Multiple sequence alignment - TraesCS4D01G207800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G207800 chr4D 100.000 3681 0 0 1 3681 357528442 357524762 0.000000e+00 6798.0
1 TraesCS4D01G207800 chr4D 90.306 196 16 2 3486 3679 357513639 357513445 1.700000e-63 254.0
2 TraesCS4D01G207800 chr4B 94.166 2777 114 13 752 3487 440923547 440920778 0.000000e+00 4187.0
3 TraesCS4D01G207800 chr4B 82.781 453 62 9 3231 3681 601746931 601747369 1.240000e-104 390.0
4 TraesCS4D01G207800 chr4B 90.833 240 21 1 3442 3681 440920734 440920496 1.650000e-83 320.0
5 TraesCS4D01G207800 chr4B 88.325 197 21 2 3486 3681 601748171 601748366 6.150000e-58 235.0
6 TraesCS4D01G207800 chr4B 92.593 81 6 0 327 407 440924623 440924543 2.320000e-22 117.0
7 TraesCS4D01G207800 chr4A 96.475 2099 53 4 790 2867 108373664 108375762 0.000000e+00 3446.0
8 TraesCS4D01G207800 chr4A 92.927 509 28 5 281 788 108373078 108373579 0.000000e+00 734.0
9 TraesCS4D01G207800 chr4A 86.837 547 47 2 2922 3443 108375761 108376307 4.090000e-164 588.0
10 TraesCS4D01G207800 chr4A 90.400 250 24 0 3432 3681 108376338 108376587 2.740000e-86 329.0
11 TraesCS4D01G207800 chr4A 92.958 71 5 0 67 137 108373023 108373093 1.810000e-18 104.0
12 TraesCS4D01G207800 chr7D 89.796 196 20 0 3486 3681 531203573 531203378 6.100000e-63 252.0
13 TraesCS4D01G207800 chr1D 89.175 194 20 1 3486 3679 381963773 381963581 1.320000e-59 241.0
14 TraesCS4D01G207800 chr1D 79.904 209 42 0 3227 3435 491398004 491397796 1.770000e-33 154.0
15 TraesCS4D01G207800 chr1D 82.609 138 24 0 3150 3287 1796219 1796356 4.990000e-24 122.0
16 TraesCS4D01G207800 chr7A 87.245 196 25 0 3486 3681 611564851 611564656 1.330000e-54 224.0
17 TraesCS4D01G207800 chr7A 87.059 85 7 3 135 217 707687276 707687358 3.910000e-15 93.5
18 TraesCS4D01G207800 chr7A 86.364 88 8 3 135 220 710617428 710617343 3.910000e-15 93.5
19 TraesCS4D01G207800 chr1B 86.207 203 26 2 3231 3432 402592674 402592473 6.190000e-53 219.0
20 TraesCS4D01G207800 chr6B 84.000 225 36 0 3225 3449 21141141 21141365 2.230000e-52 217.0
21 TraesCS4D01G207800 chrUn 86.224 196 26 1 3486 3681 352756876 352757070 1.040000e-50 211.0
22 TraesCS4D01G207800 chrUn 86.154 65 5 4 131 191 33041100 33041164 2.370000e-07 67.6
23 TraesCS4D01G207800 chr5B 75.212 472 99 13 3223 3681 382319058 382319524 1.340000e-49 207.0
24 TraesCS4D01G207800 chr5B 79.024 205 41 2 1287 1490 8352161 8352364 4.960000e-29 139.0
25 TraesCS4D01G207800 chr2A 83.582 201 31 2 3233 3432 40935313 40935114 1.750000e-43 187.0
26 TraesCS4D01G207800 chr1A 74.510 510 86 20 2949 3427 314624773 314625269 8.120000e-42 182.0
27 TraesCS4D01G207800 chr1A 87.097 62 7 1 131 191 580744546 580744485 6.600000e-08 69.4
28 TraesCS4D01G207800 chr5A 80.000 180 34 2 1287 1465 6422451 6422629 8.290000e-27 132.0
29 TraesCS4D01G207800 chr3D 83.333 108 13 5 3342 3446 572479752 572479857 1.090000e-15 95.3
30 TraesCS4D01G207800 chr3D 94.595 37 0 2 514 548 572227096 572227132 5.140000e-04 56.5
31 TraesCS4D01G207800 chr7B 85.263 95 9 4 135 227 707762800 707762891 3.910000e-15 93.5
32 TraesCS4D01G207800 chr7B 94.595 37 1 1 156 191 706905599 706905563 5.140000e-04 56.5
33 TraesCS4D01G207800 chr3B 79.381 97 14 5 514 608 761707445 761707353 3.070000e-06 63.9
34 TraesCS4D01G207800 chr3A 86.667 60 5 3 135 191 340812838 340812779 3.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G207800 chr4D 357524762 357528442 3680 True 6798.000000 6798 100.000000 1 3681 1 chr4D.!!$R2 3680
1 TraesCS4D01G207800 chr4B 440920496 440924623 4127 True 1541.333333 4187 92.530667 327 3681 3 chr4B.!!$R1 3354
