Multiple sequence alignment - TraesCS4D01G207700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G207700 chr4D 100.000 7861 0 0 1 7861 356890620 356882760 0.000000e+00 14517
1 TraesCS4D01G207700 chr4D 95.652 391 17 0 3019 3409 144891623 144892013 5.180000e-176 628
2 TraesCS4D01G207700 chr4D 94.737 285 13 2 1 284 334927550 334927267 7.240000e-120 442
3 TraesCS4D01G207700 chr4D 87.311 331 41 1 3084 3414 423408282 423407953 2.070000e-100 377
4 TraesCS4D01G207700 chr4D 81.839 435 47 5 2979 3412 13604423 13604020 3.510000e-88 337
5 TraesCS4D01G207700 chr4B 96.576 3329 70 17 4097 7386 440330776 440327453 0.000000e+00 5476
6 TraesCS4D01G207700 chr4B 94.205 2295 70 16 709 2982 440334535 440332283 0.000000e+00 3443
7 TraesCS4D01G207700 chr4B 97.414 696 16 1 3409 4102 440332286 440331591 0.000000e+00 1184
8 TraesCS4D01G207700 chr4B 94.428 341 12 3 7524 7861 440327323 440326987 1.170000e-142 518
9 TraesCS4D01G207700 chr4B 93.846 65 4 0 7388 7452 440327423 440327359 1.810000e-16 99
10 TraesCS4D01G207700 chr4A 96.895 3092 70 11 4791 7861 108751827 108754913 0.000000e+00 5155
11 TraesCS4D01G207700 chr4A 93.905 2346 76 27 667 2982 108748044 108750352 0.000000e+00 3478
12 TraesCS4D01G207700 chr4A 91.997 1162 50 13 3409 4542 108750349 108751495 0.000000e+00 1591
13 TraesCS4D01G207700 chr4A 96.377 138 5 0 4669 4806 108751495 108751632 2.210000e-55 228
14 TraesCS4D01G207700 chr2B 94.639 429 23 0 2981 3409 449234937 449235365 0.000000e+00 665
15 TraesCS4D01G207700 chr5D 95.844 385 13 3 283 666 412941060 412941442 3.120000e-173 619
16 TraesCS4D01G207700 chr5D 94.373 391 20 2 283 671 265682730 265683120 4.060000e-167 599
17 TraesCS4D01G207700 chr5D 92.657 286 17 4 1 284 412229258 412229541 7.340000e-110 409
18 TraesCS4D01G207700 chr2D 95.607 387 13 4 283 667 625516638 625517022 1.120000e-172 617
19 TraesCS4D01G207700 chr7D 95.103 388 16 3 282 667 534856385 534855999 6.750000e-170 608
20 TraesCS4D01G207700 chr7D 96.429 280 9 1 6 284 174998531 174998252 2.000000e-125 460
21 TraesCS4D01G207700 chr7D 93.333 285 17 2 1 284 16874228 16873945 3.390000e-113 420
22 TraesCS4D01G207700 chr6D 95.325 385 15 3 283 667 338188108 338187727 6.750000e-170 608
23 TraesCS4D01G207700 chr6D 94.859 389 18 2 283 669 365432893 365432505 2.430000e-169 606
24 TraesCS4D01G207700 chr6D 94.386 285 14 2 1 284 178840967 178841250 3.370000e-118 436
25 TraesCS4D01G207700 chr3D 95.065 385 16 3 283 665 21809602 21809985 3.140000e-168 603
26 TraesCS4D01G207700 chr3D 94.560 386 18 2 283 666 160875948 160875564 1.890000e-165 593
27 TraesCS4D01G207700 chr3D 93.333 285 17 2 1 284 466809571 466809854 3.390000e-113 420
