Multiple sequence alignment - TraesCS4D01G208700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G208700 chr4D 100.000 7564 0 0 1 7564 359639363 359631800 0.000000e+00 13969.0
1 TraesCS4D01G208700 chr4D 92.754 138 10 0 3051 3188 359636178 359636041 4.630000e-47 200.0
2 TraesCS4D01G208700 chr4D 92.754 138 10 0 3186 3323 359636313 359636176 4.630000e-47 200.0
3 TraesCS4D01G208700 chr4D 84.746 177 25 2 3013 3188 74075807 74075982 7.800000e-40 176.0
4 TraesCS4D01G208700 chr4D 98.684 76 1 0 7004 7079 359632322 359632247 1.320000e-27 135.0
5 TraesCS4D01G208700 chr4D 98.684 76 1 0 7042 7117 359632360 359632285 1.320000e-27 135.0
6 TraesCS4D01G208700 chr4D 90.476 84 8 0 1 84 75515090 75515007 2.230000e-20 111.0
7 TraesCS4D01G208700 chr4D 96.923 65 2 0 3131 3195 104736781 104736717 8.020000e-20 110.0
8 TraesCS4D01G208700 chr4D 85.437 103 10 2 3098 3196 204579659 204579558 1.340000e-17 102.0
9 TraesCS4D01G208700 chr4D 96.721 61 2 0 3136 3196 390309178 390309118 1.340000e-17 102.0
10 TraesCS4D01G208700 chr4B 93.995 4163 153 31 2969 7041 444111784 444107629 0.000000e+00 6213.0
11 TraesCS4D01G208700 chr4B 92.303 1663 85 26 99 1733 444114970 444113323 0.000000e+00 2322.0
12 TraesCS4D01G208700 chr4B 91.794 1572 63 17 1757 3282 444113327 444111776 0.000000e+00 2128.0
13 TraesCS4D01G208700 chr4B 93.353 346 17 3 7223 7564 444107035 444106692 2.440000e-139 507.0
14 TraesCS4D01G208700 chr4B 93.789 161 7 1 7082 7239 444107664 444107504 9.810000e-59 239.0
15 TraesCS4D01G208700 chr4B 91.304 138 12 0 3186 3323 444112008 444111871 1.000000e-43 189.0
16 TraesCS4D01G208700 chr4B 90.580 138 13 0 3186 3323 444111694 444111557 4.660000e-42 183.0
17 TraesCS4D01G208700 chr4A 92.705 4003 216 27 601 4551 105242942 105246920 0.000000e+00 5705.0
18 TraesCS4D01G208700 chr4A 93.415 2035 84 27 5025 7041 105247520 105249522 0.000000e+00 2970.0
19 TraesCS4D01G208700 chr4A 97.172 389 8 1 4608 4993 105247030 105247418 0.000000e+00 654.0
20 TraesCS4D01G208700 chr4A 86.139 505 46 13 7082 7564 105249487 105249989 2.420000e-144 523.0
21 TraesCS4D01G208700 chr4A 87.027 185 24 0 3014 3198 678200972 678200788 7.690000e-50 209.0
22 TraesCS4D01G208700 chr4A 80.000 275 46 5 3196 3468 651367622 651367889 2.150000e-45 195.0
23 TraesCS4D01G208700 chr4A 98.276 58 1 0 1495 1552 469243060 469243003 1.340000e-17 102.0
24 TraesCS4D01G208700 chr6A 87.960 598 58 11 5025 5621 428282021 428282605 0.000000e+00 693.0
25 TraesCS4D01G208700 chr6A 86.482 577 35 12 4447 4993 428281356 428281919 1.820000e-165 593.0
26 TraesCS4D01G208700 chr6A 86.744 430 48 7 2997 3423 532025047 532024624 3.200000e-128 470.0
27 TraesCS4D01G208700 chr6B 87.895 570 39 13 4447 4993 457400490 457399928 1.780000e-180 643.0
28 TraesCS4D01G208700 chr6B 88.760 258 25 4 3186 3440 648090470 648090214 5.700000e-81 313.0
29 TraesCS4D01G208700 chr6B 87.083 240 24 3 5166 5401 457399686 457399450 1.620000e-66 265.0
30 TraesCS4D01G208700 chr6B 89.831 177 14 4 3012 3188 648090506 648090334 2.750000e-54 224.0
31 TraesCS4D01G208700 chr6B 92.593 108 7 1 4142 4249 457400613 457400507 3.660000e-33 154.0
32 TraesCS4D01G208700 chr6B 88.571 105 6 4 5025 5128 457399784 457399685 1.030000e-23 122.0
33 TraesCS4D01G208700 chr6D 90.625 384 29 4 5273 5655 292818532 292818155 3.150000e-138 503.0
34 TraesCS4D01G208700 chr6D 87.651 413 45 5 3012 3423 386929706 386929299 6.870000e-130 475.0
35 TraesCS4D01G208700 chr6D 89.147 258 25 2 3186 3441 429842491 429842235 1.220000e-82 318.0
36 TraesCS4D01G208700 chr6D 90.395 177 13 4 3012 3188 429842527 429842355 5.900000e-56 230.0
37 TraesCS4D01G208700 chr6D 91.304 138 12 0 3051 3188 386929536 386929399 1.000000e-43 189.0
38 TraesCS4D01G208700 chr6D 89.130 138 13 2 4113 4249 292818709 292818573 3.630000e-38 171.0
39 TraesCS4D01G208700 chr6D 90.000 90 3 6 1 88 387950378 387950293 2.230000e-20 111.0
40 TraesCS4D01G208700 chr6D 96.923 65 2 0 1 65 35483814 35483878 8.020000e-20 110.0
41 TraesCS4D01G208700 chr5A 86.877 381 45 5 3012 3392 370242974 370243349 9.070000e-114 422.0
42 TraesCS4D01G208700 chr5A 84.000 325 40 5 3550 3864 622416697 622417019 1.230000e-77 302.0
43 TraesCS4D01G208700 chr5A 84.865 185 18 4 3972 4156 685743728 685743554 2.170000e-40 178.0
44 TraesCS4D01G208700 chr5A 93.939 66 3 1 1488 1552 653299429 653299494 1.740000e-16 99.0
45 TraesCS4D01G208700 chr1A 80.147 408 52 17 3754 4156 572707475 572707858 2.080000e-70 278.0
46 TraesCS4D01G208700 chr1A 82.824 262 36 7 3186 3445 471731860 471731606 7.640000e-55 226.0
47 TraesCS4D01G208700 chr3B 83.394 277 45 1 3186 3462 686493888 686493613 9.740000e-64 255.0
48 TraesCS4D01G208700 chr2A 83.394 277 43 2 3186 3461 669882820 669882546 3.500000e-63 254.0
49 TraesCS4D01G208700 chr2A 83.083 266 43 2 3186 3450 634885007 634885271 2.730000e-59 241.0
50 TraesCS4D01G208700 chr2B 78.750 400 54 16 3763 4156 17173986 17173612 9.810000e-59 239.0
51 TraesCS4D01G208700 chr2B 89.730 185 18 1 3013 3197 372771283 372771100 1.270000e-57 235.0
52 TraesCS4D01G208700 chr2B 95.946 74 3 0 1 74 516679025 516679098 3.710000e-23 121.0
53 TraesCS4D01G208700 chr5D 87.166 187 23 1 3013 3198 519416725 519416911 2.140000e-50 211.0
54 TraesCS4D01G208700 chr5D 86.207 116 16 0 3073 3188 447630398 447630513 7.970000e-25 126.0
55 TraesCS4D01G208700 chr5D 100.000 58 0 0 1498 1555 330893422 330893479 2.890000e-19 108.0
56 TraesCS4D01G208700 chr5D 93.846 65 4 0 1491 1555 150835736 150835672 1.740000e-16 99.0
57 TraesCS4D01G208700 chr5D 90.411 73 5 2 1483 1555 514862762 514862692 2.250000e-15 95.3
58 TraesCS4D01G208700 chr1D 81.992 261 36 9 3186 3445 372362445 372362195 2.140000e-50 211.0
59 TraesCS4D01G208700 chr1D 85.714 175 22 3 3012 3186 372362483 372362312 1.680000e-41 182.0
60 TraesCS4D01G208700 chr1D 84.615 182 25 2 3014 3195 478300275 478300453 2.170000e-40 178.0
61 TraesCS4D01G208700 chr1D 97.260 73 2 0 1 73 81214957 81214885 2.870000e-24 124.0
