Multiple sequence alignment - TraesCS4D01G208500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G208500 chr4D 100.000 5496 0 0 1 5496 359126787 359121292 0.000000e+00 10150.0
1 TraesCS4D01G208500 chr4D 80.392 102 15 5 3458 3557 347237741 347237643 7.640000e-09 73.1
2 TraesCS4D01G208500 chr4B 95.006 2443 64 19 1302 3719 443454424 443452015 0.000000e+00 3783.0
3 TraesCS4D01G208500 chr4B 94.318 1232 47 9 3775 5005 443452017 443450808 0.000000e+00 1866.0
4 TraesCS4D01G208500 chr4B 96.628 682 12 2 471 1141 443455104 443454423 0.000000e+00 1122.0
5 TraesCS4D01G208500 chr4B 93.725 494 25 5 5003 5496 443450548 443450061 0.000000e+00 736.0
6 TraesCS4D01G208500 chr4B 82.571 350 19 26 36 376 443455453 443455137 2.520000e-68 270.0
7 TraesCS4D01G208500 chr4A 89.522 2176 145 54 3343 5496 106341091 106343205 0.000000e+00 2678.0
8 TraesCS4D01G208500 chr4A 95.994 624 21 4 1784 2404 106339846 106340468 0.000000e+00 1011.0
9 TraesCS4D01G208500 chr4A 87.291 716 52 20 441 1125 106338719 106339426 0.000000e+00 782.0
10 TraesCS4D01G208500 chr4A 94.928 414 15 1 1306 1713 106339420 106339833 1.290000e-180 643.0
11 TraesCS4D01G208500 chr4A 86.431 538 26 16 2359 2859 106340469 106340996 3.740000e-151 545.0
12 TraesCS4D01G208500 chr4A 82.121 481 40 17 435 897 106191124 106191576 2.420000e-98 370.0
13 TraesCS4D01G208500 chr6D 96.739 184 2 4 1140 1320 392896975 392897157 2.490000e-78 303.0
14 TraesCS4D01G208500 chr6D 97.143 175 4 1 1133 1306 206560267 206560441 1.500000e-75 294.0
15 TraesCS4D01G208500 chr5A 98.817 169 1 1 1140 1307 382566802 382566634 3.220000e-77 300.0
16 TraesCS4D01G208500 chr5A 97.688 173 1 3 1135 1304 290391690 290391862 1.500000e-75 294.0
17 TraesCS4D01G208500 chr5A 78.899 109 14 6 3414 3519 275114921 275114819 1.280000e-06 65.8
18 TraesCS4D01G208500 chr5A 100.000 30 0 0 3609 3638 659169335 659169364 7.690000e-04 56.5
19 TraesCS4D01G208500 chr7D 97.688 173 2 2 1136 1307 459392091 459391920 4.160000e-76 296.0
20 TraesCS4D01G208500 chr7D 81.369 263 40 7 3363 3620 94403066 94403324 7.220000e-49 206.0
21 TraesCS4D01G208500 chr7D 77.586 116 21 3 3409 3523 538667198 538667087 1.280000e-06 65.8
22 TraesCS4D01G208500 chr1D 98.225 169 1 2 1140 1307 238940380 238940213 1.500000e-75 294.0
23 TraesCS4D01G208500 chr5D 95.187 187 6 3 1136 1321 331919529 331919345 5.380000e-75 292.0
24 TraesCS4D01G208500 chr3A 96.610 177 5 1 1132 1307 744921119 744920943 5.380000e-75 292.0
25 TraesCS4D01G208500 chrUn 93.750 192 7 4 1117 1306 130470699 130470887 3.240000e-72 283.0
26 TraesCS4D01G208500 chrUn 85.333 75 7 4 268 340 305447895 305447823 2.120000e-09 75.0
27 TraesCS4D01G208500 chrUn 85.333 75 7 4 268 340 354236208 354236136 2.120000e-09 75.0
28 TraesCS4D01G208500 chrUn 100.000 30 0 0 3609 3638 100259306 100259335 7.690000e-04 56.5
29 TraesCS4D01G208500 chr6B 100.000 29 0 0 3610 3638 36144888 36144916 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G208500 chr4D 359121292 359126787 5495 True 10150.0 10150 100.0000 1 5496 1 chr4D.!!$R2 5495
1 TraesCS4D01G208500 chr4B 443450061 443455453 5392 True 1555.4 3783 92.4496 36 5496 5 chr4B.!!$R1 5460
2 TraesCS4D01G208500 chr4A 106338719 106343205 4486 False 1131.8 2678 90.8332 441 5496 5 chr4A.!!$F2 5055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 412 0.176680 ATGTGCTCTCCCTTACAGCG 59.823 55.0 0.00 0.0 35.81 5.18 F
402 414 0.179124 GTGCTCTCCCTTACAGCGAG 60.179 60.0 0.00 0.0 35.81 5.03 F
431 443 0.319728 CTCGAGCACCCCAGGATATG 59.680 60.0 0.00 0.0 0.00 1.78 F
432 444 0.398522 TCGAGCACCCCAGGATATGT 60.399 55.0 0.00 0.0 0.00 2.29 F
433 445 0.469917 CGAGCACCCCAGGATATGTT 59.530 55.0 0.00 0.0 0.00 2.71 F
828 893 0.813821 CTGAGACTCGGATGCTGTCA 59.186 55.0 5.24 0.0 33.56 3.58 F
2707 2855 0.450983 GCAGAGAACATGCAAGCTCC 59.549 55.0 0.00 0.0 43.31 4.70 F
3427 3589 0.108138 GCCATGCGTAAGAGGTCACT 60.108 55.0 0.00 0.0 43.02 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1538 0.107165 GTATTGCCCCTGTCCCTGAC 60.107 60.000 0.00 0.00 0.00 3.51 R
1463 1540 1.153168 CGTATTGCCCCTGTCCCTG 60.153 63.158 0.00 0.00 0.00 4.45 R
1465 1542 2.192175 CCGTATTGCCCCTGTCCC 59.808 66.667 0.00 0.00 0.00 4.46 R
2178 2261 4.209288 CACGATGTCTTCACGAAAACTCTT 59.791 41.667 0.00 0.00 0.00 2.85 R
2398 2481 5.668135 ATCCCCTCATGAAATGGATAACA 57.332 39.130 15.26 0.00 46.73 2.41 R
2765 2925 0.322975 AGCTATAGATGCGCAAGGGG 59.677 55.000 17.11 4.04 38.28 4.79 R
3680 3847 0.325933 CACACTGAGGGCATCTCCAA 59.674 55.000 0.00 0.00 41.76 3.53 R
5097 5545 0.649475 CTTGGAAGCATTCTCGCTCG 59.351 55.000 0.00 0.00 46.56 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.017752 GCCTTCAGCATCGCTAACC 58.982 57.895 0.00 0.00 42.97 2.85
26 27 0.744414 GCCTTCAGCATCGCTAACCA 60.744 55.000 0.00 0.00 42.97 3.67
27 28 1.009829 CCTTCAGCATCGCTAACCAC 58.990 55.000 0.00 0.00 36.40 4.16
28 29 1.406069 CCTTCAGCATCGCTAACCACT 60.406 52.381 0.00 0.00 36.40 4.00
29 30 1.662629 CTTCAGCATCGCTAACCACTG 59.337 52.381 0.00 0.00 36.40 3.66
30 31 0.740868 TCAGCATCGCTAACCACTGC 60.741 55.000 0.00 0.00 36.40 4.40
38 39 4.752879 TAACCACTGCGCTCGGCC 62.753 66.667 9.73 0.00 42.61 6.13
55 56 1.017177 GCCCGAGTTCACGTGCAATA 61.017 55.000 11.67 0.00 36.74 1.90
90 91 6.127703 TGACCTATTAGAAGTGAAAGAGTCGG 60.128 42.308 0.00 0.00 0.00 4.79
109 110 3.500680 TCGGCTTTTACACATGTTCCTTC 59.499 43.478 0.00 0.00 0.00 3.46
110 111 3.502211 CGGCTTTTACACATGTTCCTTCT 59.498 43.478 0.00 0.00 0.00 2.85