28 TraesCS4D01G207700 chr3D 93.571 280 16 2 6 284 496050702 496050980 4.390000e-112 416
29 TraesCS4D01G207700 chr3D 92.982 285 18 2 1 284 160878287 160878004 1.580000e-111 414
30 TraesCS4D01G207700 chr1D 94.792 384 18 2 285 666 447244626 447244243 1.460000e-166 597
31 TraesCS4D01G207700 chr1D 92.982 285 17 3 1 284 442415088 442414806 5.680000e-111 412
32 TraesCS4D01G207700 chr5A 83.448 435 60 4 2981 3414 329843976 329843553 2.060000e-105 394
33 TraesCS4D01G207700 chr7A 83.140 172 29 0 3211 3382 65162442 65162613 2.940000e-34 158
34 TraesCS4D01G207700 chr3B 86.325 117 15 1 2979 3094 738164977 738164861 8.280000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G207700 chr4D 356882760 356890620 7860 True 14517.0 14517 100.0000 1 7861 1 chr4D.!!$R3 7860
1 TraesCS4D01G207700 chr4B 440326987 440334535 7548 True 2144.0 5476 95.2938 709 7861 5 chr4B.!!$R1 7152
2 TraesCS4D01G207700 chr4A 108748044 108754913 6869 False 2613.0 5155 94.7935 667 7861 4 chr4A.!!$F1 7194
3 TraesCS4D01G207700 chr3D 160875564 160878287 2723 True 503.5 593 93.7710 1 666 2 chr3D.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 261 0.389817 CTGCTAGGCGTTGCACTGTA 60.390 55.000 11.41 0.00 35.20 2.74 F
461 2522 0.611200 TTACATGTGTGGCGCCTAGT 59.389 50.000 29.70 17.83 0.00 2.57 F
622 2683 1.608590 AGTTTCGCACCCAGTTCATTG 59.391 47.619 0.00 0.00 0.00 2.82 F
2361 4453 1.384502 CCCCTCCTGATACCAGCCA 60.385 63.158 0.00 0.00 39.07 4.75 F
3002 5102 0.103208 CCCCGTTCTGATCTTCTCCG 59.897 60.000 0.00 0.00 0.00 4.63 F
3227 5327 0.035439 TTCACTTCGGGAGGGCATTC 60.035 55.000 0.00 0.00 0.00 2.67 F
3404 5504 0.037232 GTGGAGAAGACCAGAACGGG 60.037 60.000 0.00 0.00 40.85 5.28 F
3406 5506 1.079057 GAGAAGACCAGAACGGGGC 60.079 63.158 0.00 0.00 40.22 5.80 F
4371 7318 1.142060 TCCACAAGGTTTCATCCACGT 59.858 47.619 0.00 0.00 35.89 4.49 F
5579 8747 2.236395 GCCAGGTCTCTGCCTAACTTTA 59.764 50.000 0.00 0.00 39.61 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 4268 0.035056 AGCAATGCTAGTGTGACCCC 60.035 55.000 5.69 0.00 36.99 4.95 R
2316 4408 1.021968 GTGAACAGACCACCACCAAC 58.978 55.000 0.00 0.00 0.00 3.77 R
2381 4473 1.404717 CGAACAGGACCACCATCTCAG 60.405 57.143 0.00 0.00 38.94 3.35 R
3208 5308 0.035439 GAATGCCCTCCCGAAGTGAA 60.035 55.000 0.00 0.00 0.00 3.18 R
4100 7043 5.277857 AGTACCCTCGGTCTCATTATTTG 57.722 43.478 0.00 0.00 37.09 2.32 R
4543 7493 6.128526 GCACATAGCCTTCGACCTAAAATATC 60.129 42.308 0.00 0.00 37.23 1.63 R
5232 8400 6.198650 TCAACATTATCATTGGTGCTTGAG 57.801 37.500 0.00 0.00 31.71 3.02 R
5704 8875 0.737715 CTGCGTCTTAGGACAGGTGC 60.738 60.000 5.77 1.04 42.21 5.01 R
