Multiple sequence alignment - TraesCS4D01G208200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G208200 chr4D 100.000 7191 0 0 1 7191 358481628 358474438 0.000000e+00 13280.0
1 TraesCS4D01G208200 chr4D 93.811 307 16 3 522 825 472441812 472442118 6.570000e-125 459.0
2 TraesCS4D01G208200 chr4D 91.633 251 19 2 6942 7191 77117775 77118024 5.340000e-91 346.0
3 TraesCS4D01G208200 chr4D 92.116 241 18 1 6951 7191 405451557 405451796 8.940000e-89 339.0
4 TraesCS4D01G208200 chr4D 82.879 257 19 9 2672 2904 323587189 323586934 2.630000e-49 207.0
5 TraesCS4D01G208200 chr4D 91.837 98 6 1 4694 4791 500440128 500440033 1.260000e-27 135.0
6 TraesCS4D01G208200 chr4D 100.000 34 0 0 6548 6581 12440225 12440258 6.020000e-06 63.9
7 TraesCS4D01G208200 chr4B 94.630 4730 163 33 2272 6967 441679705 441675033 0.000000e+00 7243.0
8 TraesCS4D01G208200 chr4B 96.322 1604 51 5 831 2433 441681299 441679703 0.000000e+00 2628.0
9 TraesCS4D01G208200 chr4B 90.769 130 10 2 88 217 441681417 441681290 9.590000e-39 172.0
10 TraesCS4D01G208200 chr4A 96.014 3889 117 14 827 4700 106901658 106905523 0.000000e+00 6288.0
11 TraesCS4D01G208200 chr4A 95.142 1235 34 9 5654 6872 106906727 106907951 0.000000e+00 1925.0
12 TraesCS4D01G208200 chr4A 96.656 927 31 0 4736 5662 106905669 106906595 0.000000e+00 1541.0
13 TraesCS4D01G208200 chr4A 94.389 303 15 2 525 825 17248095 17247793 1.410000e-126 464.0
14 TraesCS4D01G208200 chr4A 92.409 303 8 2 231 518 208931425 208931123 1.120000e-112 418.0
15 TraesCS4D01G208200 chr4A 79.539 347 62 7 2900 3239 407923280 407923624 9.320000e-59 239.0
16 TraesCS4D01G208200 chr4A 94.681 94 5 0 139 232 106901568 106901661 5.810000e-31 147.0
17 TraesCS4D01G208200 chr4A 77.519 258 33 11 2672 2904 354357574 354357317 1.630000e-26 132.0
18 TraesCS4D01G208200 chr4A 100.000 34 0 0 6548 6581 603947591 603947624 6.020000e-06 63.9
19 TraesCS4D01G208200 chr7A 87.268 699 68 10 3882 4563 89643405 89642711 0.000000e+00 778.0
20 TraesCS4D01G208200 chr7A 88.000 375 31 5 3614 3974 727844206 727843832 1.430000e-116 431.0
21 TraesCS4D01G208200 chr7A 90.997 311 13 3 227 522 148252424 148252114 8.690000e-109 405.0
22 TraesCS4D01G208200 chr7A 91.188 261 19 3 3615 3871 89643956 89643696 1.150000e-92 351.0
23 TraesCS4D01G208200 chr7A 89.199 287 18 8 2267 2545 542815817 542816098 5.340000e-91 346.0
24 TraesCS4D01G208200 chr7A 80.695 259 25 4 2671 2904 10613784 10613526 2.060000e-40 178.0
25 TraesCS4D01G208200 chr3A 89.106 615 45 8 231 825 151313257 151313869 0.000000e+00 745.0
26 TraesCS4D01G208200 chr3A 93.610 313 17 3 526 836 26583692 26583381 1.410000e-126 464.0
27 TraesCS4D01G208200 chr3A 94.389 303 15 2 525 825 697523369 697523067 1.410000e-126 464.0
28 TraesCS4D01G208200 chr3A 86.133 375 38 5 3614 3974 667236084 667235710 6.760000e-105 392.0
29 TraesCS4D01G208200 chr3A 87.847 288 22 5 2268 2549 208071547 208071267 6.960000e-85 326.0
30 TraesCS4D01G208200 chr3A 79.468 263 26 9 2668 2904 276206251 276205991 2.080000e-35 161.0
31 TraesCS4D01G208200 chr3A 97.368 38 1 0 6544 6581 624641918 624641881 1.670000e-06 65.8
32 TraesCS4D01G208200 chr3A 93.023 43 2 1 6538 6579 555409451 555409493 2.170000e-05 62.1
33 TraesCS4D01G208200 chr5A 93.631 314 16 3 525 834 567893752 567893439 3.930000e-127 466.0
34 TraesCS4D01G208200 chr5A 93.269 312 19 2 525 834 1838947 1838636 6.570000e-125 459.0
35 TraesCS4D01G208200 chr5A 94.059 303 16 2 525 825 630124084 630123782 6.570000e-125 459.0
36 TraesCS4D01G208200 chr5A 92.508 307 8 2 231 522 549204336 549204642 6.670000e-115 425.0
37 TraesCS4D01G208200 chr5A 82.422 256 20 5 2674 2904 285321388 285321133 4.400000e-47 200.0
38 TraesCS4D01G208200 chr5A 82.143 252 20 6 2678 2904 285323026 285322775 7.360000e-45 193.0
39 TraesCS4D01G208200 chr1B 83.591 518 64 12 235 735 503937064 503936551 3.930000e-127 466.0
40 TraesCS4D01G208200 chr1B 80.970 268 22 8 2665 2904 214174497 214174231 1.230000e-42 185.0
41 TraesCS4D01G208200 chr1B 80.460 261 22 7 2672 2904 214172792 214172533 9.590000e-39 172.0
42 TraesCS4D01G208200 chr1B 80.077 261 23 7 2672 2904 214169564 214169305 4.460000e-37 167.0
43 TraesCS4D01G208200 chr1B 90.816 98 5 1 4694 4791 452754462 452754369 2.110000e-25 128.0
44 TraesCS4D01G208200 chr6D 92.188 320 19 6 509 825 353638218 353637902 1.420000e-121 448.0
45 TraesCS4D01G208200 chr6D 92.157 306 10 1 231 522 179949474 179949779 3.100000e-113 420.0
46 TraesCS4D01G208200 chr6D 93.913 230 14 0 6960 7189 314501516 314501287 1.480000e-91 348.0
47 TraesCS4D01G208200 chr6D 92.562 242 15 3 6951 7191 352834077 352834316 1.920000e-90 344.0
48 TraesCS4D01G208200 chr6D 89.899 99 9 1 4694 4792 327364355 327364452 7.570000e-25 126.0
49 TraesCS4D01G208200 chr7D 92.114 317 10 8 231 532 533752674 533752358 3.980000e-117 433.0
50 TraesCS4D01G208200 chr7D 92.532 308 9 1 229 522 539382081 539381774 5.150000e-116 429.0
51 TraesCS4D01G208200 chr7D 91.857 307 10 2 231 522 265507769 265508075 1.440000e-111 414.0
52 TraesCS4D01G208200 chr7D 88.776 98 9 1 4694 4791 235573649 235573554 1.270000e-22 119.0
53 TraesCS4D01G208200 chr6A 92.208 308 10 2 229 522 600261224 600260917 2.400000e-114 424.0
54 TraesCS4D01G208200 chr6A 92.208 308 9 3 229 522 600126672 600126978 8.630000e-114 422.0
55 TraesCS4D01G208200 chr6A 91.531 307 11 9 230 522 332564764 332564459 6.720000e-110 409.0
56 TraesCS4D01G208200 chr6A 87.429 350 22 6 229 556 155252271 155251922 4.070000e-102 383.0
57 TraesCS4D01G208200 chr2A 79.479 614 105 13 231 825 118486781 118486170 4.010000e-112 416.0
58 TraesCS4D01G208200 chr2A 89.404 302 17 2 229 515 659153827 659154128 4.100000e-97 366.0
59 TraesCS4D01G208200 chr2A 88.889 99 9 1 4693 4791 535152546 535152450 3.520000e-23 121.0
60 TraesCS4D01G208200 chr2A 92.857 42 1 2 6539 6579 83044599 83044639 7.790000e-05 60.2
61 TraesCS4D01G208200 chr1D 91.830 306 11 1 231 522 103032233 103031928 1.440000e-111 414.0
62 TraesCS4D01G208200 chr1D 96.951 164 4 1 360 522 257065005 257064842 2.560000e-69 274.0
63 TraesCS4D01G208200 chr2D 88.889 306 11 7 231 522 204389765 204390061 8.870000e-94 355.0
64 TraesCS4D01G208200 chr2D 86.063 287 27 9 2268 2549 143486267 143486545 5.450000e-76 296.0
65 TraesCS4D01G208200 chr2D 82.490 257 21 4 2672 2904 180551685 180551429 3.400000e-48 204.0
66 TraesCS4D01G208200 chr2D 88.889 99 9 1 4693 4791 398064153 398064057 3.520000e-23 121.0
67 TraesCS4D01G208200 chr2D 88.710 62 6 1 6812 6872 615151070 615151009 2.780000e-09 75.0
68 TraesCS4D01G208200 chr5D 92.562 242 18 0 6950 7191 213006457 213006698 1.480000e-91 348.0