2 TraesCS4D01G207800 chr4B 601746931 601748366 1435 False 312.500000 390 85.553000 3231 3681 2 chr4B.!!$F1 450
3 TraesCS4D01G207800 chr4A 108373023 108376587 3564 False 1040.200000 3446 91.919400 67 3681 5 chr4A.!!$F1 3614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.332972 AAAGAAGGATGACCCCTGCC 59.667 55.000 0.0 0.0 36.49 4.85 F
164 165 0.551131 AAGAAGGATGACCCCTGCCT 60.551 55.000 0.0 0.0 36.49 4.75 F
165 166 0.985490 AGAAGGATGACCCCTGCCTC 60.985 60.000 0.0 0.0 36.49 4.70 F
167 168 1.277580 AAGGATGACCCCTGCCTCTG 61.278 60.000 0.0 0.0 36.49 3.35 F
811 1611 2.116238 TGTCCATAGGTCTTGGGCTAC 58.884 52.381 0.0 0.0 39.66 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1194 2015 1.575419 TTAGGTGTAGGTGCCCGATT 58.425 50.000 0.00 0.00 0.00 3.34 R
1581 2402 1.815196 CAGGAGCTCGCTCATGTCT 59.185 57.895 21.50 7.35 46.08 3.41 R
1920 2741 3.030291 ACCATACTCCTGCTGAAGAGAG 58.970 50.000 4.32 1.02 34.13 3.20 R
2186 3007 1.002134 CCATCTCTTGCCCGTTGGT 60.002 57.895 0.00 0.00 0.00 3.67 R
2797 3618 2.191815 TGTGCGCATTACATTGATGC 57.808 45.000 15.91 0.00 44.90 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.540314 AGCATGCATATAGCTAGGCTC 57.460 47.619 21.98 5.71 45.94 4.70
21 22 3.106054 AGCATGCATATAGCTAGGCTCT 58.894 45.455 21.98 7.34 45.94 4.09
22 23 3.518705 AGCATGCATATAGCTAGGCTCTT 59.481 43.478 21.98 0.00 45.94 2.85
23 24 4.713814 AGCATGCATATAGCTAGGCTCTTA 59.286 41.667 21.98 0.00 45.94 2.10
24 25 4.808364 GCATGCATATAGCTAGGCTCTTAC 59.192 45.833 14.21 0.02 45.94 2.34
25 26 5.395103 GCATGCATATAGCTAGGCTCTTACT 60.395 44.000 14.21 0.00 45.94 2.24
26 27 6.638610 CATGCATATAGCTAGGCTCTTACTT 58.361 40.000 0.00 0.00 45.94 2.24
27 28 6.030548 TGCATATAGCTAGGCTCTTACTTG 57.969 41.667 13.79 0.00 45.94 3.16
28 29 5.775195 TGCATATAGCTAGGCTCTTACTTGA 59.225 40.000 13.79 0.00 45.94 3.02
29 30 6.071672 TGCATATAGCTAGGCTCTTACTTGAG 60.072 42.308 13.79 0.00 45.94 3.02
30 31 6.151985 GCATATAGCTAGGCTCTTACTTGAGA 59.848 42.308 0.00 0.00 40.44 3.27
31 32 7.628366 GCATATAGCTAGGCTCTTACTTGAGAG 60.628 44.444 0.00 0.00 42.14 3.20
39 40 4.911514 CTCTTACTTGAGAGCCTACTCC 57.088 50.000 0.00 0.00 44.65 3.85
40 41 3.633418 TCTTACTTGAGAGCCTACTCCC 58.367 50.000 0.00 0.00 44.65 4.30
41 42 3.011369 TCTTACTTGAGAGCCTACTCCCA 59.989 47.826 0.00 0.00 44.65 4.37
42 43 2.559381 ACTTGAGAGCCTACTCCCAT 57.441 50.000 0.00 0.00 44.65 4.00
43 44 2.393646 ACTTGAGAGCCTACTCCCATC 58.606 52.381 0.00 0.00 44.65 3.51
44 45 2.023501 ACTTGAGAGCCTACTCCCATCT 60.024 50.000 0.00 0.00 44.65 2.90
45 46 2.856760 TGAGAGCCTACTCCCATCTT 57.143 50.000 0.00 0.00 44.65 2.40
46 47 3.121929 TGAGAGCCTACTCCCATCTTT 57.878 47.619 0.00 0.00 44.65 2.52
47 48 3.454858 TGAGAGCCTACTCCCATCTTTT 58.545 45.455 0.00 0.00 44.65 2.27
48 49 3.846588 TGAGAGCCTACTCCCATCTTTTT 59.153 43.478 0.00 0.00 44.65 1.94
94 95 9.503399 AGGCTATAAACCTAATATTGTACTTGC 57.497 33.333 0.00 0.00 35.10 4.01
120 121 8.388656 TCTAAACTACCTATTTCCAAGGTGAT 57.611 34.615 5.04 0.00 46.90 3.06
159 160 5.545063 TTTTTGAAAAGAAGGATGACCCC 57.455 39.130 0.00 0.00 36.73 4.95
160 161 4.469469 TTTGAAAAGAAGGATGACCCCT 57.531 40.909 0.00 0.00 38.42 4.79
161 162 3.439857 TGAAAAGAAGGATGACCCCTG 57.560 47.619 0.00 0.00 36.49 4.45
162 163 2.095461 GAAAAGAAGGATGACCCCTGC 58.905 52.381 0.00 0.00 36.49 4.85
163 164 0.332972 AAAGAAGGATGACCCCTGCC 59.667 55.000 0.00 0.00 36.49 4.85
164 165 0.551131 AAGAAGGATGACCCCTGCCT 60.551 55.000 0.00 0.00 36.49 4.75
165 166 0.985490 AGAAGGATGACCCCTGCCTC 60.985 60.000 0.00 0.00 36.49 4.70
166 167 0.985490 GAAGGATGACCCCTGCCTCT 60.985 60.000 0.00 0.00 36.49 3.69
167 168 1.277580 AAGGATGACCCCTGCCTCTG 61.278 60.000 0.00 0.00 36.49 3.35
