Multiple sequence alignment - TraesCS4D01G209100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G209100 chr4D 100.000 7017 0 0 1 7017 360498404 360491388 0.000000e+00 12959.0
1 TraesCS4D01G209100 chr4A 94.906 6341 210 41 1 6287 104374548 104380829 0.000000e+00 9816.0
2 TraesCS4D01G209100 chr4A 89.173 508 49 3 6515 7017 104381214 104381720 4.620000e-176 628.0
3 TraesCS4D01G209100 chr4A 84.815 270 37 2 6211 6480 104380832 104381097 1.160000e-67 268.0
4 TraesCS4D01G209100 chr4A 78.571 364 64 11 6126 6484 458251918 458252272 1.970000e-55 228.0
5 TraesCS4D01G209100 chr4A 78.297 364 65 10 6126 6484 458534919 458535273 9.160000e-54 222.0
6 TraesCS4D01G209100 chr4B 97.405 4046 91 9 2178 6215 445277067 445273028 0.000000e+00 6878.0
7 TraesCS4D01G209100 chr4B 86.930 1997 135 61 177 2130 445278975 445277062 0.000000e+00 2126.0
8 TraesCS4D01G209100 chr4B 89.402 368 37 2 6512 6879 665294184 665293819 4.960000e-126 462.0
9 TraesCS4D01G209100 chr4B 88.859 368 38 3 6512 6879 522338694 522339058 3.860000e-122 449.0
10 TraesCS4D01G209100 chr4B 84.259 108 16 1 1 107 445279114 445279007 3.460000e-18 104.0
11 TraesCS4D01G209100 chr3B 89.160 369 38 2 6512 6880 824304688 824305054 6.410000e-125 459.0
12 TraesCS4D01G209100 chr3B 78.571 336 56 12 6152 6486 566191920 566192240 2.570000e-49 207.0
13 TraesCS4D01G209100 chr3D 88.889 369 39 2 6511 6879 607059032 607058666 2.980000e-123 453.0
14 TraesCS4D01G209100 chr3D 80.539 334 63 2 6153 6486 61771309 61770978 9.030000e-64 255.0
15 TraesCS4D01G209100 chrUn 88.859 368 39 2 6512 6879 263185660 263185295 1.070000e-122 451.0
16 TraesCS4D01G209100 chrUn 88.587 368 40 2 6512 6879 50437971 50438336 4.990000e-121 446.0
17 TraesCS4D01G209100 chrUn 97.059 34 0 1 13 46 234091656 234091624 1.000000e-03 56.5
18 TraesCS4D01G209100 chr1B 88.828 367 39 2 6512 6878 94009498 94009134 3.860000e-122 449.0
19 TraesCS4D01G209100 chr1B 76.923 143 28 5 203 342 310399075 310398935 7.550000e-10 76.8
20 TraesCS4D01G209100 chr5A 88.410 371 41 2 6512 6882 545051602 545051234 4.990000e-121 446.0
21 TraesCS4D01G209100 chr5A 77.159 359 74 5 6132 6486 489795858 489795504 1.190000e-47 202.0
22 TraesCS4D01G209100 chr5B 81.138 334 59 4 6152 6484 6507758 6508088 1.500000e-66 265.0
23 TraesCS4D01G209100 chr5B 85.542 83 12 0 6155 6237 182040075 182039993 3.490000e-13 87.9
24 TraesCS4D01G209100 chr2D 77.679 336 46 17 6151 6485 553720695 553720388 2.010000e-40 178.0
25 TraesCS4D01G209100 chr2D 79.608 255 36 8 6234 6485 81978139 81977898 1.210000e-37 169.0
26 TraesCS4D01G209100 chr6D 81.657 169 26 4 6312 6479 172115805 172115969 1.230000e-27 135.0
27 TraesCS4D01G209100 chr6A 83.333 96 13 3 247 340 525573304 525573398 1.250000e-12 86.1
28 TraesCS4D01G209100 chr7D 79.381 97 16 4 1 95 623789478 623789572 1.630000e-06 65.8
29 TraesCS4D01G209100 chr6B 97.059 34 0 1 13 46 154171465 154171433 1.000000e-03 56.5
30 TraesCS4D01G209100 chr1A 94.595 37 1 1 13 48 372283721 372283685 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G209100 chr4D 360491388 360498404 7016 True 12959.000000 12959 100.000000 1 7017 1 chr4D.!!$R1 7016
1 TraesCS4D01G209100 chr4A 104374548 104381720 7172 False 3570.666667 9816 89.631333 1 7017 3 chr4A.!!$F3 7016
2 TraesCS4D01G209100 chr4B 445273028 445279114 6086 True 3036.000000 6878 89.531333 1 6215 3 chr4B.!!$R2 6214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 174 0.034089 GAACACCTCCTCCATTGGGG 60.034 60.000 2.09 0.0 38.37 4.96 F
640 647 0.457853 TCTGTAGTGACCGATTGCGC 60.458 55.000 0.00 0.0 35.83 6.09 F
1267 1310 0.477597 TGGGGGAAGTGGAGGACATT 60.478 55.000 0.00 0.0 0.00 2.71 F
1514 1559 1.842562 ACATCCACAGCTGGCTTCTAT 59.157 47.619 19.93 0.0 37.49 1.98 F