6623 9794 2.061220 CTCCTCCAGCAAGGTCACA 58.939 57.895 0.42 0.00 37.69 3.58 R
7358 10552 0.880441 TCATGACAACAACATGCGGG 59.120 50.000 0.00 0.00 43.03 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 4.323477 GTACAGTGTGGCGCCCCA 62.323 66.667 26.77 17.94 39.32 4.96
126 128 1.926511 GCTAGGCGCTGCACAAACAT 61.927 55.000 7.64 0.00 35.14 2.71
140 142 6.417327 TGCACAAACATTTAGCGAAATTTTG 58.583 32.000 22.54 22.54 38.03 2.44
150 152 1.542328 GCGAAATTTTGGGCCCAAACT 60.542 47.619 43.11 36.12 44.39 2.66
154 156 2.043307 ATTTTGGGCCCAAACTGGAT 57.957 45.000 43.11 31.76 44.39 3.41
196 198 2.159240 TGGATAGCTACAGACTTGTGCG 60.159 50.000 0.00 0.00 38.23 5.34
199 201 2.730672 GCTACAGACTTGTGCGGCG 61.731 63.158 0.51 0.51 38.23 6.46
259 261 0.389817 CTGCTAGGCGTTGCACTGTA 60.390 55.000 11.41 0.00 35.20 2.74
274 276 4.016706 GTACAGTGTGGCGCCCCT 62.017 66.667 26.77 14.57 0.00 4.79
275 277 2.284039 TACAGTGTGGCGCCCCTA 60.284 61.111 26.77 7.20 0.00 3.53
277 279 4.473520 CAGTGTGGCGCCCCTAGG 62.474 72.222 26.77 7.09 0.00 3.02
298 2357 2.747799 GCTAGGCAAGATTTGGGAGAGG 60.748 54.545 0.00 0.00 0.00 3.69
361 2420 2.291024 GGAGAGAGTGGGAGAGTGTGTA 60.291 54.545 0.00 0.00 0.00 2.90
367 2426 1.687123 GTGGGAGAGTGTGTAGTGTGT 59.313 52.381 0.00 0.00 0.00 3.72
409 2470 2.787473 CCAAGTGGCTGGATAAGTCA 57.213 50.000 0.00 0.00 38.51 3.41
415 2476 1.339055 TGGCTGGATAAGTCACAGTGC 60.339 52.381 0.00 0.00 34.88 4.40
424 2485 2.048222 TCACAGTGCAGCGCCTAC 60.048 61.111 2.29 0.01 0.00 3.18
425 2486 3.481903 CACAGTGCAGCGCCTACG 61.482 66.667 2.29 0.52 44.07 3.51
461 2522 0.611200 TTACATGTGTGGCGCCTAGT 59.389 50.000 29.70 17.83 0.00 2.57
515 2576 3.625897 CTGCCACGGTGGACAGGA 61.626 66.667 30.65 3.73 40.96 3.86
524 2585 2.280797 TGGACAGGAGTGCAACGC 60.281 61.111 0.00 0.00 43.50 4.84
622 2683 1.608590 AGTTTCGCACCCAGTTCATTG 59.391 47.619 0.00 0.00 0.00 2.82
723 2788 3.977244 CCCACGCAGCACCCAAAC 61.977 66.667 0.00 0.00 0.00 2.93
921 2996 3.554692 CCCATCGACGCGCTCAAC 61.555 66.667 5.73 0.00 0.00 3.18
948 3023 2.047844 TCGCAGCTGCTCCTGAAC 60.048 61.111 34.22 5.37 39.32 3.18
958 3037 3.883744 CTCCTGAACGCACGGCCTT 62.884 63.158 0.00 0.00 0.00 4.35
1197 3282 4.899239 GCCATGGACGAGGAGGCG 62.899 72.222 18.40 0.00 35.42 5.52
1218 3303 2.125912 CCCAACACGAGCGAGGAG 60.126 66.667 0.00 0.00 0.00 3.69
1787 3872 7.907214 ATTTCTCGCTAATCACTTTGTAACT 57.093 32.000 0.00 0.00 0.00 2.24
1897 3985 3.007614 GGGCCAGAGTAGTTGACAACTTA 59.992 47.826 25.10 9.33 42.81 2.24
1903 3991 7.576236 CCAGAGTAGTTGACAACTTAACATTG 58.424 38.462 25.10 17.56 42.81 2.82
1928 4016 4.357918 AGTGGTGTTGAATAAGTCTGCT 57.642 40.909 0.00 0.00 0.00 4.24