69 TraesCS4D01G208200 chr5D 93.162 234 16 0 6958 7191 546480295 546480528 1.920000e-90 344.0
70 TraesCS4D01G208200 chr5D 92.149 242 19 0 6950 7191 212926700 212926941 6.910000e-90 342.0
71 TraesCS4D01G208200 chr5D 91.736 242 20 0 6950 7191 212952134 212952375 3.210000e-88 337.0
72 TraesCS4D01G208200 chr5D 82.946 258 20 6 2671 2904 364299478 364299221 2.030000e-50 211.0
73 TraesCS4D01G208200 chr5D 79.923 259 26 13 2672 2904 193720303 193720561 4.460000e-37 167.0
74 TraesCS4D01G208200 chr5D 89.286 84 6 2 4950 5032 17139365 17139446 1.280000e-17 102.0
75 TraesCS4D01G208200 chr5D 91.111 45 2 2 6660 6704 344404401 344404443 7.790000e-05 60.2
76 TraesCS4D01G208200 chr3B 89.236 288 17 6 2268 2549 245927634 245927355 1.480000e-91 348.0
77 TraesCS4D01G208200 chr3B 87.455 279 22 9 2268 2541 763536432 763536702 7.010000e-80 309.0
78 TraesCS4D01G208200 chr3B 89.796 98 9 1 4694 4791 74281964 74281868 2.720000e-24 124.0
79 TraesCS4D01G208200 chr3D 92.887 239 16 1 6951 7189 374251240 374251477 5.340000e-91 346.0
80 TraesCS4D01G208200 chr1A 85.965 285 29 8 2271 2549 395188586 395188307 1.960000e-75 294.0
81 TraesCS4D01G208200 chr1A 84.028 288 35 8 2268 2549 395188790 395188508 4.280000e-67 267.0
82 TraesCS4D01G208200 chr7B 80.669 269 25 13 2662 2904 737670209 737669942 4.430000e-42 183.0
83 TraesCS4D01G208200 chr5B 84.426 122 18 1 6752 6872 700843896 700844017 1.270000e-22 119.0
84 TraesCS4D01G208200 chr6B 97.368 38 1 0 6544 6581 494088521 494088558 1.670000e-06 65.8
85 TraesCS4D01G208200 chr2B 92.683 41 1 2 6541 6581 247602652 247602690 2.800000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G208200 chr4D 358474438 358481628 7190 True 13280.000000 13280 100.00000 1 7191 1 chr4D.!!$R2 7190
1 TraesCS4D01G208200 chr4B 441675033 441681417 6384 True 3347.666667 7243 93.90700 88 6967 3 chr4B.!!$R1 6879
2 TraesCS4D01G208200 chr4A 106901568 106907951 6383 False 2475.250000 6288 95.62325 139 6872 4 chr4A.!!$F3 6733
3 TraesCS4D01G208200 chr7A 89642711 89643956 1245 True 564.500000 778 89.22800 3615 4563 2 chr7A.!!$R4 948
4 TraesCS4D01G208200 chr3A 151313257 151313869 612 False 745.000000 745 89.10600 231 825 1 chr3A.!!$F1 594
5 TraesCS4D01G208200 chr1B 503936551 503937064 513 True 466.000000 466 83.59100 235 735 1 chr1B.!!$R2 500
6 TraesCS4D01G208200 chr2A 118486170 118486781 611 True 416.000000 416 79.47900 231 825 1 chr2A.!!$R1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.550914 TGGGTGTGTGGCTCTTTTCT 59.449 50.000 0.00 0.00 0.00 2.52 F
524 540 0.609131 ATGAACCAAAGGAGGCCACG 60.609 55.000 5.01 0.00 0.00 4.94 F
538 557 1.452145 GCCACGCCTCTTTGGTTTGA 61.452 55.000 0.00 0.00 38.35 2.69 F
541 560 1.946768 CACGCCTCTTTGGTTTGAAGA 59.053 47.619 0.00 0.00 38.35 2.87 F
984 1005 1.997874 GGATCCAGAGGGTGTGGCT 60.998 63.158 6.95 0.00 34.77 4.75 F
2176 2206 0.253113 TGTGGTGGGGGAGATGATGA 60.253 55.000 0.00 0.00 0.00 2.92 F
3364 3561 0.040692 TCAGTCGTGTGTGTAGACGC 60.041 55.000 0.00 0.00 42.66 5.19 F
4278 4775 0.302890 CGCAGTCATGGATTTCGCTC 59.697 55.000 0.00 0.00 0.00 5.03 F
5254 5879 1.534163 CATGTGTCTGAACTGTGGCAG 59.466 52.381 0.00 4.97 37.52 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1201 0.038801 GAGCCACAGGAAAGCAAAGC 60.039 55.000 0.00 0.00 0.00 3.51 R
1510 1538 0.108041 CCAAATGGCAATCCACCAGC 60.108 55.000 0.00 0.00 46.92 4.85 R
2134 2164 1.104577 TTTTTCCTGGTGTGCCGGAC 61.105 55.000 5.05 0.46 43.97 4.79 R
2136 2166 1.659794 CTTTTTCCTGGTGTGCCGG 59.340 57.895 0.00 0.00 40.89 6.13 R
2715 2912 0.038983 TTCGTGCCGTGAAAGATCGA 60.039 50.000 0.00 0.00 0.00 3.59 R
3997 4487 1.745232 TTCTGTCCTGCAAAACACGT 58.255 45.000 0.00 0.00 0.00 4.49 R
4505 5005 1.689258 GGGCCACCCAGATTTTGCTAT 60.689 52.381 4.39 0.00 44.65 2.97 R
5627 6253 2.095466 TGCAAAAATAAGAAGACCCGCG 60.095 45.455 0.00 0.00 0.00 6.46 R
7003 7800 0.038618 TGTATGCTATAGGGCGTGCG 60.039 55.000 1.04 0.00 36.79 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.927782 TGCGTGGGTGTGTGGCTC 62.928 66.667 0.00 0.00 0.00 4.70
25 26 4.626081 GCGTGGGTGTGTGGCTCT 62.626 66.667 0.00 0.00 0.00 4.09
26 27 2.111043 CGTGGGTGTGTGGCTCTT 59.889 61.111 0.00 0.00 0.00 2.85
27 28 1.525995 CGTGGGTGTGTGGCTCTTT 60.526 57.895 0.00 0.00 0.00 2.52
28 29 1.101049 CGTGGGTGTGTGGCTCTTTT 61.101 55.000 0.00 0.00 0.00 2.27
29 30 0.668535 GTGGGTGTGTGGCTCTTTTC 59.331 55.000 0.00 0.00 0.00 2.29
30 31 0.550914 TGGGTGTGTGGCTCTTTTCT 59.449 50.000 0.00 0.00 0.00 2.52
31 32 1.064017 TGGGTGTGTGGCTCTTTTCTT 60.064 47.619 0.00 0.00 0.00 2.52
32 33 1.609072 GGGTGTGTGGCTCTTTTCTTC 59.391 52.381 0.00 0.00 0.00 2.87
33 34 2.576615 GGTGTGTGGCTCTTTTCTTCT 58.423 47.619 0.00 0.00 0.00 2.85
34 35 2.952310 GGTGTGTGGCTCTTTTCTTCTT 59.048 45.455 0.00 0.00 0.00 2.52
35 36 3.003793 GGTGTGTGGCTCTTTTCTTCTTC 59.996 47.826 0.00 0.00 0.00 2.87
36 37 3.879892 GTGTGTGGCTCTTTTCTTCTTCT 59.120 43.478 0.00 0.00 0.00 2.85
37 38 4.336713 GTGTGTGGCTCTTTTCTTCTTCTT 59.663 41.667 0.00 0.00 0.00 2.52
38 39 4.576463 TGTGTGGCTCTTTTCTTCTTCTTC 59.424 41.667 0.00 0.00 0.00 2.87
39 40 4.819088 GTGTGGCTCTTTTCTTCTTCTTCT 59.181 41.667 0.00 0.00 0.00 2.85
40 41 5.298026 GTGTGGCTCTTTTCTTCTTCTTCTT 59.702 40.000 0.00 0.00 0.00 2.52
41 42 5.888161 TGTGGCTCTTTTCTTCTTCTTCTTT 59.112 36.000 0.00 0.00 0.00 2.52
42 43 6.378280 TGTGGCTCTTTTCTTCTTCTTCTTTT 59.622 34.615 0.00 0.00 0.00 2.27
43 44 6.694844 GTGGCTCTTTTCTTCTTCTTCTTTTG 59.305 38.462 0.00 0.00 0.00 2.44
44 45 6.378280 TGGCTCTTTTCTTCTTCTTCTTTTGT 59.622 34.615 0.00 0.00 0.00 2.83
45 46 6.694844 GGCTCTTTTCTTCTTCTTCTTTTGTG 59.305 38.462 0.00 0.00 0.00 3.33
46 47 6.694844 GCTCTTTTCTTCTTCTTCTTTTGTGG 59.305 38.462 0.00 0.00 0.00 4.17
47 48 7.100458 TCTTTTCTTCTTCTTCTTTTGTGGG 57.900 36.000 0.00 0.00 0.00 4.61
48 49 4.918810 TTCTTCTTCTTCTTTTGTGGGC 57.081 40.909 0.00 0.00 0.00 5.36
49 50 4.170468 TCTTCTTCTTCTTTTGTGGGCT 57.830 40.909 0.00 0.00 0.00 5.19
50 51 4.536765 TCTTCTTCTTCTTTTGTGGGCTT 58.463 39.130 0.00 0.00 0.00 4.35
51 52 4.956075 TCTTCTTCTTCTTTTGTGGGCTTT 59.044 37.500 0.00 0.00 0.00 3.51
52 53 6.126409 TCTTCTTCTTCTTTTGTGGGCTTTA 58.874 36.000 0.00 0.00 0.00 1.85
53 54 6.777580 TCTTCTTCTTCTTTTGTGGGCTTTAT 59.222 34.615 0.00 0.00 0.00 1.40
54 55 6.976934 TCTTCTTCTTTTGTGGGCTTTATT 57.023 33.333 0.00 0.00 0.00 1.40
55 56 6.981722 TCTTCTTCTTTTGTGGGCTTTATTC 58.018 36.000 0.00 0.00 0.00 1.75
56 57 6.549364 TCTTCTTCTTTTGTGGGCTTTATTCA 59.451 34.615 0.00 0.00 0.00 2.57
57 58 6.723298 TCTTCTTTTGTGGGCTTTATTCAA 57.277 33.333 0.00 0.00 0.00 2.69
58 59 6.512297 TCTTCTTTTGTGGGCTTTATTCAAC 58.488 36.000 0.00 0.00 0.00 3.18
59 60 4.865776 TCTTTTGTGGGCTTTATTCAACG 58.134 39.130 0.00 0.00 0.00 4.10