168 169 2.191641 GATGACCCCTGCCTCTGC 59.808 66.667 0.00 0.00 38.26 4.26
188 189 3.466712 CATCAATCGATGTATGCAGCC 57.533 47.619 0.00 0.00 43.52 4.85
189 190 2.618442 TCAATCGATGTATGCAGCCA 57.382 45.000 0.00 0.00 0.00 4.75
190 191 3.130280 TCAATCGATGTATGCAGCCAT 57.870 42.857 0.00 0.79 35.44 4.40
191 192 4.270245 TCAATCGATGTATGCAGCCATA 57.730 40.909 0.00 0.00 32.85 2.74
192 193 4.835678 TCAATCGATGTATGCAGCCATAT 58.164 39.130 0.00 0.00 36.40 1.78
193 194 4.872124 TCAATCGATGTATGCAGCCATATC 59.128 41.667 0.00 0.00 36.40 1.63
194 195 3.959535 TCGATGTATGCAGCCATATCA 57.040 42.857 0.00 0.00 36.40 2.15
195 196 4.476628 TCGATGTATGCAGCCATATCAT 57.523 40.909 0.00 0.00 36.40 2.45
196 197 4.835678 TCGATGTATGCAGCCATATCATT 58.164 39.130 0.00 0.00 36.40 2.57
197 198 5.976458 TCGATGTATGCAGCCATATCATTA 58.024 37.500 0.00 0.00 36.40 1.90
198 199 6.044682 TCGATGTATGCAGCCATATCATTAG 58.955 40.000 0.00 0.00 36.40 1.73
199 200 6.044682 CGATGTATGCAGCCATATCATTAGA 58.955 40.000 0.00 0.00 36.40 2.10
200 201 6.536224 CGATGTATGCAGCCATATCATTAGAA 59.464 38.462 0.00 0.00 36.40 2.10
201 202 7.064966 CGATGTATGCAGCCATATCATTAGAAA 59.935 37.037 0.00 0.00 36.40 2.52
202 203 8.640063 ATGTATGCAGCCATATCATTAGAAAA 57.360 30.769 0.00 0.00 36.40 2.29
203 204 8.102800 TGTATGCAGCCATATCATTAGAAAAG 57.897 34.615 0.00 0.00 36.40 2.27
204 205 7.938490 TGTATGCAGCCATATCATTAGAAAAGA 59.062 33.333 0.00 0.00 36.40 2.52
205 206 7.828508 ATGCAGCCATATCATTAGAAAAGAA 57.171 32.000 0.00 0.00 0.00 2.52
206 207 7.031226 TGCAGCCATATCATTAGAAAAGAAC 57.969 36.000 0.00 0.00 0.00 3.01
207 208 6.138761 GCAGCCATATCATTAGAAAAGAACG 58.861 40.000 0.00 0.00 0.00 3.95
208 209 6.238484 GCAGCCATATCATTAGAAAAGAACGT 60.238 38.462 0.00 0.00 0.00 3.99
209 210 7.042051 GCAGCCATATCATTAGAAAAGAACGTA 60.042 37.037 0.00 0.00 0.00 3.57
210 211 8.826710 CAGCCATATCATTAGAAAAGAACGTAA 58.173 33.333 0.00 0.00 0.00 3.18
211 212 8.827677 AGCCATATCATTAGAAAAGAACGTAAC 58.172 33.333 0.00 0.00 0.00 2.50
212 213 8.609176 GCCATATCATTAGAAAAGAACGTAACA 58.391 33.333 0.00 0.00 0.00 2.41
218 219 9.321562 TCATTAGAAAAGAACGTAACAAAGTCT 57.678 29.630 0.00 0.00 0.00 3.24
219 220 9.931210 CATTAGAAAAGAACGTAACAAAGTCTT 57.069 29.630 0.00 0.00 0.00 3.01
223 224 8.610035 AGAAAAGAACGTAACAAAGTCTTAAGG 58.390 33.333 1.85 0.00 0.00 2.69
224 225 7.854557 AAAGAACGTAACAAAGTCTTAAGGT 57.145 32.000 1.85 0.00 0.00 3.50
225 226 7.474398 AAGAACGTAACAAAGTCTTAAGGTC 57.526 36.000 1.85 0.00 0.00 3.85
226 227 5.987953 AGAACGTAACAAAGTCTTAAGGTCC 59.012 40.000 1.85 0.00 0.00 4.46
227 228 4.301628 ACGTAACAAAGTCTTAAGGTCCG 58.698 43.478 1.85 1.87 0.00 4.79
228 229 4.037923 ACGTAACAAAGTCTTAAGGTCCGA 59.962 41.667 1.85 0.00 0.00 4.55
229 230 4.984161 CGTAACAAAGTCTTAAGGTCCGAA 59.016 41.667 1.85 0.00 0.00 4.30
230 231 5.118203 CGTAACAAAGTCTTAAGGTCCGAAG 59.882 44.000 1.85 1.15 0.00 3.79
231 232 4.950205 ACAAAGTCTTAAGGTCCGAAGA 57.050 40.909 1.85 5.43 0.00 2.87
232 233 5.286267 ACAAAGTCTTAAGGTCCGAAGAA 57.714 39.130 10.00 0.00 33.59 2.52
233 234 5.298347 ACAAAGTCTTAAGGTCCGAAGAAG 58.702 41.667 10.00 1.07 33.59 2.85
234 235 3.596310 AGTCTTAAGGTCCGAAGAAGC 57.404 47.619 10.00 1.55 33.59 3.86
235 236 3.166679 AGTCTTAAGGTCCGAAGAAGCT 58.833 45.455 10.00 3.43 33.59 3.74
236 237 3.193903 AGTCTTAAGGTCCGAAGAAGCTC 59.806 47.826 10.00 0.70 33.59 4.09
237 238 3.056749 GTCTTAAGGTCCGAAGAAGCTCA 60.057 47.826 10.00 0.00 33.59 4.26
238 239 3.769844 TCTTAAGGTCCGAAGAAGCTCAT 59.230 43.478 1.85 0.00 0.00 2.90
239 240 4.954202 TCTTAAGGTCCGAAGAAGCTCATA 59.046 41.667 1.85 0.00 0.00 2.15
240 241 5.421056 TCTTAAGGTCCGAAGAAGCTCATAA 59.579 40.000 1.85 0.00 0.00 1.90
241 242 4.553330 AAGGTCCGAAGAAGCTCATAAA 57.447 40.909 0.00 0.00 0.00 1.40