1935 4023 6.018994 GGTGTTGAATAAGTCTGCTAATACCG 60.019 42.308 0.00 0.00 0.00 4.02
2070 4162 4.769859 ACGGAAGTTTGAGAGACTAGTC 57.230 45.455 15.41 15.41 46.40 2.59
2152 4244 6.465084 AGAACTAGTTATTCTGTTCACCACC 58.535 40.000 8.42 0.00 37.03 4.61
2173 4265 7.014230 ACCACCATTGCTATTTAATCACCATAC 59.986 37.037 0.00 0.00 0.00 2.39
2176 4268 7.231317 ACCATTGCTATTTAATCACCATACCTG 59.769 37.037 0.00 0.00 0.00 4.00
2298 4390 6.042638 TGCTCTCAATGCTAGTCTTTAGTT 57.957 37.500 0.00 0.00 0.00 2.24
2361 4453 1.384502 CCCCTCCTGATACCAGCCA 60.385 63.158 0.00 0.00 39.07 4.75
2381 4473 4.365723 CCATTAGATCTGTTGCAAATGGC 58.634 43.478 16.17 0.00 37.59 4.40
2395 4487 0.257039 AATGGCTGAGATGGTGGTCC 59.743 55.000 0.00 0.00 0.00 4.46
2427 4519 8.301002 GCTACCAAAGTTGTGATAAAATTACCA 58.699 33.333 0.00 0.00 0.00 3.25
2536 4628 1.940613 GGTGGTTGGAGAATGCGTATC 59.059 52.381 0.00 0.00 0.00 2.24
2773 4866 7.505585 CACCACCACCAACTCCAATTTATATAT 59.494 37.037 0.00 0.00 0.00 0.86
2775 4868 7.723616 CCACCACCAACTCCAATTTATATATGA 59.276 37.037 0.00 0.00 0.00 2.15
2776 4869 9.300681 CACCACCAACTCCAATTTATATATGAT 57.699 33.333 0.00 0.00 0.00 2.45
2846 4944 1.997606 GGAAACAACGAGGGTATCACG 59.002 52.381 0.00 0.00 0.00 4.35
2866 4964 7.050970 TCACGTAGGATAAGTTTAGCATCAT 57.949 36.000 0.00 0.00 28.42 2.45
2893 4991 1.057275 TGTGGCTCAACCTGTGGGTA 61.057 55.000 0.00 0.00 46.67 3.69
2981 5081 6.561737 TGAGATTCTCAGCCGTAGTATAAG 57.438 41.667 12.38 0.00 35.39 1.73
2982 5082 5.473846 TGAGATTCTCAGCCGTAGTATAAGG 59.526 44.000 12.38 0.00 38.19 2.69
2988 5088 2.737503 CCGTAGTATAAGGCCCCGT 58.262 57.895 0.00 0.00 32.34 5.28
2989 5089 1.043022 CCGTAGTATAAGGCCCCGTT 58.957 55.000 0.00 0.00 32.34 4.44
2990 5090 1.000171 CCGTAGTATAAGGCCCCGTTC 60.000 57.143 0.00 0.00 32.34 3.95
2991 5091 1.959282 CGTAGTATAAGGCCCCGTTCT 59.041 52.381 0.00 0.00 0.00 3.01
2992 5092 2.288030 CGTAGTATAAGGCCCCGTTCTG 60.288 54.545 0.00 0.00 0.00 3.02
2993 5093 2.170012 AGTATAAGGCCCCGTTCTGA 57.830 50.000 0.00 0.00 0.00 3.27
2994 5094 2.690840 AGTATAAGGCCCCGTTCTGAT 58.309 47.619 0.00 0.00 0.00 2.90
2995 5095 2.633481 AGTATAAGGCCCCGTTCTGATC 59.367 50.000 0.00 0.00 0.00 2.92
2996 5096 1.807814 ATAAGGCCCCGTTCTGATCT 58.192 50.000 0.00 0.00 0.00 2.75
2997 5097 1.580059 TAAGGCCCCGTTCTGATCTT 58.420 50.000 0.00 0.00 0.00 2.40
2998 5098 0.253327 AAGGCCCCGTTCTGATCTTC 59.747 55.000 0.00 0.00 0.00 2.87
2999 5099 0.618968 AGGCCCCGTTCTGATCTTCT 60.619 55.000 0.00 0.00 0.00 2.85
3000 5100 0.179070 GGCCCCGTTCTGATCTTCTC 60.179 60.000 0.00 0.00 0.00 2.87
3001 5101 0.179070 GCCCCGTTCTGATCTTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