60 61 3.651803 TTTGTGGGCTTTATTCAACGG 57.348 42.857 0.00 0.00 0.00 4.44
61 62 2.279935 TGTGGGCTTTATTCAACGGT 57.720 45.000 0.00 0.00 0.00 4.83
62 63 2.588620 TGTGGGCTTTATTCAACGGTT 58.411 42.857 0.00 0.00 0.00 4.44
63 64 2.294791 TGTGGGCTTTATTCAACGGTTG 59.705 45.455 14.62 14.62 0.00 3.77
64 65 1.889829 TGGGCTTTATTCAACGGTTGG 59.110 47.619 19.91 4.79 0.00 3.77
65 66 1.203758 GGGCTTTATTCAACGGTTGGG 59.796 52.381 19.91 5.95 0.00 4.12
66 67 2.164338 GGCTTTATTCAACGGTTGGGA 58.836 47.619 19.91 10.13 0.00 4.37
67 68 2.559231 GGCTTTATTCAACGGTTGGGAA 59.441 45.455 19.91 9.00 0.00 3.97
68 69 3.006003 GGCTTTATTCAACGGTTGGGAAA 59.994 43.478 19.91 15.21 0.00 3.13
69 70 3.985279 GCTTTATTCAACGGTTGGGAAAC 59.015 43.478 19.91 9.20 0.00 2.78
70 71 4.500035 GCTTTATTCAACGGTTGGGAAACA 60.500 41.667 19.91 0.00 0.00 2.83
71 72 5.593010 CTTTATTCAACGGTTGGGAAACAA 58.407 37.500 19.91 6.92 36.54 2.83
82 83 3.634568 TGGGAAACAACACAATTAGCG 57.365 42.857 0.00 0.00 0.00 4.26
83 84 2.287909 TGGGAAACAACACAATTAGCGC 60.288 45.455 0.00 0.00 0.00 5.92
84 85 2.287909 GGGAAACAACACAATTAGCGCA 60.288 45.455 11.47 0.00 0.00 6.09
85 86 2.724174 GGAAACAACACAATTAGCGCAC 59.276 45.455 11.47 0.00 0.00 5.34
86 87 3.367607 GAAACAACACAATTAGCGCACA 58.632 40.909 11.47 0.00 0.00 4.57
143 144 4.506255 GCCTAGCACCGCCCCATT 62.506 66.667 0.00 0.00 0.00 3.16
144 145 2.275418 CCTAGCACCGCCCCATTT 59.725 61.111 0.00 0.00 0.00 2.32
150 151 1.591183 CACCGCCCCATTTCTTTGG 59.409 57.895 0.00 0.00 36.46 3.28
153 154 3.376546 GCCCCATTTCTTTGGCGT 58.623 55.556 0.00 0.00 35.29 5.68
227 228 4.148825 CCCCCGCGAGTTCTCCAG 62.149 72.222 8.23 0.00 0.00 3.86
228 229 3.382832 CCCCGCGAGTTCTCCAGT 61.383 66.667 8.23 0.00 0.00 4.00
229 230 2.050350 CCCCGCGAGTTCTCCAGTA 61.050 63.158 8.23 0.00 0.00 2.74
443 459 8.058405 TCTCCTTTCCTATTCCTACTCATAGA 57.942 38.462 0.00 0.00 0.00 1.98
499 515 6.354938 ACTTTCCTATTCCTACGATTTTCCC 58.645 40.000 0.00 0.00 0.00 3.97
522 538 2.239654 CTCTATGAACCAAAGGAGGCCA 59.760 50.000 5.01 0.00 0.00 5.36
523 539 2.026262 TCTATGAACCAAAGGAGGCCAC 60.026 50.000 5.01 0.00 0.00 5.01
524 540 0.609131 ATGAACCAAAGGAGGCCACG 60.609 55.000 5.01 0.00 0.00 4.94
525 541 2.597510 AACCAAAGGAGGCCACGC 60.598 61.111 5.01 0.00 0.00 5.34
538 557 1.452145 GCCACGCCTCTTTGGTTTGA 61.452 55.000 0.00 0.00 38.35 2.69
541 560 1.946768 CACGCCTCTTTGGTTTGAAGA 59.053 47.619 0.00 0.00 38.35 2.87
547 566 5.175673 CGCCTCTTTGGTTTGAAGAAATTTC 59.824 40.000 10.33 10.33 38.35 2.17
616 636 5.669798 AGCCCTTTGGTTCATAGGAATAT 57.330 39.130 6.07 0.00 35.14 1.28
781 801 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
794 814 9.753674 TCATTTCCTACAAAATTCCTATTCTGT 57.246 29.630 0.00 0.00 0.00 3.41
795 815 9.793252 CATTTCCTACAAAATTCCTATTCTGTG 57.207 33.333 0.00 0.00 0.00 3.66
815 836 8.367660 TCTGTGATAATCCTATCCTATGAACC 57.632 38.462 0.00 0.00 34.10 3.62
825 846 2.985896 TCCTATGAACCAAAAGAGGCG 58.014 47.619 0.00 0.00 0.00 5.52
984 1005 1.997874 GGATCCAGAGGGTGTGGCT 60.998 63.158 6.95 0.00 34.77 4.75
1179 1200 4.996434 GCAGGTCAGTGCGTGCCT 62.996 66.667 16.38 5.58 42.39 4.75
1180 1201 3.046087 CAGGTCAGTGCGTGCCTG 61.046 66.667 11.98 11.98 41.26 4.85
1181 1202 4.996434 AGGTCAGTGCGTGCCTGC 62.996 66.667 5.72 0.00 33.06 4.85
1221 1246 6.294508 GCTCTTTTAGTGCAATTTTGACCCTA 60.295 38.462 0.00 0.00 35.03 3.53
1233 1258 2.047560 ACCCTACTTCGGTTGCGC 60.048 61.111 0.00 0.00 0.00 6.09
1477 1502 8.754991 TTATGTGTGTCTCCTTTTCCTTTTTA 57.245 30.769 0.00 0.00 0.00 1.52
1519 1547 2.267006 CTCAGTGCGCTGGTGGAT 59.733 61.111 26.23 0.00 42.78 3.41
1655 1683 6.350103 TGGCAATACCTGACATTTCGTTATA 58.650 36.000 0.00 0.00 38.54 0.98
1688 1716 5.426509 TGGAATTGTAGATCAGGACATCAGT 59.573 40.000 0.00 0.00 0.00 3.41
1738 1766 4.529897 TGTAGTTTATACTCGCCTCCTCA 58.470 43.478 0.00 0.00 35.78 3.86
1984 2014 6.194796 ACATATTTTTGCGATGCACTTACT 57.805 33.333 0.00 0.00 38.71 2.24
2015 2045 9.122779 TCTAAGCTCTATTTAGTCACTAAGGAC 57.877 37.037 0.00 0.00 38.08 3.85
2134 2164 7.500992 TGATCCTAACCTTGAGCTTATACTTG 58.499 38.462 0.00 0.00 0.00 3.16
2136 2166 6.875076 TCCTAACCTTGAGCTTATACTTGTC 58.125 40.000 0.00 0.00 0.00 3.18
2176 2206 0.253113 TGTGGTGGGGGAGATGATGA 60.253 55.000 0.00 0.00 0.00 2.92
2386 2575 1.546476 CGCGGAAAGAGAGGCCTATAT 59.454 52.381 4.42 0.00 0.00 0.86
2436 2625 6.949352 TTTTGGATAAATTGCAAAAGCCAA 57.051 29.167 19.53 19.53 46.66 4.52
2477 2666 3.031013 GGGCCATACCATGTTAAGCTTT 58.969 45.455 3.20 0.00 42.05 3.51
2668 2865 2.345876 TGATTGCGATCGCTCTTTTCA 58.654 42.857 37.01 26.74 42.51 2.69
2694 2891 2.182030 GGAGTGAACCTCGAGGCG 59.818 66.667 31.56 9.41 41.46 5.52
2715 2912 1.375523 GATCGGTCCGTTGTTGGCT 60.376 57.895 11.88 0.00 0.00 4.75
2765 2962 3.424962 GCAGCAGGTTTACGAAGATGTTC 60.425 47.826 0.00 0.00 0.00 3.18
2785 2982 0.741915 GCAAGTCCCACGGAAACAAA 59.258 50.000 0.00 0.00 31.38 2.83
2889 3086 5.645067 TGCCAGTAGAGATTTTGACAAGATG 59.355 40.000 0.00 0.00 0.00 2.90
3189 3386 7.328249 ACATAAATGAAAGTACCACAAAATGCG 59.672 33.333 0.00 0.00 0.00 4.73
3198 3395 6.870769 AGTACCACAAAATGCGTACTAGTAT 58.129 36.000 5.75 0.00 40.55 2.12
3202 3399 7.878036 ACCACAAAATGCGTACTAGTATTTTT 58.122 30.769 5.75 7.68 41.91 1.94
3241 3438 5.768980 TCCTTCTTGTCTTCCAGATCAAT 57.231 39.130 0.00 0.00 0.00 2.57
3364 3561 0.040692 TCAGTCGTGTGTGTAGACGC 60.041 55.000 0.00 0.00 42.66 5.19
3367 3564 2.253154 CGTGTGTGTAGACGCGGA 59.747 61.111 12.47 0.00 44.27 5.54
3368 3565 1.154093 CGTGTGTGTAGACGCGGAT 60.154 57.895 12.47 0.00 44.27 4.18
3377 3574 2.882137 TGTAGACGCGGATGTATCATCA 59.118 45.455 12.47 0.00 0.00 3.07
3393 3590 3.411446 TCATCATGGGTGTGTCAAAGTC 58.589 45.455 0.00 0.00 0.00 3.01
3521 3718 6.146347 TCAGGCTTTAAAACAACAACAACAAC 59.854 34.615 0.00 0.00 0.00 3.32
3523 3720 6.483640 AGGCTTTAAAACAACAACAACAACAA 59.516 30.769 0.00 0.00 0.00 2.83
3524 3721 6.575572 GGCTTTAAAACAACAACAACAACAAC 59.424 34.615 0.00 0.00 0.00 3.32
3525 3722 7.126398 GCTTTAAAACAACAACAACAACAACA 58.874 30.769 0.00 0.00 0.00 3.33
3526 3723 7.640240 GCTTTAAAACAACAACAACAACAACAA 59.360 29.630 0.00 0.00 0.00 2.83
3527 3724 8.822105 TTTAAAACAACAACAACAACAACAAC 57.178 26.923 0.00 0.00 0.00 3.32
3610 3807 4.853276 TCTGGGATTAGGGGTTTAGTTTGA 59.147 41.667 0.00 0.00 0.00 2.69
4278 4775 0.302890 CGCAGTCATGGATTTCGCTC 59.697 55.000 0.00 0.00 0.00 5.03
4449 4949 4.518970 TGTTCCTTGCATGAAAGGTCTTAC 59.481 41.667 28.60 21.36 45.94 2.34
4455 4955 6.403866 TTGCATGAAAGGTCTTACACATTT 57.596 33.333 0.00 0.00 41.70 2.32
4497 4997 4.261405 CCAAACGTAGAACATGGAAAGCAA 60.261 41.667 0.00 0.00 32.82 3.91
4498 4998 5.277825 CAAACGTAGAACATGGAAAGCAAA 58.722 37.500 0.00 0.00 0.00 3.68