62 TraesCS4D01G208700 chr7D 78.571 280 52 6 3188 3467 43214071 43214342 2.170000e-40 178.0
63 TraesCS4D01G208700 chr3D 97.183 71 2 0 1 71 93229869 93229799 3.710000e-23 121.0
64 TraesCS4D01G208700 chr3D 88.889 90 6 4 1 87 214551084 214551172 2.890000e-19 108.0
65 TraesCS4D01G208700 chr2D 94.667 75 4 0 1 75 609695223 609695297 4.800000e-22 117.0
66 TraesCS4D01G208700 chr2D 89.773 88 5 4 1 86 197169886 197169801 8.020000e-20 110.0
67 TraesCS4D01G208700 chr5B 100.000 58 0 0 1498 1555 385995687 385995744 2.890000e-19 108.0
68 TraesCS4D01G208700 chr7B 96.774 62 2 0 1496 1557 748657099 748657160 3.730000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G208700 chr4D 359631800 359639363 7563 True 13969 13969 100.000000 1 7564 1 chr4D.!!$R4 7563
1 TraesCS4D01G208700 chr4B 444106692 444114970 8278 True 1683 6213 92.445429 99 7564 7 chr4B.!!$R1 7465
2 TraesCS4D01G208700 chr4A 105242942 105249989 7047 False 2463 5705 92.357750 601 7564 4 chr4A.!!$F2 6963
3 TraesCS4D01G208700 chr6A 428281356 428282605 1249 False 643 693 87.221000 4447 5621 2 chr6A.!!$F1 1174
4 TraesCS4D01G208700 chr6B 457399450 457400613 1163 True 296 643 89.035500 4142 5401 4 chr6B.!!$R1 1259
5 TraesCS4D01G208700 chr6D 292818155 292818709 554 True 337 503 89.877500 4113 5655 2 chr6D.!!$R2 1542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 220 0.174617 GAGCGAAGTCTGGGAGGAAG 59.825 60.000 0.00 0.00 0.00 3.46 F
1180 1221 0.317436 CTCGAGCTCTCCCGATTTCG 60.317 60.000 12.85 0.00 39.44 3.46 F
1726 1769 0.179020 TCAAAGCAGACAGGGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17 F
1743 1786 1.154150 GGTCTGCACTGAATTGCGC 60.154 57.895 0.00 0.00 46.20 6.09 F
2598 2669 1.202222 CCTGGAAGCATGCGATTCAAC 60.202 52.381 18.25 5.76 39.36 3.18 F
2907 2986 1.205417 GGTTTGCCCATGATTCACAGG 59.795 52.381 0.00 0.00 0.00 4.00 F
3129 3530 1.681264 TCTGTCCGATGTACGCATGAT 59.319 47.619 0.00 0.00 41.07 2.45 F
4322 4778 2.171840 TCTGTGCCTAGTCTTGGTCTC 58.828 52.381 2.16 0.00 0.00 3.36 F
4488 4946 2.945456 AGTCTGGTCACTGTAGTGTCA 58.055 47.619 11.44 10.12 45.76 3.58 F
6276 6934 0.813184 ATGTGGCTTGCCTTTCATCG 59.187 50.000 13.18 0.00 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1613 0.406750 TGACTACTCCCTCCGTTCCA 59.593 55.000 0.00 0.00 0.00 3.53 R
2016 2059 0.835276 CATCTGTGCCTCCATCTGGA 59.165 55.000 0.00 0.00 43.08 3.86 R
3577 3979 1.219124 GGTTCTGAGCGGCTCATCA 59.781 57.895 30.90 18.63 39.92 3.07 R
3666 4068 8.747538 AATAACTTTTAGGGCGTTCTGATAAT 57.252 30.769 0.00 0.00 0.00 1.28 R
3803 4209 0.241749 ATTGCACAACATGGCAGTCG 59.758 50.000 0.00 0.00 41.68 4.18 R
3954 4381 4.717233 TGACTGCAGTGTCAAAAACAAT 57.283 36.364 27.27 0.00 43.08 2.71 R
4349 4805 6.293698 ACCTTGACAGAAAATAGTTTACCGT 58.706 36.000 0.00 0.00 0.00 4.83 R
5471 6114 0.752054 CCCATGTGCGCCCAAATATT 59.248 50.000 4.18 0.00 0.00 1.28 R
6305 6963 2.653726 TGTTCTTCAAGCCTGAAAGCA 58.346 42.857 0.00 0.00 41.05 3.91 R
7400 8570 0.723981 AGTAGGAAGTACGCGTCGAC 59.276 55.000 18.63 10.13 36.66 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.977412 TCCAAGACGGATAATATAATAGCATGA 58.023 33.333 0.00 0.00 39.64 3.07
28 29 9.599866 CCAAGACGGATAATATAATAGCATGAA 57.400 33.333 0.00 0.00 36.56 2.57
76 77 2.401017 ACGTATCATCGTCATCCGTG 57.599 50.000 0.00 0.00 40.04 4.94
77 78 1.674441 ACGTATCATCGTCATCCGTGT 59.326 47.619 0.00 0.00 40.04 4.49
78 79 2.044135 CGTATCATCGTCATCCGTGTG 58.956 52.381 0.00 0.00 37.94 3.82
79 80 2.286772 CGTATCATCGTCATCCGTGTGA 60.287 50.000 0.00 0.00 36.96 3.58
80 81 2.498807 ATCATCGTCATCCGTGTGAG 57.501 50.000 0.00 0.00 36.37 3.51
81 82 0.179137 TCATCGTCATCCGTGTGAGC 60.179 55.000 0.00 0.00 37.94 4.26
82 83 1.226688 ATCGTCATCCGTGTGAGCG 60.227 57.895 0.00 0.00 37.94 5.03
83 84 3.545481 CGTCATCCGTGTGAGCGC 61.545 66.667 0.00 0.00 0.00 5.92
84 85 3.188786 GTCATCCGTGTGAGCGCC 61.189 66.667 2.29 0.00 0.00 6.53
85 86 4.794439 TCATCCGTGTGAGCGCCG 62.794 66.667 2.29 0.00 0.00 6.46
91 92 4.450122 GTGTGAGCGCCGCATGTG 62.450 66.667 13.36 0.00 37.64 3.21
92 93 4.986645 TGTGAGCGCCGCATGTGT 62.987 61.111 13.36 0.00 0.00 3.72
93 94 4.450122 GTGAGCGCCGCATGTGTG 62.450 66.667 13.36 0.00 0.00 3.82
94 95 4.678499 TGAGCGCCGCATGTGTGA 62.678 61.111 13.36 0.00 0.00 3.58
95 96 3.857854 GAGCGCCGCATGTGTGAG 61.858 66.667 13.36 0.12 0.00 3.51
142 146 2.268920 GCAGCGTGATTCCCCTCA 59.731 61.111 0.00 0.00 0.00 3.86
143 147 2.109126 GCAGCGTGATTCCCCTCAC 61.109 63.158 0.00 0.00 41.73 3.51
144 148 1.599047 CAGCGTGATTCCCCTCACT 59.401 57.895 3.07 0.00 42.73 3.41
152 156 2.185310 ATTCCCCTCACTGTCACCGC 62.185 60.000 0.00 0.00 0.00 5.68
197 201 0.734889 GGCCAATCCATGAACTCGTG 59.265 55.000 0.00 0.00 34.01 4.35
216 220 0.174617 GAGCGAAGTCTGGGAGGAAG 59.825 60.000 0.00 0.00 0.00 3.46
234 238 0.611714 AGTGTTTACCCTAGCCACCG 59.388 55.000 0.00 0.00 0.00 4.94
244 248 1.972660 CTAGCCACCGAGGGAAAGGG 61.973 65.000 0.00 0.00 38.09 3.95
247 251 1.299976 CCACCGAGGGAAAGGGAAG 59.700 63.158 0.00 0.00 0.00 3.46
250 254 1.073284 CACCGAGGGAAAGGGAAGAAA 59.927 52.381 0.00 0.00 0.00 2.52
253 257 2.488347 CCGAGGGAAAGGGAAGAAAACA 60.488 50.000 0.00 0.00 0.00 2.83
254 258 2.552743 CGAGGGAAAGGGAAGAAAACAC 59.447 50.000 0.00 0.00 0.00 3.32
255 259 3.747708 CGAGGGAAAGGGAAGAAAACACT 60.748 47.826 0.00 0.00 0.00 3.55
256 260 4.215908 GAGGGAAAGGGAAGAAAACACTT 58.784 43.478 0.00 0.00 31.94 3.16
257 261 3.960755 AGGGAAAGGGAAGAAAACACTTG 59.039 43.478 0.00 0.00 31.00 3.16
258 262 3.069586 GGGAAAGGGAAGAAAACACTTGG 59.930 47.826 0.00 0.00 31.00 3.61
260 264 4.038042 GGAAAGGGAAGAAAACACTTGGAG 59.962 45.833 0.00 0.00 31.00 3.86
262 266 4.519906 AGGGAAGAAAACACTTGGAGAA 57.480 40.909 0.00 0.00 0.00 2.87
263 267 4.464947 AGGGAAGAAAACACTTGGAGAAG 58.535 43.478 0.00 0.00 35.07 2.85
275 279 6.169094 ACACTTGGAGAAGAAGTCACATATG 58.831 40.000 0.00 0.00 31.05 1.78
277 281 7.046652 CACTTGGAGAAGAAGTCACATATGAT 58.953 38.462 10.38 0.00 33.40 2.45
286 290 6.106003 AGAAGTCACATATGATTTACGTGCA 58.894 36.000 10.38 0.00 35.10 4.57
329 333 7.897575 TTTTTCCAAAAATGATGATAACCCG 57.102 32.000 0.00 0.00 33.29 5.28