242 243 3.863041 AGGTCCGAAGAAGCTCATAAAC 58.137 45.455 0.00 0.00 0.00 2.01
243 244 3.515901 AGGTCCGAAGAAGCTCATAAACT 59.484 43.478 0.00 0.00 0.00 2.66
244 245 3.619038 GGTCCGAAGAAGCTCATAAACTG 59.381 47.826 0.00 0.00 0.00 3.16
245 246 4.495422 GTCCGAAGAAGCTCATAAACTGA 58.505 43.478 0.00 0.00 0.00 3.41
246 247 4.929808 GTCCGAAGAAGCTCATAAACTGAA 59.070 41.667 0.00 0.00 32.14 3.02
247 248 5.582665 GTCCGAAGAAGCTCATAAACTGAAT 59.417 40.000 0.00 0.00 32.14 2.57
248 249 6.757010 GTCCGAAGAAGCTCATAAACTGAATA 59.243 38.462 0.00 0.00 32.14 1.75
249 250 6.980978 TCCGAAGAAGCTCATAAACTGAATAG 59.019 38.462 0.00 0.00 32.14 1.73
250 251 6.758886 CCGAAGAAGCTCATAAACTGAATAGT 59.241 38.462 0.00 0.00 39.32 2.12
251 252 7.921214 CCGAAGAAGCTCATAAACTGAATAGTA 59.079 37.037 0.00 0.00 35.69 1.82
252 253 8.963130 CGAAGAAGCTCATAAACTGAATAGTAG 58.037 37.037 0.00 0.00 35.69 2.57
253 254 9.810545 GAAGAAGCTCATAAACTGAATAGTAGT 57.189 33.333 0.00 0.00 35.69 2.73
254 255 9.810545 AAGAAGCTCATAAACTGAATAGTAGTC 57.189 33.333 0.00 0.00 35.69 2.59
255 256 8.972127 AGAAGCTCATAAACTGAATAGTAGTCA 58.028 33.333 0.00 0.00 35.69 3.41
256 257 9.587772 GAAGCTCATAAACTGAATAGTAGTCAA 57.412 33.333 1.47 0.00 35.69 3.18
257 258 9.944376 AAGCTCATAAACTGAATAGTAGTCAAA 57.056 29.630 1.47 0.00 35.69 2.69
258 259 9.944376 AGCTCATAAACTGAATAGTAGTCAAAA 57.056 29.630 1.47 0.00 35.69 2.44
279 280 9.849166 TCAAAAGAAAATAAGTCTGAAAAACGT 57.151 25.926 0.00 0.00 0.00 3.99
280 281 9.885743 CAAAAGAAAATAAGTCTGAAAAACGTG 57.114 29.630 0.00 0.00 0.00 4.49
281 282 9.849166 AAAAGAAAATAAGTCTGAAAAACGTGA 57.151 25.926 0.00 0.00 0.00 4.35
307 308 3.896648 TCTTGATTTGAACCGCTTGTC 57.103 42.857 0.00 0.00 0.00 3.18
321 322 3.194542 CCGCTTGTCCCAATTTATTCCAA 59.805 43.478 0.00 0.00 0.00 3.53
402 404 7.022055 TGTAGTTCATTCTTTGCGAGAAAAA 57.978 32.000 6.45 2.75 46.90 1.94
466 468 5.262588 AGGGTGCTTTTTAAGTGTTTCAG 57.737 39.130 0.00 0.00 0.00 3.02
476 478 3.644966 AAGTGTTTCAGAGACCCAACA 57.355 42.857 0.00 0.00 0.00 3.33
477 479 3.864789 AGTGTTTCAGAGACCCAACAT 57.135 42.857 0.00 0.00 32.00 2.71
480 482 2.158623 TGTTTCAGAGACCCAACATGCT 60.159 45.455 0.00 0.00 0.00 3.79
481 483 2.887152 GTTTCAGAGACCCAACATGCTT 59.113 45.455 0.00 0.00 0.00 3.91
776 1493 2.236146 ACTTGGTGTGTCAGACTGTCAA 59.764 45.455 10.88 1.39 0.00 3.18
788 1505 6.372381 TGTCAGACTGTCAATAATCCATGTTG 59.628 38.462 10.88 0.00 0.00 3.33
800 1600 2.934887 TCCATGTTGCATGTCCATAGG 58.065 47.619 8.11 0.40 0.00 2.57
811 1611 2.116238 TGTCCATAGGTCTTGGGCTAC 58.884 52.381 0.00 0.00 39.66 3.58
908 1718 5.221722 CCTTGGTACTCCATATGCTACATGT 60.222 44.000 2.69 2.69 43.91 3.21
1110 1931 3.357079 GTGGTTGTGCCGCTCCTG 61.357 66.667 0.00 0.00 44.20 3.86
1194 2015 2.520982 CCGACGAGGCTCCCCATA 60.521 66.667 9.32 0.00 0.00 2.74
1920 2741 2.879646 AGACTTCATCGACGTATCCCTC 59.120 50.000 0.00 0.00 0.00 4.30
2186 3007 5.425539 CAGGAAGAGGTAAGGAGGAATGTAA 59.574 44.000 0.00 0.00 0.00 2.41
2632 3453 6.725364 AGATATGACTGAGGTGTTTGGAATT 58.275 36.000 0.00 0.00 0.00 2.17
2803 3624 3.726557 AATCCTCAACCTCTGCATCAA 57.273 42.857 0.00 0.00 0.00 2.57
2822 3643 4.000325 TCAATGTAATGCGCACAACTAGT 59.000 39.130 14.90 1.54 0.00 2.57
2857 3678 6.305877 GTGAATTGTTTTTACGTGTGTTGTCA 59.694 34.615 0.00 0.00 0.00 3.58
2874 3695 8.934973 GTGTTGTCACATTTGTTATCTAAGTC 57.065 34.615 0.00 0.00 43.37 3.01
2882 3703 8.453320 CACATTTGTTATCTAAGTCATCAGCAA 58.547 33.333 0.00 0.00 0.00 3.91
2890 3711 6.915544 TCTAAGTCATCAGCAATGATTGAC 57.084 37.500 9.76 0.41 45.94 3.18
2943 3765 9.825972 ACAATACTTGAAAATAAATGAGTGTCG 57.174 29.630 0.00 0.00 0.00 4.35
2982 3804 0.246086 TTTCGTATACGCCGGGTGTT 59.754 50.000 19.71 9.31 39.60 3.32