1585 1630 2.075355 TTGGGTGCTGGGGAACGATT 62.075 55.000 0.00 0.0 0.00 3.34 F
2166 2232 2.532250 AAAGGGCCATAGGGAAACTG 57.468 50.000 6.18 0.0 35.59 3.16 F
3390 3458 1.516864 CGCGTTGCTTGTTTTTCTTCC 59.483 47.619 0.00 0.0 0.00 3.46 F
4338 4409 4.143986 TGTATTGCGTATCATTCACCCA 57.856 40.909 0.00 0.0 0.00 4.51 F
4382 4456 1.074752 CGCCAGAGTCTGAAGCTTTC 58.925 55.000 22.09 0.0 32.44 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1559 0.037590 ACTGCTACGCCCCAATCAAA 59.962 50.000 0.0 0.0 0.00 2.69 R
1520 1565 0.978151 TCTAAAACTGCTACGCCCCA 59.022 50.000 0.0 0.0 0.00 4.96 R
2072 2134 2.890311 CCTACCAGCAACAAATTGTCCA 59.110 45.455 0.0 0.0 38.17 4.02 R
3373 3441 3.819564 AGGGGAAGAAAAACAAGCAAC 57.180 42.857 0.0 0.0 0.00 4.17 R
3390 3458 5.010282 ACATAAACCAGCAAGAAAGTAGGG 58.990 41.667 0.0 0.0 0.00 3.53 R
4114 4184 6.651225 AGAGTATTTGCACAGAAAGAAGGTAC 59.349 38.462 0.0 0.0 0.00 3.34 R
4350 4421 0.322456 TCTGGCGTGGAATTTGAGGG 60.322 55.000 0.0 0.0 0.00 4.30 R
5238 5313 0.329261 CAGGGGGCATCAGACTTCAA 59.671 55.000 0.0 0.0 0.00 2.69 R
6377 6535 0.320374 TACCCGCTTGAACAGACCAG 59.680 55.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.320697 GAGGTTGAGGTTGTACCGCT 59.679 55.000 1.44 0.00 44.90 5.52
45 46 4.634703 TCCTGCGCCTGCCGAAAA 62.635 61.111 4.18 0.00 41.78 2.29
95 97 0.309302 CCGCCATGACAACGTTGAAA 59.691 50.000 33.66 20.66 0.00 2.69
102 104 0.872388 GACAACGTTGAAATCCGCCT 59.128 50.000 33.66 8.67 0.00 5.52
118 120 2.182842 CCTGCGCCTACTTCATGGC 61.183 63.158 4.18 0.00 45.25 4.40
168 170 1.002087 GTGTCGAACACCTCCTCCATT 59.998 52.381 6.82 0.00 43.05 3.16
170 172 0.613260 TCGAACACCTCCTCCATTGG 59.387 55.000 0.00 0.00 0.00 3.16
171 173 0.392998 CGAACACCTCCTCCATTGGG 60.393 60.000 2.09 0.00 0.00 4.12
172 174 0.034089 GAACACCTCCTCCATTGGGG 60.034 60.000 2.09 0.00 38.37 4.96
210 212 3.181967 CCTTCGGCGAGCTCGTTG 61.182 66.667 34.46 26.41 42.22 4.10
236 238 0.538584 CAGCCTCTATCCAGTGTGCA 59.461 55.000 0.00 0.00 0.00 4.57
242 244 1.136891 TCTATCCAGTGTGCATGACGG 59.863 52.381 0.00 0.00 0.00 4.79
341 347 1.376466 GTCATGGCAGAGGTGGTGT 59.624 57.895 0.00 0.00 0.00 4.16
363 369 2.749621 ACGGATGAGGAAATGAAACAGC 59.250 45.455 0.00 0.00 0.00 4.40
364 370 2.098117 CGGATGAGGAAATGAAACAGCC 59.902 50.000 0.00 0.00 34.32 4.85
375 381 1.165270 GAAACAGCCGTGGTGCTATT 58.835 50.000 3.45 0.00 40.32 1.73
376 382 1.539827 GAAACAGCCGTGGTGCTATTT 59.460 47.619 3.45 0.00 40.47 1.40
399 405 2.282391 GTGCCTGGCATGACCACA 60.282 61.111 26.22 0.00 46.36 4.17
409 415 6.475504 CCTGGCATGACCACATATAAATAGA 58.524 40.000 0.00 0.00 46.36 1.98
470 477 2.607282 CGTCAGAGTTAGTTTGTCGGCT 60.607 50.000 0.00 0.00 0.00 5.52
476 483 1.069227 GTTAGTTTGTCGGCTGCCTTG 60.069 52.381 17.92 1.70 0.00 3.61
488 495 2.000429 CTGCCTTGCCTGTTTAATGC 58.000 50.000 0.00 0.00 0.00 3.56
489 496 0.607620 TGCCTTGCCTGTTTAATGCC 59.392 50.000 0.00 0.00 0.00 4.40
552 559 8.007742 AGATAGTTGTCCCATCTTGTATAGTCT 58.992 37.037 0.00 0.00 0.00 3.24
556 563 7.839705 AGTTGTCCCATCTTGTATAGTCTAGAA 59.160 37.037 0.00 0.00 0.00 2.10
566 573 7.495279 TCTTGTATAGTCTAGAAACGTCTCTCC 59.505 40.741 0.00 0.00 35.12 3.71
621 628 3.737172 GCGCCACTTCAATGCCGT 61.737 61.111 0.00 0.00 0.00 5.68
640 647 0.457853 TCTGTAGTGACCGATTGCGC 60.458 55.000 0.00 0.00 35.83 6.09
648 655 3.199190 CCGATTGCGCCCGCTTTA 61.199 61.111 14.13 0.10 42.51 1.85
701 708 4.117661 GTTCGCGCGGGAGAGAGT 62.118 66.667 31.69 0.00 0.00 3.24
708 715 2.765807 CGGGAGAGAGTGGGGCAT 60.766 66.667 0.00 0.00 0.00 4.40
732 739 3.588842 AGAGATGATTTTGAGTGGGACCA 59.411 43.478 0.00 0.00 0.00 4.02
734 741 3.588842 AGATGATTTTGAGTGGGACCAGA 59.411 43.478 0.00 0.00 0.00 3.86
736 743 2.087646 GATTTTGAGTGGGACCAGAGC 58.912 52.381 0.00 0.00 0.00 4.09