144 145 9.150348 TCTTTGATGTTTTTCTTTCTTGGTTTC 57.850 29.630 0.00 0.00 0.00 2.78
146 147 6.940739 TGATGTTTTTCTTTCTTGGTTTCCA 58.059 32.000 0.00 0.00 0.00 3.53
228 237 5.772825 TCTCTTCTCCATTTGTTGTTTGG 57.227 39.130 0.00 0.00 0.00 3.28
235 244 5.894393 TCTCCATTTGTTGTTTGGGTTTCTA 59.106 36.000 0.00 0.00 0.00 2.10
240 249 8.341903 CCATTTGTTGTTTGGGTTTCTATTTTC 58.658 33.333 0.00 0.00 0.00 2.29
250 259 8.491045 TTGGGTTTCTATTTTCTTCTCCATTT 57.509 30.769 0.00 0.00 0.00 2.32
253 262 9.208022 GGGTTTCTATTTTCTTCTCCATTTTTG 57.792 33.333 0.00 0.00 0.00 2.44
254 263 9.208022 GGTTTCTATTTTCTTCTCCATTTTTGG 57.792 33.333 0.00 0.00 0.00 3.28
257 266 9.981114 TTCTATTTTCTTCTCCATTTTTGGTTC 57.019 29.630 0.00 0.00 0.00 3.62
259 268 9.631452 CTATTTTCTTCTCCATTTTTGGTTCTC 57.369 33.333 0.00 0.00 0.00 2.87
260 269 7.660030 TTTTCTTCTCCATTTTTGGTTCTCT 57.340 32.000 0.00 0.00 0.00 3.10
262 271 7.660030 TTCTTCTCCATTTTTGGTTCTCTTT 57.340 32.000 0.00 0.00 0.00 2.52
263 272 7.660030 TCTTCTCCATTTTTGGTTCTCTTTT 57.340 32.000 0.00 0.00 0.00 2.27
264 273 8.078060 TCTTCTCCATTTTTGGTTCTCTTTTT 57.922 30.769 0.00 0.00 0.00 1.94
265 274 7.981225 TCTTCTCCATTTTTGGTTCTCTTTTTG 59.019 33.333 0.00 0.00 0.00 2.44
266 275 6.581712 TCTCCATTTTTGGTTCTCTTTTTGG 58.418 36.000 0.00 0.00 0.00 3.28
267 276 6.156083 TCTCCATTTTTGGTTCTCTTTTTGGT 59.844 34.615 0.00 0.00 0.00 3.67
268 277 6.716284 TCCATTTTTGGTTCTCTTTTTGGTT 58.284 32.000 0.00 0.00 0.00 3.67
269 278 7.171653 TCCATTTTTGGTTCTCTTTTTGGTTT 58.828 30.769 0.00 0.00 0.00 3.27
270 279 7.667635 TCCATTTTTGGTTCTCTTTTTGGTTTT 59.332 29.630 0.00 0.00 0.00 2.43
271 280 8.303156 CCATTTTTGGTTCTCTTTTTGGTTTTT 58.697 29.630 0.00 0.00 0.00 1.94
393 405 2.693864 CCCCCATGTGCTCTCCCT 60.694 66.667 0.00 0.00 0.00 4.20
394 406 2.311854 CCCCCATGTGCTCTCCCTT 61.312 63.158 0.00 0.00 0.00 3.95
395 407 0.988145 CCCCCATGTGCTCTCCCTTA 60.988 60.000 0.00 0.00 0.00 2.69
396 408 0.181350 CCCCATGTGCTCTCCCTTAC 59.819 60.000 0.00 0.00 0.00 2.34
397 409 0.911769 CCCATGTGCTCTCCCTTACA 59.088 55.000 0.00 0.00 0.00 2.41
398 410 1.134280 CCCATGTGCTCTCCCTTACAG 60.134 57.143 0.00 0.00 0.00 2.74
399 411 1.661341 CATGTGCTCTCCCTTACAGC 58.339 55.000 0.00 0.00 0.00 4.40
400 412 0.176680 ATGTGCTCTCCCTTACAGCG 59.823 55.000 0.00 0.00 35.81 5.18
401 413 0.898326 TGTGCTCTCCCTTACAGCGA 60.898 55.000 0.00 0.00 35.81 4.93
402 414 0.179124 GTGCTCTCCCTTACAGCGAG 60.179 60.000 0.00 0.00 35.81 5.03
403 415 0.323451 TGCTCTCCCTTACAGCGAGA 60.323 55.000 0.00 0.00 35.81 4.04
404 416 0.818296 GCTCTCCCTTACAGCGAGAA 59.182 55.000 0.00 0.00 32.45 2.87
405 417 1.204941 GCTCTCCCTTACAGCGAGAAA 59.795 52.381 0.00 0.00 32.45 2.52
406 418 2.159028 GCTCTCCCTTACAGCGAGAAAT 60.159 50.000 0.00 0.00 32.45 2.17
407 419 3.068307 GCTCTCCCTTACAGCGAGAAATA 59.932 47.826 0.00 0.00 32.45 1.40
408 420 4.794655 GCTCTCCCTTACAGCGAGAAATAG 60.795 50.000 0.00 0.00 32.45 1.73
409 421 4.279145 TCTCCCTTACAGCGAGAAATAGT 58.721 43.478 0.00 0.00 29.82 2.12
425 437 0.752009 TAGTAGCTCGAGCACCCCAG 60.752 60.000 36.87 0.00 45.16 4.45
426 438 2.759973 TAGCTCGAGCACCCCAGG 60.760 66.667 36.87 0.00 45.16 4.45
427 439 3.296842 TAGCTCGAGCACCCCAGGA 62.297 63.158 36.87 10.21 45.16 3.86
428 440 2.589610 TAGCTCGAGCACCCCAGGAT 62.590 60.000 36.87 16.87 45.16 3.24
429 441 2.134287 GCTCGAGCACCCCAGGATA 61.134 63.158 31.91 0.00 41.59 2.59
430 442 1.476007 GCTCGAGCACCCCAGGATAT 61.476 60.000 31.91 0.00 41.59 1.63
431 443 0.319728 CTCGAGCACCCCAGGATATG 59.680 60.000 0.00 0.00 0.00 1.78
432 444 0.398522 TCGAGCACCCCAGGATATGT 60.399 55.000 0.00 0.00 0.00 2.29
433 445 0.469917 CGAGCACCCCAGGATATGTT 59.530 55.000 0.00 0.00 0.00 2.71
434 446 1.811558 CGAGCACCCCAGGATATGTTG 60.812 57.143 0.00 0.00 0.00 3.33
435 447 1.212935 GAGCACCCCAGGATATGTTGT 59.787 52.381 0.00 0.00 0.00 3.32
436 448 1.640670 AGCACCCCAGGATATGTTGTT 59.359 47.619 0.00 0.00 0.00 2.83
437 449 2.024414 GCACCCCAGGATATGTTGTTC 58.976 52.381 0.00 0.00 0.00 3.18
438 450 2.357154 GCACCCCAGGATATGTTGTTCT 60.357 50.000 0.00 0.00 0.00 3.01
439 451 3.118038 GCACCCCAGGATATGTTGTTCTA 60.118 47.826 0.00 0.00 0.00 2.10
440 452 4.446311 GCACCCCAGGATATGTTGTTCTAT 60.446 45.833 0.00 0.00 0.00 1.98
441 453 5.308825 CACCCCAGGATATGTTGTTCTATC 58.691 45.833 0.00 0.00 0.00 2.08
442 454 4.975147 ACCCCAGGATATGTTGTTCTATCA 59.025 41.667 0.00 0.00 0.00 2.15
443 455 5.163195 ACCCCAGGATATGTTGTTCTATCAC 60.163 44.000 0.00 0.00 0.00 3.06
444 456 5.163205 CCCCAGGATATGTTGTTCTATCACA 60.163 44.000 0.00 0.00 0.00 3.58
445 457 5.994054 CCCAGGATATGTTGTTCTATCACAG 59.006 44.000 0.00 0.00 0.00 3.66
446 458 6.183361 CCCAGGATATGTTGTTCTATCACAGA 60.183 42.308 0.00 0.00 0.00 3.41
459 471 4.956075 TCTATCACAGATTCACAGGCTACA 59.044 41.667 0.00 0.00 0.00 2.74
650 683 3.190535 TCTTTTGTTATGCCGGCTTTCTC 59.809 43.478 29.70 14.37 0.00 2.87
828 893 0.813821 CTGAGACTCGGATGCTGTCA 59.186 55.000 5.24 0.00 33.56 3.58
848 913 3.723348 GCTCACCGGACCGTTTGC 61.723 66.667 9.46 7.82 0.00 3.68
972 1037 1.602323 ACTCGGAAATTTGCGCCCA 60.602 52.632 25.12 9.25 41.99 5.36
976 1041 1.737735 GGAAATTTGCGCCCAGTGC 60.738 57.895 4.18 0.00 39.75 4.40
1139 1204 6.716628 TGGTAGCTTTGATCTCTTTGAATGTT 59.283 34.615 0.00 0.00 0.00 2.71
1140 1205 7.882791 TGGTAGCTTTGATCTCTTTGAATGTTA 59.117 33.333 0.00 0.00 0.00 2.41
1141 1206 8.178313 GGTAGCTTTGATCTCTTTGAATGTTAC 58.822 37.037 0.00 0.00 0.00 2.50