3002 5102 0.103208 CCCCGTTCTGATCTTCTCCG 59.897 60.000 0.00 0.00 0.00 4.63
3003 5103 0.103208 CCCGTTCTGATCTTCTCCGG 59.897 60.000 0.00 0.00 0.00 5.14
3004 5104 0.528684 CCGTTCTGATCTTCTCCGGC 60.529 60.000 0.00 0.00 0.00 6.13
3005 5105 0.457851 CGTTCTGATCTTCTCCGGCT 59.542 55.000 0.00 0.00 0.00 5.52
3006 5106 1.134965 CGTTCTGATCTTCTCCGGCTT 60.135 52.381 0.00 0.00 0.00 4.35
3007 5107 2.545731 GTTCTGATCTTCTCCGGCTTC 58.454 52.381 0.00 0.00 0.00 3.86
3008 5108 1.852633 TCTGATCTTCTCCGGCTTCA 58.147 50.000 0.00 0.00 0.00 3.02
3009 5109 2.392662 TCTGATCTTCTCCGGCTTCAT 58.607 47.619 0.00 0.00 0.00 2.57
3010 5110 2.768527 TCTGATCTTCTCCGGCTTCATT 59.231 45.455 0.00 0.00 0.00 2.57
3011 5111 2.871022 CTGATCTTCTCCGGCTTCATTG 59.129 50.000 0.00 0.00 0.00 2.82
3012 5112 2.501316 TGATCTTCTCCGGCTTCATTGA 59.499 45.455 0.00 0.00 0.00 2.57
3013 5113 3.055167 TGATCTTCTCCGGCTTCATTGAA 60.055 43.478 0.00 0.00 0.00 2.69
3014 5114 3.634397 TCTTCTCCGGCTTCATTGAAT 57.366 42.857 0.00 0.00 0.00 2.57
3015 5115 4.753516 TCTTCTCCGGCTTCATTGAATA 57.246 40.909 0.00 0.00 0.00 1.75
3016 5116 4.697514 TCTTCTCCGGCTTCATTGAATAG 58.302 43.478 0.00 0.00 0.00 1.73
3017 5117 2.838736 TCTCCGGCTTCATTGAATAGC 58.161 47.619 0.00 0.59 0.00 2.97
3024 5124 3.962423 GCTTCATTGAATAGCCAGCTTC 58.038 45.455 0.00 0.00 0.00 3.86
3025 5125 3.243334 GCTTCATTGAATAGCCAGCTTCC 60.243 47.826 0.00 0.00 0.00 3.46
3026 5126 2.936202 TCATTGAATAGCCAGCTTCCC 58.064 47.619 0.00 0.00 0.00 3.97
3027 5127 1.605710 CATTGAATAGCCAGCTTCCCG 59.394 52.381 0.00 0.00 0.00 5.14
3028 5128 0.908910 TTGAATAGCCAGCTTCCCGA 59.091 50.000 0.00 0.00 0.00 5.14
3029 5129 0.465705 TGAATAGCCAGCTTCCCGAG 59.534 55.000 0.00 0.00 0.00 4.63
3030 5130 0.753262 GAATAGCCAGCTTCCCGAGA 59.247 55.000 0.00 0.00 0.00 4.04
3031 5131 1.139058 GAATAGCCAGCTTCCCGAGAA 59.861 52.381 0.00 0.00 0.00 2.87
3039 5139 1.066587 CTTCCCGAGAAGCTAGCCG 59.933 63.158 12.13 7.66 42.97 5.52
3040 5140 2.962697 CTTCCCGAGAAGCTAGCCGC 62.963 65.000 12.13 3.41 42.97 6.53
3041 5141 4.593864 CCCGAGAAGCTAGCCGCC 62.594 72.222 12.13 0.35 40.39 6.13
3042 5142 4.933064 CCGAGAAGCTAGCCGCCG 62.933 72.222 12.13 10.04 40.39 6.46
3057 5157 4.530857 CCGCCAGCTTCCTACGGG 62.531 72.222 0.00 0.00 36.72 5.28
3058 5158 3.458163 CGCCAGCTTCCTACGGGA 61.458 66.667 0.00 0.00 40.36 5.14
3059 5159 2.501610 GCCAGCTTCCTACGGGAG 59.498 66.667 0.00 0.00 43.29 4.30
3060 5160 2.501610 CCAGCTTCCTACGGGAGC 59.498 66.667 4.98 4.98 43.29 4.70
3061 5161 2.359169 CCAGCTTCCTACGGGAGCA 61.359 63.158 15.20 0.00 43.29 4.26
3062 5162 1.142748 CAGCTTCCTACGGGAGCAG 59.857 63.158 15.20 3.61 43.29 4.24