3032 3854 2.554142 CACTCAGCAAACTCACAGACA 58.446 47.619 0.00 0.00 0.00 3.41
3048 3870 4.460731 CACAGACATCAAGAGTACCTCTCA 59.539 45.833 0.00 0.00 44.98 3.27
3050 3872 4.097741 CAGACATCAAGAGTACCTCTCAGG 59.902 50.000 0.00 0.00 44.98 3.86
3148 3970 2.046507 CCGAGAGCCAAGCAGCTT 60.047 61.111 0.21 0.21 45.15 3.74
3293 4140 7.904558 TCAAATAGTCAGATAGTCCAGATGT 57.095 36.000 0.00 0.00 0.00 3.06
3303 4150 7.561722 TCAGATAGTCCAGATGTAGTAAGCTTT 59.438 37.037 3.20 0.00 0.00 3.51
3319 4166 7.676947 AGTAAGCTTTGGTCTTCATTACACTA 58.323 34.615 3.20 0.00 0.00 2.74
3326 4173 8.597662 TTTGGTCTTCATTACACTACTGTTAC 57.402 34.615 0.00 0.00 0.00 2.50
3379 4226 2.102252 GTCCCGAGCAGAGAAGATTCAT 59.898 50.000 0.00 0.00 0.00 2.57
3468 4403 3.185455 AGCCACCTTCCTAATCTTCACT 58.815 45.455 0.00 0.00 0.00 3.41
3478 4413 3.619038 CCTAATCTTCACTTGTTCCGCTC 59.381 47.826 0.00 0.00 0.00 5.03
3501 4436 4.885907 CGTAAACCTAGTCTCTGGGTATCA 59.114 45.833 5.30 0.00 44.56 2.15
3589 4524 0.700564 TGCTCTCAAAGGAGGCCATT 59.299 50.000 5.01 0.00 41.69 3.16
3602 4537 1.580942 GCCATTGCATGACACGTGT 59.419 52.632 23.64 23.64 37.47 4.49
3673 5602 1.144057 CGGCTAGGGTTTCATCGCT 59.856 57.895 0.00 0.00 34.99 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.106054 AGAGCCTAGCTATATGCATGCT 58.894 45.455 20.33 12.35 45.94 3.79
1 2 3.540314 AGAGCCTAGCTATATGCATGC 57.460 47.619 11.82 11.82 45.94 4.06
2 3 6.219417 AGTAAGAGCCTAGCTATATGCATG 57.781 41.667 10.16 0.00 45.94 4.06
3 4 6.438741 TCAAGTAAGAGCCTAGCTATATGCAT 59.561 38.462 3.79 3.79 45.94 3.96
4 5 5.775195 TCAAGTAAGAGCCTAGCTATATGCA 59.225 40.000 11.27 0.00 45.94 3.96
5 6 6.151985 TCTCAAGTAAGAGCCTAGCTATATGC 59.848 42.308 0.00 0.00 39.88 3.14
6 7 7.695480 TCTCAAGTAAGAGCCTAGCTATATG 57.305 40.000 0.00 0.00 39.88 1.78
7 8 7.938140 CTCTCAAGTAAGAGCCTAGCTATAT 57.062 40.000 0.00 0.00 39.88 0.86
18 19 3.634910 GGGAGTAGGCTCTCAAGTAAGAG 59.365 52.174 13.48 0.00 41.81 2.85
19 20 3.633418 GGGAGTAGGCTCTCAAGTAAGA 58.367 50.000 13.48 0.00 41.81 2.10
27 28 4.495690 AAAAAGATGGGAGTAGGCTCTC 57.504 45.455 0.00 0.00 42.53 3.20
45 46 3.071023 ACGTGGAGGAGAGACATGAAAAA 59.929 43.478 0.00 0.00 0.00 1.94
46 47 2.632996 ACGTGGAGGAGAGACATGAAAA 59.367 45.455 0.00 0.00 0.00 2.29
47 48 2.248248 ACGTGGAGGAGAGACATGAAA 58.752 47.619 0.00 0.00 0.00 2.69
48 49 1.924731 ACGTGGAGGAGAGACATGAA 58.075 50.000 0.00 0.00 0.00 2.57
49 50 2.644676 CTACGTGGAGGAGAGACATGA 58.355 52.381 0.00 0.00 30.12 3.07
50 51 1.678627 CCTACGTGGAGGAGAGACATG 59.321 57.143 0.00 0.00 39.15 3.21
51 52 2.024825 GCCTACGTGGAGGAGAGACAT 61.025 57.143 8.62 0.00 39.15 3.06
52 53 0.680280 GCCTACGTGGAGGAGAGACA 60.680 60.000 8.62 0.00 39.15 3.41
53 54 0.394625 AGCCTACGTGGAGGAGAGAC 60.395 60.000 8.62 0.00 39.15 3.36
54 55 1.210538 TAGCCTACGTGGAGGAGAGA 58.789 55.000 8.62 0.00 39.15 3.10
55 56 2.279935 ATAGCCTACGTGGAGGAGAG 57.720 55.000 8.62 0.00 39.15 3.20
56 57 3.870538 TTATAGCCTACGTGGAGGAGA 57.129 47.619 8.62 0.00 39.15 3.71
57 58 3.005578 GGTTTATAGCCTACGTGGAGGAG 59.994 52.174 8.62 0.00 39.15 3.69
58 59 2.961062 GGTTTATAGCCTACGTGGAGGA 59.039 50.000 8.62 0.00 39.15 3.71
59 60 2.963782 AGGTTTATAGCCTACGTGGAGG 59.036 50.000 0.00 0.00 39.88 4.30
60 61 5.779529 TTAGGTTTATAGCCTACGTGGAG 57.220 43.478 0.00 0.00 38.23 3.86
61 62 8.308931 CAATATTAGGTTTATAGCCTACGTGGA 58.691 37.037 0.00 0.00 38.23 4.02
62 63 8.092687 ACAATATTAGGTTTATAGCCTACGTGG 58.907 37.037 0.00 0.00 38.23 4.94
94 95 7.848128 TCACCTTGGAAATAGGTAGTTTAGAG 58.152 38.462 0.00 0.00 44.12 2.43
96 97 8.265055 TCATCACCTTGGAAATAGGTAGTTTAG 58.735 37.037 0.00 0.00 44.12 1.85