330 334 6.842437 TTTCCAAAAATGATGATAACCCGA 57.158 33.333 0.00 0.00 0.00 5.14
331 335 5.828299 TCCAAAAATGATGATAACCCGAC 57.172 39.130 0.00 0.00 0.00 4.79
333 337 4.644685 CCAAAAATGATGATAACCCGACCT 59.355 41.667 0.00 0.00 0.00 3.85
334 338 5.221048 CCAAAAATGATGATAACCCGACCTC 60.221 44.000 0.00 0.00 0.00 3.85
365 373 5.528690 TGATGCACACAGCTATCCTATTTTC 59.471 40.000 0.00 0.00 45.94 2.29
368 376 6.591001 TGCACACAGCTATCCTATTTTCATA 58.409 36.000 0.00 0.00 45.94 2.15
371 379 7.117523 GCACACAGCTATCCTATTTTCATAGAG 59.882 40.741 0.00 0.00 41.15 2.43
372 380 8.147058 CACACAGCTATCCTATTTTCATAGAGT 58.853 37.037 0.00 0.00 35.20 3.24
429 439 9.141400 GCCCTATACATAAAAATTCTCTCGTAG 57.859 37.037 0.00 0.00 0.00 3.51
434 444 7.681939 ACATAAAAATTCTCTCGTAGCCAAA 57.318 32.000 0.00 0.00 0.00 3.28
452 462 7.502120 AGCCAAAATAGAGTTGCATATACTG 57.498 36.000 0.00 0.00 0.00 2.74
461 471 9.751542 ATAGAGTTGCATATACTGTGTCTAAAC 57.248 33.333 0.00 0.00 0.00 2.01
462 472 6.752351 AGAGTTGCATATACTGTGTCTAAACG 59.248 38.462 0.00 0.00 0.00 3.60
468 478 0.320697 ACTGTGTCTAAACGGAGGGC 59.679 55.000 0.00 0.00 0.00 5.19
478 488 3.945640 AAACGGAGGGCCTTTATGTAT 57.054 42.857 7.89 0.00 0.00 2.29
508 534 2.429250 TCGTGCCTCGAGATTGGAATAA 59.571 45.455 15.71 0.00 44.01 1.40
599 625 4.915667 TCAGATTTTCGACTACTGACGTTG 59.084 41.667 0.00 0.00 33.57 4.10
600 626 4.680110 CAGATTTTCGACTACTGACGTTGT 59.320 41.667 0.00 0.00 33.48 3.32
601 627 5.854866 CAGATTTTCGACTACTGACGTTGTA 59.145 40.000 0.00 0.00 33.48 2.41
624 650 0.743345 AAGAAATCGCCGGTGTAGCC 60.743 55.000 16.01 3.62 0.00 3.93
665 691 2.027625 CCGGCGACAGAGTTGGAAC 61.028 63.158 9.30 0.00 0.00 3.62
793 824 1.095600 GGCCGTTCCAAATTCTCTCC 58.904 55.000 0.00 0.00 34.01 3.71
874 907 1.661498 CTCAGCAGCGCTCCTCTACA 61.661 60.000 7.13 0.00 36.40 2.74
878 911 1.893786 CAGCGCTCCTCTACAACCT 59.106 57.895 7.13 0.00 0.00 3.50
902 935 1.001248 TCTAGGCAGGGGTTAGCGT 59.999 57.895 0.00 0.00 0.00 5.07
942 975 1.474498 CCGTCCCAAACCCTAGCATAC 60.474 57.143 0.00 0.00 0.00 2.39
1180 1221 0.317436 CTCGAGCTCTCCCGATTTCG 60.317 60.000 12.85 0.00 39.44 3.46
1208 1249 4.008074 ACTATGCATATGCTTACCGCTT 57.992 40.909 27.13 5.90 42.66 4.68
1291 1332 1.922545 GAGCTGATTTTGGCGAATTGC 59.077 47.619 0.00 0.00 45.38 3.56
1348 1389 5.808403 AGACTTTAGCGATCGTAGTGTTAG 58.192 41.667 17.81 7.86 0.00 2.34
1386 1427 7.295201 TGTCGTTTGTTGTAGCTTAATGATTC 58.705 34.615 0.00 0.00 0.00 2.52
1495 1536 9.857957 GCAATTCCTACCTAATACTAGTATGAC 57.142 37.037 16.11 0.00 0.00 3.06
1570 1613 8.747538 ACTACATTCGAAAGGGCTTATATTTT 57.252 30.769 0.00 0.00 0.00 1.82
1673 1716 9.066892 TCAAATAGGATATTGTAATTGTCCTGC 57.933 33.333 15.69 0.00 39.53 4.85
1726 1769 0.179020 TCAAAGCAGACAGGGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
1743 1786 1.154150 GGTCTGCACTGAATTGCGC 60.154 57.895 0.00 0.00 46.20 6.09
1816 1859 3.005554 ACATCATTTGGCGTCTCTTCAG 58.994 45.455 0.00 0.00 0.00 3.02
1956 1999 6.978080 TCTTTACTTGGCACTTTCAAACAATC 59.022 34.615 0.00 0.00 0.00 2.67
2016 2059 6.264067 GCTATGAAGGGCTTGAAGTTATCAAT 59.736 38.462 0.00 0.00 46.62 2.57
2119 2162 7.374975 ACAATAATCTATTCTTCGGGGAAGA 57.625 36.000 4.04 4.04 45.45 2.87
2139 2182 7.254795 GGGAAGACATAACCTCATATTGTTTCG 60.255 40.741 0.00 0.00 0.00 3.46
2160 2203 3.310774 CGGACACTCAGCCATTATGAAAG 59.689 47.826 0.00 0.00 0.00 2.62
2170 2213 3.242870 GCCATTATGAAAGCAACTCTCGG 60.243 47.826 0.00 0.00 0.00 4.63
2233 2276 6.322456 TCTCATAAGAGGAACTGATCGTTGAT 59.678 38.462 7.51 0.00 41.55 2.57
2316 2359 3.041946 TGGTGTTTTGGGGCTTACATTT 58.958 40.909 0.00 0.00 0.00 2.32
2327 2370 4.827284 GGGGCTTACATTTATGCTATGTGT 59.173 41.667 0.00 0.00 36.89 3.72
2598 2669 1.202222 CCTGGAAGCATGCGATTCAAC 60.202 52.381 18.25 5.76 39.36 3.18
2626 2697 7.709601 AGTATTCTCCCCTTTAATTTGAGGTT 58.290 34.615 6.17 0.00 0.00 3.50
2741 2812 8.702163 AATTAGTTTAGCAAATTTGATTCGGG 57.298 30.769 22.31 0.00 0.00 5.14
2808 2879 9.408648 CCAAAATACCACCTATTTAGTCATCTT 57.591 33.333 0.00 0.00 34.45 2.40
2907 2986 1.205417 GGTTTGCCCATGATTCACAGG 59.795 52.381 0.00 0.00 0.00 4.00
2982 3061 2.630580 GGTGAACCCATGGCAAAAACTA 59.369 45.455 6.09 0.00 0.00 2.24
3007 3086 6.678568 AGGTTCAGTGATAATCCTATCCTG 57.321 41.667 0.00 0.00 35.86 3.86
3013 3414 8.586879 TCAGTGATAATCCTATCCTGTATGAG 57.413 38.462 0.00 0.00 35.92 2.90
3116 3517 1.683385 TGATCCACTAGCATCTGTCCG 59.317 52.381 0.00 0.00 0.00 4.79
3129 3530 1.681264 TCTGTCCGATGTACGCATGAT 59.319 47.619 0.00 0.00 41.07 2.45
3229 3630 7.161773 TGTTGTAGCCGTTAGATTTACTAGT 57.838 36.000 0.00 0.00 32.30 2.57
3336 3737 4.782156 TCACACTGCATTTAATTGTGACG 58.218 39.130 6.97 0.00 41.20 4.35
3360 3761 7.755822 ACGTGCAAAACTTTTCATGTTAAGTTA 59.244 29.630 20.34 8.77 42.17 2.24
3388 3790 4.472691 TCTTGTGCAGAAATTTCTCACG 57.527 40.909 27.14 20.26 37.76 4.35
3391 3793 4.990543 TGTGCAGAAATTTCTCACGTAG 57.009 40.909 27.14 16.10 37.76 3.51
3476 3878 2.415168 CGGCAACACACGAATAATGACT 59.585 45.455 0.00 0.00 0.00 3.41
3531 3933 4.536090 TGTGGTGTTCTTCATAGAGGGAAT 59.464 41.667 0.00 0.00 0.00 3.01
3543 3945 9.487790 CTTCATAGAGGGAATTATTTCTCTGAC 57.512 37.037 16.33 0.00 42.94 3.51
3548 3950 6.012508 AGAGGGAATTATTTCTCTGACAACCA 60.013 38.462 4.48 0.00 42.94 3.67
3551 3953 6.378280 GGGAATTATTTCTCTGACAACCATGT 59.622 38.462 0.00 0.00 35.79 3.21
3554 3956 9.346725 GAATTATTTCTCTGACAACCATGTTTC 57.653 33.333 0.00 0.00 40.74 2.78
3613 4015 6.990349 TCAGAACCTCTCACGATTTTTAGTTT 59.010 34.615 0.00 0.00 0.00 2.66
3677 4079 4.926860 TGACACTGCAATTATCAGAACG 57.073 40.909 12.27 4.83 35.61 3.95
3696 4098 8.313292 TCAGAACGCCCTAAAAGTTATTACTAA 58.687 33.333 0.00 0.00 33.17 2.24
3748 4152 9.290988 TGCTGTTGGTTTCTATCAAACTATAAA 57.709 29.630 0.00 0.00 0.00 1.40
3803 4209 6.681729 TGGATGGGATAGGTATTCAGTAAC 57.318 41.667 0.00 0.00 0.00 2.50
3824 4230 2.476686 CGACTGCCATGTTGTGCAATAG 60.477 50.000 0.00 0.00 36.98 1.73
3828 4234 2.228582 TGCCATGTTGTGCAATAGACAC 59.771 45.455 0.00 0.00 38.55 3.67
3831 4237 4.559300 GCCATGTTGTGCAATAGACACTTT 60.559 41.667 0.00 0.00 38.86 2.66