744 751 3.371063 GGACCAGAGCGTCGGACA 61.371 66.667 9.10 0.00 33.30 4.02
746 753 2.910479 ACCAGAGCGTCGGACACA 60.910 61.111 9.10 0.00 0.00 3.72
771 778 3.479269 CGACGGTGCCGAAAGCTC 61.479 66.667 18.16 2.98 44.23 4.09
772 779 2.048127 GACGGTGCCGAAAGCTCT 60.048 61.111 18.16 0.00 44.23 4.09
786 801 1.312815 AGCTCTCGCTTGTTTGCTTT 58.687 45.000 0.00 0.00 46.47 3.51
788 803 1.002468 GCTCTCGCTTGTTTGCTTTCA 60.002 47.619 0.00 0.00 0.00 2.69
802 817 2.102252 TGCTTTCAGTTTGCGGGATTTT 59.898 40.909 0.00 0.00 0.00 1.82
814 829 2.621526 GCGGGATTTTGGATAACCGAAT 59.378 45.455 4.97 0.00 43.69 3.34
819 834 5.453198 GGGATTTTGGATAACCGAATGCATT 60.453 40.000 12.83 12.83 39.10 3.56
878 893 1.680735 ACGTTTGCAGGCAATTTGAGA 59.319 42.857 7.62 0.00 35.70 3.27
1083 1126 3.009714 GTTTCTCCTCCCCGCCCT 61.010 66.667 0.00 0.00 0.00 5.19
1129 1172 2.230940 CGAATCCGCGTGCCACTAG 61.231 63.158 4.92 0.00 0.00 2.57
1131 1174 4.530857 ATCCGCGTGCCACTAGCC 62.531 66.667 4.92 0.00 42.71 3.93
1189 1232 2.987547 TCGCCGAACCTCGTCCTT 60.988 61.111 0.00 0.00 38.40 3.36
1267 1310 0.477597 TGGGGGAAGTGGAGGACATT 60.478 55.000 0.00 0.00 0.00 2.71
1279 1322 3.769844 TGGAGGACATTCTCAAGGACTAC 59.230 47.826 0.00 0.00 35.58 2.73
1283 1326 3.181485 GGACATTCTCAAGGACTACGAGG 60.181 52.174 0.00 0.00 0.00 4.63
1514 1559 1.842562 ACATCCACAGCTGGCTTCTAT 59.157 47.619 19.93 0.00 37.49 1.98
1520 1565 3.698040 CCACAGCTGGCTTCTATTTGATT 59.302 43.478 19.93 0.00 0.00 2.57
1523 1568 3.067742 CAGCTGGCTTCTATTTGATTGGG 59.932 47.826 5.57 0.00 0.00 4.12
1525 1570 2.363359 CTGGCTTCTATTTGATTGGGGC 59.637 50.000 0.00 0.00 0.00 5.80
1585 1630 2.075355 TTGGGTGCTGGGGAACGATT 62.075 55.000 0.00 0.00 0.00 3.34
1625 1671 5.863965 TGGATCTGTATGTGTCAACTTGAA 58.136 37.500 0.00 0.00 0.00 2.69
1639 1685 7.274904 GTGTCAACTTGAACTCGCTGTATTATA 59.725 37.037 0.00 0.00 0.00 0.98
1874 1926 7.578458 TGGTTTCTTTATAGTACTCCCCTTT 57.422 36.000 0.00 0.00 0.00 3.11
1890 1949 3.069016 CCCCTTTACGGCAAAGTTTTTCT 59.931 43.478 9.92 0.00 41.88 2.52
2130 2196 6.984474 GCAGTATAGATGCTTGGTTAACACTA 59.016 38.462 8.10 0.42 40.59 2.74
2166 2232 2.532250 AAAGGGCCATAGGGAAACTG 57.468 50.000 6.18 0.00 35.59 3.16
2456 2522 5.633830 TCATGAAAAGGAGACAAATCAGC 57.366 39.130 0.00 0.00 0.00 4.26
2494 2560 7.183580 AGAAGATCTGTCAAAAGAAGAAACG 57.816 36.000 0.00 0.00 0.00 3.60
3156 3222 5.111293 CAACATAATTGTGGATTTGCTCCC 58.889 41.667 7.15 0.00 44.23 4.30
3227 3293 9.827411 GTTCTACTGTTTGAAGTATTTGGAATC 57.173 33.333 0.00 0.00 32.32 2.52
3327 3393 8.454106 GGGTCATTGCATTAAGTATACATGATC 58.546 37.037 5.50 3.33 0.00 2.92
3390 3458 1.516864 CGCGTTGCTTGTTTTTCTTCC 59.483 47.619 0.00 0.00 0.00 3.46
4114 4184 5.800438 TCGAGTATTCACGTGAGATTCTTTG 59.200 40.000 19.11 13.21 0.00 2.77
4338 4409 4.143986 TGTATTGCGTATCATTCACCCA 57.856 40.909 0.00 0.00 0.00 4.51
4350 4421 7.545965 CGTATCATTCACCCATCCTATAACTTC 59.454 40.741 0.00 0.00 0.00 3.01
4382 4456 1.074752 CGCCAGAGTCTGAAGCTTTC 58.925 55.000 22.09 0.00 32.44 2.62
4401 4475 6.153510 AGCTTTCTTCCTTGTTCTTTCTGTTT 59.846 34.615 0.00 0.00 0.00 2.83
4706 4780 2.226330 CAAAACTGGTCCGTCAATCCA 58.774 47.619 0.00 0.00 0.00 3.41
4722 4796 5.236478 GTCAATCCAGGGTGTTATTGTATCG 59.764 44.000 0.00 0.00 32.43 2.92
4748 4822 5.585445 CAGATTGATGGGAACTCTTGAGAAG 59.415 44.000 4.49 0.00 0.00 2.85
4919 4993 4.831107 TCCCATTTTGCTTGATAAAAGCC 58.169 39.130 7.55 0.00 42.36 4.35
5026 5101 6.128035 TGTTGTGTGCATATTTGTGGATAGAC 60.128 38.462 0.00 0.00 0.00 2.59
5238 5313 0.981183 TCACTGTAATCCGCTTGGGT 59.019 50.000 0.00 0.00 37.00 4.51
5510 5585 6.428083 TTGTTCAGATTACAGTGTCCCTTA 57.572 37.500 0.00 0.00 0.00 2.69
5564 5640 8.870160 TTTACTCCTCATTTTGTGTTTTCATG 57.130 30.769 0.00 0.00 0.00 3.07
5709 5785 5.599732 ACTAGCAAGCATATCTCTCTGTTG 58.400 41.667 0.00 0.00 0.00 3.33