4600 5102 8.087750 CCCAAAACTTTTGCATCAAACTAGATA 58.912 33.333 8.53 0.00 32.79 1.98
4992 5617 7.976414 TCCCCTATGATTCATTTGTTTGATT 57.024 32.000 4.14 0.00 0.00 2.57
5117 5742 3.161067 CTCTTCTCAGTCCTCCAAGTGA 58.839 50.000 0.00 0.00 0.00 3.41
5167 5792 4.142381 GGAAGCCACATTGACCATAGTTTC 60.142 45.833 0.00 0.00 0.00 2.78
5201 5826 5.754782 ACCATTTACCTCTGCACATGAATA 58.245 37.500 0.00 0.00 0.00 1.75
5254 5879 1.534163 CATGTGTCTGAACTGTGGCAG 59.466 52.381 0.00 4.97 37.52 4.85
5353 5978 5.701290 GGATAGAATTGAGGGTAATGGTTCG 59.299 44.000 0.00 0.00 0.00 3.95
5413 6038 9.426837 GGAACACAAATAATGTACTGTACACTA 57.573 33.333 21.84 16.29 41.46 2.74
5440 6065 7.974501 CAGAGGTTTACAACTAGTGATATTCGT 59.025 37.037 0.00 0.00 0.00 3.85
5603 6228 3.128589 TGGCCGCTTTTTCTATGATTGAC 59.871 43.478 0.00 0.00 0.00 3.18
5627 6253 6.595716 ACCAAGTGTCTTAAATATGTCAGCTC 59.404 38.462 0.00 0.00 0.00 4.09
5648 6274 2.095466 CGCGGGTCTTCTTATTTTTGCA 60.095 45.455 0.00 0.00 0.00 4.08
5718 6484 2.568956 TGCTGTGAGCCTTTGTCTAGAT 59.431 45.455 0.00 0.00 41.51 1.98
6036 6803 8.502105 GTGCTTTACCAGTATAAACATTACCT 57.498 34.615 0.00 0.00 0.00 3.08
6067 6834 8.592105 TGATTAATTCCTCTTGTTGCTTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
6072 6839 7.719778 ATTCCTCTTGTTGCTTTTTGAATTC 57.280 32.000 0.00 0.00 0.00 2.17
6329 7097 1.069823 CTGTGGCAGTTCAGAGTCTGT 59.930 52.381 19.53 0.00 34.02 3.41
6418 7186 2.727607 GCGTCGCTGCAAATGTGATTTA 60.728 45.455 10.68 0.00 34.15 1.40
6613 7381 2.239150 TGCATAATTTTTGCTGCCCCAT 59.761 40.909 12.12 0.00 40.77 4.00
6649 7417 1.547372 GGCAATGCACTGGAAACTGAT 59.453 47.619 7.79 0.00 0.00 2.90
6725 7495 3.515602 ATCTGTTTCAAGTGAGGCCTT 57.484 42.857 6.77 0.00 0.00 4.35
6745 7515 5.988561 GCCTTATTGTCTATCAGGAACAGAG 59.011 44.000 0.00 0.00 30.33 3.35
6803 7584 6.627087 TGATGAGAGACAGGGAGTTTATTT 57.373 37.500 0.00 0.00 0.00 1.40
6838 7620 9.693739 TTGATTAGGATTAAAATAGAGTTGCCA 57.306 29.630 0.00 0.00 0.00 4.92
6872 7654 8.229137 GGCAAACTATAGTCGTATAGAGTGTAG 58.771 40.741 5.70 5.56 44.63 2.74
6873 7655 8.229137 GCAAACTATAGTCGTATAGAGTGTAGG 58.771 40.741 5.70 0.00 43.89 3.18
6874 7656 9.486497 CAAACTATAGTCGTATAGAGTGTAGGA 57.514 37.037 5.70 0.00 43.89 2.94
6875 7657 9.487790 AAACTATAGTCGTATAGAGTGTAGGAC 57.512 37.037 5.70 0.00 43.89 3.85
6876 7658 7.610865 ACTATAGTCGTATAGAGTGTAGGACC 58.389 42.308 0.00 0.00 43.89 4.46
6878 7660 5.307544 AGTCGTATAGAGTGTAGGACCAT 57.692 43.478 0.00 0.00 37.55 3.55
6879 7661 5.307204 AGTCGTATAGAGTGTAGGACCATC 58.693 45.833 0.00 0.00 37.55 3.51
6882 7664 4.083961 CGTATAGAGTGTAGGACCATCACG 60.084 50.000 11.55 0.00 37.20 4.35
6883 7665 2.217510 AGAGTGTAGGACCATCACGT 57.782 50.000 11.55 0.00 37.20 4.49
6884 7666 3.361281 AGAGTGTAGGACCATCACGTA 57.639 47.619 11.55 0.00 37.20 3.57
6885 7667 3.899726 AGAGTGTAGGACCATCACGTAT 58.100 45.455 11.55 2.40 37.20 3.06
6886 7668 4.279145 AGAGTGTAGGACCATCACGTATT 58.721 43.478 11.55 0.00 37.20 1.89
6887 7669 4.098044 AGAGTGTAGGACCATCACGTATTG 59.902 45.833 11.55 0.00 37.20 1.90
6893 7681 3.322254 AGGACCATCACGTATTGAGGATC 59.678 47.826 0.00 0.00 38.35 3.36
6899 7687 5.586243 CCATCACGTATTGAGGATCTTTTGT 59.414 40.000 0.00 0.00 38.35 2.83
6905 7693 5.457148 CGTATTGAGGATCTTTTGTCTCTCG 59.543 44.000 0.00 0.00 34.92 4.04
6906 7694 5.667539 ATTGAGGATCTTTTGTCTCTCGA 57.332 39.130 0.00 0.00 34.92 4.04
6912 7700 5.124776 AGGATCTTTTGTCTCTCGACTGTAG 59.875 44.000 0.00 0.00 40.86 2.74
6920 7708 3.305094 GTCTCTCGACTGTAGTTCTCTCG 59.695 52.174 0.00 0.00 37.19 4.04
6921 7709 2.605818 CTCTCGACTGTAGTTCTCTCGG 59.394 54.545 0.00 0.00 0.00 4.63
6944 7741 0.605589 AAAACTCCTTTCCCCTCGCG 60.606 55.000 0.00 0.00 0.00 5.87
6949 7746 2.690778 CCTTTCCCCTCGCGCAAAG 61.691 63.158 8.75 8.46 0.00 2.77
6951 7748 1.228003 TTTCCCCTCGCGCAAAGAA 60.228 52.632 8.75 0.00 0.00 2.52
6973 7770 1.145803 AAGAAGGACAACGCTAACGC 58.854 50.000 0.00 0.00 45.53 4.84
6974 7771 0.317479 AGAAGGACAACGCTAACGCT 59.683 50.000 0.00 0.00 45.53 5.07
6975 7772 0.714439 GAAGGACAACGCTAACGCTC 59.286 55.000 0.00 0.00 45.53 5.03
6976 7773 0.032952 AAGGACAACGCTAACGCTCA 59.967 50.000 0.00 0.00 45.53 4.26
6977 7774 0.666577 AGGACAACGCTAACGCTCAC 60.667 55.000 0.00 0.00 45.53 3.51
6978 7775 0.942410 GGACAACGCTAACGCTCACA 60.942 55.000 0.00 0.00 45.53 3.58
6979 7776 0.161024 GACAACGCTAACGCTCACAC 59.839 55.000 0.00 0.00 45.53 3.82
6980 7777 1.127817 CAACGCTAACGCTCACACG 59.872 57.895 0.00 0.00 45.53 4.49
6994 7791 3.056458 CACGTGTGGTGGGAGCTA 58.944 61.111 7.58 0.00 43.16 3.32
6995 7792 1.369692 CACGTGTGGTGGGAGCTAA 59.630 57.895 7.58 0.00 43.16 3.09
6996 7793 0.250124 CACGTGTGGTGGGAGCTAAA 60.250 55.000 7.58 0.00 43.16 1.85
6997 7794 0.690762 ACGTGTGGTGGGAGCTAAAT 59.309 50.000 0.00 0.00 0.00 1.40
6998 7795 1.073284 ACGTGTGGTGGGAGCTAAATT 59.927 47.619 0.00 0.00 0.00 1.82
6999 7796 1.737793 CGTGTGGTGGGAGCTAAATTC 59.262 52.381 0.00 0.00 0.00 2.17
7000 7797 1.737793 GTGTGGTGGGAGCTAAATTCG 59.262 52.381 0.00 0.00 0.00 3.34
7001 7798 0.733150 GTGGTGGGAGCTAAATTCGC 59.267 55.000 0.00 0.00 0.00 4.70
7002 7799 0.618458 TGGTGGGAGCTAAATTCGCT 59.382 50.000 2.18 2.18 41.15 4.93
7007 7804 3.788874 GAGCTAAATTCGCTCGCAC 57.211 52.632 12.25 0.00 43.69 5.34
7008 7805 0.043822 GAGCTAAATTCGCTCGCACG 60.044 55.000 12.25 0.00 43.69 5.34
7009 7806 1.648460 GCTAAATTCGCTCGCACGC 60.648 57.895 0.00 0.00 0.00 5.34
7010 7807 1.012234 CTAAATTCGCTCGCACGCC 60.012 57.895 0.00 0.00 0.00 5.68
7011 7808 2.361427 CTAAATTCGCTCGCACGCCC 62.361 60.000 0.00 0.00 0.00 6.13
7012 7809 2.845752 TAAATTCGCTCGCACGCCCT 62.846 55.000 0.00 0.00 0.00 5.19
7013 7810 2.845752 AAATTCGCTCGCACGCCCTA 62.846 55.000 0.00 0.00 0.00 3.53
7014 7811 2.644555 AATTCGCTCGCACGCCCTAT 62.645 55.000 0.00 0.00 0.00 2.57
7015 7812 1.802337 ATTCGCTCGCACGCCCTATA 61.802 55.000 0.00 0.00 0.00 1.31
7016 7813 2.402282 TTCGCTCGCACGCCCTATAG 62.402 60.000 0.00 0.00 0.00 1.31
7017 7814 2.735100 GCTCGCACGCCCTATAGC 60.735 66.667 0.00 0.00 0.00 2.97
7018 7815 2.728180 CTCGCACGCCCTATAGCA 59.272 61.111 0.00 0.00 0.00 3.49
7019 7816 1.290324 CTCGCACGCCCTATAGCAT 59.710 57.895 0.00 0.00 0.00 3.79
7020 7817 0.526211 CTCGCACGCCCTATAGCATA 59.474 55.000 0.00 0.00 0.00 3.14
7021 7818 0.242825 TCGCACGCCCTATAGCATAC 59.757 55.000 0.00 0.00 0.00 2.39
7022 7819 0.038618 CGCACGCCCTATAGCATACA 60.039 55.000 0.00 0.00 0.00 2.29
7023 7820 1.604438 CGCACGCCCTATAGCATACAA 60.604 52.381 0.00 0.00 0.00 2.41
7024 7821 2.489971 GCACGCCCTATAGCATACAAA 58.510 47.619 0.00 0.00 0.00 2.83
7025 7822 2.223377 GCACGCCCTATAGCATACAAAC 59.777 50.000 0.00 0.00 0.00 2.93
7026 7823 3.728845 CACGCCCTATAGCATACAAACT 58.271 45.455 0.00 0.00 0.00 2.66