3851 4257 8.755028 ACACTTTACCTTTTTATGGTGTTCTTT 58.245 29.630 0.00 0.00 38.42 2.52
3864 4270 5.611374 TGGTGTTCTTTCTAGAGGAAACTG 58.389 41.667 10.46 0.00 44.43 3.16
4127 4554 5.907207 TGTACTGCTAAGCTCTGATTTAGG 58.093 41.667 0.00 0.62 0.00 2.69
4317 4773 4.756642 TGTTTGATTCTGTGCCTAGTCTTG 59.243 41.667 0.00 0.00 0.00 3.02
4322 4778 2.171840 TCTGTGCCTAGTCTTGGTCTC 58.828 52.381 2.16 0.00 0.00 3.36
4347 4803 9.445878 TCTATATAATCAGTAGTACTTGACCCG 57.554 37.037 0.00 0.00 0.00 5.28
4351 4807 3.002791 TCAGTAGTACTTGACCCGTACG 58.997 50.000 8.69 8.69 41.51 3.67
4389 4845 5.470098 TGTCAAGGTTCATCAAAGTTAGCTC 59.530 40.000 0.00 0.00 0.00 4.09
4390 4846 5.703130 GTCAAGGTTCATCAAAGTTAGCTCT 59.297 40.000 0.00 0.00 0.00 4.09
4393 4849 6.120507 AGGTTCATCAAAGTTAGCTCTTCT 57.879 37.500 0.00 0.00 0.00 2.85
4410 4868 7.721402 AGCTCTTCTGTACTATACATTTCTGG 58.279 38.462 0.00 0.00 38.15 3.86
4488 4946 2.945456 AGTCTGGTCACTGTAGTGTCA 58.055 47.619 11.44 10.12 45.76 3.58
4604 5088 3.118482 CCTAAGCATCACATGGAGTCTGT 60.118 47.826 0.00 0.00 0.00 3.41
5208 5837 3.675225 ACATCACATCGAAGTTGAAGACG 59.325 43.478 0.00 0.00 0.00 4.18
5408 6051 6.719829 TGTTTCTTCATCACAGGACTAGAGTA 59.280 38.462 0.00 0.00 0.00 2.59
5417 6060 7.450124 TCACAGGACTAGAGTAACACTTAAG 57.550 40.000 0.00 0.00 0.00 1.85
5720 6370 8.159344 AGTTAATTCTAGTTCATAATGCAGCC 57.841 34.615 0.00 0.00 0.00 4.85
5924 6581 8.462811 TCTTTCAGTATTCATCAGTACAGAGAC 58.537 37.037 0.00 0.00 0.00 3.36
5926 6583 7.561021 TCAGTATTCATCAGTACAGAGACTC 57.439 40.000 0.00 0.00 0.00 3.36
6181 6839 3.127030 GCACACAAGAGCAGGTAATTACC 59.873 47.826 24.71 24.71 46.82 2.85
6276 6934 0.813184 ATGTGGCTTGCCTTTCATCG 59.187 50.000 13.18 0.00 0.00 3.84
6302 6960 9.507280 GGTATTTATCTGATGTTTGTGTTCATG 57.493 33.333 0.00 0.00 0.00 3.07
6398 7056 4.685628 CCAAAATGGTTCAAAATGACCGAG 59.314 41.667 0.00 0.00 31.35 4.63
6413 7071 1.173444 CCGAGGACATCTCCCCTACG 61.173 65.000 0.00 0.00 39.30 3.51
6506 7164 3.429141 GTCGTCGCCGAGGAGACA 61.429 66.667 22.27 9.56 45.26 3.41
6512 7170 2.179517 GCCGAGGAGACAGACGTG 59.820 66.667 0.00 0.00 0.00 4.49
6545 7203 1.002624 CAACCCGTGGCAGTATGGT 60.003 57.895 0.00 0.00 35.86 3.55
6594 7252 5.499004 GGTCTGAAGCCACCCATATATTA 57.501 43.478 0.00 0.00 0.00 0.98
6595 7253 6.067217 GGTCTGAAGCCACCCATATATTAT 57.933 41.667 0.00 0.00 0.00 1.28
6603 7261 8.422577 AAGCCACCCATATATTATTTTTCTCC 57.577 34.615 0.00 0.00 0.00 3.71
6668 7326 7.515684 CGGTTTTCGTGCCTTGTAGTATTATAC 60.516 40.741 0.00 0.00 0.00 1.47
6755 7413 5.109903 AGTCCATATTCTGTTGTCGTAAGC 58.890 41.667 0.00 0.00 37.18 3.09
6813 7472 7.888250 ATTTGAGTGGGAAATTAGGAAGATC 57.112 36.000 0.00 0.00 0.00 2.75
6828 7487 1.691127 AGATCATTATCGCGTCGCAG 58.309 50.000 18.75 10.24 37.19 5.18
6991 7652 3.388703 CTGAGAGGCAGGCAGAGGC 62.389 68.421 0.00 0.00 41.07 4.70
7006 7667 1.692519 AGAGGCGTGGACTGTAACTTT 59.307 47.619 0.00 0.00 0.00 2.66
7007 7668 1.798813 GAGGCGTGGACTGTAACTTTG 59.201 52.381 0.00 0.00 0.00 2.77
7008 7669 0.237498 GGCGTGGACTGTAACTTTGC 59.763 55.000 0.00 0.00 0.00 3.68
7009 7670 1.226746 GCGTGGACTGTAACTTTGCT 58.773 50.000 0.00 0.00 0.00 3.91
7010 7671 1.194772 GCGTGGACTGTAACTTTGCTC 59.805 52.381 0.00 0.00 0.00 4.26
7011 7672 2.755650 CGTGGACTGTAACTTTGCTCT 58.244 47.619 0.00 0.00 0.00 4.09
7012 7673 2.731976 CGTGGACTGTAACTTTGCTCTC 59.268 50.000 0.00 0.00 0.00 3.20
7013 7674 3.553096 CGTGGACTGTAACTTTGCTCTCT 60.553 47.826 0.00 0.00 0.00 3.10
7014 7675 3.743396 GTGGACTGTAACTTTGCTCTCTG 59.257 47.826 0.00 0.00 0.00 3.35
7015 7676 3.388024 TGGACTGTAACTTTGCTCTCTGT 59.612 43.478 0.00 0.00 0.00 3.41
7016 7677 3.991121 GGACTGTAACTTTGCTCTCTGTC 59.009 47.826 0.00 0.00 0.00 3.51
7017 7678 4.501571 GGACTGTAACTTTGCTCTCTGTCA 60.502 45.833 0.00 0.00 0.00 3.58
7018 7679 5.023533 ACTGTAACTTTGCTCTCTGTCAA 57.976 39.130 0.00 0.00 0.00 3.18
7019 7680 5.053145 ACTGTAACTTTGCTCTCTGTCAAG 58.947 41.667 0.00 0.00 0.00 3.02
7020 7681 5.163405 ACTGTAACTTTGCTCTCTGTCAAGA 60.163 40.000 0.00 0.00 0.00 3.02
7021 7682 5.670485 TGTAACTTTGCTCTCTGTCAAGAA 58.330 37.500 0.00 0.00 30.03 2.52
7022 7683 6.112734 TGTAACTTTGCTCTCTGTCAAGAAA 58.887 36.000 0.00 0.00 30.03 2.52
7023 7684 5.747951 AACTTTGCTCTCTGTCAAGAAAG 57.252 39.130 0.00 0.00 30.03 2.62
7024 7685 4.775236 ACTTTGCTCTCTGTCAAGAAAGT 58.225 39.130 0.00 0.00 30.03 2.66
7025 7686 5.189180 ACTTTGCTCTCTGTCAAGAAAGTT 58.811 37.500 0.00 0.00 28.46 2.66
7026 7687 5.065731 ACTTTGCTCTCTGTCAAGAAAGTTG 59.934 40.000 0.00 0.00 28.46 3.16
7027 7688 4.142609 TGCTCTCTGTCAAGAAAGTTGT 57.857 40.909 0.00 0.00 30.03 3.32
7028 7689 4.517285 TGCTCTCTGTCAAGAAAGTTGTT 58.483 39.130 0.00 0.00 30.03 2.83
7029 7690 4.333649 TGCTCTCTGTCAAGAAAGTTGTTG 59.666 41.667 0.00 0.00 33.19 3.33
7030 7691 4.572389 GCTCTCTGTCAAGAAAGTTGTTGA 59.428 41.667 0.00 0.00 38.01 3.18
7031 7692 5.238214 GCTCTCTGTCAAGAAAGTTGTTGAT 59.762 40.000 6.87 0.00 41.59 2.57
7032 7693 6.238593 GCTCTCTGTCAAGAAAGTTGTTGATT 60.239 38.462 6.87 0.00 41.59 2.57
7033 7694 7.019774 TCTCTGTCAAGAAAGTTGTTGATTG 57.980 36.000 6.87 4.14 41.59 2.67
7034 7695 6.038603 TCTCTGTCAAGAAAGTTGTTGATTGG 59.961 38.462 6.87 2.16 41.59 3.16
7035 7696 5.885352 TCTGTCAAGAAAGTTGTTGATTGGA 59.115 36.000 6.87 4.05 41.59 3.53
7036 7697 6.547141 TCTGTCAAGAAAGTTGTTGATTGGAT 59.453 34.615 6.87 0.00 41.59 3.41
7037 7698 6.738114 TGTCAAGAAAGTTGTTGATTGGATC 58.262 36.000 6.87 0.00 41.59 3.36
7038 7699 6.320926 TGTCAAGAAAGTTGTTGATTGGATCA 59.679 34.615 6.87 0.00 41.59 2.92
7039 7700 7.014518 TGTCAAGAAAGTTGTTGATTGGATCAT 59.985 33.333 6.87 0.00 41.59 2.45
7040 7701 7.327761 GTCAAGAAAGTTGTTGATTGGATCATG 59.672 37.037 6.87 0.00 41.59 3.07
7041 7702 5.717119 AGAAAGTTGTTGATTGGATCATGC 58.283 37.500 0.00 0.00 39.39 4.06
7042 7703 5.479375 AGAAAGTTGTTGATTGGATCATGCT 59.521 36.000 0.00 0.00 39.39 3.79
7043 7704 5.733620 AAGTTGTTGATTGGATCATGCTT 57.266 34.783 0.00 0.00 39.39 3.91
7044 7705 5.733620 AGTTGTTGATTGGATCATGCTTT 57.266 34.783 0.00 0.00 39.39 3.51