5939 6022 7.915293 TCACTAGTTGTTTCTTTCTTGTGAA 57.085 32.000 0.00 0.00 38.73 3.18
6038 6121 2.684374 TGTATGATGTGCCAGTTGATGC 59.316 45.455 0.00 0.00 0.00 3.91
6104 6187 3.059570 GTGTATCTCGCAACTCTTTGACG 59.940 47.826 0.00 0.00 34.24 4.35
6176 6259 3.649277 CTCCGCCGGTGACCTCTTG 62.649 68.421 18.79 0.00 0.00 3.02
6202 6285 1.688811 GTGGTGAGGGGTATTGCCA 59.311 57.895 0.00 0.00 39.65 4.92
6209 6292 0.328450 AGGGGTATTGCCAGATCCCA 60.328 55.000 3.19 0.00 39.85 4.37
6228 6311 2.988343 CACGCGTGTGGATTGTTTTAA 58.012 42.857 30.50 0.00 42.59 1.52
6234 6317 5.338559 CGCGTGTGGATTGTTTTAACTTTAG 59.661 40.000 0.00 0.00 0.00 1.85
6239 6322 7.650504 GTGTGGATTGTTTTAACTTTAGGTTCC 59.349 37.037 0.00 0.00 39.17 3.62
6268 6351 5.280830 CCCCTAGTAGCTTAGGTTTTTGGAA 60.281 44.000 10.05 0.00 38.86 3.53
6287 6370 6.385581 TTGGAACATTCGACCTCTTGGTTTT 61.386 40.000 0.00 0.00 43.35 2.43
6318 6476 5.049198 GGCGATGATGATGCTGAATAAAGAA 60.049 40.000 0.00 0.00 0.00 2.52
6322 6480 7.520131 CGATGATGATGCTGAATAAAGAAGCTT 60.520 37.037 0.00 0.00 37.82 3.74
6324 6482 8.510243 TGATGATGCTGAATAAAGAAGCTTTA 57.490 30.769 0.00 2.49 37.82 1.85
6346 6504 1.254026 TTCTTCTCCTTCGAGGCGAA 58.746 50.000 2.13 2.13 43.75 4.70
6347 6505 0.526662 TCTTCTCCTTCGAGGCGAAC 59.473 55.000 0.00 0.00 41.05 3.95
6352 6510 0.674581 TCCTTCGAGGCGAACGTCTA 60.675 55.000 0.32 0.00 41.05 2.59
6356 6514 3.488047 CCTTCGAGGCGAACGTCTATTTA 60.488 47.826 0.32 0.00 41.05 1.40
6367 6525 5.107989 CGAACGTCTATTTATTCGGTGATGG 60.108 44.000 0.00 0.00 40.11 3.51
6368 6526 5.524971 ACGTCTATTTATTCGGTGATGGA 57.475 39.130 0.00 0.00 0.00 3.41
6371 6529 5.402568 CGTCTATTTATTCGGTGATGGAGTG 59.597 44.000 0.00 0.00 0.00 3.51
6372 6530 5.696724 GTCTATTTATTCGGTGATGGAGTGG 59.303 44.000 0.00 0.00 0.00 4.00
6377 6535 0.323629 TCGGTGATGGAGTGGGAAAC 59.676 55.000 0.00 0.00 0.00 2.78
6378 6536 0.324943 CGGTGATGGAGTGGGAAACT 59.675 55.000 0.00 0.00 43.85 2.66
6379 6537 1.826385 GGTGATGGAGTGGGAAACTG 58.174 55.000 0.00 0.00 40.07 3.16
6381 6539 1.073923 GTGATGGAGTGGGAAACTGGT 59.926 52.381 0.00 0.00 40.07 4.00
6382 6540 1.351017 TGATGGAGTGGGAAACTGGTC 59.649 52.381 0.00 0.00 40.07 4.02
6395 6553 1.071471 CTGGTCTGTTCAAGCGGGT 59.929 57.895 0.00 0.00 0.00 5.28
6411 6569 2.112815 GGTATCTTGTGGCGGTGGC 61.113 63.158 0.00 0.00 38.90 5.01
6429 6587 1.298859 GCGTCATCCTTGTGGTGGAC 61.299 60.000 0.00 0.00 36.30 4.02
6446 6604 0.737715 GACATGTGTCCTCACGCTCC 60.738 60.000 1.15 0.00 46.49 4.70
6454 6612 2.029073 CTCACGCTCCACCGTTGT 59.971 61.111 0.00 0.00 39.83 3.32
6473 6631 2.050351 ACGACGTCTGCTCCAACG 60.050 61.111 14.70 0.00 44.22 4.10
6499 6712 1.135489 GTGGAGCATCGACGACAACTA 60.135 52.381 0.00 0.00 33.18 2.24
6500 6713 1.132453 TGGAGCATCGACGACAACTAG 59.868 52.381 0.00 0.00 34.37 2.57
6506 6719 3.669824 GCATCGACGACAACTAGAAGACA 60.670 47.826 0.00 0.00 0.00 3.41
6507 6720 3.808116 TCGACGACAACTAGAAGACAG 57.192 47.619 0.00 0.00 0.00 3.51
6511 6724 4.228317 GACGACAACTAGAAGACAGAACC 58.772 47.826 0.00 0.00 0.00 3.62
6512 6725 3.635373 ACGACAACTAGAAGACAGAACCA 59.365 43.478 0.00 0.00 0.00 3.67
6518 6758 5.923733 ACTAGAAGACAGAACCAGGTATG 57.076 43.478 0.00 0.00 0.00 2.39
6563 6803 4.579127 GCGGGGTGCCAAATCTAT 57.421 55.556 0.00 0.00 37.76 1.98
6568 6808 3.139077 CGGGGTGCCAAATCTATAGTTC 58.861 50.000 0.00 0.00 0.00 3.01
6591 6831 4.920112 CGTGTCCGGGGTGTTGCA 62.920 66.667 0.00 0.00 0.00 4.08
6592 6832 3.284449 GTGTCCGGGGTGTTGCAC 61.284 66.667 0.00 0.00 0.00 4.57
6603 6843 2.890945 GGGTGTTGCACTGGTCTAATTT 59.109 45.455 0.00 0.00 34.40 1.82
6611 6851 4.219033 GCACTGGTCTAATTTGTTCAACG 58.781 43.478 0.00 0.00 0.00 4.10
6622 6862 4.902443 TTTGTTCAACGACAATGGCTTA 57.098 36.364 0.00 0.00 39.12 3.09