7027 7824 4.798263 GCACGCCCTATAGCATACAAACTA 60.798 45.833 0.00 0.00 0.00 2.24
7028 7825 4.684703 CACGCCCTATAGCATACAAACTAC 59.315 45.833 0.00 0.00 0.00 2.73
7029 7826 3.918591 CGCCCTATAGCATACAAACTACG 59.081 47.826 0.00 0.00 0.00 3.51
7030 7827 3.678548 GCCCTATAGCATACAAACTACGC 59.321 47.826 0.00 0.00 0.00 4.42
7031 7828 4.243270 CCCTATAGCATACAAACTACGCC 58.757 47.826 0.00 0.00 0.00 5.68
7032 7829 4.262292 CCCTATAGCATACAAACTACGCCA 60.262 45.833 0.00 0.00 0.00 5.69
7033 7830 5.479306 CCTATAGCATACAAACTACGCCAT 58.521 41.667 0.00 0.00 0.00 4.40
7034 7831 5.348724 CCTATAGCATACAAACTACGCCATG 59.651 44.000 0.00 0.00 0.00 3.66
7035 7832 2.985896 AGCATACAAACTACGCCATGT 58.014 42.857 0.00 0.00 0.00 3.21
7036 7833 2.936498 AGCATACAAACTACGCCATGTC 59.064 45.455 0.00 0.00 0.00 3.06
7037 7834 2.675844 GCATACAAACTACGCCATGTCA 59.324 45.455 0.00 0.00 0.00 3.58
7038 7835 3.485216 GCATACAAACTACGCCATGTCAC 60.485 47.826 0.00 0.00 0.00 3.67
7039 7836 1.519408 ACAAACTACGCCATGTCACC 58.481 50.000 0.00 0.00 0.00 4.02
7040 7837 0.442310 CAAACTACGCCATGTCACCG 59.558 55.000 0.00 0.00 0.00 4.94
7041 7838 1.296056 AAACTACGCCATGTCACCGC 61.296 55.000 0.00 0.00 0.00 5.68
7042 7839 2.125713 CTACGCCATGTCACCGCA 60.126 61.111 0.00 0.00 0.00 5.69
7043 7840 1.521457 CTACGCCATGTCACCGCAT 60.521 57.895 0.00 0.00 0.00 4.73
7044 7841 1.765161 CTACGCCATGTCACCGCATG 61.765 60.000 0.00 0.00 44.18 4.06
7045 7842 2.514510 TACGCCATGTCACCGCATGT 62.515 55.000 0.00 0.00 43.33 3.21
7046 7843 1.813337 CGCCATGTCACCGCATGTA 60.813 57.895 0.00 0.00 43.33 2.29
7047 7844 1.159713 CGCCATGTCACCGCATGTAT 61.160 55.000 0.00 0.00 43.33 2.29
7048 7845 0.308684 GCCATGTCACCGCATGTATG 59.691 55.000 0.00 0.00 43.33 2.39
7065 7862 7.894376 CATGTATGCATCTGAAAACCTTTTT 57.106 32.000 0.19 0.00 31.99 1.94
7066 7863 7.735500 CATGTATGCATCTGAAAACCTTTTTG 58.264 34.615 0.19 0.00 31.99 2.44
7067 7864 6.222389 TGTATGCATCTGAAAACCTTTTTGG 58.778 36.000 0.19 0.00 42.93 3.28
7068 7865 5.549742 ATGCATCTGAAAACCTTTTTGGA 57.450 34.783 0.00 0.00 39.71 3.53
7069 7866 5.549742 TGCATCTGAAAACCTTTTTGGAT 57.450 34.783 0.00 0.00 39.71 3.41
7070 7867 5.927819 TGCATCTGAAAACCTTTTTGGATT 58.072 33.333 0.00 0.00 39.71 3.01
7071 7868 6.355747 TGCATCTGAAAACCTTTTTGGATTT 58.644 32.000 0.00 0.00 42.46 2.17
7072 7869 6.827762 TGCATCTGAAAACCTTTTTGGATTTT 59.172 30.769 0.00 0.00 40.31 1.82
7073 7870 7.012232 TGCATCTGAAAACCTTTTTGGATTTTC 59.988 33.333 0.00 0.00 40.31 2.29
7074 7871 7.227314 GCATCTGAAAACCTTTTTGGATTTTCT 59.773 33.333 15.84 3.11 40.31 2.52
7075 7872 8.553696 CATCTGAAAACCTTTTTGGATTTTCTG 58.446 33.333 15.84 15.30 40.31 3.02
7076 7873 7.619965 TCTGAAAACCTTTTTGGATTTTCTGT 58.380 30.769 15.84 0.00 40.31 3.41
7077 7874 8.100164 TCTGAAAACCTTTTTGGATTTTCTGTT 58.900 29.630 15.84 0.00 40.31 3.16
7078 7875 8.628630 TGAAAACCTTTTTGGATTTTCTGTTT 57.371 26.923 15.84 0.00 40.31 2.83
7079 7876 9.072375 TGAAAACCTTTTTGGATTTTCTGTTTT 57.928 25.926 15.84 0.00 40.31 2.43
7080 7877 9.906660 GAAAACCTTTTTGGATTTTCTGTTTTT 57.093 25.926 0.00 0.00 40.31 1.94
7122 7919 9.801873 TTAAATGAAAAATCCGATTGAAGATCC 57.198 29.630 0.00 0.00 0.00 3.36
7123 7920 5.484173 TGAAAAATCCGATTGAAGATCCG 57.516 39.130 0.00 0.00 0.00 4.18
7124 7921 4.941263 TGAAAAATCCGATTGAAGATCCGT 59.059 37.500 0.00 0.00 0.00 4.69
7125 7922 5.414454 TGAAAAATCCGATTGAAGATCCGTT 59.586 36.000 0.00 0.00 0.00 4.44
7126 7923 5.897377 AAAATCCGATTGAAGATCCGTTT 57.103 34.783 0.00 0.00 0.00 3.60
7127 7924 5.897377 AAATCCGATTGAAGATCCGTTTT 57.103 34.783 0.00 0.00 0.00 2.43
7128 7925 5.485662 AATCCGATTGAAGATCCGTTTTC 57.514 39.130 0.00 0.00 0.00 2.29
7129 7926 3.932822 TCCGATTGAAGATCCGTTTTCA 58.067 40.909 0.00 0.00 0.00 2.69
7130 7927 4.513442 TCCGATTGAAGATCCGTTTTCAT 58.487 39.130 0.00 0.00 33.68 2.57
7131 7928 4.570772 TCCGATTGAAGATCCGTTTTCATC 59.429 41.667 0.00 0.00 33.68 2.92
7132 7929 4.332543 CCGATTGAAGATCCGTTTTCATCA 59.667 41.667 0.00 0.00 33.68 3.07
7133 7930 5.008019 CCGATTGAAGATCCGTTTTCATCAT 59.992 40.000 0.00 0.00 33.68 2.45
7134 7931 6.458751 CCGATTGAAGATCCGTTTTCATCATT 60.459 38.462 0.00 0.00 33.68 2.57
7135 7932 7.254761 CCGATTGAAGATCCGTTTTCATCATTA 60.255 37.037 0.00 0.00 33.68 1.90
7136 7933 8.122330 CGATTGAAGATCCGTTTTCATCATTAA 58.878 33.333 0.00 0.00 33.68 1.40
7137 7934 9.787532 GATTGAAGATCCGTTTTCATCATTAAA 57.212 29.630 0.00 0.00 33.68 1.52
7139 7936 9.787532 TTGAAGATCCGTTTTCATCATTAAATC 57.212 29.630 0.00 0.00 33.68 2.17
7140 7937 8.405531 TGAAGATCCGTTTTCATCATTAAATCC 58.594 33.333 0.00 0.00 0.00 3.01
7141 7938 7.277174 AGATCCGTTTTCATCATTAAATCCC 57.723 36.000 0.00 0.00 0.00 3.85
7142 7939 7.062957 AGATCCGTTTTCATCATTAAATCCCT 58.937 34.615 0.00 0.00 0.00 4.20
7143 7940 6.693315 TCCGTTTTCATCATTAAATCCCTC 57.307 37.500 0.00 0.00 0.00 4.30
7144 7941 5.295787 TCCGTTTTCATCATTAAATCCCTCG 59.704 40.000 0.00 0.00 0.00 4.63
7145 7942 4.970003 CGTTTTCATCATTAAATCCCTCGC 59.030 41.667 0.00 0.00 0.00 5.03
7146 7943 4.811555 TTTCATCATTAAATCCCTCGCG 57.188 40.909 0.00 0.00 0.00 5.87
7147 7944 3.744238 TCATCATTAAATCCCTCGCGA 57.256 42.857 9.26 9.26 0.00 5.87
7148 7945 3.390135 TCATCATTAAATCCCTCGCGAC 58.610 45.455 3.71 0.00 0.00 5.19
7149 7946 1.847818 TCATTAAATCCCTCGCGACG 58.152 50.000 3.71 0.04 0.00 5.12
7150 7947 1.406180 TCATTAAATCCCTCGCGACGA 59.594 47.619 3.71 3.75 0.00 4.20
7161 7958 2.341318 TCGCGACGAGATCTTTGAAA 57.659 45.000 3.71 0.00 0.00 2.69
7162 7959 1.983605 TCGCGACGAGATCTTTGAAAC 59.016 47.619 3.71 0.00 0.00 2.78
7163 7960 1.986378 CGCGACGAGATCTTTGAAACT 59.014 47.619 0.00 0.00 0.00 2.66
7164 7961 3.120095 TCGCGACGAGATCTTTGAAACTA 60.120 43.478 3.71 0.00 0.00 2.24
7165 7962 3.238570 CGCGACGAGATCTTTGAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
7166 7963 4.413087 GCGACGAGATCTTTGAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
7167 7964 5.038033 GCGACGAGATCTTTGAAACTAGAT 58.962 41.667 0.00 0.00 33.92 1.98
7168 7965 5.172411 GCGACGAGATCTTTGAAACTAGATC 59.828 44.000 0.00 0.00 44.54 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.927782 GAGCCACACACCCACGCA 62.928 66.667 0.00 0.00 0.00 5.24
8 9 4.626081 AGAGCCACACACCCACGC 62.626 66.667 0.00 0.00 0.00 5.34
9 10 1.101049 AAAAGAGCCACACACCCACG 61.101 55.000 0.00 0.00 0.00 4.94
10 11 0.668535 GAAAAGAGCCACACACCCAC 59.331 55.000 0.00 0.00 0.00 4.61
11 12 0.550914 AGAAAAGAGCCACACACCCA 59.449 50.000 0.00 0.00 0.00 4.51
12 13 1.609072 GAAGAAAAGAGCCACACACCC 59.391 52.381 0.00 0.00 0.00 4.61
13 14 2.576615 AGAAGAAAAGAGCCACACACC 58.423 47.619 0.00 0.00 0.00 4.16
14 15 3.879892 AGAAGAAGAAAAGAGCCACACAC 59.120 43.478 0.00 0.00 0.00 3.82
15 16 4.156455 AGAAGAAGAAAAGAGCCACACA 57.844 40.909 0.00 0.00 0.00 3.72