137 138 5.070313 CAGGGGTCATCCTTCTTTTCAAAAA 59.930 40.000 0.00 0.00 34.31 1.94
138 139 4.588528 CAGGGGTCATCCTTCTTTTCAAAA 59.411 41.667 0.00 0.00 34.31 2.44
139 140 4.151883 CAGGGGTCATCCTTCTTTTCAAA 58.848 43.478 0.00 0.00 34.31 2.69
140 141 3.766545 CAGGGGTCATCCTTCTTTTCAA 58.233 45.455 0.00 0.00 34.31 2.69
141 142 2.555227 GCAGGGGTCATCCTTCTTTTCA 60.555 50.000 0.00 0.00 34.31 2.69
142 143 2.095461 GCAGGGGTCATCCTTCTTTTC 58.905 52.381 0.00 0.00 34.31 2.29
143 144 1.272704 GGCAGGGGTCATCCTTCTTTT 60.273 52.381 0.00 0.00 34.31 2.27
144 145 0.332972 GGCAGGGGTCATCCTTCTTT 59.667 55.000 0.00 0.00 34.31 2.52
145 146 0.551131 AGGCAGGGGTCATCCTTCTT 60.551 55.000 0.00 0.00 34.31 2.52
146 147 0.985490 GAGGCAGGGGTCATCCTTCT 60.985 60.000 0.00 0.00 34.31 2.85
147 148 0.985490 AGAGGCAGGGGTCATCCTTC 60.985 60.000 0.00 0.00 34.31 3.46
148 149 1.083706 AGAGGCAGGGGTCATCCTT 59.916 57.895 0.00 0.00 34.31 3.36
149 150 1.692042 CAGAGGCAGGGGTCATCCT 60.692 63.158 0.00 0.00 37.71 3.24
150 151 2.914289 CAGAGGCAGGGGTCATCC 59.086 66.667 0.00 0.00 0.00 3.51
151 152 2.191641 GCAGAGGCAGGGGTCATC 59.808 66.667 0.00 0.00 40.72 2.92
169 170 3.130280 TGGCTGCATACATCGATTGAT 57.870 42.857 0.50 0.00 34.28 2.57
170 171 2.618442 TGGCTGCATACATCGATTGA 57.382 45.000 0.50 0.00 0.00 2.57
171 172 4.632688 TGATATGGCTGCATACATCGATTG 59.367 41.667 0.50 0.00 0.00 2.67
172 173 4.835678 TGATATGGCTGCATACATCGATT 58.164 39.130 0.50 0.00 0.00 3.34
173 174 4.476628 TGATATGGCTGCATACATCGAT 57.523 40.909 0.50 0.00 0.00 3.59
174 175 3.959535 TGATATGGCTGCATACATCGA 57.040 42.857 0.50 0.00 0.00 3.59
175 176 6.044682 TCTAATGATATGGCTGCATACATCG 58.955 40.000 0.50 0.00 0.00 3.84
176 177 7.854557 TTCTAATGATATGGCTGCATACATC 57.145 36.000 0.50 0.00 0.00 3.06
177 178 8.640063 TTTTCTAATGATATGGCTGCATACAT 57.360 30.769 0.50 8.16 0.00 2.29
178 179 7.938490 TCTTTTCTAATGATATGGCTGCATACA 59.062 33.333 0.50 0.00 0.00 2.29
179 180 8.327941 TCTTTTCTAATGATATGGCTGCATAC 57.672 34.615 0.50 0.00 0.00 2.39
180 181 8.786898 GTTCTTTTCTAATGATATGGCTGCATA 58.213 33.333 0.50 0.00 0.00 3.14
181 182 7.521099 CGTTCTTTTCTAATGATATGGCTGCAT 60.521 37.037 0.50 0.00 0.00 3.96
182 183 6.238456 CGTTCTTTTCTAATGATATGGCTGCA 60.238 38.462 0.50 0.00 0.00 4.41
183 184 6.138761 CGTTCTTTTCTAATGATATGGCTGC 58.861 40.000 0.00 0.00 0.00 5.25
184 185 7.251704 ACGTTCTTTTCTAATGATATGGCTG 57.748 36.000 0.00 0.00 0.00 4.85
185 186 8.827677 GTTACGTTCTTTTCTAATGATATGGCT 58.172 33.333 0.00 0.00 0.00 4.75
186 187 8.609176 TGTTACGTTCTTTTCTAATGATATGGC 58.391 33.333 0.00 0.00 0.00 4.40
192 193 9.321562 AGACTTTGTTACGTTCTTTTCTAATGA 57.678 29.630 0.00 0.00 0.00 2.57
193 194 9.931210 AAGACTTTGTTACGTTCTTTTCTAATG 57.069 29.630 0.00 0.00 0.00 1.90
197 198 8.610035 CCTTAAGACTTTGTTACGTTCTTTTCT 58.390 33.333 3.36 0.00 0.00 2.52
198 199 8.393366 ACCTTAAGACTTTGTTACGTTCTTTTC 58.607 33.333 3.36 0.00 0.00 2.29
199 200 8.272545 ACCTTAAGACTTTGTTACGTTCTTTT 57.727 30.769 3.36 0.00 0.00 2.27
200 201 7.011763 GGACCTTAAGACTTTGTTACGTTCTTT 59.988 37.037 3.36 0.00 0.00 2.52
201 202 6.481313 GGACCTTAAGACTTTGTTACGTTCTT 59.519 38.462 3.36 0.00 0.00 2.52
202 203 5.987953 GGACCTTAAGACTTTGTTACGTTCT 59.012 40.000 3.36 0.00 0.00 3.01
203 204 5.107722 CGGACCTTAAGACTTTGTTACGTTC 60.108 44.000 3.36 0.00 0.00 3.95
204 205 4.746611 CGGACCTTAAGACTTTGTTACGTT 59.253 41.667 3.36 0.00 0.00 3.99
205 206 4.037923 TCGGACCTTAAGACTTTGTTACGT 59.962 41.667 3.36 0.00 0.00 3.57
206 207 4.549458 TCGGACCTTAAGACTTTGTTACG 58.451 43.478 3.36 2.90 0.00 3.18
207 208 6.218746 TCTTCGGACCTTAAGACTTTGTTAC 58.781 40.000 3.36 0.00 0.00 2.50
208 209 6.409524 TCTTCGGACCTTAAGACTTTGTTA 57.590 37.500 3.36 0.00 0.00 2.41