7045 7706 5.475719 AGTTGTTGATTGGATCATGCTTTG 58.524 37.500 0.00 0.00 39.39 2.77
7046 7707 3.852286 TGTTGATTGGATCATGCTTTGC 58.148 40.909 0.00 0.00 39.39 3.68
7047 7708 3.512329 TGTTGATTGGATCATGCTTTGCT 59.488 39.130 0.00 0.00 39.39 3.91
7048 7709 4.110482 GTTGATTGGATCATGCTTTGCTC 58.890 43.478 0.00 0.00 39.39 4.26
7049 7710 3.628008 TGATTGGATCATGCTTTGCTCT 58.372 40.909 0.00 0.00 33.59 4.09
7050 7711 3.630769 TGATTGGATCATGCTTTGCTCTC 59.369 43.478 0.00 0.00 33.59 3.20
7051 7712 3.361281 TTGGATCATGCTTTGCTCTCT 57.639 42.857 0.00 0.00 0.00 3.10
7052 7713 2.915349 TGGATCATGCTTTGCTCTCTC 58.085 47.619 0.00 0.00 0.00 3.20
7053 7714 2.504585 TGGATCATGCTTTGCTCTCTCT 59.495 45.455 0.00 0.00 0.00 3.10
7054 7715 3.132925 GGATCATGCTTTGCTCTCTCTC 58.867 50.000 0.00 0.00 0.00 3.20
7055 7716 3.431905 GGATCATGCTTTGCTCTCTCTCA 60.432 47.826 0.00 0.00 0.00 3.27
7056 7717 3.690475 TCATGCTTTGCTCTCTCTCAA 57.310 42.857 0.00 0.00 0.00 3.02
7057 7718 3.597255 TCATGCTTTGCTCTCTCTCAAG 58.403 45.455 0.00 0.00 0.00 3.02
7058 7719 3.260128 TCATGCTTTGCTCTCTCTCAAGA 59.740 43.478 0.00 0.00 0.00 3.02
7059 7720 3.758755 TGCTTTGCTCTCTCTCAAGAA 57.241 42.857 0.00 0.00 0.00 2.52
7060 7721 4.077300 TGCTTTGCTCTCTCTCAAGAAA 57.923 40.909 0.00 0.00 0.00 2.52
7061 7722 4.063689 TGCTTTGCTCTCTCTCAAGAAAG 58.936 43.478 0.00 0.00 0.00 2.62
7062 7723 4.064388 GCTTTGCTCTCTCTCAAGAAAGT 58.936 43.478 0.00 0.00 0.00 2.66
7063 7724 4.514816 GCTTTGCTCTCTCTCAAGAAAGTT 59.485 41.667 0.00 0.00 0.00 2.66
7064 7725 5.560567 GCTTTGCTCTCTCTCAAGAAAGTTG 60.561 44.000 0.00 0.00 0.00 3.16
7065 7726 4.679373 TGCTCTCTCTCAAGAAAGTTGT 57.321 40.909 0.00 0.00 0.00 3.32
7066 7727 5.028549 TGCTCTCTCTCAAGAAAGTTGTT 57.971 39.130 0.00 0.00 0.00 2.83
7067 7728 4.813161 TGCTCTCTCTCAAGAAAGTTGTTG 59.187 41.667 0.00 0.00 33.19 3.33
7068 7729 5.053145 GCTCTCTCTCAAGAAAGTTGTTGA 58.947 41.667 3.87 3.87 38.01 3.18
7069 7730 5.700373 GCTCTCTCTCAAGAAAGTTGTTGAT 59.300 40.000 4.30 0.00 39.34 2.57
7070 7731 6.204495 GCTCTCTCTCAAGAAAGTTGTTGATT 59.796 38.462 4.30 0.00 39.34 2.57
7071 7732 7.488187 TCTCTCTCAAGAAAGTTGTTGATTG 57.512 36.000 4.30 1.91 39.34 2.67
7072 7733 6.484643 TCTCTCTCAAGAAAGTTGTTGATTGG 59.515 38.462 4.30 0.00 39.34 3.16
7073 7734 6.356556 TCTCTCAAGAAAGTTGTTGATTGGA 58.643 36.000 4.30 0.00 39.34 3.53
7074 7735 7.000472 TCTCTCAAGAAAGTTGTTGATTGGAT 59.000 34.615 4.30 0.00 39.34 3.41
7075 7736 7.173907 TCTCTCAAGAAAGTTGTTGATTGGATC 59.826 37.037 4.30 0.00 39.34 3.36
7076 7737 6.772233 TCTCAAGAAAGTTGTTGATTGGATCA 59.228 34.615 4.30 0.00 39.34 2.92
7077 7738 7.449395 TCTCAAGAAAGTTGTTGATTGGATCAT 59.551 33.333 4.30 0.00 39.34 2.45
7078 7739 7.372714 TCAAGAAAGTTGTTGATTGGATCATG 58.627 34.615 0.00 0.00 39.39 3.07
7079 7740 5.717119 AGAAAGTTGTTGATTGGATCATGC 58.283 37.500 0.00 0.00 39.39 4.06
7080 7741 5.479375 AGAAAGTTGTTGATTGGATCATGCT 59.521 36.000 0.00 0.00 39.39 3.79
7081 7742 5.733620 AAGTTGTTGATTGGATCATGCTT 57.266 34.783 0.00 0.00 39.39 3.91
7082 7743 5.733620 AGTTGTTGATTGGATCATGCTTT 57.266 34.783 0.00 0.00 39.39 3.51
7095 7756 3.597255 TCATGCTTTGCTCTCTCTCAAG 58.403 45.455 0.00 0.00 0.00 3.02
7195 7860 1.514657 CATGCGATGTTTGCGTGGG 60.515 57.895 1.67 0.00 43.86 4.61
7286 8439 2.234613 GCAGTCTTTAGTGCGTGCA 58.765 52.632 0.00 0.00 41.99 4.57
7287 8440 0.110644 GCAGTCTTTAGTGCGTGCAC 60.111 55.000 16.91 16.91 41.99 4.57
7315 8468 2.014010 AATGGAAAAGCTCAAGGCCA 57.986 45.000 5.01 0.00 43.05 5.36
7332 8502 4.212716 AGGCCACGTAGATGAACATACTA 58.787 43.478 5.01 0.00 0.00 1.82
7358 8528 3.889134 TTGTGCTCCTGCTCCGCTG 62.889 63.158 0.00 0.00 40.48 5.18
7381 8551 2.795329 ACCACCTCCTAAATGCAGTTG 58.205 47.619 10.14 0.00 0.00 3.16
7400 8570 2.439409 TGCATCAGGATCAGTTTGGTG 58.561 47.619 0.00 0.00 0.00 4.17
7421 8591 0.027324 CGACGCGTACTTCCTACTCC 59.973 60.000 13.97 0.00 0.00 3.85
7451 8621 5.964758 AGAGACTAGTTGCAGATTCAGAAG 58.035 41.667 0.00 0.00 0.00 2.85
7495 8666 3.281727 TTTGGATGTGATAGTGGGAGC 57.718 47.619 0.00 0.00 0.00 4.70
7527 8699 1.439679 CGAGGCTGAAAGTTGGGTAC 58.560 55.000 0.00 0.00 35.30 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.599866 TTCATGCTATTATATTATCCGTCTTGG 57.400 33.333 0.00 0.00 40.09 3.61
67 68 3.188786 GGCGCTCACACGGATGAC 61.189 66.667 7.64 0.00 0.00 3.06
68 69 4.794439 CGGCGCTCACACGGATGA 62.794 66.667 7.64 0.00 0.00 2.92
74 75 4.450122 CACATGCGGCGCTCACAC 62.450 66.667 33.26 2.78 0.00 3.82
75 76 4.986645 ACACATGCGGCGCTCACA 62.987 61.111 33.26 13.41 0.00 3.58
76 77 4.450122 CACACATGCGGCGCTCAC 62.450 66.667 33.26 4.07 0.00 3.51
77 78 4.678499 TCACACATGCGGCGCTCA 62.678 61.111 33.26 14.71 0.00 4.26
78 79 3.857854 CTCACACATGCGGCGCTC 61.858 66.667 33.26 5.35 0.00 5.03
84 85 2.535485 TTAGGGGCCTCACACATGCG 62.535 60.000 4.79 0.00 0.00 4.73
85 86 1.032114 GTTAGGGGCCTCACACATGC 61.032 60.000 4.79 0.00 0.00 4.06
86 87 0.394352 GGTTAGGGGCCTCACACATG 60.394 60.000 4.79 0.00 0.00 3.21
87 88 0.550147 AGGTTAGGGGCCTCACACAT 60.550 55.000 4.79 0.00 0.00 3.21
88 89 0.117541 TAGGTTAGGGGCCTCACACA 59.882 55.000 4.79 0.00 37.54 3.72
89 90 1.282382 TTAGGTTAGGGGCCTCACAC 58.718 55.000 4.79 0.00 37.54 3.82
90 91 1.631898 GTTTAGGTTAGGGGCCTCACA 59.368 52.381 4.79 0.00 37.54 3.58
91 92 1.914108 AGTTTAGGTTAGGGGCCTCAC 59.086 52.381 4.79 0.00 37.54 3.51
92 93 2.354261 AGTTTAGGTTAGGGGCCTCA 57.646 50.000 4.79 0.00 37.54 3.86
93 94 5.512749 GCTAATAGTTTAGGTTAGGGGCCTC 60.513 48.000 0.84 0.00 36.18 4.70
94 95 4.350225 GCTAATAGTTTAGGTTAGGGGCCT 59.650 45.833 0.84 0.00 36.18 5.19
95 96 4.506271 GGCTAATAGTTTAGGTTAGGGGCC 60.506 50.000 0.00 0.00 36.18 5.80
96 97 4.649692 GGCTAATAGTTTAGGTTAGGGGC 58.350 47.826 0.00 0.00 36.18 5.80
97 98 4.590222 TCGGCTAATAGTTTAGGTTAGGGG 59.410 45.833 0.00 0.00 36.18 4.79
131 135 0.984230 GGTGACAGTGAGGGGAATCA 59.016 55.000 0.00 0.00 0.00 2.57
138 142 4.742201 CGGGCGGTGACAGTGAGG 62.742 72.222 0.00 0.00 0.00 3.86
158 162 1.270826 CTCCTTTCTGTCTGTCGCTCA 59.729 52.381 0.00 0.00 0.00 4.26
161 165 1.016653 GCCTCCTTTCTGTCTGTCGC 61.017 60.000 0.00 0.00 0.00 5.19