16 17 4.819088 AGAAGAAGAAGAAAAGAGCCACAC 59.181 41.667 0.00 0.00 0.00 3.82
17 18 5.041191 AGAAGAAGAAGAAAAGAGCCACA 57.959 39.130 0.00 0.00 0.00 4.17
18 19 6.384258 AAAGAAGAAGAAGAAAAGAGCCAC 57.616 37.500 0.00 0.00 0.00 5.01
19 20 6.378280 ACAAAAGAAGAAGAAGAAAAGAGCCA 59.622 34.615 0.00 0.00 0.00 4.75
20 21 6.694844 CACAAAAGAAGAAGAAGAAAAGAGCC 59.305 38.462 0.00 0.00 0.00 4.70
21 22 6.694844 CCACAAAAGAAGAAGAAGAAAAGAGC 59.305 38.462 0.00 0.00 0.00 4.09
22 23 7.199078 CCCACAAAAGAAGAAGAAGAAAAGAG 58.801 38.462 0.00 0.00 0.00 2.85
23 24 6.405842 GCCCACAAAAGAAGAAGAAGAAAAGA 60.406 38.462 0.00 0.00 0.00 2.52
24 25 5.750547 GCCCACAAAAGAAGAAGAAGAAAAG 59.249 40.000 0.00 0.00 0.00 2.27
25 26 5.422012 AGCCCACAAAAGAAGAAGAAGAAAA 59.578 36.000 0.00 0.00 0.00 2.29
26 27 4.956075 AGCCCACAAAAGAAGAAGAAGAAA 59.044 37.500 0.00 0.00 0.00 2.52
27 28 4.536765 AGCCCACAAAAGAAGAAGAAGAA 58.463 39.130 0.00 0.00 0.00 2.52
28 29 4.170468 AGCCCACAAAAGAAGAAGAAGA 57.830 40.909 0.00 0.00 0.00 2.87
29 30 4.926140 AAGCCCACAAAAGAAGAAGAAG 57.074 40.909 0.00 0.00 0.00 2.85
30 31 6.976934 ATAAAGCCCACAAAAGAAGAAGAA 57.023 33.333 0.00 0.00 0.00 2.52
31 32 6.549364 TGAATAAAGCCCACAAAAGAAGAAGA 59.451 34.615 0.00 0.00 0.00 2.87
32 33 6.748132 TGAATAAAGCCCACAAAAGAAGAAG 58.252 36.000 0.00 0.00 0.00 2.85
33 34 6.723298 TGAATAAAGCCCACAAAAGAAGAA 57.277 33.333 0.00 0.00 0.00 2.52
34 35 6.512297 GTTGAATAAAGCCCACAAAAGAAGA 58.488 36.000 0.00 0.00 0.00 2.87
35 36 5.402270 CGTTGAATAAAGCCCACAAAAGAAG 59.598 40.000 0.00 0.00 0.00 2.85
36 37 5.285651 CGTTGAATAAAGCCCACAAAAGAA 58.714 37.500 0.00 0.00 0.00 2.52
37 38 4.261825 CCGTTGAATAAAGCCCACAAAAGA 60.262 41.667 0.00 0.00 0.00 2.52
38 39 3.987220 CCGTTGAATAAAGCCCACAAAAG 59.013 43.478 0.00 0.00 0.00 2.27
39 40 3.385111 ACCGTTGAATAAAGCCCACAAAA 59.615 39.130 0.00 0.00 0.00 2.44
40 41 2.959707 ACCGTTGAATAAAGCCCACAAA 59.040 40.909 0.00 0.00 0.00 2.83
41 42 2.588620 ACCGTTGAATAAAGCCCACAA 58.411 42.857 0.00 0.00 0.00 3.33
42 43 2.279935 ACCGTTGAATAAAGCCCACA 57.720 45.000 0.00 0.00 0.00 4.17
43 44 2.352323 CCAACCGTTGAATAAAGCCCAC 60.352 50.000 13.04 0.00 0.00 4.61
44 45 1.889829 CCAACCGTTGAATAAAGCCCA 59.110 47.619 13.04 0.00 0.00 5.36
45 46 1.203758 CCCAACCGTTGAATAAAGCCC 59.796 52.381 13.04 0.00 0.00 5.19
46 47 2.164338 TCCCAACCGTTGAATAAAGCC 58.836 47.619 13.04 0.00 0.00 4.35
47 48 3.926821 TTCCCAACCGTTGAATAAAGC 57.073 42.857 13.04 0.00 0.00 3.51
48 49 5.189659 TGTTTCCCAACCGTTGAATAAAG 57.810 39.130 13.04 0.00 31.02 1.85
49 50 5.349809 GTTGTTTCCCAACCGTTGAATAAA 58.650 37.500 13.04 7.08 46.39 1.40
50 51 4.934515 GTTGTTTCCCAACCGTTGAATAA 58.065 39.130 13.04 1.66 46.39 1.40
51 52 4.571372 GTTGTTTCCCAACCGTTGAATA 57.429 40.909 13.04 0.00 46.39 1.75
52 53 3.446310 GTTGTTTCCCAACCGTTGAAT 57.554 42.857 13.04 0.00 46.39 2.57
53 54 2.943449 GTTGTTTCCCAACCGTTGAA 57.057 45.000 13.04 0.00 46.39 2.69
61 62 3.797184 GCGCTAATTGTGTTGTTTCCCAA 60.797 43.478 0.00 0.00 0.00 4.12
62 63 2.287909 GCGCTAATTGTGTTGTTTCCCA 60.288 45.455 0.00 0.00 0.00 4.37
63 64 2.287909 TGCGCTAATTGTGTTGTTTCCC 60.288 45.455 9.73 0.00 0.00 3.97
64 65 2.724174 GTGCGCTAATTGTGTTGTTTCC 59.276 45.455 9.73 0.00 0.00 3.13
65 66 3.367607 TGTGCGCTAATTGTGTTGTTTC 58.632 40.909 9.73 0.00 0.00 2.78
66 67 3.371168 CTGTGCGCTAATTGTGTTGTTT 58.629 40.909 9.73 0.00 0.00 2.83
67 68 2.287547 CCTGTGCGCTAATTGTGTTGTT 60.288 45.455 9.73 0.00 0.00 2.83
68 69 1.266718 CCTGTGCGCTAATTGTGTTGT 59.733 47.619 9.73 0.00 0.00 3.32
69 70 1.535028 TCCTGTGCGCTAATTGTGTTG 59.465 47.619 9.73 0.00 0.00 3.33
70 71 1.890876 TCCTGTGCGCTAATTGTGTT 58.109 45.000 9.73 0.00 0.00 3.32
71 72 1.739466 CATCCTGTGCGCTAATTGTGT 59.261 47.619 9.73 0.00 0.00 3.72
72 73 1.532505 GCATCCTGTGCGCTAATTGTG 60.533 52.381 9.73 2.37 45.23 3.33
73 74 0.734889 GCATCCTGTGCGCTAATTGT 59.265 50.000 9.73 0.00 45.23 2.71
74 75 3.539253 GCATCCTGTGCGCTAATTG 57.461 52.632 9.73 0.00 45.23 2.32
83 84 3.190849 CGCCAGTCGCATCCTGTG 61.191 66.667 0.00 0.00 37.30 3.66
84 85 4.457496 CCGCCAGTCGCATCCTGT 62.457 66.667 0.00 0.00 37.30 4.00
140 141 2.138596 AGCAACACGCCAAAGAAATG 57.861 45.000 0.00 0.00 44.04 2.32
141 142 2.884639 ACTAGCAACACGCCAAAGAAAT 59.115 40.909 0.00 0.00 44.04 2.17
143 144 1.961793 ACTAGCAACACGCCAAAGAA 58.038 45.000 0.00 0.00 44.04 2.52
144 145 1.601903 CAACTAGCAACACGCCAAAGA 59.398 47.619 0.00 0.00 44.04 2.52
150 151 0.307760 AGCAACAACTAGCAACACGC 59.692 50.000 0.00 0.00 42.91 5.34
153 154 2.357637 GGAACAGCAACAACTAGCAACA 59.642 45.455 0.00 0.00 0.00 3.33
227 228 4.262617 CTCTAAACCAAAGGAGGCCTTAC 58.737 47.826 6.77 2.89 43.92 2.34
228 229 3.265995 CCTCTAAACCAAAGGAGGCCTTA 59.734 47.826 6.77 0.00 43.92 2.69
304 305 3.399644 TCCATTCCTACAAACCAAAGGGA 59.600 43.478 0.00 0.00 38.05 4.20
499 515 3.274288 GCCTCCTTTGGTTCATAGAGTG 58.726 50.000 0.00 0.00 0.00 3.51
522 538 2.341846 TCTTCAAACCAAAGAGGCGT 57.658 45.000 0.00 0.00 43.14 5.68
523 539 3.708563 TTTCTTCAAACCAAAGAGGCG 57.291 42.857 0.00 0.00 43.14 5.52
524 540 6.048509 TGAAATTTCTTCAAACCAAAGAGGC 58.951 36.000 18.64 0.00 43.14 4.70
525 541 9.415544 CTATGAAATTTCTTCAAACCAAAGAGG 57.584 33.333 18.64 0.00 34.42 3.69
526 542 9.415544 CCTATGAAATTTCTTCAAACCAAAGAG 57.584 33.333 18.64 1.86 34.42 2.85
547 566 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
593 613 3.825908 TTCCTATGAACCAAAGGGCTT 57.174 42.857 0.00 0.00 37.90 4.35
792 812 8.504811 TTGGTTCATAGGATAGGATTATCACA 57.495 34.615 0.00 0.00 37.92 3.58
793 813 9.793259 TTTTGGTTCATAGGATAGGATTATCAC 57.207 33.333 0.00 0.00 37.92 3.06
825 846 1.140816 GAGATGCGGGCGAATCTTAC 58.859 55.000 0.00 0.00 40.44 2.34
879 900 1.590259 GCGAGACCTCCGATCTTGC 60.590 63.158 0.00 0.00 44.35 4.01
984 1005 0.679960 TCATCGCCGAGAACTCCTCA 60.680 55.000 0.00 0.00 42.06 3.86
1178 1199 0.319297 GCCACAGGAAAGCAAAGCAG 60.319 55.000 0.00 0.00 0.00 4.24
1179 1200 0.756442 AGCCACAGGAAAGCAAAGCA 60.756 50.000 0.00 0.00 0.00 3.91
1180 1201 0.038801 GAGCCACAGGAAAGCAAAGC 60.039 55.000 0.00 0.00 0.00 3.51
1181 1202 1.613836 AGAGCCACAGGAAAGCAAAG 58.386 50.000 0.00 0.00 0.00 2.77
1233 1258 0.881118 AATACCAAACCTGTGCAGCG 59.119 50.000 0.00 0.00 0.00 5.18
1510 1538 0.108041 CCAAATGGCAATCCACCAGC 60.108 55.000 0.00 0.00 46.92 4.85
1519 1547 1.115467 AAACACCGTCCAAATGGCAA 58.885 45.000 0.00 0.00 34.61 4.52
1655 1683 6.552350 CCTGATCTACAATTCCATCCCAAATT 59.448 38.462 0.00 0.00 0.00 1.82
1688 1716 6.439487 TGGGATCCTAGAAAAATTATGGCAA 58.561 36.000 12.58 0.00 0.00 4.52
1984 2014 8.988546 AGTGACTAAATAGAGCTTAGAGATCA 57.011 34.615 0.00 0.00 31.99 2.92
2134 2164 1.104577 TTTTTCCTGGTGTGCCGGAC 61.105 55.000 5.05 0.46 43.97 4.79