1142 1207 7.992754 AGCTTTGATCTCTTTGAATGTTACT 57.007 32.000 0.00 0.00 0.00 2.24
1143 1208 8.038492 AGCTTTGATCTCTTTGAATGTTACTC 57.962 34.615 0.00 0.00 0.00 2.59
1144 1209 7.120432 AGCTTTGATCTCTTTGAATGTTACTCC 59.880 37.037 0.00 0.00 0.00 3.85
1145 1210 7.627300 GCTTTGATCTCTTTGAATGTTACTCCC 60.627 40.741 0.00 0.00 0.00 4.30
1146 1211 6.627087 TGATCTCTTTGAATGTTACTCCCT 57.373 37.500 0.00 0.00 0.00 4.20
1147 1212 6.644347 TGATCTCTTTGAATGTTACTCCCTC 58.356 40.000 0.00 0.00 0.00 4.30
1148 1213 5.422214 TCTCTTTGAATGTTACTCCCTCC 57.578 43.478 0.00 0.00 0.00 4.30
1149 1214 4.081642 TCTCTTTGAATGTTACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
1150 1215 3.581332 TCTTTGAATGTTACTCCCTCCGT 59.419 43.478 0.00 0.00 0.00 4.69
1151 1216 4.041198 TCTTTGAATGTTACTCCCTCCGTT 59.959 41.667 0.00 0.00 0.00 4.44
1152 1217 3.604875 TGAATGTTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
1153 1218 2.235402 TGAATGTTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
1154 1219 2.249309 ATGTTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
1155 1220 2.905415 TGTTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
1156 1221 3.173953 TGTTACTCCCTCCGTTCCTAA 57.826 47.619 0.00 0.00 0.00 2.69
1157 1222 3.509442 TGTTACTCCCTCCGTTCCTAAA 58.491 45.455 0.00 0.00 0.00 1.85
1158 1223 4.098894 TGTTACTCCCTCCGTTCCTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
1159 1224 5.271598 TGTTACTCCCTCCGTTCCTAAATA 58.728 41.667 0.00 0.00 0.00 1.40
1160 1225 5.901276 TGTTACTCCCTCCGTTCCTAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
1161 1226 6.384886 TGTTACTCCCTCCGTTCCTAAATATT 59.615 38.462 0.00 0.00 0.00 1.28
1162 1227 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1163 1228 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1164 1229 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1165 1230 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1166 1231 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1167 1232 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1168 1233 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1169 1234 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1170 1235 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1171 1236 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1172 1237 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1173 1238 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1186 1251 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1187 1252 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1188 1253 7.041780 TGTCTTTCTAGAGATTTCAACAAGTGC 60.042 37.037 0.00 0.00 0.00 4.40
1189 1254 7.172361 GTCTTTCTAGAGATTTCAACAAGTGCT 59.828 37.037 0.00 0.00 0.00 4.40
1190 1255 8.367911 TCTTTCTAGAGATTTCAACAAGTGCTA 58.632 33.333 0.00 0.00 0.00 3.49
1191 1256 7.891183 TTCTAGAGATTTCAACAAGTGCTAC 57.109 36.000 0.00 0.00 0.00 3.58
1192 1257 6.993079 TCTAGAGATTTCAACAAGTGCTACA 58.007 36.000 0.00 0.00 0.00 2.74
1193 1258 5.931441 AGAGATTTCAACAAGTGCTACAC 57.069 39.130 0.00 0.00 34.10 2.90
1194 1259 5.368145 AGAGATTTCAACAAGTGCTACACA 58.632 37.500 0.00 0.00 36.74 3.72
1204 1269 3.388272 TGCTACACACGGAGCAAAA 57.612 47.368 0.00 0.00 45.47 2.44
1205 1270 1.890876 TGCTACACACGGAGCAAAAT 58.109 45.000 0.00 0.00 45.47 1.82
1206 1271 1.535028 TGCTACACACGGAGCAAAATG 59.465 47.619 0.00 0.00 45.47 2.32
1207 1272 1.804151 GCTACACACGGAGCAAAATGA 59.196 47.619 0.00 0.00 38.62 2.57
1208 1273 2.159653 GCTACACACGGAGCAAAATGAG 60.160 50.000 0.00 0.00 38.62 2.90
1209 1274 1.967319 ACACACGGAGCAAAATGAGT 58.033 45.000 0.00 0.00 0.00 3.41
1210 1275 1.603802 ACACACGGAGCAAAATGAGTG 59.396 47.619 0.00 0.00 35.89 3.51
1211 1276 1.872952 CACACGGAGCAAAATGAGTGA 59.127 47.619 0.19 0.00 34.16 3.41
1212 1277 2.290367 CACACGGAGCAAAATGAGTGAA 59.710 45.455 0.19 0.00 34.16 3.18
1213 1278 3.058016 CACACGGAGCAAAATGAGTGAAT 60.058 43.478 0.19 0.00 34.16 2.57
1214 1279 3.189287 ACACGGAGCAAAATGAGTGAATC 59.811 43.478 0.19 0.00 34.16 2.52
1215 1280 3.438087 CACGGAGCAAAATGAGTGAATCT 59.562 43.478 0.00 0.00 0.00 2.40
1216 1281 4.631377 CACGGAGCAAAATGAGTGAATCTA 59.369 41.667 0.00 0.00 0.00 1.98
1217 1282 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1218 1283 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1219 1284 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1252 1317 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
1254 1319 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
1255 1320 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
1256 1321 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
1257 1322 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
1258 1323 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
1259 1324 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
1260 1325 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
1261 1326 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
1262 1327 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
1263 1328 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
1264 1329 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
1265 1330 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
1266 1331 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
1267 1332 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
1268 1333 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
1269 1334 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