6631 6871 5.208463 ACGACAATGGCTTAATTTTTGGT 57.792 34.783 0.00 0.00 0.00 3.67
6639 6879 3.006859 GGCTTAATTTTTGGTGAGCCACT 59.993 43.478 7.27 0.00 46.76 4.00
6648 6888 1.239347 GGTGAGCCACTTTGAAGGTC 58.761 55.000 5.48 0.00 34.40 3.85
6657 6897 0.954452 CTTTGAAGGTCCGCAAAGCT 59.046 50.000 20.22 0.00 42.85 3.74
6681 6921 2.244117 ATCAGTGATGGAGCCGCGTT 62.244 55.000 4.39 0.00 0.00 4.84
6695 6935 1.803519 GCGTTGAGCTCGAGTGAGG 60.804 63.158 15.13 4.80 42.79 3.86
6703 6943 1.939769 GCTCGAGTGAGGAGGTGGTC 61.940 65.000 15.13 0.00 42.79 4.02
6717 6957 4.261614 GGAGGTGGTCTGTCATTTGTTTTC 60.262 45.833 0.00 0.00 0.00 2.29
6725 6965 5.455525 GTCTGTCATTTGTTTTCTTTCGGTG 59.544 40.000 0.00 0.00 0.00 4.94
6732 6972 0.667993 TTTTCTTTCGGTGGCTGCTG 59.332 50.000 0.00 0.00 0.00 4.41
6747 6987 2.033141 CTGTGGTGGTGCCTGAGG 59.967 66.667 0.00 0.00 38.35 3.86
6763 7003 3.134127 GGCAGGTGATGGGCGTTC 61.134 66.667 0.00 0.00 0.00 3.95
6775 7015 1.155424 GGGCGTTCGTGTCAAACTCA 61.155 55.000 0.00 0.00 0.00 3.41
6778 7018 2.363220 GCGTTCGTGTCAAACTCAAAG 58.637 47.619 0.00 0.00 0.00 2.77
6787 7027 3.063452 TGTCAAACTCAAAGACGTTCTGC 59.937 43.478 0.00 0.00 35.09 4.26
6803 7043 6.027749 ACGTTCTGCTGTCTTTTTAGTTTTG 58.972 36.000 0.00 0.00 0.00 2.44
6804 7044 6.027749 CGTTCTGCTGTCTTTTTAGTTTTGT 58.972 36.000 0.00 0.00 0.00 2.83
6805 7045 6.194692 CGTTCTGCTGTCTTTTTAGTTTTGTC 59.805 38.462 0.00 0.00 0.00 3.18
6806 7046 6.751514 TCTGCTGTCTTTTTAGTTTTGTCA 57.248 33.333 0.00 0.00 0.00 3.58
6807 7047 7.333528 TCTGCTGTCTTTTTAGTTTTGTCAT 57.666 32.000 0.00 0.00 0.00 3.06
6808 7048 7.195646 TCTGCTGTCTTTTTAGTTTTGTCATG 58.804 34.615 0.00 0.00 0.00 3.07
6809 7049 6.862209 TGCTGTCTTTTTAGTTTTGTCATGT 58.138 32.000 0.00 0.00 0.00 3.21
6810 7050 6.972328 TGCTGTCTTTTTAGTTTTGTCATGTC 59.028 34.615 0.00 0.00 0.00 3.06
6819 7059 7.972832 TTAGTTTTGTCATGTCGGTCTTTAT 57.027 32.000 0.00 0.00 0.00 1.40
6820 7060 6.241207 AGTTTTGTCATGTCGGTCTTTATG 57.759 37.500 0.00 0.00 0.00 1.90
6824 7064 6.715344 TTGTCATGTCGGTCTTTATGTAAC 57.285 37.500 0.00 0.00 0.00 2.50
6828 7068 6.367969 GTCATGTCGGTCTTTATGTAACTTGT 59.632 38.462 0.00 0.00 0.00 3.16
6830 7070 7.543172 TCATGTCGGTCTTTATGTAACTTGTAC 59.457 37.037 0.00 0.00 0.00 2.90
6912 7155 4.503370 GCTATACAAACGAAGGCTGTACTC 59.497 45.833 0.00 0.00 32.87 2.59
6917 7162 2.656560 ACGAAGGCTGTACTCATGTC 57.343 50.000 0.00 0.00 0.00 3.06
6922 7167 4.434520 GAAGGCTGTACTCATGTCTAACC 58.565 47.826 0.00 0.00 0.00 2.85
6936 7181 1.616865 TCTAACCCAACAGGACTCACG 59.383 52.381 0.00 0.00 39.89 4.35
6959 7204 2.340210 TGTTGGCTGCTTAGTTGTGA 57.660 45.000 0.00 0.00 0.00 3.58
6976 7221 1.865340 GTGAGACCGTCCTTTGTTGTC 59.135 52.381 0.00 0.00 0.00 3.18
6978 7223 1.070289 GAGACCGTCCTTTGTTGTCCT 59.930 52.381 0.00 0.00 0.00 3.85
6991 7236 1.334869 GTTGTCCTGCAAAGGTCACAG 59.665 52.381 0.00 0.00 39.03 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.320421 GAGCAGCGGTACAACCTCAA 60.320 55.000 0.00 0.00 35.66 3.02
153 155 0.034089 CCCCAATGGAGGAGGTGTTC 60.034 60.000 0.00 0.00 35.39 3.18
154 156 1.509548 CCCCCAATGGAGGAGGTGTT 61.510 60.000 0.00 0.00 35.39 3.32
175 177 1.062810 AGGTGAGAGATGACTACCCCC 60.063 57.143 0.00 0.00 31.80 5.40
321 327 2.124983 CCACCTCTGCCATGACCG 60.125 66.667 0.00 0.00 0.00 4.79
341 347 3.938963 GCTGTTTCATTTCCTCATCCGTA 59.061 43.478 0.00 0.00 0.00 4.02
363 369 2.794910 CACGATCTAAATAGCACCACGG 59.205 50.000 0.00 0.00 0.00 4.94
364 370 2.218759 GCACGATCTAAATAGCACCACG 59.781 50.000 0.00 0.00 0.00 4.94
375 381 0.829990 TCATGCCAGGCACGATCTAA 59.170 50.000 19.10 0.00 43.04 2.10
376 382 0.104855 GTCATGCCAGGCACGATCTA 59.895 55.000 19.10 0.00 43.04 1.98
399 405 4.081420 CCTGGCCAGCGTCTCTATTTATAT 60.081 45.833 28.39 0.00 0.00 0.86