162 166 0.390472 GGCCTCCTTTCTGTCTGTCG 60.390 60.000 0.00 0.00 0.00 4.35
165 169 2.363683 GATTGGCCTCCTTTCTGTCTG 58.636 52.381 3.32 0.00 0.00 3.51
168 172 1.075601 TGGATTGGCCTCCTTTCTGT 58.924 50.000 12.06 0.00 36.20 3.41
169 173 2.029623 CATGGATTGGCCTCCTTTCTG 58.970 52.381 12.06 1.96 36.20 3.02
173 177 1.642762 AGTTCATGGATTGGCCTCCTT 59.357 47.619 12.06 3.30 36.20 3.36
174 178 1.213926 GAGTTCATGGATTGGCCTCCT 59.786 52.381 12.06 0.00 36.20 3.69
197 201 0.174617 CTTCCTCCCAGACTTCGCTC 59.825 60.000 0.00 0.00 0.00 5.03
216 220 0.609662 TCGGTGGCTAGGGTAAACAC 59.390 55.000 0.00 0.00 0.00 3.32
234 238 3.833732 AGTGTTTTCTTCCCTTTCCCTC 58.166 45.455 0.00 0.00 0.00 4.30
239 243 4.867086 TCTCCAAGTGTTTTCTTCCCTTT 58.133 39.130 0.00 0.00 0.00 3.11
244 248 6.316390 TGACTTCTTCTCCAAGTGTTTTCTTC 59.684 38.462 0.00 0.00 34.10 2.87
247 251 5.354234 TGTGACTTCTTCTCCAAGTGTTTTC 59.646 40.000 0.00 0.00 34.10 2.29
250 254 4.487714 TGTGACTTCTTCTCCAAGTGTT 57.512 40.909 0.00 0.00 34.10 3.32
253 257 6.611613 TCATATGTGACTTCTTCTCCAAGT 57.388 37.500 1.90 0.00 36.77 3.16
254 258 8.503458 AAATCATATGTGACTTCTTCTCCAAG 57.497 34.615 1.90 0.00 37.14 3.61
255 259 9.383519 GTAAATCATATGTGACTTCTTCTCCAA 57.616 33.333 1.90 0.00 37.14 3.53
256 260 7.706607 CGTAAATCATATGTGACTTCTTCTCCA 59.293 37.037 1.90 0.00 37.14 3.86
257 261 7.707035 ACGTAAATCATATGTGACTTCTTCTCC 59.293 37.037 1.90 0.00 37.14 3.71
258 262 8.535592 CACGTAAATCATATGTGACTTCTTCTC 58.464 37.037 1.90 0.00 37.14 2.87
260 264 7.119997 GCACGTAAATCATATGTGACTTCTTC 58.880 38.462 11.03 0.00 37.14 2.87
262 266 6.106003 TGCACGTAAATCATATGTGACTTCT 58.894 36.000 11.03 0.00 37.14 2.85
263 267 6.344572 TGCACGTAAATCATATGTGACTTC 57.655 37.500 11.03 0.00 37.14 3.01
306 310 7.093992 GTCGGGTTATCATCATTTTTGGAAAA 58.906 34.615 0.00 0.00 0.00 2.29
309 313 4.642885 GGTCGGGTTATCATCATTTTTGGA 59.357 41.667 0.00 0.00 0.00 3.53
310 314 4.644685 AGGTCGGGTTATCATCATTTTTGG 59.355 41.667 0.00 0.00 0.00 3.28
311 315 5.356751 TGAGGTCGGGTTATCATCATTTTTG 59.643 40.000 0.00 0.00 0.00 2.44
312 316 5.505780 TGAGGTCGGGTTATCATCATTTTT 58.494 37.500 0.00 0.00 0.00 1.94
341 349 4.694760 AATAGGATAGCTGTGTGCATCA 57.305 40.909 0.00 0.00 45.94 3.07
346 354 8.147058 ACTCTATGAAAATAGGATAGCTGTGTG 58.853 37.037 0.00 0.00 0.00 3.82
381 389 8.217799 AGGGCTTATTTGTGTATTTCTAGCATA 58.782 33.333 0.00 0.00 0.00 3.14
429 439 7.134815 CACAGTATATGCAACTCTATTTTGGC 58.865 38.462 0.00 0.00 0.00 4.52
452 462 0.323957 AAGGCCCTCCGTTTAGACAC 59.676 55.000 0.00 0.00 37.47 3.67
458 468 3.945640 ATACATAAAGGCCCTCCGTTT 57.054 42.857 0.00 0.00 35.64 3.60
461 471 3.403038 CTCAATACATAAAGGCCCTCCG 58.597 50.000 0.00 0.00 37.47 4.63
462 472 3.394606 TCCTCAATACATAAAGGCCCTCC 59.605 47.826 0.00 0.00 0.00 4.30
468 478 6.430451 GCACGATTTCCTCAATACATAAAGG 58.570 40.000 0.00 0.00 0.00 3.11
566 592 8.889717 AGTAGTCGAAAATCTGACTTTTGAAAA 58.110 29.630 3.30 0.00 42.61 2.29
567 593 8.335356 CAGTAGTCGAAAATCTGACTTTTGAAA 58.665 33.333 3.30 0.00 42.61 2.69
596 622 2.284417 CCGGCGATTTCTTAGCTACAAC 59.716 50.000 9.30 0.00 0.00 3.32
599 625 1.859080 CACCGGCGATTTCTTAGCTAC 59.141 52.381 9.30 0.00 0.00 3.58
600 626 1.479323 ACACCGGCGATTTCTTAGCTA 59.521 47.619 9.30 0.00 0.00 3.32
601 627 0.249398 ACACCGGCGATTTCTTAGCT 59.751 50.000 9.30 0.00 0.00 3.32
624 650 1.157870 ACCGTTGCCGTTTCTCACTG 61.158 55.000 0.00 0.00 0.00 3.66
665 691 0.391927 TGATTCCGCCCCGTTTACAG 60.392 55.000 0.00 0.00 0.00 2.74
793 824 4.498345 GGAGCAGGAATACTACAACGAGAG 60.498 50.000 0.00 0.00 0.00 3.20
997 1030 1.993391 GGTCCTTGGACCCCATCGA 60.993 63.158 24.48 0.00 39.27 3.59
1180 1221 3.045601 AGCATATGCATAGTTCCCGAC 57.954 47.619 28.62 0.00 45.16 4.79
1208 1249 1.139654 CAGATCAAATGGCGGAGAGGA 59.860 52.381 0.00 0.00 0.00 3.71
1291 1332 4.142902 ACTCAAATGAAGCACGTAATTCCG 60.143 41.667 8.87 0.00 0.00 4.30
1348 1389 4.413087 ACAAACGACAGTACGAGATCATC 58.587 43.478 0.00 0.00 37.03 2.92
1386 1427 1.215647 GCTACTCACCGGACAGTGG 59.784 63.158 9.46 12.48 38.34 4.00
1495 1536 9.640963 CTTATATTTAGAAACGGAGGGAGTATG 57.359 37.037 0.00 0.00 0.00 2.39
1570 1613 0.406750 TGACTACTCCCTCCGTTCCA 59.593 55.000 0.00 0.00 0.00 3.53
1642 1685 8.850156 ACAATTACAATATCCTATTTGAGGCAC 58.150 33.333 0.00 0.00 46.25 5.01
1673 1716 6.507023 ACAGAAATTGCCTGTACTTCAAAAG 58.493 36.000 10.88 0.00 42.51 2.27
1726 1769 1.154150 GGCGCAATTCAGTGCAGAC 60.154 57.895 10.83 0.00 46.43 3.51
1743 1786 4.758251 TGCATCCACCACTCGCGG 62.758 66.667 6.13 0.00 0.00 6.46
1747 1790 4.265073 ACTTAAATCTGCATCCACCACTC 58.735 43.478 0.00 0.00 0.00 3.51
1816 1859 7.171508 CCCAAAAGGCAAAAGAGAAGAATAAAC 59.828 37.037 0.00 0.00 0.00 2.01
1852 1895 1.888512 ACGGCAAGCACATTTCAGAAT 59.111 42.857 0.00 0.00 0.00 2.40
1926 1969 3.963383 AAGTGCCAAGTAAAGAACACG 57.037 42.857 0.00 0.00 33.36 4.49
2016 2059 0.835276 CATCTGTGCCTCCATCTGGA 59.165 55.000 0.00 0.00 43.08 3.86
2119 2162 6.315393 GTGTCCGAAACAATATGAGGTTATGT 59.685 38.462 0.00 0.00 40.31 2.29
2139 2182 3.065925 GCTTTCATAATGGCTGAGTGTCC 59.934 47.826 0.00 0.00 0.00 4.02
2233 2276 2.957680 TGCAGATCCAGAAAAACAAGCA 59.042 40.909 0.00 0.00 0.00 3.91
2296 2339 3.762407 AAATGTAAGCCCCAAAACACC 57.238 42.857 0.00 0.00 0.00 4.16
2327 2370 6.265196 ACTTTTGATGACCTAAGAAATGCACA 59.735 34.615 0.00 0.00 0.00 4.57
2449 2519 8.611654 TGAGGTCCAGTTTAAGTACATTTTAC 57.388 34.615 0.00 0.00 0.00 2.01
2456 2526 5.404667 CGAAGTTGAGGTCCAGTTTAAGTAC 59.595 44.000 0.00 0.00 0.00 2.73
2598 2669 9.289782 CCTCAAATTAAAGGGGAGAATACTATG 57.710 37.037 0.00 0.00 0.00 2.23
2626 2697 4.672587 ACAAGACTTCAGAAGTGTGCTA 57.327 40.909 21.00 0.00 43.03 3.49
2763 2834 2.235016 GGCAACCTAATGACCAACACA 58.765 47.619 0.00 0.00 0.00 3.72
2808 2879 1.431633 TGAGGTAGGGTCCAGAACTCA 59.568 52.381 6.01 6.01 0.00 3.41
2894 2973 5.947566 TCAATATATGGCCTGTGAATCATGG 59.052 40.000 3.32 1.73 0.00 3.66
2982 3061 7.958583 ACAGGATAGGATTATCACTGAACCTAT 59.041 37.037 0.00 0.00 41.48 2.57
3030 3431 4.512944 AGCACGCATGTTGAGATAATTAGG 59.487 41.667 0.00 0.00 0.00 2.69
