGGTCGT 59.602 50.000 0.00 0.00 43.97 4.34
4322 7796 1.081094 GACATGGGTTAAACGGGTCG 58.919 55.000 0.00 0.00 0.00 4.79
4323 7797 1.081094 CGACATGGGTTAAACGGGTC 58.919 55.000 0.00 0.00 0.00 4.46
4324 7798 0.397564 ACGACATGGGTTAAACGGGT 59.602 50.000 0.00 0.00 0.00 5.28
4325 7799 0.800012 CACGACATGGGTTAAACGGG 59.200 55.000 0.00 0.00 0.00 5.28
4326 7800 1.461897 GACACGACATGGGTTAAACGG 59.538 52.381 0.00 0.00 0.00 4.44
4327 7801 1.125384 CGACACGACATGGGTTAAACG 59.875 52.381 0.00 0.00 0.00 3.60
4328 7802 2.137523 ACGACACGACATGGGTTAAAC 58.862 47.619 0.00 0.00 0.00 2.01
4329 7803 2.529780 ACGACACGACATGGGTTAAA 57.470 45.000 0.00 0.00 0.00 1.52
4330 7804 3.872511 ATACGACACGACATGGGTTAA 57.127 42.857 0.00 0.00 0.00 2.01
4331 7805 3.872511 AATACGACACGACATGGGTTA 57.127 42.857 0.00 0.00 0.00 2.85
4332 7806 2.739913 CAAATACGACACGACATGGGTT 59.260 45.455 0.00 0.00 0.00 4.11
4333 7807 2.343101 CAAATACGACACGACATGGGT 58.657 47.619 0.00 0.00 0.00 4.51
4334 7808 1.663643 CCAAATACGACACGACATGGG 59.336 52.381 0.00 0.00 0.00 4.00
4335 7809 1.062002 GCCAAATACGACACGACATGG 59.938 52.381 0.00 0.00 0.00 3.66
4336 7810 1.729517 TGCCAAATACGACACGACATG 59.270 47.619 0.00 0.00 0.00 3.21
4337 7811 2.087501 TGCCAAATACGACACGACAT 57.912 45.000 0.00 0.00 0.00 3.06
4338 7812 1.729517 CATGCCAAATACGACACGACA 59.270 47.619 0.00 0.00 0.00 4.35
4339 7813 1.529010 GCATGCCAAATACGACACGAC 60.529 52.381 6.36 0.00 0.00 4.34
4340 7814 0.724549 GCATGCCAAATACGACACGA 59.275 50.000 6.36 0.00 0.00 4.35
4341 7815 0.726827 AGCATGCCAAATACGACACG 59.273 50.000 15.66 0.00 0.00 4.49
4342 7816 2.286418 GCTAGCATGCCAAATACGACAC 60.286 50.000 15.66 0.00 0.00 3.67
4343 7817 1.939934 GCTAGCATGCCAAATACGACA 59.060 47.619 15.66 0.00 0.00 4.35
4344 7818 1.070577 CGCTAGCATGCCAAATACGAC 60.071 52.381 15.66 0.00 0.00 4.34
4345 7819 1.217001 CGCTAGCATGCCAAATACGA 58.783 50.000 15.66 0.00 0.00 3.43
4346 7820 0.235665 CCGCTAGCATGCCAAATACG 59.764 55.000 15.66 9.92 0.00 3.06
4347 7821 0.593128 CCCGCTAGCATGCCAAATAC 59.407 55.000 15.66 0.00 0.00 1.89
4348 7822 1.172180 GCCCGCTAGCATGCCAAATA 61.172 55.000 15.66 0.00 0.00 1.40
4349 7823 2.492773 GCCCGCTAGCATGCCAAAT 61.493 57.895 15.66 0.00 0.00 2.32
4350 7824 3.140141 GCCCGCTAGCATGCCAAA 61.140 61.111 15.66 0.00 0.00 3.28
4367 7841 4.181010 ATGTGCTAGCAGGGCCGG 62.181 66.667 20.03 0.00 0.00 6.13
4368 7842 2.590007 GATGTGCTAGCAGGGCCG 60.590 66.667 20.03 0.00 0.00 6.13