1270 1335 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
1271 1336 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
1272 1337 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
1273 1338 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
1274 1339 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
1275 1340 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
1279 1344 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
1280 1345 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
1297 1362 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1298 1363 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1299 1364 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1300 1365 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1351 1416 2.223852 TGATGATGCATTCATTTGGCCG 60.224 45.455 0.00 0.00 45.29 6.13
1460 1537 1.903877 AATGAGGCGACAGGGACAGG 61.904 60.000 0.00 0.00 0.00 4.00
1461 1538 3.775654 GAGGCGACAGGGACAGGG 61.776 72.222 0.00 0.00 0.00 4.45
1462 1539 4.640690 AGGCGACAGGGACAGGGT 62.641 66.667 0.00 0.00 0.00 4.34
1463 1540 4.083862 GGCGACAGGGACAGGGTC 62.084 72.222 0.00 0.00 0.00 4.46
1464 1541 3.311110 GCGACAGGGACAGGGTCA 61.311 66.667 0.00 0.00 33.68 4.02
1465 1542 2.973899 CGACAGGGACAGGGTCAG 59.026 66.667 0.00 0.00 33.68 3.51
1560 1637 3.036431 GGGTTCAACAACTCCCTGG 57.964 57.895 0.00 0.00 37.18 4.45
1797 1878 9.748708 TTTTGGAATAACTTCATCTGTTGAAAG 57.251 29.630 3.07 1.21 43.64 2.62
1875 1957 7.014615 ACACTTTGGACAGATTAGCATTTTTCT 59.985 33.333 0.00 0.00 0.00 2.52
2178 2261 6.657966 TCCTCGTACATTTGAAAGTCTAGAGA 59.342 38.462 0.00 0.00 0.00 3.10
2310 2393 2.859165 TGTCTTTCCTACCTGCCAAG 57.141 50.000 0.00 0.00 0.00 3.61
2416 2538 7.941238 ACTTATCCTGTTATCCATTTCATGAGG 59.059 37.037 0.00 0.00 0.00 3.86
2707 2855 0.450983 GCAGAGAACATGCAAGCTCC 59.549 55.000 0.00 0.00 43.31 4.70
2805 2965 6.633856 AGCTTATTCATGTTTCCATTGGTTC 58.366 36.000 1.86 0.00 0.00 3.62
2914 3074 2.357760 GCCGCAAACGTACCTGGA 60.358 61.111 0.00 0.00 37.70 3.86
3065 3226 3.512287 CTTCGCCCGCGCATTGATC 62.512 63.158 8.75 0.00 39.59 2.92
3119 3280 0.737219 GACATTGATGCCAGTCAGCC 59.263 55.000 0.00 0.00 0.00 4.85
3120 3281 1.028330 ACATTGATGCCAGTCAGCCG 61.028 55.000 0.00 0.00 0.00 5.52
3121 3282 2.117156 ATTGATGCCAGTCAGCCGC 61.117 57.895 0.00 0.00 0.00 6.53
3206 3368 2.480555 CTGGTTCAATGCGGACGC 59.519 61.111 10.13 10.13 42.35 5.19
3209 3371 3.419759 GTTCAATGCGGACGCGGT 61.420 61.111 12.47 0.00 45.51 5.68
3218 3380 2.963371 GGACGCGGTCTGAGAAGT 59.037 61.111 12.47 0.00 32.47 3.01
3236 3398 1.685765 TCTAGTCCGGCCACTGCAT 60.686 57.895 2.24 0.00 40.13 3.96
3248 3410 0.245266 CACTGCATGGCATTGAAGCA 59.755 50.000 9.50 9.50 40.81 3.91
3315 3477 1.371558 GTCACCGCAAACCCTCTCT 59.628 57.895 0.00 0.00 0.00 3.10
3348 3510 1.089123 AACCCTCTCCACTCCTCTCT 58.911 55.000 0.00 0.00 0.00 3.10
3418 3580 0.179468 GTTAGGGAGGCCATGCGTAA 59.821 55.000 5.01 5.20 0.00 3.18
3427 3589 0.108138 GCCATGCGTAAGAGGTCACT 60.108 55.000 0.00 0.00 43.02 3.41
3579 3741 6.548441 AATTCGTCCGTTTGATTCAAGTTA 57.452 33.333 0.00 0.00 0.00 2.24
3580 3742 6.737254 ATTCGTCCGTTTGATTCAAGTTAT 57.263 33.333 0.00 0.00 0.00 1.89
3582 3744 7.655236 TTCGTCCGTTTGATTCAAGTTATTA 57.345 32.000 0.00 0.00 0.00 0.98
3584 3746 8.085720 TCGTCCGTTTGATTCAAGTTATTAAA 57.914 30.769 0.00 0.00 0.00 1.52
3586 3748 8.785101 CGTCCGTTTGATTCAAGTTATTAAATG 58.215 33.333 0.00 0.00 0.00 2.32
3587 3749 9.620660 GTCCGTTTGATTCAAGTTATTAAATGT 57.379 29.630 0.00 0.00 0.00 2.71
3588 3750 9.619316 TCCGTTTGATTCAAGTTATTAAATGTG 57.381 29.630 0.00 0.00 0.00 3.21
3631 3798 3.591254 GATGGCCGCCTCCCGTATC 62.591 68.421 11.61 0.00 34.38 2.24
3669 3836 1.299541 CGGATAGTGCGGCTGATTTT 58.700 50.000 0.00 0.00 0.00 1.82
3679 3846 2.976840 GCTGATTTTGGCGACGGCA 61.977 57.895 21.29 21.29 42.47 5.69
3680 3847 1.802636 CTGATTTTGGCGACGGCAT 59.197 52.632 25.55 10.58 42.47 4.40
3724 3892 7.070696 TGCCTAGATTTATCTTAGTGCTTGGTA 59.929 37.037 0.00 0.00 38.32 3.25
3741 3909 9.255304 GTGCTTGGTATTGTTTAAGAAATTGAA 57.745 29.630 0.00 0.00 0.00 2.69
3764 3933 7.444183 TGAATCACTCGAAGATTTTTGTACCTT 59.556 33.333 12.44 0.00 35.93 3.50
3779 3948 6.814076 TTGTACCTTTGTTAAAATTGCACG 57.186 33.333 0.00 0.00 0.00 5.34
3804 3976 3.471680 GCAACTTATGGTGGATCCTCTC 58.528 50.000 14.23 4.46 37.07 3.20
3952 4124 1.735360 CCCCAATTACAGCATGCCG 59.265 57.895 15.66 6.75 42.53 5.69
4287 4462 0.543749 GGCTATCCTCCAACAGCTGT 59.456 55.000 15.25 15.25 34.41 4.40
4438 4616 2.424601 CCGTGATCATGGTTTTGAGCAT 59.575 45.455 23.76 0.00 43.24 3.79
4638 4817 7.815549 ACACTTGTAAAACCTGTTTTTCGATTT 59.184 29.630 12.73 0.00 42.22 2.17
4660 4839 3.013219 TGTGCCGCTATTTATTCAAGCA 58.987 40.909 0.00 0.00 35.98 3.91
4661 4840 3.631686 TGTGCCGCTATTTATTCAAGCAT 59.368 39.130 0.00 0.00 35.98 3.79
4724 4903 2.094234 TCAACTCTTGCGCATGTAGCTA 60.094 45.455 21.14 0.00 42.61 3.32
4768 4947 4.853196 CAGTGTTGCTTTGGATTCGTAATG 59.147 41.667 0.00 0.00 0.00 1.90
4770 4949 5.703592 AGTGTTGCTTTGGATTCGTAATGTA 59.296 36.000 0.00 0.00 0.00 2.29
4771 4950 6.021596 GTGTTGCTTTGGATTCGTAATGTAG 58.978 40.000 0.00 0.00 0.00 2.74
4772 4951 5.935206 TGTTGCTTTGGATTCGTAATGTAGA 59.065 36.000 0.00 0.00 0.00 2.59
4773 4952 6.092122 TGTTGCTTTGGATTCGTAATGTAGAG 59.908 38.462 0.00 0.00 0.00 2.43
4776 4955 5.815740 GCTTTGGATTCGTAATGTAGAGGAA 59.184 40.000 0.00 0.00 0.00 3.36