209 210 5.286267 TCTTCGGACCTTAAGACTTTGTT 57.714 39.130 3.36 0.00 0.00 2.83
210 211 4.950205 TCTTCGGACCTTAAGACTTTGT 57.050 40.909 3.36 0.00 0.00 2.83
211 212 4.152580 GCTTCTTCGGACCTTAAGACTTTG 59.847 45.833 3.36 0.00 31.62 2.77
212 213 4.040584 AGCTTCTTCGGACCTTAAGACTTT 59.959 41.667 3.36 0.00 31.62 2.66
213 214 3.579151 AGCTTCTTCGGACCTTAAGACTT 59.421 43.478 3.36 0.00 31.62 3.01
214 215 3.166679 AGCTTCTTCGGACCTTAAGACT 58.833 45.455 3.36 0.18 31.62 3.24
215 216 3.056749 TGAGCTTCTTCGGACCTTAAGAC 60.057 47.826 3.36 0.00 31.62 3.01
216 217 3.162666 TGAGCTTCTTCGGACCTTAAGA 58.837 45.455 3.36 2.80 0.00 2.10
217 218 3.594603 TGAGCTTCTTCGGACCTTAAG 57.405 47.619 0.00 0.00 0.00 1.85
218 219 5.670792 TTATGAGCTTCTTCGGACCTTAA 57.329 39.130 0.00 0.00 0.00 1.85
219 220 5.187186 AGTTTATGAGCTTCTTCGGACCTTA 59.813 40.000 0.00 0.00 0.00 2.69
220 221 4.020128 AGTTTATGAGCTTCTTCGGACCTT 60.020 41.667 0.00 0.00 0.00 3.50
221 222 3.515901 AGTTTATGAGCTTCTTCGGACCT 59.484 43.478 0.00 0.00 0.00 3.85
222 223 3.619038 CAGTTTATGAGCTTCTTCGGACC 59.381 47.826 0.00 0.00 0.00 4.46
223 224 4.495422 TCAGTTTATGAGCTTCTTCGGAC 58.505 43.478 0.00 0.00 32.77 4.79
224 225 4.801330 TCAGTTTATGAGCTTCTTCGGA 57.199 40.909 0.00 0.00 32.77 4.55
225 226 6.758886 ACTATTCAGTTTATGAGCTTCTTCGG 59.241 38.462 0.00 0.00 39.68 4.30
226 227 7.763172 ACTATTCAGTTTATGAGCTTCTTCG 57.237 36.000 0.00 0.00 39.68 3.79
227 228 9.810545 ACTACTATTCAGTTTATGAGCTTCTTC 57.189 33.333 0.00 0.00 39.68 2.87
228 229 9.810545 GACTACTATTCAGTTTATGAGCTTCTT 57.189 33.333 0.00 0.00 39.68 2.52
229 230 8.972127 TGACTACTATTCAGTTTATGAGCTTCT 58.028 33.333 0.00 0.00 39.68 2.85
230 231 9.587772 TTGACTACTATTCAGTTTATGAGCTTC 57.412 33.333 0.00 0.00 39.68 3.86
231 232 9.944376 TTTGACTACTATTCAGTTTATGAGCTT 57.056 29.630 0.00 0.00 39.68 3.74
232 233 9.944376 TTTTGACTACTATTCAGTTTATGAGCT 57.056 29.630 0.00 0.00 39.68 4.09
253 254 9.849166 ACGTTTTTCAGACTTATTTTCTTTTGA 57.151 25.926 0.00 0.00 0.00 2.69
254 255 9.885743 CACGTTTTTCAGACTTATTTTCTTTTG 57.114 29.630 0.00 0.00 0.00 2.44
255 256 9.849166 TCACGTTTTTCAGACTTATTTTCTTTT 57.151 25.926 0.00 0.00 0.00 2.27
266 267 9.653287 TCAAGAATATATCACGTTTTTCAGACT 57.347 29.630 0.00 0.00 0.00 3.24
275 276 8.335356 CGGTTCAAATCAAGAATATATCACGTT 58.665 33.333 0.00 0.00 0.00 3.99
276 277 7.518370 GCGGTTCAAATCAAGAATATATCACGT 60.518 37.037 0.00 0.00 0.00 4.49
277 278 6.792250 GCGGTTCAAATCAAGAATATATCACG 59.208 38.462 0.00 0.00 0.00 4.35
278 279 7.865707 AGCGGTTCAAATCAAGAATATATCAC 58.134 34.615 0.00 0.00 0.00 3.06
279 280 8.344831 CAAGCGGTTCAAATCAAGAATATATCA 58.655 33.333 0.00 0.00 0.00 2.15
280 281 8.345565 ACAAGCGGTTCAAATCAAGAATATATC 58.654 33.333 0.00 0.00 0.00 1.63
281 282 8.225603 ACAAGCGGTTCAAATCAAGAATATAT 57.774 30.769 0.00 0.00 0.00 0.86
282 283 7.201696 GGACAAGCGGTTCAAATCAAGAATATA 60.202 37.037 0.00 0.00 0.00 0.86
283 284 6.404734 GGACAAGCGGTTCAAATCAAGAATAT 60.405 38.462 0.00 0.00 0.00 1.28
284 285 5.106317 GGACAAGCGGTTCAAATCAAGAATA 60.106 40.000 0.00 0.00 0.00 1.75
285 286 4.321230 GGACAAGCGGTTCAAATCAAGAAT 60.321 41.667 0.00 0.00 0.00 2.40
286 287 3.004315 GGACAAGCGGTTCAAATCAAGAA 59.996 43.478 0.00 0.00 0.00 2.52
287 288 2.552315 GGACAAGCGGTTCAAATCAAGA 59.448 45.455 0.00 0.00 0.00 3.02
288 289 2.351738 GGGACAAGCGGTTCAAATCAAG 60.352 50.000 0.00 0.00 0.00 3.02
289 290 1.611491 GGGACAAGCGGTTCAAATCAA 59.389 47.619 0.00 0.00 0.00 2.57
290 291 1.243902 GGGACAAGCGGTTCAAATCA 58.756 50.000 0.00 0.00 0.00 2.57
291 292 1.243902 TGGGACAAGCGGTTCAAATC 58.756 50.000 0.00 0.00 31.92 2.17
307 308 7.068226 ACGAAGGTCTAATTGGAATAAATTGGG 59.932 37.037 0.00 0.00 31.09 4.12