4369 7843 2.203266 GGATGTGCTAGCAGGGCC 60.203 66.667 20.03 15.35 0.00 5.80
4370 7844 2.203266 GGGATGTGCTAGCAGGGC 60.203 66.667 20.03 7.32 0.00 5.19
4371 7845 1.147824 CTGGGATGTGCTAGCAGGG 59.852 63.158 20.03 0.00 0.00 4.45
4372 7846 0.763652 ATCTGGGATGTGCTAGCAGG 59.236 55.000 20.03 2.89 0.00 4.85
4373 7847 1.880271 CATCTGGGATGTGCTAGCAG 58.120 55.000 20.03 4.41 0.00 4.24
4374 7848 0.179037 GCATCTGGGATGTGCTAGCA 60.179 55.000 14.93 14.93 36.02 3.49
4375 7849 0.888285 GGCATCTGGGATGTGCTAGC 60.888 60.000 8.10 8.10 38.83 3.42
4376 7850 0.250640 GGGCATCTGGGATGTGCTAG 60.251 60.000 8.93 0.00 38.83 3.42
4377 7851 0.987613 TGGGCATCTGGGATGTGCTA 60.988 55.000 8.93 0.00 38.83 3.49
4378 7852 2.280404 CTGGGCATCTGGGATGTGCT 62.280 60.000 8.93 0.00 38.83 4.40
4379 7853 1.826921 CTGGGCATCTGGGATGTGC 60.827 63.158 8.93 0.00 38.12 4.57
4380 7854 1.152819 CCTGGGCATCTGGGATGTG 60.153 63.158 8.93 0.00 0.00 3.21
4381 7855 1.217057 AACCTGGGCATCTGGGATGT 61.217 55.000 0.00 0.00 38.62 3.06
4382 7856 0.032813 AAACCTGGGCATCTGGGATG 60.033 55.000 0.00 3.44 38.62 3.51
4383 7857 0.032813 CAAACCTGGGCATCTGGGAT 60.033 55.000 0.00 0.00 38.62 3.85
4384 7858 1.383799 CAAACCTGGGCATCTGGGA 59.616 57.895 0.00 0.00 38.62 4.37
4385 7859 2.353610 GCAAACCTGGGCATCTGGG 61.354 63.158 0.00 0.00 38.62 4.45
4386 7860 0.901580 AAGCAAACCTGGGCATCTGG 60.902 55.000 0.00 0.00 39.98 3.86
4387 7861 0.245539 CAAGCAAACCTGGGCATCTG 59.754 55.000 0.00 0.00 0.00 2.90
4388 7862 0.178953 ACAAGCAAACCTGGGCATCT 60.179 50.000 0.00 0.00 0.00 2.90
4389 7863 0.681175 AACAAGCAAACCTGGGCATC 59.319 50.000 0.00 0.00 0.00 3.91
4390 7864 0.681175 GAACAAGCAAACCTGGGCAT 59.319 50.000 0.00 0.00 0.00 4.40
4391 7865 1.398958 GGAACAAGCAAACCTGGGCA 61.399 55.000 0.00 0.00 0.00 5.36
4392 7866 1.367471 GGAACAAGCAAACCTGGGC 59.633 57.895 0.00 0.00 0.00 5.36
4393 7867 1.805428 CGGGAACAAGCAAACCTGGG 61.805 60.000 0.00 0.00 0.00 4.45
4394 7868 1.659794 CGGGAACAAGCAAACCTGG 59.340 57.895 0.00 0.00 0.00 4.45
4395 7869 1.007387 GCGGGAACAAGCAAACCTG 60.007 57.895 0.00 0.00 33.90 4.00
4396 7870 2.200337 GGCGGGAACAAGCAAACCT 61.200 57.895 0.00 0.00 35.33 3.50
4397 7871 2.338620 GGCGGGAACAAGCAAACC 59.661 61.111 0.00 0.00 35.33 3.27
4398 7872 1.299850 GTGGCGGGAACAAGCAAAC 60.300 57.895 0.00 0.00 35.33 2.93
4399 7873 1.323271 TTGTGGCGGGAACAAGCAAA 61.323 50.000 0.00 0.00 32.71 3.68