4777 4956 6.315393 GCTTTGGATTCGTAATGTAGAGGAAA 59.685 38.462 0.00 0.00 0.00 3.13
4779 4958 7.605410 TTGGATTCGTAATGTAGAGGAAAAC 57.395 36.000 0.00 0.00 0.00 2.43
4858 5042 4.905429 TGGCTTATCTGCTGTTAACTCAA 58.095 39.130 7.22 0.00 0.00 3.02
4883 5067 9.888878 AAGTCTTGCAATGAAATATTATCATCG 57.111 29.630 0.00 4.77 36.53 3.84
4884 5068 9.060347 AGTCTTGCAATGAAATATTATCATCGT 57.940 29.630 0.00 0.00 36.53 3.73
4899 5083 3.925379 TCATCGTAGCAATGTGAACACT 58.075 40.909 6.51 0.00 0.00 3.55
4902 5086 3.723260 TCGTAGCAATGTGAACACTTCA 58.277 40.909 6.51 0.00 37.33 3.02
4961 5147 3.569701 TGATCTTTGTTTCTGGTTCTGGC 59.430 43.478 0.00 0.00 0.00 4.85
5028 5476 4.260866 GCACTAAGGCGACAAACTAACAAA 60.261 41.667 0.00 0.00 0.00 2.83
5036 5484 7.136772 AGGCGACAAACTAACAAACTTAATTC 58.863 34.615 0.00 0.00 0.00 2.17
5058 5506 3.662713 CGTTTCATTTCTCGTGCAGAGTG 60.663 47.826 11.37 5.12 46.86 3.51
5064 5512 1.160989 TCTCGTGCAGAGTGAGAGTC 58.839 55.000 11.37 0.00 46.86 3.36
5097 5545 0.740868 TCTCAGCATTAGCACGCACC 60.741 55.000 0.00 0.00 45.49 5.01
5101 5549 2.703409 CATTAGCACGCACCGAGC 59.297 61.111 0.00 0.00 43.14 5.03
5236 5687 1.560923 CTAGCTGTACACATGGCGAC 58.439 55.000 0.00 0.00 0.00 5.19
5297 5748 1.153289 CCCTCAAGTCCGGCATCTG 60.153 63.158 0.00 0.00 0.00 2.90
5338 5789 3.876914 TGAAGTGTTGCTTACAAGGAGTG 59.123 43.478 0.00 0.00 38.80 3.51
5340 5791 2.438021 AGTGTTGCTTACAAGGAGTGGA 59.562 45.455 0.00 0.00 38.80 4.02
5343 5794 3.072330 TGTTGCTTACAAGGAGTGGATGA 59.928 43.478 0.00 0.00 36.16 2.92
5344 5795 4.263462 TGTTGCTTACAAGGAGTGGATGAT 60.263 41.667 0.00 0.00 36.16 2.45
5345 5796 3.877559 TGCTTACAAGGAGTGGATGATG 58.122 45.455 0.00 0.00 0.00 3.07
5346 5797 2.615912 GCTTACAAGGAGTGGATGATGC 59.384 50.000 0.00 0.00 0.00 3.91
5418 5869 7.162082 CCTACTTGTATGTTTTCTTCACCTCT 58.838 38.462 0.00 0.00 0.00 3.69
5421 5872 4.651778 TGTATGTTTTCTTCACCTCTGGG 58.348 43.478 0.00 0.00 38.88 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.744414 TGGTTAGCGATGCTGAAGGC 60.744 55.000 0.70 0.00 40.10 4.35
8 9 1.009829 GTGGTTAGCGATGCTGAAGG 58.990 55.000 0.70 0.00 40.10 3.46
9 10 1.662629 CAGTGGTTAGCGATGCTGAAG 59.337 52.381 0.70 0.00 40.10 3.02
10 11 1.725641 CAGTGGTTAGCGATGCTGAA 58.274 50.000 0.70 0.00 40.10 3.02
11 12 0.740868 GCAGTGGTTAGCGATGCTGA 60.741 55.000 0.70 0.00 40.10 4.26
12 13 1.717937 GCAGTGGTTAGCGATGCTG 59.282 57.895 0.70 0.00 40.10 4.41
13 14 4.208632 GCAGTGGTTAGCGATGCT 57.791 55.556 0.00 0.00 43.41 3.79
19 20 3.188786 CCGAGCGCAGTGGTTAGC 61.189 66.667 11.47 0.00 0.00 3.09
20 21 3.188786 GCCGAGCGCAGTGGTTAG 61.189 66.667 11.47 0.00 37.47 2.34
21 22 4.752879 GGCCGAGCGCAGTGGTTA 62.753 66.667 11.47 0.00 40.31 2.85
33 34 4.351938 CACGTGAACTCGGGCCGA 62.352 66.667 29.14 29.14 34.94 5.54
38 39 1.999735 ACATATTGCACGTGAACTCGG 59.000 47.619 22.23 6.42 34.94 4.63
45 46 5.333339 GGTCATAGCTTACATATTGCACGTG 60.333 44.000 12.28 12.28 0.00 4.49
55 56 9.368416 TCACTTCTAATAGGTCATAGCTTACAT 57.632 33.333 0.00 0.00 0.00 2.29
90 91 7.770801 AAAAAGAAGGAACATGTGTAAAAGC 57.229 32.000 0.00 0.00 0.00 3.51
140 141 7.571089 AAAGAAACAAAAGTACGTTGGAAAC 57.429 32.000 14.42 0.00 45.31 2.78
197 206 9.538508 CAACAAATGGAGAAGAGAAAAGAAAAT 57.461 29.630 0.00 0.00 0.00 1.82
202 211 7.223387 CCAAACAACAAATGGAGAAGAGAAAAG 59.777 37.037 0.00 0.00 36.27 2.27
207 216 4.342092 ACCCAAACAACAAATGGAGAAGAG 59.658 41.667 0.00 0.00 36.27 2.85
228 237 9.208022 CCAAAAATGGAGAAGAAAATAGAAACC 57.792 33.333 0.00 0.00 0.00 3.27
235 244 8.255111 AGAGAACCAAAAATGGAGAAGAAAAT 57.745 30.769 1.10 0.00 0.00 1.82
240 249 7.225341 CCAAAAAGAGAACCAAAAATGGAGAAG 59.775 37.037 1.10 0.00 0.00 2.85
327 336 9.956720 CATCTTGAGAAGTGTTGAAAAGTATTT 57.043 29.630 0.00 0.00 42.41 1.40
328 337 8.571336 CCATCTTGAGAAGTGTTGAAAAGTATT 58.429 33.333 0.00 0.00 0.00 1.89
330 339 6.486657 CCCATCTTGAGAAGTGTTGAAAAGTA 59.513 38.462 0.00 0.00 0.00 2.24
332 341 5.766222 CCCATCTTGAGAAGTGTTGAAAAG 58.234 41.667 0.00 0.00 0.00 2.27
333 342 4.037923 GCCCATCTTGAGAAGTGTTGAAAA 59.962 41.667 0.00 0.00 0.00 2.29
334 343 3.569701 GCCCATCTTGAGAAGTGTTGAAA 59.430 43.478 0.00 0.00 0.00 2.69
376 388 0.988145 TAAGGGAGAGCACATGGGGG 60.988 60.000 0.00 0.00 0.00 5.40
378 390 0.911769 TGTAAGGGAGAGCACATGGG 59.088 55.000 0.00 0.00 0.00 4.00
379 391 1.745141 GCTGTAAGGGAGAGCACATGG 60.745 57.143 0.00 0.00 43.99 3.66
391 403 5.189659 AGCTACTATTTCTCGCTGTAAGG 57.810 43.478 0.00 0.00 0.00 2.69
392 404 4.907010 CGAGCTACTATTTCTCGCTGTAAG 59.093 45.833 0.00 0.00 42.28 2.34
393 405 4.573607 TCGAGCTACTATTTCTCGCTGTAA 59.426 41.667 6.06 0.00 46.44 2.41
394 406 4.124970 TCGAGCTACTATTTCTCGCTGTA 58.875 43.478 6.06 0.00 46.44 2.74
395 407 2.943690 TCGAGCTACTATTTCTCGCTGT 59.056 45.455 6.06 0.00 46.44 4.40
396 408 3.550561 CTCGAGCTACTATTTCTCGCTG 58.449 50.000 0.00 0.00 46.44 5.18
397 409 2.031508 GCTCGAGCTACTATTTCTCGCT 60.032 50.000 29.88 0.00 46.44 4.93
398 410 2.287069 TGCTCGAGCTACTATTTCTCGC 60.287 50.000 35.27 7.76 46.44 5.03
400 412 3.551250 GGGTGCTCGAGCTACTATTTCTC 60.551 52.174 35.27 16.68 42.66 2.87
401 413 2.362717 GGGTGCTCGAGCTACTATTTCT 59.637 50.000 35.27 0.00 42.66 2.52
402 414 2.546162 GGGGTGCTCGAGCTACTATTTC 60.546 54.545 35.27 17.85 42.66 2.17
403 415 1.413077 GGGGTGCTCGAGCTACTATTT 59.587 52.381 35.27 0.00 42.66 1.40
404 416 1.041437 GGGGTGCTCGAGCTACTATT 58.959 55.000 35.27 0.00 42.66 1.73
405 417 0.106167 TGGGGTGCTCGAGCTACTAT 60.106 55.000 35.27 0.00 42.66 2.12