3116 3517 6.037098 GGTAGAGGATTATCATGCGTACATC 58.963 44.000 0.00 0.00 32.87 3.06
3129 3530 4.136796 GCATGTTGCATGGTAGAGGATTA 58.863 43.478 10.59 0.00 44.26 1.75
3229 3630 2.766263 AGACGGATGCTAGTGGATCAAA 59.234 45.455 0.00 0.00 41.94 2.69
3371 3772 4.992381 ACTACGTGAGAAATTTCTGCAC 57.008 40.909 25.12 25.21 37.73 4.57
3454 3856 2.158841 GTCATTATTCGTGTGTTGCCGT 59.841 45.455 0.00 0.00 0.00 5.68
3476 3878 3.808466 TTTTTAGTGCACAACATGGCA 57.192 38.095 21.04 0.00 37.77 4.92
3531 3933 6.485313 ACGAAACATGGTTGTCAGAGAAATAA 59.515 34.615 0.00 0.00 34.06 1.40
3543 3945 5.607119 AGCTAGTAAACGAAACATGGTTG 57.393 39.130 0.00 0.00 0.00 3.77
3577 3979 1.219124 GGTTCTGAGCGGCTCATCA 59.781 57.895 30.90 18.63 39.92 3.07
3666 4068 8.747538 AATAACTTTTAGGGCGTTCTGATAAT 57.252 30.769 0.00 0.00 0.00 1.28
3748 4152 8.896744 CAGATCATCACACAAGGTACATAAAAT 58.103 33.333 0.00 0.00 0.00 1.82
3803 4209 0.241749 ATTGCACAACATGGCAGTCG 59.758 50.000 0.00 0.00 41.68 4.18
3824 4230 7.937649 AGAACACCATAAAAAGGTAAAGTGTC 58.062 34.615 0.00 0.00 37.23 3.67
3831 4237 9.720769 CTCTAGAAAGAACACCATAAAAAGGTA 57.279 33.333 0.00 0.00 37.23 3.08
3851 4257 6.780901 TCTCAGAGTAACAGTTTCCTCTAGA 58.219 40.000 12.50 12.28 33.13 2.43
3864 4270 4.757149 ACCAAGCACAATTCTCAGAGTAAC 59.243 41.667 0.00 0.00 0.00 2.50
3877 4283 6.319152 TGTTTTAGCTAGTAAACCAAGCACAA 59.681 34.615 15.26 0.00 38.75 3.33
3954 4381 4.717233 TGACTGCAGTGTCAAAAACAAT 57.283 36.364 27.27 0.00 43.08 2.71
4127 4554 7.119846 AGCTAAGATGTACAAACATTGAGAACC 59.880 37.037 0.00 0.00 46.49 3.62
4322 4778 9.228949 ACGGGTCAAGTACTACTGATTATATAG 57.771 37.037 0.00 0.00 0.00 1.31
4347 4803 7.386025 ACCTTGACAGAAAATAGTTTACCGTAC 59.614 37.037 0.00 0.00 0.00 3.67
4349 4805 6.293698 ACCTTGACAGAAAATAGTTTACCGT 58.706 36.000 0.00 0.00 0.00 4.83
4351 4807 8.161699 TGAACCTTGACAGAAAATAGTTTACC 57.838 34.615 0.00 0.00 0.00 2.85
4389 4845 9.823647 AATCACCAGAAATGTATAGTACAGAAG 57.176 33.333 0.00 0.00 42.77 2.85
4390 4846 9.817809 GAATCACCAGAAATGTATAGTACAGAA 57.182 33.333 0.00 0.00 42.77 3.02
4437 4895 6.925165 AGTCAAACACCAAAATAGAAATGCTG 59.075 34.615 0.00 0.00 0.00 4.41
4488 4946 8.624776 GCTGCTGATTTTCAGTATTTAACCTAT 58.375 33.333 6.40 0.00 45.94 2.57
4604 5088 7.643371 CGTTGTATGCTGATAATTTATTGCACA 59.357 33.333 15.41 10.12 33.29 4.57
4672 5186 7.402054 TGTCTAACAGGTCACAATATTCCATT 58.598 34.615 0.00 0.00 0.00 3.16
5208 5837 3.565902 CCACTGAGTTTCCCAAGAACTTC 59.434 47.826 0.00 0.00 37.46 3.01
5327 5966 7.370383 TCTACAGAACCTTGAAATCAATTTGC 58.630 34.615 0.00 0.00 35.02 3.68
5408 6051 3.725490 GACACCGGACTTCTTAAGTGTT 58.275 45.455 9.46 0.00 43.03 3.32
5417 6060 1.219522 CCAACACGACACCGGACTTC 61.220 60.000 9.46 0.00 40.78 3.01
5471 6114 0.752054 CCCATGTGCGCCCAAATATT 59.248 50.000 4.18 0.00 0.00 1.28
5717 6367 6.155221 TGACATAAACAGTAAGATGAGAGGCT 59.845 38.462 0.00 0.00 0.00 4.58
5720 6370 6.983307 CCCTGACATAAACAGTAAGATGAGAG 59.017 42.308 0.00 0.00 34.04 3.20
5924 6581 5.047943 ACAGCACGCCTAATATAACCTAGAG 60.048 44.000 0.00 0.00 0.00 2.43
5926 6583 5.047943 AGACAGCACGCCTAATATAACCTAG 60.048 44.000 0.00 0.00 0.00 3.02
6181 6839 6.750148 AGCTATGGGAAGTATAGAAAAGTCG 58.250 40.000 0.00 0.00 31.26 4.18
6276 6934 9.507280 CATGAACACAAACATCAGATAAATACC 57.493 33.333 0.00 0.00 0.00 2.73
6302 6960 4.216257 TGTTCTTCAAGCCTGAAAGCATAC 59.784 41.667 0.00 0.00 41.05 2.39
6303 6961 4.397420 TGTTCTTCAAGCCTGAAAGCATA 58.603 39.130 0.00 0.00 41.05 3.14
6304 6962 3.225104 TGTTCTTCAAGCCTGAAAGCAT 58.775 40.909 0.00 0.00 41.05 3.79
6305 6963 2.653726 TGTTCTTCAAGCCTGAAAGCA 58.346 42.857 0.00 0.00 41.05 3.91
6398 7056 2.857744 CGGCGTAGGGGAGATGTCC 61.858 68.421 0.00 0.00 43.05 4.02
6494 7152 3.432588 ACGTCTGTCTCCTCGGCG 61.433 66.667 0.00 0.00 0.00 6.46
6506 7164 0.678366 ACTCGATGGAGCTCACGTCT 60.678 55.000 17.19 5.11 44.48 4.18
6512 7170 1.646189 GGTTGAACTCGATGGAGCTC 58.354 55.000 4.71 4.71 44.48 4.09
6545 7203 0.911769 ATCATTGGGAAGGCGAGTCA 59.088 50.000 0.00 0.00 0.00 3.41
6594 7252 7.272037 TGAAAGCGTTTTAGAGGAGAAAAAT 57.728 32.000 0.00 0.00 0.00 1.82
6595 7253 6.238648 CCTGAAAGCGTTTTAGAGGAGAAAAA 60.239 38.462 13.95 0.00 31.76 1.94
6603 7261 2.427506 AGGCCTGAAAGCGTTTTAGAG 58.572 47.619 3.11 0.00 0.00 2.43
6755 7413 7.872113 ATAAATTTCACCAGCTTCTTCTAGG 57.128 36.000 0.00 0.00 0.00 3.02
6793 7452 9.225436 GATAATGATCTTCCTAATTTCCCACTC 57.775 37.037 0.00 0.00 0.00 3.51
6813 7472 1.200103 CAGCTGCGACGCGATAATG 59.800 57.895 15.93 5.69 34.40 1.90
6828 7487 1.455773 GGACCAAATAGCCCCCAGC 60.456 63.158 0.00 0.00 44.25 4.85
6921 7581 2.642254 GCCAATGGCTGCTGCTTCA 61.642 57.895 18.47 6.27 46.69 3.02
6991 7652 2.731976 GAGAGCAAAGTTACAGTCCACG 59.268 50.000 0.00 0.00 0.00 4.94
7006 7667 4.142609 ACAACTTTCTTGACAGAGAGCA 57.857 40.909 0.00 0.00 35.08 4.26
7007 7668 4.572389 TCAACAACTTTCTTGACAGAGAGC 59.428 41.667 0.00 0.00 35.08 4.09
7008 7669 6.857777 ATCAACAACTTTCTTGACAGAGAG 57.142 37.500 0.00 0.00 37.30 3.20
7009 7670 6.038603 CCAATCAACAACTTTCTTGACAGAGA 59.961 38.462 0.00 0.00 0.00 3.10
7010 7671 6.038603 TCCAATCAACAACTTTCTTGACAGAG 59.961 38.462 0.00 0.00 0.00 3.35
7011 7672 5.885352 TCCAATCAACAACTTTCTTGACAGA 59.115 36.000 0.00 0.00 0.00 3.41
7012 7673 6.135290 TCCAATCAACAACTTTCTTGACAG 57.865 37.500 0.00 0.00 0.00 3.51
7013 7674 6.320926 TGATCCAATCAACAACTTTCTTGACA 59.679 34.615 0.00 0.00 36.11 3.58
7014 7675 6.738114 TGATCCAATCAACAACTTTCTTGAC 58.262 36.000 0.00 0.00 36.11 3.18
7015 7676 6.957920 TGATCCAATCAACAACTTTCTTGA 57.042 33.333 0.00 0.00 36.11 3.02
7016 7677 6.090358 GCATGATCCAATCAACAACTTTCTTG 59.910 38.462 0.00 0.00 43.50 3.02
7017 7678 6.014840 AGCATGATCCAATCAACAACTTTCTT 60.015 34.615 0.00 0.00 43.50 2.52
7018 7679 5.479375 AGCATGATCCAATCAACAACTTTCT 59.521 36.000 0.00 0.00 43.50 2.52
7019 7680 5.717119 AGCATGATCCAATCAACAACTTTC 58.283 37.500 0.00 0.00 43.50 2.62
7020 7681 5.733620 AGCATGATCCAATCAACAACTTT 57.266 34.783 0.00 0.00 43.50 2.66
7021 7682 5.733620 AAGCATGATCCAATCAACAACTT 57.266 34.783 0.00 0.00 43.50 2.66
7022 7683 5.475719 CAAAGCATGATCCAATCAACAACT 58.524 37.500 0.00 0.00 43.50 3.16