2136 2166 1.659794 CTTTTTCCTGGTGTGCCGG 59.340 57.895 0.00 0.00 40.89 6.13
2176 2206 6.782000 ACTCATGTAGCTCTATTTCTCCTCAT 59.218 38.462 0.00 0.00 0.00 2.90
2477 2666 2.224646 TGGTTGTGTTGGCTAGTGCATA 60.225 45.455 0.00 0.00 41.91 3.14
2668 2865 2.354103 CGAGGTTCACTCCACATCACAT 60.354 50.000 0.00 0.00 43.57 3.21
2694 2891 0.739813 CCAACAACGGACCGATCCTC 60.740 60.000 23.38 0.00 43.73 3.71
2715 2912 0.038983 TTCGTGCCGTGAAAGATCGA 60.039 50.000 0.00 0.00 0.00 3.59
2738 2935 0.245266 TCGTAAACCTGCTGCGATGA 59.755 50.000 0.00 0.00 0.00 2.92
2765 2962 1.440938 TTGTTTCCGTGGGACTTGCG 61.441 55.000 0.00 0.00 0.00 4.85
2785 2982 0.673644 CAGATCGAAGGGTTGGCGTT 60.674 55.000 0.00 0.00 0.00 4.84
2889 3086 3.194968 TGAAGGACATCGGGTTTAGAGAC 59.805 47.826 0.00 0.00 0.00 3.36
3000 3197 1.816835 CTACTTGCTACGTCAGGGTCA 59.183 52.381 0.00 0.00 0.00 4.02
3034 3231 5.362717 TGATAAGGAATCTACGGCTCAAGAA 59.637 40.000 0.00 0.00 35.45 2.52
3039 3236 3.929610 GCATGATAAGGAATCTACGGCTC 59.070 47.826 0.00 0.00 35.45 4.70
3160 3357 6.641169 TTGTGGTACTTTCATTTATGTGCA 57.359 33.333 0.00 0.00 0.00 4.57
3172 3369 5.993441 ACTAGTACGCATTTTGTGGTACTTT 59.007 36.000 14.27 4.98 41.22 2.66
3335 3532 4.173256 CACACACGACTGAATATGCTACA 58.827 43.478 0.00 0.00 0.00 2.74
3364 3561 3.069289 CACACCCATGATGATACATCCG 58.931 50.000 8.87 1.56 0.00 4.18
3367 3564 4.776435 TGACACACCCATGATGATACAT 57.224 40.909 0.00 0.00 0.00 2.29
3368 3565 4.566426 TTGACACACCCATGATGATACA 57.434 40.909 0.00 0.00 0.00 2.29
3377 3574 3.360867 TGTTTGACTTTGACACACCCAT 58.639 40.909 0.00 0.00 0.00 4.00
3393 3590 3.491447 CCTTGGACCTTGAAGCTTGTTTG 60.491 47.826 2.10 0.00 0.00 2.93
3997 4487 1.745232 TTCTGTCCTGCAAAACACGT 58.255 45.000 0.00 0.00 0.00 4.49
4306 4804 7.872993 TGAGGTTATGCAACTAGTTATATCTGC 59.127 37.037 8.04 7.91 34.88 4.26
4320 4818 6.539173 TCTTAAAGTTCCTGAGGTTATGCAA 58.461 36.000 0.00 0.00 0.00 4.08
4387 4885 9.443283 GCTTGACAATGTAATCAATATCACTTC 57.557 33.333 0.00 0.00 34.43 3.01
4449 4949 5.750067 GCATAAGCCAAACCTGATAAATGTG 59.250 40.000 0.00 0.00 33.58 3.21
4505 5005 1.689258 GGGCCACCCAGATTTTGCTAT 60.689 52.381 4.39 0.00 44.65 2.97
4600 5102 7.387673 GCCTAACTTTGACCAAATTTTGCTAAT 59.612 33.333 3.50 0.00 0.00 1.73
4951 5575 5.551305 AGGGGAAAAACTGAAAAGAATGG 57.449 39.130 0.00 0.00 0.00 3.16
4992 5617 3.801307 ATGATGCTATCTGATGGCCAA 57.199 42.857 21.12 6.06 35.70 4.52
5117 5742 3.692593 GGTTAACAACGAACCTGCCATAT 59.307 43.478 8.10 0.00 42.68 1.78
5167 5792 5.352569 CAGAGGTAAATGGTTACAGAAGCAG 59.647 44.000 0.00 0.00 45.74 4.24
5201 5826 8.650143 TTTTCTCCTTCCAAATAATACAGCTT 57.350 30.769 0.00 0.00 0.00 3.74
5254 5879 8.293867 AGACAACTCTATCTCATAAGCGAATAC 58.706 37.037 0.00 0.00 0.00 1.89
5437 6062 4.578516 AGACATGAAAAACCATGACAACGA 59.421 37.500 10.42 0.00 44.98 3.85
5440 6065 6.096705 AGTTGAGACATGAAAAACCATGACAA 59.903 34.615 10.42 9.88 44.98 3.18
5603 6228 6.237942 CGAGCTGACATATTTAAGACACTTGG 60.238 42.308 0.00 0.00 0.00 3.61
5627 6253 2.095466 TGCAAAAATAAGAAGACCCGCG 60.095 45.455 0.00 0.00 0.00 6.46
5648 6274 7.228308 GCATAGGAAGATAGATTTCAAGCTGTT 59.772 37.037 0.00 0.00 0.00 3.16
6036 6803 6.372659 GCAACAAGAGGAATTAATCAGTCAGA 59.627 38.462 0.00 0.00 0.00 3.27
6067 6834 6.575162 AAGGTCAAACATGTACCAGAATTC 57.425 37.500 16.74 0.00 35.64 2.17
6418 7186 1.377202 CATACTTGTGCGGGTGCCT 60.377 57.895 0.00 0.00 41.78 4.75
6613 7381 0.539518 TGCCAATCGCTAGTGCCTAA 59.460 50.000 0.00 0.00 38.78 2.69
6638 7406 9.836076 CATAATTGCATGTATATCAGTTTCCAG 57.164 33.333 0.00 0.00 0.00 3.86
6725 7495 7.718334 TCAACTCTGTTCCTGATAGACAATA 57.282 36.000 0.00 0.00 0.00 1.90
6745 7515 1.398390 GCCACGAGATGACCAATCAAC 59.602 52.381 0.00 0.00 38.69 3.18
6823 7605 5.764131 CAAACGGTTGGCAACTCTATTTTA 58.236 37.500 27.77 0.00 37.61 1.52
6838 7620 3.434299 CGACTATAGTTTGCCAAACGGTT 59.566 43.478 14.22 6.34 45.88 4.44
6872 7654 3.322254 AGATCCTCAATACGTGATGGTCC 59.678 47.826 0.00 0.00 33.64 4.46
6873 7655 4.592485 AGATCCTCAATACGTGATGGTC 57.408 45.455 0.00 0.00 35.07 4.02
6874 7656 5.359194 AAAGATCCTCAATACGTGATGGT 57.641 39.130 0.00 0.00 35.07 3.55
6875 7657 5.586243 ACAAAAGATCCTCAATACGTGATGG 59.414 40.000 0.00 0.00 35.07 3.51
6876 7658 6.536582 AGACAAAAGATCCTCAATACGTGATG 59.463 38.462 0.00 0.00 35.07 3.07
6878 7660 6.037786 AGACAAAAGATCCTCAATACGTGA 57.962 37.500 0.00 0.00 34.17 4.35
6879 7661 6.102663 AGAGACAAAAGATCCTCAATACGTG 58.897 40.000 0.00 0.00 0.00 4.49
6882 7664 6.565234 TCGAGAGACAAAAGATCCTCAATAC 58.435 40.000 0.00 0.00 33.31 1.89
6883 7665 6.775594 TCGAGAGACAAAAGATCCTCAATA 57.224 37.500 0.00 0.00 33.31 1.90
6884 7666 5.667539 TCGAGAGACAAAAGATCCTCAAT 57.332 39.130 0.00 0.00 33.31 2.57
6899 7687 3.513662 CGAGAGAACTACAGTCGAGAGA 58.486 50.000 0.00 0.00 38.16 3.10
6905 7693 7.314393 AGTTTTATTCCGAGAGAACTACAGTC 58.686 38.462 0.00 0.00 37.29 3.51
6906 7694 7.229581 AGTTTTATTCCGAGAGAACTACAGT 57.770 36.000 0.00 0.00 37.29 3.55
6912 7700 6.092396 GGAAAGGAGTTTTATTCCGAGAGAAC 59.908 42.308 0.00 0.00 39.77 3.01
6920 7708 3.945921 CGAGGGGAAAGGAGTTTTATTCC 59.054 47.826 0.00 0.00 40.48 3.01
6921 7709 3.377485 GCGAGGGGAAAGGAGTTTTATTC 59.623 47.826 0.00 0.00 0.00 1.75
6951 7748 3.547413 GCGTTAGCGTTGTCCTTCTTTTT 60.547 43.478 0.00 0.00 40.81 1.94
6966 7763 3.932289 ACACGTGTGAGCGTTAGC 58.068 55.556 22.71 0.00 43.83 3.09
6975 7772 2.094757 TAGCTCCCACCACACGTGTG 62.095 60.000 36.13 36.13 45.23 3.82
6976 7773 1.404479 TTAGCTCCCACCACACGTGT 61.404 55.000 17.22 17.22 41.26 4.49
6977 7774 0.250124 TTTAGCTCCCACCACACGTG 60.250 55.000 15.48 15.48 42.62 4.49
6978 7775 0.690762 ATTTAGCTCCCACCACACGT 59.309 50.000 0.00 0.00 0.00 4.49
6979 7776 1.737793 GAATTTAGCTCCCACCACACG 59.262 52.381 0.00 0.00 0.00 4.49
6980 7777 1.737793 CGAATTTAGCTCCCACCACAC 59.262 52.381 0.00 0.00 0.00 3.82
6981 7778 1.948611 GCGAATTTAGCTCCCACCACA 60.949 52.381 0.00 0.00 0.00 4.17
6982 7779 0.733150 GCGAATTTAGCTCCCACCAC 59.267 55.000 0.00 0.00 0.00 4.16
6983 7780 0.618458 AGCGAATTTAGCTCCCACCA 59.382 50.000 0.00 0.00 41.83 4.17
6984 7781 3.478540 AGCGAATTTAGCTCCCACC 57.521 52.632 0.00 0.00 41.83 4.61
6991 7788 1.648460 GCGTGCGAGCGAATTTAGC 60.648 57.895 3.30 0.00 0.00 3.09
6992 7789 1.012234 GGCGTGCGAGCGAATTTAG 60.012 57.895 3.30 0.00 38.18 1.85
6993 7790 2.457778 GGGCGTGCGAGCGAATTTA 61.458 57.895 3.30 0.00 38.18 1.40
6994 7791 2.845752 TAGGGCGTGCGAGCGAATTT 62.846 55.000 3.30 0.00 38.18 1.82
6995 7792 2.644555 ATAGGGCGTGCGAGCGAATT 62.645 55.000 3.30 0.00 38.18 2.17
6996 7793 1.802337 TATAGGGCGTGCGAGCGAAT 61.802 55.000 3.30 0.00 38.18 3.34
6997 7794 2.402282 CTATAGGGCGTGCGAGCGAA 62.402 60.000 3.30 0.00 38.18 4.70
6998 7795 2.903350 TATAGGGCGTGCGAGCGA 60.903 61.111 3.30 0.00 38.18 4.93