406 418 0.752009 CTGGGGTGCTCGAGCTACTA 60.752 60.000 35.27 21.79 42.66 1.82
407 419 2.037367 TGGGGTGCTCGAGCTACT 59.963 61.111 35.27 0.00 42.66 2.57
408 420 2.496817 CTGGGGTGCTCGAGCTAC 59.503 66.667 35.27 28.53 42.66 3.58
409 421 2.589610 ATCCTGGGGTGCTCGAGCTA 62.590 60.000 35.27 20.40 42.66 3.32
425 437 8.768955 GTGAATCTGTGATAGAACAACATATCC 58.231 37.037 0.00 0.00 39.30 2.59
426 438 9.317936 TGTGAATCTGTGATAGAACAACATATC 57.682 33.333 0.00 0.00 39.30 1.63
427 439 9.322773 CTGTGAATCTGTGATAGAACAACATAT 57.677 33.333 0.00 0.00 39.30 1.78
428 440 7.765819 CCTGTGAATCTGTGATAGAACAACATA 59.234 37.037 0.00 0.00 39.30 2.29
429 441 6.596888 CCTGTGAATCTGTGATAGAACAACAT 59.403 38.462 0.00 0.00 39.30 2.71
430 442 5.934043 CCTGTGAATCTGTGATAGAACAACA 59.066 40.000 0.00 0.00 39.30 3.33
431 443 5.163814 GCCTGTGAATCTGTGATAGAACAAC 60.164 44.000 0.00 0.00 39.30 3.32
432 444 4.937620 GCCTGTGAATCTGTGATAGAACAA 59.062 41.667 0.00 0.00 39.30 2.83
433 445 4.223700 AGCCTGTGAATCTGTGATAGAACA 59.776 41.667 0.00 0.00 39.30 3.18
434 446 4.764172 AGCCTGTGAATCTGTGATAGAAC 58.236 43.478 0.00 0.00 39.30 3.01
435 447 5.422012 TGTAGCCTGTGAATCTGTGATAGAA 59.578 40.000 0.00 0.00 39.30 2.10
436 448 4.956075 TGTAGCCTGTGAATCTGTGATAGA 59.044 41.667 0.00 0.00 40.37 1.98
437 449 5.268118 TGTAGCCTGTGAATCTGTGATAG 57.732 43.478 0.00 0.00 0.00 2.08
438 450 4.442052 GCTGTAGCCTGTGAATCTGTGATA 60.442 45.833 0.00 0.00 34.31 2.15
439 451 3.681034 GCTGTAGCCTGTGAATCTGTGAT 60.681 47.826 0.00 0.00 34.31 3.06
440 452 2.354103 GCTGTAGCCTGTGAATCTGTGA 60.354 50.000 0.00 0.00 34.31 3.58
441 453 2.005451 GCTGTAGCCTGTGAATCTGTG 58.995 52.381 0.00 0.00 34.31 3.66
442 454 2.393271 GCTGTAGCCTGTGAATCTGT 57.607 50.000 0.00 0.00 34.31 3.41
459 471 3.331889 CCAATCCCCAATATGTCTAGGCT 59.668 47.826 0.00 0.00 0.00 4.58
530 552 2.359169 GCGTGAGAGATGGTGGGGA 61.359 63.158 0.00 0.00 0.00 4.81
650 683 6.951062 AAAAAGAAAGAGAAAGGAGACCTG 57.049 37.500 0.00 0.00 32.13 4.00
828 893 2.803817 AAACGGTCCGGTGAGCTGT 61.804 57.895 17.28 0.00 36.84 4.40
837 902 0.521291 ACATGATTGCAAACGGTCCG 59.479 50.000 10.48 10.48 0.00 4.79
848 913 2.401583 TGAGAACGGGGACATGATTG 57.598 50.000 0.00 0.00 0.00 2.67
972 1037 1.973281 CCATCAAACCGGCAGCACT 60.973 57.895 0.00 0.00 0.00 4.40
976 1041 0.673437 AAACACCATCAAACCGGCAG 59.327 50.000 0.00 0.00 0.00 4.85
1018 1083 5.944007 AGTACCACAATAAGGCTTAAACCTG 59.056 40.000 11.59 8.86 39.93 4.00
1139 1204 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1140 1205 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1141 1206 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1142 1207 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1143 1208 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1144 1209 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1145 1210 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1146 1211 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1147 1212 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1160 1225 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
1161 1226 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1162 1227 7.041780 GCACTTGTTGAAATCTCTAGAAAGACA 60.042 37.037 0.00 0.00 0.00 3.41
1163 1228 7.172361 AGCACTTGTTGAAATCTCTAGAAAGAC 59.828 37.037 0.00 0.00 0.00 3.01
1164 1229 7.220030 AGCACTTGTTGAAATCTCTAGAAAGA 58.780 34.615 0.00 0.00 0.00 2.52
1165 1230 7.432350 AGCACTTGTTGAAATCTCTAGAAAG 57.568 36.000 0.00 0.00 0.00 2.62
1166 1231 7.931407 TGTAGCACTTGTTGAAATCTCTAGAAA 59.069 33.333 0.00 0.00 0.00 2.52
1167 1232 7.385205 GTGTAGCACTTGTTGAAATCTCTAGAA 59.615 37.037 0.00 0.00 0.00 2.10
1168 1233 6.868864 GTGTAGCACTTGTTGAAATCTCTAGA 59.131 38.462 0.00 0.00 0.00 2.43
1169 1234 6.646653 TGTGTAGCACTTGTTGAAATCTCTAG 59.353 38.462 0.90 0.00 35.11 2.43
1170 1235 6.423905 GTGTGTAGCACTTGTTGAAATCTCTA 59.576 38.462 0.90 0.00 44.41 2.43
1171 1236 5.237344 GTGTGTAGCACTTGTTGAAATCTCT 59.763 40.000 0.90 0.00 44.41 3.10
1172 1237 5.444122 GTGTGTAGCACTTGTTGAAATCTC 58.556 41.667 0.90 0.00 44.41 2.75
1173 1238 4.024893 CGTGTGTAGCACTTGTTGAAATCT 60.025 41.667 0.90 0.00 45.57 2.40
1174 1239 4.211389 CGTGTGTAGCACTTGTTGAAATC 58.789 43.478 0.90 0.00 45.57 2.17
1175 1240 3.003275 CCGTGTGTAGCACTTGTTGAAAT 59.997 43.478 0.90 0.00 45.57 2.17
1176 1241 2.353269 CCGTGTGTAGCACTTGTTGAAA 59.647 45.455 0.90 0.00 45.57 2.69
1177 1242 1.937223 CCGTGTGTAGCACTTGTTGAA 59.063 47.619 0.90 0.00 45.57 2.69
1178 1243 1.137282 TCCGTGTGTAGCACTTGTTGA 59.863 47.619 0.90 0.00 45.57 3.18
1179 1244 1.526887 CTCCGTGTGTAGCACTTGTTG 59.473 52.381 0.90 0.00 45.57 3.33
1180 1245 1.865865 CTCCGTGTGTAGCACTTGTT 58.134 50.000 0.90 0.00 45.57 2.83
1181 1246 0.600255 GCTCCGTGTGTAGCACTTGT 60.600 55.000 0.90 0.00 45.57 3.16
1182 1247 0.599991 TGCTCCGTGTGTAGCACTTG 60.600 55.000 0.00 0.00 43.56 3.16
1183 1248 1.745890 TGCTCCGTGTGTAGCACTT 59.254 52.632 0.00 0.00 43.56 3.16
1184 1249 3.455152 TGCTCCGTGTGTAGCACT 58.545 55.556 0.00 0.00 43.56 4.40
1186 1251 1.535028 CATTTTGCTCCGTGTGTAGCA 59.465 47.619 0.00 0.00 46.59 3.49
1187 1252 1.804151 TCATTTTGCTCCGTGTGTAGC 59.196 47.619 0.00 0.00 39.25 3.58
1188 1253 3.067106 ACTCATTTTGCTCCGTGTGTAG 58.933 45.455 0.00 0.00 0.00 2.74
1189 1254 2.805671 CACTCATTTTGCTCCGTGTGTA 59.194 45.455 0.00 0.00 0.00 2.90
1190 1255 1.603802 CACTCATTTTGCTCCGTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
1191 1256 1.872952 TCACTCATTTTGCTCCGTGTG 59.127 47.619 0.00 0.00 0.00 3.82