321 322 3.442977 AGCGAGTGTTACGAAGGTCTAAT 59.557 43.478 0.00 0.00 0.00 1.73
431 433 3.217681 AGCACCCTTTACCGAGAAAAA 57.782 42.857 0.00 0.00 0.00 1.94
578 582 1.775385 TCATGCAGAGGTCGGATGTA 58.225 50.000 0.00 0.00 0.00 2.29
579 583 0.904649 TTCATGCAGAGGTCGGATGT 59.095 50.000 0.00 0.00 0.00 3.06
580 584 2.251409 ATTCATGCAGAGGTCGGATG 57.749 50.000 0.00 0.00 0.00 3.51
583 587 4.790766 GCATTTTATTCATGCAGAGGTCGG 60.791 45.833 0.00 0.00 45.50 4.79
757 1383 3.558931 ATTGACAGTCTGACACACCAA 57.441 42.857 10.88 8.61 0.00 3.67
759 1385 4.631813 GGATTATTGACAGTCTGACACACC 59.368 45.833 10.88 2.48 0.00 4.16
776 1493 5.713389 CCTATGGACATGCAACATGGATTAT 59.287 40.000 11.91 4.08 0.00 1.28
788 1505 1.972872 CCCAAGACCTATGGACATGC 58.027 55.000 0.00 0.00 40.56 4.06
811 1611 9.980457 CTCGATCGATGCGTTTATTTATATATG 57.020 33.333 19.78 0.00 0.00 1.78
834 1634 0.102120 CTGTGAGGCCTAGCTTCTCG 59.898 60.000 4.42 0.00 35.64 4.04
908 1718 4.350368 TTTATAGCCCAAGATCGATGCA 57.650 40.909 0.54 0.00 0.00 3.96
1194 2015 1.575419 TTAGGTGTAGGTGCCCGATT 58.425 50.000 0.00 0.00 0.00 3.34
1371 2192 3.352338 GAAGACCATCGACCGCGGT 62.352 63.158 34.89 34.89 38.28 5.68
1581 2402 1.815196 CAGGAGCTCGCTCATGTCT 59.185 57.895 21.50 7.35 46.08 3.41
1920 2741 3.030291 ACCATACTCCTGCTGAAGAGAG 58.970 50.000 4.32 1.02 34.13 3.20
2186 3007 1.002134 CCATCTCTTGCCCGTTGGT 60.002 57.895 0.00 0.00 0.00 3.67
2266 3087 4.157120 GGTACCGGCGGATGCAGT 62.157 66.667 35.78 11.90 45.35 4.40
2632 3453 6.601613 TGAGCTTTTCCTTTCTTGAAACTGTA 59.398 34.615 0.00 0.00 31.78 2.74
2790 3611 4.644103 GCATTACATTGATGCAGAGGTT 57.356 40.909 4.35 0.00 46.96 3.50
2797 3618 2.191815 TGTGCGCATTACATTGATGC 57.808 45.000 15.91 0.00 44.90 3.91
2803 3624 3.595173 TGACTAGTTGTGCGCATTACAT 58.405 40.909 15.91 4.76 0.00 2.29
2857 3678 8.565896 TTGCTGATGACTTAGATAACAAATGT 57.434 30.769 0.00 0.00 0.00 2.71
2874 3695 4.104696 TGCTTGTCAATCATTGCTGATG 57.895 40.909 0.00 0.00 41.34 3.07
2890 3711 6.072286 ACCTAAGTCATCAAACTGATTGCTTG 60.072 38.462 10.39 0.00 34.28 4.01
2956 3778 3.063725 CCCGGCGTATACGAAAATTCAAA 59.936 43.478 28.66 0.00 43.02 2.69
2958 3780 2.203401 CCCGGCGTATACGAAAATTCA 58.797 47.619 28.66 0.00 43.02 2.57
3048 3870 0.674895 GCCGAGATGTGCTTGTTCCT 60.675 55.000 0.00 0.00 0.00 3.36
3050 3872 0.874390 TTGCCGAGATGTGCTTGTTC 59.126 50.000 0.00 0.00 0.00 3.18
3085 3907 5.641155 ACCCTTTTGCCAAATACTACTCTT 58.359 37.500 0.00 0.00 0.00 2.85
3178 4025 1.337074 CGGCAAAGAAGTACCACCGTA 60.337 52.381 0.00 0.00 34.61 4.02
3209 4056 8.506168 ACTAATCTTTGCCAAATCTTTATCGA 57.494 30.769 0.00 0.00 0.00 3.59
3212 4059 7.619302 TGGGACTAATCTTTGCCAAATCTTTAT 59.381 33.333 0.00 0.00 0.00 1.40
3293 4140 7.676947 AGTGTAATGAAGACCAAAGCTTACTA 58.323 34.615 0.00 0.00 0.00 1.82
3303 4150 6.384224 CGTAACAGTAGTGTAATGAAGACCA 58.616 40.000 3.00 0.00 35.08 4.02
3319 4166 1.933021 TGGTCCATCTCCGTAACAGT 58.067 50.000 0.00 0.00 0.00 3.55
3326 4173 2.093500 TCAAAGTGATGGTCCATCTCCG 60.093 50.000 28.23 17.28 41.06 4.63
3379 4226 6.194967 TCATTAGGAAGATGGTCTGTCACTA 58.805 40.000 0.00 0.00 0.00 2.74
3439 4286 6.019108 AGATTAGGAAGGTGGCTCAAAAATT 58.981 36.000 0.00 0.00 0.00 1.82
3443 4332 4.042809 TGAAGATTAGGAAGGTGGCTCAAA 59.957 41.667 0.00 0.00 0.00 2.69
3452 4387 4.631813 CGGAACAAGTGAAGATTAGGAAGG 59.368 45.833 0.00 0.00 0.00 3.46
3468 4403 2.297033 ACTAGGTTTACGAGCGGAACAA 59.703 45.455 11.48 1.92 0.00 2.83
3478 4413 4.885907 TGATACCCAGAGACTAGGTTTACG 59.114 45.833 0.00 0.00 35.02 3.18
3501 4436 1.129058 AACTGGACACGTTCCCTCTT 58.871 50.000 12.35 1.65 45.17 2.85
3535 4470 2.421529 GGTCAACAGAACAACAGGACCT 60.422 50.000 0.00 0.00 40.06 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.