7023 7684 4.092383 GCAAAGCATGATCCAATCAACAAC 59.908 41.667 0.00 0.00 43.50 3.32
7024 7685 4.020928 AGCAAAGCATGATCCAATCAACAA 60.021 37.500 0.00 0.00 43.50 2.83
7025 7686 3.512329 AGCAAAGCATGATCCAATCAACA 59.488 39.130 0.00 0.00 43.50 3.33
7026 7687 4.110482 GAGCAAAGCATGATCCAATCAAC 58.890 43.478 0.00 0.00 43.50 3.18
7027 7688 4.021229 AGAGCAAAGCATGATCCAATCAA 58.979 39.130 0.00 0.00 45.73 2.57
7028 7689 3.628008 AGAGCAAAGCATGATCCAATCA 58.372 40.909 0.00 0.00 45.73 2.57
7029 7690 3.884091 AGAGAGCAAAGCATGATCCAATC 59.116 43.478 0.00 0.00 45.73 2.67
7030 7691 3.884091 GAGAGAGCAAAGCATGATCCAAT 59.116 43.478 0.00 0.00 45.73 3.16
7031 7692 3.054582 AGAGAGAGCAAAGCATGATCCAA 60.055 43.478 0.00 0.00 45.73 3.53
7032 7693 2.504585 AGAGAGAGCAAAGCATGATCCA 59.495 45.455 0.00 0.00 45.73 3.41
7033 7694 3.132925 GAGAGAGAGCAAAGCATGATCC 58.867 50.000 0.00 0.00 45.73 3.36
7034 7695 3.794717 TGAGAGAGAGCAAAGCATGATC 58.205 45.455 0.00 0.01 44.92 2.92
7035 7696 3.908643 TGAGAGAGAGCAAAGCATGAT 57.091 42.857 0.00 0.00 0.00 2.45
7036 7697 3.260128 TCTTGAGAGAGAGCAAAGCATGA 59.740 43.478 0.00 0.00 0.00 3.07
7037 7698 3.597255 TCTTGAGAGAGAGCAAAGCATG 58.403 45.455 0.00 0.00 0.00 4.06
7038 7699 3.977134 TCTTGAGAGAGAGCAAAGCAT 57.023 42.857 0.00 0.00 0.00 3.79
7039 7700 3.758755 TTCTTGAGAGAGAGCAAAGCA 57.241 42.857 0.00 0.00 32.44 3.91
7040 7701 4.064388 ACTTTCTTGAGAGAGAGCAAAGC 58.936 43.478 5.65 0.00 37.58 3.51
7041 7702 5.526846 ACAACTTTCTTGAGAGAGAGCAAAG 59.473 40.000 5.65 0.00 37.58 2.77
7042 7703 5.431765 ACAACTTTCTTGAGAGAGAGCAAA 58.568 37.500 5.65 0.00 37.58 3.68
7043 7704 5.028549 ACAACTTTCTTGAGAGAGAGCAA 57.971 39.130 5.65 0.00 37.58 3.91
7044 7705 4.679373 ACAACTTTCTTGAGAGAGAGCA 57.321 40.909 5.65 0.00 37.58 4.26
7045 7706 5.053145 TCAACAACTTTCTTGAGAGAGAGC 58.947 41.667 5.65 0.00 37.58 4.09
7046 7707 7.307870 CCAATCAACAACTTTCTTGAGAGAGAG 60.308 40.741 5.65 0.00 39.42 3.20
7047 7708 6.484643 CCAATCAACAACTTTCTTGAGAGAGA 59.515 38.462 5.65 0.00 32.44 3.10
7048 7709 6.484643 TCCAATCAACAACTTTCTTGAGAGAG 59.515 38.462 0.00 0.00 32.44 3.20
7049 7710 6.356556 TCCAATCAACAACTTTCTTGAGAGA 58.643 36.000 0.00 0.00 30.04 3.10
7050 7711 6.624352 TCCAATCAACAACTTTCTTGAGAG 57.376 37.500 0.00 0.00 30.04 3.20
7051 7712 6.772233 TGATCCAATCAACAACTTTCTTGAGA 59.228 34.615 0.00 0.00 36.11 3.27
7052 7713 6.973843 TGATCCAATCAACAACTTTCTTGAG 58.026 36.000 0.00 0.00 36.11 3.02
7053 7714 6.957920 TGATCCAATCAACAACTTTCTTGA 57.042 33.333 0.00 0.00 36.11 3.02
7054 7715 6.090358 GCATGATCCAATCAACAACTTTCTTG 59.910 38.462 0.00 0.00 43.50 3.02
7055 7716 6.014840 AGCATGATCCAATCAACAACTTTCTT 60.015 34.615 0.00 0.00 43.50 2.52
7056 7717 5.479375 AGCATGATCCAATCAACAACTTTCT 59.521 36.000 0.00 0.00 43.50 2.52
7057 7718 5.717119 AGCATGATCCAATCAACAACTTTC 58.283 37.500 0.00 0.00 43.50 2.62
7058 7719 5.733620 AGCATGATCCAATCAACAACTTT 57.266 34.783 0.00 0.00 43.50 2.66
7059 7720 5.733620 AAGCATGATCCAATCAACAACTT 57.266 34.783 0.00 0.00 43.50 2.66
7060 7721 5.475719 CAAAGCATGATCCAATCAACAACT 58.524 37.500 0.00 0.00 43.50 3.16
7061 7722 4.092383 GCAAAGCATGATCCAATCAACAAC 59.908 41.667 0.00 0.00 43.50 3.32
7062 7723 4.020928 AGCAAAGCATGATCCAATCAACAA 60.021 37.500 0.00 0.00 43.50 2.83
7063 7724 3.512329 AGCAAAGCATGATCCAATCAACA 59.488 39.130 0.00 0.00 43.50 3.33
7064 7725 4.110482 GAGCAAAGCATGATCCAATCAAC 58.890 43.478 0.00 0.00 43.50 3.18
7065 7726 4.021229 AGAGCAAAGCATGATCCAATCAA 58.979 39.130 0.00 0.00 45.73 2.57
7066 7727 3.628008 AGAGCAAAGCATGATCCAATCA 58.372 40.909 0.00 0.00 45.73 2.57
7067 7728 3.884091 AGAGAGCAAAGCATGATCCAATC 59.116 43.478 0.00 0.00 45.73 2.67
7068 7729 3.884091 GAGAGAGCAAAGCATGATCCAAT 59.116 43.478 0.00 0.00 45.73 3.16
7069 7730 3.054582 AGAGAGAGCAAAGCATGATCCAA 60.055 43.478 0.00 0.00 45.73 3.53
7070 7731 2.504585 AGAGAGAGCAAAGCATGATCCA 59.495 45.455 0.00 0.00 45.73 3.41
7071 7732 3.132925 GAGAGAGAGCAAAGCATGATCC 58.867 50.000 0.00 0.00 45.73 3.36
7072 7733 3.794717 TGAGAGAGAGCAAAGCATGATC 58.205 45.455 0.00 0.01 44.92 2.92
7073 7734 3.908643 TGAGAGAGAGCAAAGCATGAT 57.091 42.857 0.00 0.00 0.00 2.45
7074 7735 3.260128 TCTTGAGAGAGAGCAAAGCATGA 59.740 43.478 0.00 0.00 0.00 3.07
7075 7736 3.597255 TCTTGAGAGAGAGCAAAGCATG 58.403 45.455 0.00 0.00 0.00 4.06
7076 7737 3.977134 TCTTGAGAGAGAGCAAAGCAT 57.023 42.857 0.00 0.00 0.00 3.79
7077 7738 3.758755 TTCTTGAGAGAGAGCAAAGCA 57.241 42.857 0.00 0.00 32.44 3.91
7078 7739 4.064388 ACTTTCTTGAGAGAGAGCAAAGC 58.936 43.478 5.65 0.00 37.58 3.51
7079 7740 5.526846 ACAACTTTCTTGAGAGAGAGCAAAG 59.473 40.000 5.65 0.00 37.58 2.77
7080 7741 5.431765 ACAACTTTCTTGAGAGAGAGCAAA 58.568 37.500 5.65 0.00 37.58 3.68
7081 7742 5.028549 ACAACTTTCTTGAGAGAGAGCAA 57.971 39.130 5.65 0.00 37.58 3.91
7082 7743 4.679373 ACAACTTTCTTGAGAGAGAGCA 57.321 40.909 5.65 0.00 37.58 4.26
7095 7756 6.680810 TGTCATGATCCAATCAACAACTTTC 58.319 36.000 0.00 0.00 43.50 2.62
7177 7842 1.514657 CCCACGCAAACATCGCATG 60.515 57.895 0.00 0.00 0.00 4.06
7287 8440 7.308830 GCCTTGAGCTTTTCCATTATATGGTAG 60.309 40.741 5.66 4.03 44.41 3.18
7292 8445 5.302823 GTGGCCTTGAGCTTTTCCATTATAT 59.697 40.000 3.32 0.00 43.05 0.86
7293 8446 4.644685 GTGGCCTTGAGCTTTTCCATTATA 59.355 41.667 3.32 0.00 43.05 0.98
7315 8468 9.832445 AAATCCATTTAGTATGTTCATCTACGT 57.168 29.630 0.00 0.00 0.00 3.57
7332 8502 2.494870 GAGCAGGAGCACAAATCCATTT 59.505 45.455 0.00 0.00 45.49 2.32
7358 8528 2.290960 ACTGCATTTAGGAGGTGGTTCC 60.291 50.000 0.00 0.00 40.51 3.62
7381 8551 2.421424 GACACCAAACTGATCCTGATGC 59.579 50.000 0.00 0.00 0.00 3.91
7392 8562 0.936297 GTACGCGTCGACACCAAACT 60.936 55.000 18.63 0.00 0.00 2.66
7400 8570 0.723981 AGTAGGAAGTACGCGTCGAC 59.276 55.000 18.63 10.13 36.66 4.20
7421 8591 1.067565 TGCAACTAGTCTCTCGCCTTG 60.068 52.381 0.00 0.00 0.00 3.61
7508 8680 1.002087 AGTACCCAACTTTCAGCCTCG 59.998 52.381 0.00 0.00 33.35 4.63
7527 8699 3.407424 TCTGTCCACACCAATGAGAAG 57.593 47.619 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.