470 477 0.607620 GGCATTAAACAGGCAAGGCA 59.392 50.000 0.00 0.00 33.31 4.75
476 483 1.130561 GTCTGTCGGCATTAAACAGGC 59.869 52.381 0.00 0.00 40.60 4.85
488 495 2.176055 CCGTCGTCTGTCTGTCGG 59.824 66.667 0.00 0.00 0.00 4.79
489 496 2.176055 CCCGTCGTCTGTCTGTCG 59.824 66.667 0.00 0.00 0.00 4.35
566 573 1.320555 CTCCTCGCATGTTAAACGTCG 59.679 52.381 0.00 0.00 0.00 5.12
570 577 2.540101 CCGATCTCCTCGCATGTTAAAC 59.460 50.000 0.00 0.00 46.25 2.01
621 628 0.457853 GCGCAATCGGTCACTACAGA 60.458 55.000 0.30 0.00 34.21 3.41
640 647 2.890808 TCATGCTAGTCTAAAGCGGG 57.109 50.000 0.00 0.00 43.11 6.13
699 706 1.817087 ATCATCTCTCATGCCCCACT 58.183 50.000 0.00 0.00 0.00 4.00
701 708 3.053470 TCAAAATCATCTCTCATGCCCCA 60.053 43.478 0.00 0.00 0.00 4.96
708 715 4.323792 GGTCCCACTCAAAATCATCTCTCA 60.324 45.833 0.00 0.00 0.00 3.27
732 739 2.335369 GTGTGTGTCCGACGCTCT 59.665 61.111 13.10 0.00 35.94 4.09
734 741 3.896133 ACGTGTGTGTCCGACGCT 61.896 61.111 13.10 0.00 36.56 5.07
736 743 3.028019 CCACGTGTGTGTCCGACG 61.028 66.667 15.65 0.00 44.92 5.12
769 776 2.289002 ACTGAAAGCAAACAAGCGAGAG 59.711 45.455 0.00 0.00 37.60 3.20
771 778 2.763249 ACTGAAAGCAAACAAGCGAG 57.237 45.000 0.00 0.00 37.60 5.03
772 779 3.178267 CAAACTGAAAGCAAACAAGCGA 58.822 40.909 0.00 0.00 37.60 4.93
786 801 1.988293 TCCAAAATCCCGCAAACTGA 58.012 45.000 0.00 0.00 0.00 3.41
788 803 3.194755 GGTTATCCAAAATCCCGCAAACT 59.805 43.478 0.00 0.00 0.00 2.66
832 847 4.142403 ACTTTGCCATTCAATATGGTGTCG 60.142 41.667 5.75 0.00 41.17 4.35
952 973 5.183228 TGTGAGGGTTCTTTCGGAAATATC 58.817 41.667 3.24 0.00 35.51 1.63
953 974 5.174037 TGTGAGGGTTCTTTCGGAAATAT 57.826 39.130 3.24 0.00 35.51 1.28
955 976 3.412386 CTGTGAGGGTTCTTTCGGAAAT 58.588 45.455 3.24 0.00 35.51 2.17
1083 1126 1.130561 CGACGAGATGTGTGAGCAGTA 59.869 52.381 0.00 0.00 0.00 2.74
1267 1310 2.873094 TGACCTCGTAGTCCTTGAGA 57.127 50.000 5.37 0.00 35.83 3.27
1279 1322 0.737715 CGCCTTCCTTCTTGACCTCG 60.738 60.000 0.00 0.00 0.00 4.63
1283 1326 1.021920 GCCTCGCCTTCCTTCTTGAC 61.022 60.000 0.00 0.00 0.00 3.18
1393 1438 6.429385 GTGCAGATTTAATCCCTAATCCAGAG 59.571 42.308 0.78 0.00 32.43 3.35
1514 1559 0.037590 ACTGCTACGCCCCAATCAAA 59.962 50.000 0.00 0.00 0.00 2.69
1520 1565 0.978151 TCTAAAACTGCTACGCCCCA 59.022 50.000 0.00 0.00 0.00 4.96
1523 1568 2.011540 AGCTCTAAAACTGCTACGCC 57.988 50.000 0.00 0.00 35.05 5.68
1525 1570 4.686554 ACTCAAAGCTCTAAAACTGCTACG 59.313 41.667 0.00 0.00 35.85 3.51
1585 1630 8.806429 ACAGATCCAAACACAATCACATATTA 57.194 30.769 0.00 0.00 0.00 0.98
1625 1671 5.546621 ACCACCATTATAATACAGCGAGT 57.453 39.130 0.00 0.00 0.00 4.18
1639 1685 1.355720 AGCTAGGCAGAAACCACCATT 59.644 47.619 0.00 0.00 0.00 3.16
1697 1749 2.263895 ACAGTATAAGGTGGAGGGCA 57.736 50.000 0.00 0.00 0.00 5.36
1863 1915 2.353323 CTTTGCCGTAAAGGGGAGTAC 58.647 52.381 1.24 0.00 41.68 2.73
1890 1949 9.620259 AATGCAACTTGAAACCCTTTAATTTTA 57.380 25.926 0.00 0.00 0.00 1.52
2070 2132 4.021192 CCTACCAGCAACAAATTGTCCAAT 60.021 41.667 0.00 0.00 38.17 3.16
2072 2134 2.890311 CCTACCAGCAACAAATTGTCCA 59.110 45.455 0.00 0.00 38.17 4.02
2156 2222 4.584638 ACAATGGTATGCAGTTTCCCTA 57.415 40.909 0.00 0.00 0.00 3.53
2166 2232 6.769134 AACCCTAAGTTTACAATGGTATGC 57.231 37.500 0.00 0.00 33.89 3.14
2456 2522 9.605275 TGACAGATCTTCTATTTCATTTGTAGG 57.395 33.333 0.00 0.00 0.00 3.18
3108 3174 5.174395 CCAAGATTCTACCAGAGTTGTCAG 58.826 45.833 0.00 0.00 0.00 3.51
3227 3293 7.609760 TCACATAAAGCCTTACAACATACAG 57.390 36.000 0.00 0.00 0.00 2.74
3373 3441 3.819564 AGGGGAAGAAAAACAAGCAAC 57.180 42.857 0.00 0.00 0.00 4.17
3390 3458 5.010282 ACATAAACCAGCAAGAAAGTAGGG 58.990 41.667 0.00 0.00 0.00 3.53
3842 3910 8.898761 TGTGAATTGTTTGACTGTACAAGTAAT 58.101 29.630 0.00 0.00 40.07 1.89
4114 4184 6.651225 AGAGTATTTGCACAGAAAGAAGGTAC 59.349 38.462 0.00 0.00 0.00 3.34