1192 1257 2.254546 TCACTCATTTTGCTCCGTGT 57.745 45.000 0.00 0.00 0.00 4.49
1193 1258 3.438087 AGATTCACTCATTTTGCTCCGTG 59.562 43.478 0.00 0.00 0.00 4.94
1194 1259 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1195 1260 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1196 1261 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1197 1262 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1226 1291 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
1228 1293 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
1229 1294 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
1230 1295 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
1231 1296 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
1232 1297 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
1233 1298 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
1234 1299 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
1235 1300 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
1236 1301 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
1237 1302 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
1253 1318 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
1254 1319 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
1271 1336 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1272 1337 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1273 1338 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1274 1339 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1275 1340 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1276 1341 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1277 1342 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1278 1343 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1279 1344 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1280 1345 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1281 1346 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1282 1347 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1283 1348 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1284 1349 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1285 1350 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
1286 1351 3.525199 ACTAACTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
1287 1352 2.311243 ACTAACTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
1288 1353 2.732763 ACTAACTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
1289 1354 4.492611 CAAACTAACTACTCCCTCCGTTC 58.507 47.826 0.00 0.00 0.00 3.95
1290 1355 3.260128 CCAAACTAACTACTCCCTCCGTT 59.740 47.826 0.00 0.00 0.00 4.44
1291 1356 2.830321 CCAAACTAACTACTCCCTCCGT 59.170 50.000 0.00 0.00 0.00 4.69
1292 1357 2.418334 GCCAAACTAACTACTCCCTCCG 60.418 54.545 0.00 0.00 0.00 4.63
1293 1358 2.570302 TGCCAAACTAACTACTCCCTCC 59.430 50.000 0.00 0.00 0.00 4.30
1294 1359 3.975168 TGCCAAACTAACTACTCCCTC 57.025 47.619 0.00 0.00 0.00 4.30
1295 1360 3.054361 CCATGCCAAACTAACTACTCCCT 60.054 47.826 0.00 0.00 0.00 4.20
1296 1361 3.279434 CCATGCCAAACTAACTACTCCC 58.721 50.000 0.00 0.00 0.00 4.30
1297 1362 2.683362 GCCATGCCAAACTAACTACTCC 59.317 50.000 0.00 0.00 0.00 3.85
1298 1363 3.343617 TGCCATGCCAAACTAACTACTC 58.656 45.455 0.00 0.00 0.00 2.59
1299 1364 3.433306 TGCCATGCCAAACTAACTACT 57.567 42.857 0.00 0.00 0.00 2.57
1300 1365 4.513198 TTTGCCATGCCAAACTAACTAC 57.487 40.909 0.00 0.00 30.28 2.73
1351 1416 5.643379 TGAACAGCCAAATTACCAATCTC 57.357 39.130 0.00 0.00 0.00 2.75
1460 1537 1.279025 TATTGCCCCTGTCCCTGACC 61.279 60.000 0.00 0.00 0.00 4.02
1461 1538 0.107165 GTATTGCCCCTGTCCCTGAC 60.107 60.000 0.00 0.00 0.00 3.51
1462 1539 1.622607 CGTATTGCCCCTGTCCCTGA 61.623 60.000 0.00 0.00 0.00 3.86
1463 1540 1.153168 CGTATTGCCCCTGTCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
1464 1541 2.375345 CCGTATTGCCCCTGTCCCT 61.375 63.158 0.00 0.00 0.00 4.20
1465 1542 2.192175 CCGTATTGCCCCTGTCCC 59.808 66.667 0.00 0.00 0.00 4.46
1560 1637 6.995364 GGATCTCTTCCAGGGTAACTATTAC 58.005 44.000 0.00 0.00 44.74 1.89
1719 1796 6.674037 GCATACAGCAGACATGAAACTAACTG 60.674 42.308 0.00 9.17 44.79 3.16
1797 1878 4.501400 CCAAAAAGGTTGACATCTTGGACC 60.501 45.833 4.50 0.00 34.97 4.46
1875 1957 7.458397 ACCACTAATATGTCCAAAGTTTCTCA 58.542 34.615 0.00 0.00 0.00 3.27
2178 2261 4.209288 CACGATGTCTTCACGAAAACTCTT 59.791 41.667 0.00 0.00 0.00 2.85
2310 2393 7.327275 CGATATGCAAGTCCAGTTAATCTACTC 59.673 40.741 0.00 0.00 0.00 2.59
2398 2481 5.668135 ATCCCCTCATGAAATGGATAACA 57.332 39.130 15.26 0.00 46.73 2.41
2399 2482 6.983906 AAATCCCCTCATGAAATGGATAAC 57.016 37.500 16.53 0.00 46.73 1.89
2416 2538 8.707938 GCAAAAGGCATATGATATTAAATCCC 57.292 34.615 6.97 0.00 43.97 3.85
2542 2682 3.652869 TGAGAACAAGGGGAGAAGACATT 59.347 43.478 0.00 0.00 0.00 2.71
2731 2879 9.366216 CCCCATTTATTACTAAGTTTTTCTTGC 57.634 33.333 0.00 0.00 37.56 4.01
2765 2925 0.322975 AGCTATAGATGCGCAAGGGG 59.677 55.000 17.11 4.04 38.28 4.79
2805 2965 4.963318 TTGGAGATGCCCTAATAGAGTG 57.037 45.455 0.00 0.00 34.97 3.51
2926 3086 1.974875 GGTTTGCGGGAATTCGGGT 60.975 57.895 0.00 0.00 0.00 5.28
2952 3112 2.531685 TCAACCCTCCCCCAGGTG 60.532 66.667 0.00 0.00 41.51 4.00
3034 3195 1.228657 GGCGAAGTTTCAAGAGCGGT 61.229 55.000 0.00 0.00 0.00 5.68
3035 3196 1.497722 GGCGAAGTTTCAAGAGCGG 59.502 57.895 0.00 0.00 0.00 5.52
3036 3197 1.497722 GGGCGAAGTTTCAAGAGCG 59.502 57.895 0.00 0.00 0.00 5.03