6999 7796 2.429236 CTATAGGGCGTGCGAGCG 60.429 66.667 0.00 0.00 38.18 5.03
7000 7797 2.735100 GCTATAGGGCGTGCGAGC 60.735 66.667 1.04 0.00 0.00 5.03
7001 7798 0.526211 TATGCTATAGGGCGTGCGAG 59.474 55.000 1.04 0.00 33.19 5.03
7002 7799 0.242825 GTATGCTATAGGGCGTGCGA 59.757 55.000 1.04 0.00 33.19 5.10
7003 7800 0.038618 TGTATGCTATAGGGCGTGCG 60.039 55.000 1.04 0.00 36.79 5.34
7004 7801 2.163818 TTGTATGCTATAGGGCGTGC 57.836 50.000 1.04 0.00 35.07 5.34
7005 7802 3.728845 AGTTTGTATGCTATAGGGCGTG 58.271 45.455 1.04 0.00 33.19 5.34
7006 7803 4.558095 CGTAGTTTGTATGCTATAGGGCGT 60.558 45.833 1.04 0.00 35.47 5.68
7007 7804 3.918591 CGTAGTTTGTATGCTATAGGGCG 59.081 47.826 1.04 0.00 34.52 6.13
7008 7805 3.678548 GCGTAGTTTGTATGCTATAGGGC 59.321 47.826 1.04 0.00 0.00 5.19
7009 7806 4.243270 GGCGTAGTTTGTATGCTATAGGG 58.757 47.826 1.04 0.00 0.00 3.53
7010 7807 4.878439 TGGCGTAGTTTGTATGCTATAGG 58.122 43.478 1.04 0.00 0.00 2.57
7011 7808 5.926542 ACATGGCGTAGTTTGTATGCTATAG 59.073 40.000 0.00 0.00 30.98 1.31
7012 7809 5.849510 ACATGGCGTAGTTTGTATGCTATA 58.150 37.500 0.00 0.00 30.98 1.31
7013 7810 4.703897 ACATGGCGTAGTTTGTATGCTAT 58.296 39.130 0.00 0.00 32.05 2.97
7014 7811 4.116961 GACATGGCGTAGTTTGTATGCTA 58.883 43.478 0.00 0.00 0.00 3.49
7015 7812 2.936498 GACATGGCGTAGTTTGTATGCT 59.064 45.455 0.00 0.00 0.00 3.79
7016 7813 2.675844 TGACATGGCGTAGTTTGTATGC 59.324 45.455 0.00 0.00 0.00 3.14
7017 7814 3.063452 GGTGACATGGCGTAGTTTGTATG 59.937 47.826 0.00 0.00 0.00 2.39
7018 7815 3.267483 GGTGACATGGCGTAGTTTGTAT 58.733 45.455 0.00 0.00 0.00 2.29
7019 7816 2.690786 GGTGACATGGCGTAGTTTGTA 58.309 47.619 0.00 0.00 0.00 2.41
7020 7817 1.519408 GGTGACATGGCGTAGTTTGT 58.481 50.000 0.00 0.00 0.00 2.83
7021 7818 0.442310 CGGTGACATGGCGTAGTTTG 59.558 55.000 0.00 0.00 0.00 2.93
7022 7819 1.296056 GCGGTGACATGGCGTAGTTT 61.296 55.000 0.00 0.00 0.00 2.66
7023 7820 1.740296 GCGGTGACATGGCGTAGTT 60.740 57.895 0.00 0.00 0.00 2.24
7024 7821 2.125673 GCGGTGACATGGCGTAGT 60.126 61.111 0.00 0.00 0.00 2.73
7025 7822 1.521457 ATGCGGTGACATGGCGTAG 60.521 57.895 0.00 0.00 0.00 3.51
7026 7823 1.813337 CATGCGGTGACATGGCGTA 60.813 57.895 0.00 0.00 43.05 4.42
7027 7824 3.126879 CATGCGGTGACATGGCGT 61.127 61.111 0.00 0.00 43.05 5.68
7041 7838 7.148540 CCAAAAAGGTTTTCAGATGCATACATG 60.149 37.037 0.00 0.00 36.35 3.21
7042 7839 6.875195 CCAAAAAGGTTTTCAGATGCATACAT 59.125 34.615 0.00 0.00 39.98 2.29
7043 7840 6.041409 TCCAAAAAGGTTTTCAGATGCATACA 59.959 34.615 0.00 0.00 39.02 2.29
7044 7841 6.454795 TCCAAAAAGGTTTTCAGATGCATAC 58.545 36.000 0.00 0.00 39.02 2.39
7045 7842 6.662865 TCCAAAAAGGTTTTCAGATGCATA 57.337 33.333 0.00 0.00 39.02 3.14
7046 7843 5.549742 TCCAAAAAGGTTTTCAGATGCAT 57.450 34.783 0.00 0.00 39.02 3.96
7047 7844 5.549742 ATCCAAAAAGGTTTTCAGATGCA 57.450 34.783 0.00 0.00 39.02 3.96
7048 7845 6.866010 AAATCCAAAAAGGTTTTCAGATGC 57.134 33.333 2.39 0.00 34.89 3.91
7049 7846 8.553696 CAGAAAATCCAAAAAGGTTTTCAGATG 58.446 33.333 11.40 0.00 42.92 2.90
7050 7847 8.267183 ACAGAAAATCCAAAAAGGTTTTCAGAT 58.733 29.630 11.40 0.00 42.92 2.90
7051 7848 7.619965 ACAGAAAATCCAAAAAGGTTTTCAGA 58.380 30.769 11.40 0.00 42.92 3.27
7052 7849 7.848223 ACAGAAAATCCAAAAAGGTTTTCAG 57.152 32.000 11.40 6.77 42.92 3.02
7053 7850 8.628630 AAACAGAAAATCCAAAAAGGTTTTCA 57.371 26.923 11.40 0.00 42.92 2.69
7054 7851 9.906660 AAAAACAGAAAATCCAAAAAGGTTTTC 57.093 25.926 0.00 2.51 41.98 2.29
7096 7893 9.801873 GGATCTTCAATCGGATTTTTCATTTAA 57.198 29.630 0.00 0.00 0.00 1.52
7097 7894 8.128582 CGGATCTTCAATCGGATTTTTCATTTA 58.871 33.333 0.00 0.00 0.00 1.40
7098 7895 6.974622 CGGATCTTCAATCGGATTTTTCATTT 59.025 34.615 0.00 0.00 0.00 2.32
7099 7896 6.095440 ACGGATCTTCAATCGGATTTTTCATT 59.905 34.615 0.00 0.00 0.00 2.57
7100 7897 5.590259 ACGGATCTTCAATCGGATTTTTCAT 59.410 36.000 0.00 0.00 0.00 2.57
7101 7898 4.941263 ACGGATCTTCAATCGGATTTTTCA 59.059 37.500 0.00 0.00 0.00 2.69
7102 7899 5.485662 ACGGATCTTCAATCGGATTTTTC 57.514 39.130 0.00 0.00 0.00 2.29
7103 7900 5.897377 AACGGATCTTCAATCGGATTTTT 57.103 34.783 0.00 0.00 0.00 1.94
7104 7901 5.897377 AAACGGATCTTCAATCGGATTTT 57.103 34.783 0.00 0.00 0.00 1.82
7105 7902 5.414454 TGAAAACGGATCTTCAATCGGATTT 59.586 36.000 0.00 1.34 0.00 2.17
7106 7903 4.941263 TGAAAACGGATCTTCAATCGGATT 59.059 37.500 0.00 0.00 0.00 3.01
7107 7904 4.513442 TGAAAACGGATCTTCAATCGGAT 58.487 39.130 0.00 0.00 0.00 4.18
7108 7905 3.932822 TGAAAACGGATCTTCAATCGGA 58.067 40.909 0.00 0.00 0.00 4.55
7109 7906 4.332543 TGATGAAAACGGATCTTCAATCGG 59.667 41.667 0.00 0.00 35.31 4.18
7110 7907 5.469373 TGATGAAAACGGATCTTCAATCG 57.531 39.130 0.00 0.00 35.31 3.34
7111 7908 9.787532 TTTAATGATGAAAACGGATCTTCAATC 57.212 29.630 0.00 0.81 35.44 2.67
7113 7910 9.787532 GATTTAATGATGAAAACGGATCTTCAA 57.212 29.630 0.00 0.00 35.44 2.69
7114 7911 8.405531 GGATTTAATGATGAAAACGGATCTTCA 58.594 33.333 0.00 0.00 36.01 3.02
7115 7912 7.862873 GGGATTTAATGATGAAAACGGATCTTC 59.137 37.037 0.00 0.00 0.00 2.87
7116 7913 7.561356 AGGGATTTAATGATGAAAACGGATCTT 59.439 33.333 0.00 0.00 0.00 2.40
7117 7914 7.062957 AGGGATTTAATGATGAAAACGGATCT 58.937 34.615 0.00 0.00 0.00 2.75
7118 7915 7.277174 AGGGATTTAATGATGAAAACGGATC 57.723 36.000 0.00 0.00 0.00 3.36
7119 7916 6.017109 CGAGGGATTTAATGATGAAAACGGAT 60.017 38.462 0.00 0.00 0.00 4.18
7120 7917 5.295787 CGAGGGATTTAATGATGAAAACGGA 59.704 40.000 0.00 0.00 0.00 4.69
7121 7918 5.510671 CGAGGGATTTAATGATGAAAACGG 58.489 41.667 0.00 0.00 0.00 4.44
7122 7919 4.970003 GCGAGGGATTTAATGATGAAAACG 59.030 41.667 0.00 0.00 0.00 3.60
7123 7920 4.970003 CGCGAGGGATTTAATGATGAAAAC 59.030 41.667 0.00 0.00 0.00 2.43
7124 7921 4.878971 TCGCGAGGGATTTAATGATGAAAA 59.121 37.500 3.71 0.00 0.00 2.29
7125 7922 4.272504 GTCGCGAGGGATTTAATGATGAAA 59.727 41.667 10.24 0.00 0.00 2.69
7126 7923 3.807622 GTCGCGAGGGATTTAATGATGAA 59.192 43.478 10.24 0.00 0.00 2.57
7127 7924 3.390135 GTCGCGAGGGATTTAATGATGA 58.610 45.455 10.24 0.00 0.00 2.92
7128 7925 2.155732 CGTCGCGAGGGATTTAATGATG 59.844 50.000 20.58 0.00 0.00 3.07
7129 7926 2.035449 TCGTCGCGAGGGATTTAATGAT 59.965 45.455 26.64 0.00 0.00 2.45
7130 7927 1.406180 TCGTCGCGAGGGATTTAATGA 59.594 47.619 26.64 2.73 0.00 2.57
7131 7928 1.847818 TCGTCGCGAGGGATTTAATG 58.152 50.000 26.64 0.13 0.00 1.90
7142 7939 1.983605 GTTTCAAAGATCTCGTCGCGA 59.016 47.619 3.71 3.71 0.00 5.87
7143 7940 1.986378 AGTTTCAAAGATCTCGTCGCG 59.014 47.619 0.00 0.00 0.00 5.87
7144 7941 4.413087 TCTAGTTTCAAAGATCTCGTCGC 58.587 43.478 0.00 0.00 0.00 5.19
7145 7942 6.726035 GATCTAGTTTCAAAGATCTCGTCG 57.274 41.667 0.00 0.00 43.14 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.