4400 7874 1.733402 CTTGTGGCGGGAACAAGCAA 61.733 55.000 3.60 0.00 45.68 3.91
4401 7875 2.124109 TTGTGGCGGGAACAAGCA 60.124 55.556 0.00 0.00 32.71 3.91
4402 7876 2.644992 CTTGTGGCGGGAACAAGC 59.355 61.111 3.60 0.00 45.68 4.01
4404 7878 0.759959 TACTCTTGTGGCGGGAACAA 59.240 50.000 0.00 0.00 36.19 2.83
4405 7879 0.034337 GTACTCTTGTGGCGGGAACA 59.966 55.000 0.00 0.00 0.00 3.18
4406 7880 0.034337 TGTACTCTTGTGGCGGGAAC 59.966 55.000 0.00 0.00 0.00 3.62
4407 7881 0.034337 GTGTACTCTTGTGGCGGGAA 59.966 55.000 0.00 0.00 0.00 3.97
4408 7882 1.669440 GTGTACTCTTGTGGCGGGA 59.331 57.895 0.00 0.00 0.00 5.14
4409 7883 1.375523 GGTGTACTCTTGTGGCGGG 60.376 63.158 0.00 0.00 0.00 6.13
4410 7884 0.389948 GAGGTGTACTCTTGTGGCGG 60.390 60.000 0.00 0.00 43.14 6.13
4411 7885 3.123674 GAGGTGTACTCTTGTGGCG 57.876 57.895 0.00 0.00 43.14 5.69
4426 7900 2.125350 GCGAGCTTCACCCAGAGG 60.125 66.667 0.00 0.00 40.04 3.69
4427 7901 1.018226 CAAGCGAGCTTCACCCAGAG 61.018 60.000 7.44 0.00 33.42 3.35
4428 7902 1.004560 CAAGCGAGCTTCACCCAGA 60.005 57.895 7.44 0.00 33.42 3.86
4429 7903 2.037136 CCAAGCGAGCTTCACCCAG 61.037 63.158 7.44 0.00 33.42 4.45
4430 7904 2.032528 CCAAGCGAGCTTCACCCA 59.967 61.111 7.44 0.00 33.42 4.51
4431 7905 2.032681 ACCAAGCGAGCTTCACCC 59.967 61.111 7.44 0.00 33.42 4.61
4432 7906 0.884704 TTGACCAAGCGAGCTTCACC 60.885 55.000 7.44 0.79 33.42 4.02
4433 7907 0.235926 GTTGACCAAGCGAGCTTCAC 59.764 55.000 7.44 3.39 33.42 3.18
4434 7908 0.179059 TGTTGACCAAGCGAGCTTCA 60.179 50.000 7.44 0.51 33.42 3.02
4435 7909 0.514691 CTGTTGACCAAGCGAGCTTC 59.485 55.000 7.44 0.00 33.42 3.86
4436 7910 0.179045 ACTGTTGACCAAGCGAGCTT 60.179 50.000 4.26 4.26 36.60 3.74
4437 7911 0.882042 CACTGTTGACCAAGCGAGCT 60.882 55.000 0.00 0.00 0.00 4.09
4438 7912 1.571460 CACTGTTGACCAAGCGAGC 59.429 57.895 0.00 0.00 0.00 5.03
4439 7913 1.845809 GCCACTGTTGACCAAGCGAG 61.846 60.000 0.00 0.00 0.00 5.03
4440 7914 1.891919 GCCACTGTTGACCAAGCGA 60.892 57.895 0.00 0.00 0.00 4.93
4441 7915 2.639286 GCCACTGTTGACCAAGCG 59.361 61.111 0.00 0.00 0.00 4.68
4442 7916 2.639286 CGCCACTGTTGACCAAGC 59.361 61.111 0.00 0.00 0.00 4.01
4443 7917 2.908073 GCCGCCACTGTTGACCAAG 61.908 63.158 0.00 0.00 0.00 3.61
4444 7918 2.904866 GCCGCCACTGTTGACCAA 60.905 61.111 0.00 0.00 0.00 3.67
4447 7921 4.012895 CACGCCGCCACTGTTGAC 62.013 66.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.