3037 3198 1.497722 CGGGCGAAGTTTCAAGAGC 59.502 57.895 0.00 0.00 0.00 4.09
3038 3199 1.497722 GCGGGCGAAGTTTCAAGAG 59.502 57.895 0.00 0.00 0.00 2.85
3039 3200 2.314647 CGCGGGCGAAGTTTCAAGA 61.315 57.895 7.38 0.00 42.83 3.02
3040 3201 2.173382 CGCGGGCGAAGTTTCAAG 59.827 61.111 7.38 0.00 42.83 3.02
3065 3226 4.463879 CTGGAGCGGCTGACCAGG 62.464 72.222 23.40 9.99 44.96 4.45
3089 3250 0.992072 ATCAATGTCGTCGAGTTGCG 59.008 50.000 12.97 0.00 42.69 4.85
3121 3282 0.247894 GAGTCGCGTCTGCTCTGTAG 60.248 60.000 11.38 0.00 39.65 2.74
3133 3294 2.960957 AATCAGGCCATCGAGTCGCG 62.961 60.000 7.92 0.00 42.69 5.87
3135 3296 0.387202 AGAATCAGGCCATCGAGTCG 59.613 55.000 5.01 6.09 31.75 4.18
3171 3333 4.803426 CGCCACTCTCCCGTCTGC 62.803 72.222 0.00 0.00 0.00 4.26
3206 3368 1.666700 CGGACTAGACTTCTCAGACCG 59.333 57.143 0.00 0.00 0.00 4.79
3209 3371 1.682394 GGCCGGACTAGACTTCTCAGA 60.682 57.143 5.05 0.00 0.00 3.27
3218 3380 1.685765 ATGCAGTGGCCGGACTAGA 60.686 57.895 9.82 0.00 40.13 2.43
3236 3398 1.600356 TGACGCTGCTTCAATGCCA 60.600 52.632 6.34 0.00 0.00 4.92
3315 3477 1.130054 AGGGTTTGCAGAGAGGAGCA 61.130 55.000 0.00 0.00 39.32 4.26
3348 3510 2.437180 CGCTGCCATGGAGAAGCA 60.437 61.111 25.26 12.67 35.33 3.91
3406 3568 1.264749 TGACCTCTTACGCATGGCCT 61.265 55.000 3.32 0.00 0.00 5.19
3418 3580 0.611340 GGTACCGGACAGTGACCTCT 60.611 60.000 9.46 0.00 0.00 3.69
3427 3589 2.519771 ACTACATGAGGTACCGGACA 57.480 50.000 9.46 8.98 0.00 4.02
3579 3741 4.142773 CCCTAAACGTCGCACACATTTAAT 60.143 41.667 0.00 0.00 0.00 1.40
3580 3742 3.186817 CCCTAAACGTCGCACACATTTAA 59.813 43.478 0.00 0.00 0.00 1.52
3582 3744 1.533731 CCCTAAACGTCGCACACATTT 59.466 47.619 0.00 0.00 0.00 2.32
3584 3746 1.296056 GCCCTAAACGTCGCACACAT 61.296 55.000 0.00 0.00 0.00 3.21
3586 3748 1.957186 TGCCCTAAACGTCGCACAC 60.957 57.895 0.00 0.00 0.00 3.82
3587 3749 2.422165 TGCCCTAAACGTCGCACA 59.578 55.556 0.00 0.00 0.00 4.57
3588 3750 2.858158 GTGCCCTAAACGTCGCAC 59.142 61.111 8.30 8.30 44.17 5.34
3669 3836 3.030168 ATCTCCAATGCCGTCGCCA 62.030 57.895 0.00 0.00 0.00 5.69
3679 3846 1.064906 CACACTGAGGGCATCTCCAAT 60.065 52.381 0.00 0.00 41.76 3.16
3680 3847 0.325933 CACACTGAGGGCATCTCCAA 59.674 55.000 0.00 0.00 41.76 3.53
3693 3861 6.201806 GCACTAAGATAAATCTAGGCACACTG 59.798 42.308 0.00 0.00 35.76 3.66
3741 3909 7.228706 ACAAAGGTACAAAAATCTTCGAGTGAT 59.771 33.333 0.00 0.00 0.00 3.06
3760 3929 3.127589 GGCGTGCAATTTTAACAAAGGT 58.872 40.909 0.00 0.00 0.00 3.50
3764 3933 1.772182 CGGGCGTGCAATTTTAACAA 58.228 45.000 0.00 0.00 0.00 2.83
3779 3948 0.751643 ATCCACCATAAGTTGCGGGC 60.752 55.000 0.00 0.00 0.00 6.13
3952 4124 7.246311 CACAACATGATGTCCAATCTAACTTC 58.754 38.462 5.51 0.00 0.00 3.01
4039 4211 7.852945 GCAGTTGTCTGATATTAATAACAGTGC 59.147 37.037 24.10 21.81 43.76 4.40
4420 4598 3.127376 CACGATGCTCAAAACCATGATCA 59.873 43.478 0.00 0.00 30.81 2.92
4438 4616 1.484653 CCAGGGTATTGATGACCACGA 59.515 52.381 0.00 0.00 38.86 4.35
4638 4817 3.441922 TGCTTGAATAAATAGCGGCACAA 59.558 39.130 1.45 0.00 37.73 3.33
4660 4839 5.297776 CGGGCTACTGAAGAAAATGATCAAT 59.702 40.000 0.00 0.00 0.00 2.57
4661 4840 4.635765 CGGGCTACTGAAGAAAATGATCAA 59.364 41.667 0.00 0.00 0.00 2.57
4768 4947 5.347907 CACATAGTGTTCCGTTTTCCTCTAC 59.652 44.000 0.00 0.00 0.00 2.59
4770 4949 4.315803 CACATAGTGTTCCGTTTTCCTCT 58.684 43.478 0.00 0.00 0.00 3.69
4771 4950 3.435671 CCACATAGTGTTCCGTTTTCCTC 59.564 47.826 0.00 0.00 0.00 3.71
4772 4951 3.408634 CCACATAGTGTTCCGTTTTCCT 58.591 45.455 0.00 0.00 0.00 3.36
4773 4952 2.486592 CCCACATAGTGTTCCGTTTTCC 59.513 50.000 0.00 0.00 0.00 3.13
4776 4955 2.158726 ACACCCACATAGTGTTCCGTTT 60.159 45.455 0.00 0.00 46.07 3.60
4777 4956 1.418637 ACACCCACATAGTGTTCCGTT 59.581 47.619 0.00 0.00 46.07 4.44
4779 4958 3.927555 ACACCCACATAGTGTTCCG 57.072 52.632 0.00 0.00 46.07 4.30
4858 5042 9.060347 ACGATGATAATATTTCATTGCAAGACT 57.940 29.630 18.29 0.00 38.17 3.24
4883 5067 7.698836 AAAAATGAAGTGTTCACATTGCTAC 57.301 32.000 5.74 0.00 43.48 3.58
4930 5116 9.696917 AACCAGAAACAAAGATCATTACAATTC 57.303 29.630 0.00 0.00 0.00 2.17
4932 5118 9.082313 AGAACCAGAAACAAAGATCATTACAAT 57.918 29.630 0.00 0.00 0.00 2.71
4934 5120 7.040478 CCAGAACCAGAAACAAAGATCATTACA 60.040 37.037 0.00 0.00 0.00 2.41
4935 5121 7.308435 CCAGAACCAGAAACAAAGATCATTAC 58.692 38.462 0.00 0.00 0.00 1.89
4961 5147 7.751732 TCTGTCATTCGAAACCATAAAGAATG 58.248 34.615 0.00 9.43 45.48 2.67
5028 5476 6.077838 GCACGAGAAATGAAACGAATTAAGT 58.922 36.000 0.00 0.00 0.00 2.24
5036 5484 2.476619 ACTCTGCACGAGAAATGAAACG 59.523 45.455 16.81 0.00 42.62 3.60
5097 5545 0.649475 CTTGGAAGCATTCTCGCTCG 59.351 55.000 0.00 0.00 46.56 5.03
5101 5549 2.099141 TGGTCTTGGAAGCATTCTCG 57.901 50.000 0.00 0.00 46.56 4.04
5112 5560 3.443681 ACAGTTTTGTGTCTTGGTCTTGG 59.556 43.478 0.00 0.00 35.83 3.61
5297 5748 4.602340 TCAGGGAGTAGAAACAGTGAAC 57.398 45.455 0.00 0.00 0.00 3.18
5338 5789 1.071857 TCTCTGGAGCATGCATCATCC 59.928 52.381 21.98 18.05 34.26 3.51
5340 5791 1.072489 CCTCTCTGGAGCATGCATCAT 59.928 52.381 21.98 0.00 34.26 2.45
5343 5794 1.798626 TACCTCTCTGGAGCATGCAT 58.201 50.000 21.98 4.75 34.26 3.96
5344 5795 1.571955 TTACCTCTCTGGAGCATGCA 58.428 50.000 21.98 0.00 38.21 3.96
5345 5796 2.559440 CTTTACCTCTCTGGAGCATGC 58.441 52.381 10.51 10.51 38.21 4.06
5346 5797 2.768527 TCCTTTACCTCTCTGGAGCATG 59.231 50.000 0.00 0.00 38.21 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.