4338 4409 7.290813 GTGGAATTTGAGGGAAGTTATAGGAT 58.709 38.462 0.00 0.00 0.00 3.24
4350 4421 0.322456 TCTGGCGTGGAATTTGAGGG 60.322 55.000 0.00 0.00 0.00 4.30
4382 4456 5.358160 AGTCCAAACAGAAAGAACAAGGAAG 59.642 40.000 0.00 0.00 0.00 3.46
4401 4475 6.540189 GCTTCAAGCTATTATTCTTCAGTCCA 59.460 38.462 0.71 0.00 38.45 4.02
4706 4780 2.769663 TCTGGCGATACAATAACACCCT 59.230 45.455 0.00 0.00 0.00 4.34
4722 4796 2.686915 CAAGAGTTCCCATCAATCTGGC 59.313 50.000 0.00 0.00 34.77 4.85
4816 4890 6.015940 ACAGCAAAATTCTTCCTTGGTTCTAG 60.016 38.462 0.00 0.00 0.00 2.43
4919 4993 3.119849 CCAAGGACCATTTACAAGCTTCG 60.120 47.826 0.00 0.00 0.00 3.79
5067 5142 6.587226 TGCATAACAAGAGAAAACATGAATGC 59.413 34.615 0.00 0.00 36.82 3.56
5238 5313 0.329261 CAGGGGGCATCAGACTTCAA 59.671 55.000 0.00 0.00 0.00 2.69
5550 5625 8.674263 AATTTGCCTATCATGAAAACACAAAA 57.326 26.923 0.00 0.00 0.00 2.44
5564 5640 6.287525 ACTGCTCTAGAGAAATTTGCCTATC 58.712 40.000 24.24 1.24 0.00 2.08
5670 5746 2.546162 GCTAGTAATTCTCCGACCTGCC 60.546 54.545 0.00 0.00 0.00 4.85
5709 5785 3.397613 ATTGAGAGCCTCTGCGCCC 62.398 63.158 4.18 0.00 44.33 6.13
5939 6022 8.358148 CGTAGGTAATATCAATAGTCTGTTGGT 58.642 37.037 9.22 5.01 0.00 3.67
6011 6094 5.104982 TCAACTGGCACATCATACATGTAGA 60.105 40.000 11.91 9.21 38.20 2.59
6038 6121 2.417933 GCACCTGTCACAGCTAAATCAG 59.582 50.000 0.00 0.00 0.00 2.90
6104 6187 4.228567 GGCTAGGGCTGGTCGCTC 62.229 72.222 0.00 0.00 40.36 5.03
6176 6259 4.065281 CCCTCACCACCGACGACC 62.065 72.222 0.00 0.00 0.00 4.79
6209 6292 2.614983 AGTTAAAACAATCCACACGCGT 59.385 40.909 5.58 5.58 0.00 6.01
6228 6311 1.082365 AGGGGCCTAGGAACCTAAAGT 59.918 52.381 19.87 0.00 0.00 2.66
6289 6372 4.081030 CATCATCATCGCCGCCGC 62.081 66.667 0.00 0.00 0.00 6.53
6318 6476 5.163457 CCTCGAAGGAGAAGAATCTAAAGCT 60.163 44.000 0.00 0.00 43.27 3.74
6322 6480 3.066900 CGCCTCGAAGGAGAAGAATCTAA 59.933 47.826 5.24 0.00 43.27 2.10
6324 6482 1.407258 CGCCTCGAAGGAGAAGAATCT 59.593 52.381 5.24 0.00 43.27 2.40
6335 6493 2.190325 AATAGACGTTCGCCTCGAAG 57.810 50.000 1.59 0.47 46.54 3.79
6336 6494 2.642139 AAATAGACGTTCGCCTCGAA 57.358 45.000 0.00 0.00 43.75 3.71
6337 6495 3.976793 ATAAATAGACGTTCGCCTCGA 57.023 42.857 0.00 0.00 0.00 4.04
6338 6496 3.117507 CGAATAAATAGACGTTCGCCTCG 59.882 47.826 0.00 0.00 37.29 4.63
6346 6504 5.068723 ACTCCATCACCGAATAAATAGACGT 59.931 40.000 0.00 0.00 0.00 4.34
6347 6505 5.402568 CACTCCATCACCGAATAAATAGACG 59.597 44.000 0.00 0.00 0.00 4.18
6352 6510 3.458118 TCCCACTCCATCACCGAATAAAT 59.542 43.478 0.00 0.00 0.00 1.40
6356 6514 1.285280 TTCCCACTCCATCACCGAAT 58.715 50.000 0.00 0.00 0.00 3.34
6367 6525 2.158813 TGAACAGACCAGTTTCCCACTC 60.159 50.000 0.00 0.00 30.92 3.51
6368 6526 1.843851 TGAACAGACCAGTTTCCCACT 59.156 47.619 0.00 0.00 35.35 4.00
6371 6529 1.609072 GCTTGAACAGACCAGTTTCCC 59.391 52.381 0.00 0.00 0.00 3.97
6372 6530 1.264288 CGCTTGAACAGACCAGTTTCC 59.736 52.381 0.00 0.00 0.00 3.13
6377 6535 0.320374 TACCCGCTTGAACAGACCAG 59.680 55.000 0.00 0.00 0.00 4.00
6378 6536 0.981183 ATACCCGCTTGAACAGACCA 59.019 50.000 0.00 0.00 0.00 4.02
6379 6537 1.207329 AGATACCCGCTTGAACAGACC 59.793 52.381 0.00 0.00 0.00 3.85
6381 6539 2.301870 ACAAGATACCCGCTTGAACAGA 59.698 45.455 10.00 0.00 44.16 3.41
6382 6540 2.416547 CACAAGATACCCGCTTGAACAG 59.583 50.000 10.00 0.00 44.16 3.16
6395 6553 2.125310 CGCCACCGCCACAAGATA 60.125 61.111 0.00 0.00 0.00 1.98
6411 6569 0.034756 TGTCCACCACAAGGATGACG 59.965 55.000 0.00 0.00 39.88 4.35
6429 6587 1.016130 GTGGAGCGTGAGGACACATG 61.016 60.000 0.00 0.00 46.20 3.21
6437 6595 2.029073 ACAACGGTGGAGCGTGAG 59.971 61.111 4.97 3.85 0.00 3.51
6440 6598 2.279918 GTCACAACGGTGGAGCGT 60.280 61.111 4.97 0.00 45.32 5.07
6441 6599 3.403057 CGTCACAACGGTGGAGCG 61.403 66.667 4.97 1.44 45.21 5.03
6454 6612 1.007734 GTTGGAGCAGACGTCGTCA 60.008 57.895 26.17 3.06 34.60 4.35
6473 6631 4.492160 TCGATGCTCCACGCCGAC 62.492 66.667 0.00 0.00 38.05 4.79
6480 6638 1.132453 CTAGTTGTCGTCGATGCTCCA 59.868 52.381 0.00 0.00 0.00 3.86
6481 6639 1.400846 TCTAGTTGTCGTCGATGCTCC 59.599 52.381 0.00 0.00 0.00 4.70
6482 6640 2.826979 TCTAGTTGTCGTCGATGCTC 57.173 50.000 0.00 0.00 0.00 4.26
6483 6641 2.747989 TCTTCTAGTTGTCGTCGATGCT 59.252 45.455 0.00 0.00 0.00 3.79
6488 6701 3.808116 TCTGTCTTCTAGTTGTCGTCG 57.192 47.619 0.00 0.00 0.00 5.12
6511 6724 2.906354 CGAAGGAGGAAACCATACCTG 58.094 52.381 0.00 0.00 36.57 4.00
6529 6769 2.872557 CCACGACTAAGACGCCGA 59.127 61.111 0.00 0.00 0.00 5.54
6563 6803 1.138036 CGGACACGCCATCGAACTA 59.862 57.895 0.00 0.00 39.41 2.24
6590 6830 5.007234 TGTCGTTGAACAAATTAGACCAGTG 59.993 40.000 0.00 0.00 0.00 3.66
6591 6831 5.120399 TGTCGTTGAACAAATTAGACCAGT 58.880 37.500 0.00 0.00 0.00 4.00
6592 6832 5.666969 TGTCGTTGAACAAATTAGACCAG 57.333 39.130 0.00 0.00 0.00 4.00
6603 6843 5.446143 AATTAAGCCATTGTCGTTGAACA 57.554 34.783 0.00 0.00 0.00 3.18
6611 6851 5.120674 GCTCACCAAAAATTAAGCCATTGTC 59.879 40.000 0.00 0.00 0.00 3.18
6631 6871 0.250295 CGGACCTTCAAAGTGGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
6639 6879 0.667993 CAGCTTTGCGGACCTTCAAA 59.332 50.000 8.06 8.06 0.00 2.69
6648 6888 3.911989 CTGATAAGCAGCTTTGCGG 57.088 52.632 14.29 7.15 37.90 5.69
6657 6897 1.202568 CGGCTCCATCACTGATAAGCA 60.203 52.381 19.71 0.00 34.07 3.91
6681 6921 0.962855 CACCTCCTCACTCGAGCTCA 60.963 60.000 13.61 0.00 38.00 4.26
6695 6935 4.580580 AGAAAACAAATGACAGACCACCTC 59.419 41.667 0.00 0.00 0.00 3.85
6703 6943 4.739716 CCACCGAAAGAAAACAAATGACAG 59.260 41.667 0.00 0.00 0.00 3.51
6717 6957 2.620112 CCACAGCAGCCACCGAAAG 61.620 63.158 0.00 0.00 0.00 2.62
6747 6987 3.499737 CGAACGCCCATCACCTGC 61.500 66.667 0.00 0.00 0.00 4.85
6755 6995 1.153329 AGTTTGACACGAACGCCCA 60.153 52.632 0.00 0.00 32.38 5.36
6763 7003 3.306166 AGAACGTCTTTGAGTTTGACACG 59.694 43.478 0.00 0.00 0.00 4.49
6778 7018 5.405331 AACTAAAAAGACAGCAGAACGTC 57.595 39.130 0.00 0.00 0.00 4.34
6787 7027 6.632834 CCGACATGACAAAACTAAAAAGACAG 59.367 38.462 0.00 0.00 0.00 3.51
6794 7034 6.687081 AAAGACCGACATGACAAAACTAAA 57.313 33.333 0.00 0.00 0.00 1.85
6796 7036 6.932400 ACATAAAGACCGACATGACAAAACTA 59.068 34.615 0.00 0.00 0.00 2.24
6803 7043 6.367969 ACAAGTTACATAAAGACCGACATGAC 59.632 38.462 0.00 0.00 0.00 3.06
6804 7044 6.460781 ACAAGTTACATAAAGACCGACATGA 58.539 36.000 0.00 0.00 0.00 3.07
6805 7045 6.721571 ACAAGTTACATAAAGACCGACATG 57.278 37.500 0.00 0.00 0.00 3.21
6806 7046 7.609056 AGTACAAGTTACATAAAGACCGACAT 58.391 34.615 0.00 0.00 0.00 3.06
6807 7047 6.985117 AGTACAAGTTACATAAAGACCGACA 58.015 36.000 0.00 0.00 0.00 4.35
6808 7048 7.880059 AAGTACAAGTTACATAAAGACCGAC 57.120 36.000 0.00 0.00 0.00 4.79
6809 7049 8.143193 TCAAAGTACAAGTTACATAAAGACCGA 58.857 33.333 0.00 0.00 0.00 4.69
6810 7050 8.301730 TCAAAGTACAAGTTACATAAAGACCG 57.698 34.615 0.00 0.00 0.00 4.79
6878 7118 5.304778 TCGTTTGTATAGCACATGCCATAT 58.695 37.500 0.00 0.00 43.38 1.78
6880 7120 3.540617 TCGTTTGTATAGCACATGCCAT 58.459 40.909 0.00 0.00 43.38 4.40
6912 7155 3.007940 TGAGTCCTGTTGGGTTAGACATG 59.992 47.826 0.00 0.00 36.25 3.21
6917 7162 1.343465 ACGTGAGTCCTGTTGGGTTAG 59.657 52.381 0.00 0.00 44.19 2.34
6936 7181 4.215399 TCACAACTAAGCAGCCAACATAAC 59.785 41.667 0.00 0.00 0.00 1.89
6959 7204 1.129058 AGGACAACAAAGGACGGTCT 58.871 50.000 8.23 0.00 0.00 3.85
6978 7223 0.535780 CAGCTCCTGTGACCTTTGCA 60.536 55.000 0.00 0.00 0.00 4.08
6991 7236 2.216898 GCAATGTGTCTATCCAGCTCC 58.783 52.381 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.