3063 5163 2.060980 AGCTTCCTACGGGAGCAGG 61.061 63.158 15.20 0.00 45.16 4.85
3067 5167 3.956377 CCTACGGGAGCAGGATGT 58.044 61.111 0.00 0.00 46.84 3.06
3068 5168 1.443407 CCTACGGGAGCAGGATGTG 59.557 63.158 0.00 0.00 46.84 3.21
3069 5169 1.330655 CCTACGGGAGCAGGATGTGT 61.331 60.000 0.00 0.00 46.84 3.72
3070 5170 0.537188 CTACGGGAGCAGGATGTGTT 59.463 55.000 0.00 0.00 39.31 3.32
3071 5171 0.535335 TACGGGAGCAGGATGTGTTC 59.465 55.000 0.00 0.00 39.31 3.18
3072 5172 1.296392 CGGGAGCAGGATGTGTTCA 59.704 57.895 0.00 0.00 38.12 3.18
3073 5173 0.742281 CGGGAGCAGGATGTGTTCAG 60.742 60.000 0.00 0.00 38.12 3.02
3074 5174 1.028868 GGGAGCAGGATGTGTTCAGC 61.029 60.000 0.00 0.00 38.12 4.26
3075 5175 0.321919 GGAGCAGGATGTGTTCAGCA 60.322 55.000 0.00 0.00 38.12 4.41
3076 5176 1.085091 GAGCAGGATGTGTTCAGCAG 58.915 55.000 0.00 0.00 39.31 4.24
3077 5177 0.959372 AGCAGGATGTGTTCAGCAGC 60.959 55.000 0.00 0.00 39.31 5.25
3078 5178 0.959372 GCAGGATGTGTTCAGCAGCT 60.959 55.000 0.00 0.00 39.31 4.24
3079 5179 1.085091 CAGGATGTGTTCAGCAGCTC 58.915 55.000 0.00 0.00 0.00 4.09
3080 5180 0.982704 AGGATGTGTTCAGCAGCTCT 59.017 50.000 0.00 0.00 0.00 4.09
3081 5181 1.085091 GGATGTGTTCAGCAGCTCTG 58.915 55.000 0.00 6.79 44.21 3.35
3093 5193 3.296851 GCTCTGAGCAGCTCCAGA 58.703 61.111 24.02 18.93 41.89 3.86
3094 5194 1.824658 GCTCTGAGCAGCTCCAGAT 59.175 57.895 24.02 0.00 41.89 2.90
3095 5195 0.178533 GCTCTGAGCAGCTCCAGATT 59.821 55.000 24.02 0.00 41.89 2.40
3096 5196 1.407162 GCTCTGAGCAGCTCCAGATTT 60.407 52.381 24.02 0.00 41.89 2.17
3097 5197 2.940527 GCTCTGAGCAGCTCCAGATTTT 60.941 50.000 24.02 0.00 41.89 1.82
3098 5198 2.937799 CTCTGAGCAGCTCCAGATTTTC 59.062 50.000 20.16 0.00 0.00 2.29
3099 5199 2.015587 CTGAGCAGCTCCAGATTTTCC 58.984 52.381 20.16 0.00 0.00 3.13
3100 5200 1.340405 TGAGCAGCTCCAGATTTTCCC 60.340 52.381 20.16 0.00 0.00 3.97
3101 5201 0.700564 AGCAGCTCCAGATTTTCCCA 59.299 50.000 0.00 0.00 0.00 4.37
3102 5202 1.076024 AGCAGCTCCAGATTTTCCCAA 59.924 47.619 0.00 0.00 0.00 4.12
3103 5203 1.203287 GCAGCTCCAGATTTTCCCAAC 59.797 52.381 0.00 0.00 0.00 3.77
3104 5204 2.800250 CAGCTCCAGATTTTCCCAACT 58.200 47.619 0.00 0.00 0.00 3.16
3105 5205 2.751806 CAGCTCCAGATTTTCCCAACTC 59.248 50.000 0.00 0.00 0.00 3.01
3106 5206 2.646798 AGCTCCAGATTTTCCCAACTCT 59.353 45.455 0.00 0.00 0.00 3.24
3107 5207 3.013219 GCTCCAGATTTTCCCAACTCTC 58.987 50.000 0.00 0.00 0.00 3.20
3108 5208 3.615155 CTCCAGATTTTCCCAACTCTCC 58.385 50.000 0.00 0.00 0.00 3.71
3109 5209 2.308866 TCCAGATTTTCCCAACTCTCCC 59.691 50.000 0.00 0.00 0.00 4.30
3110 5210 2.310052 CCAGATTTTCCCAACTCTCCCT 59.690 50.000 0.00 0.00 0.00 4.20
3111 5211 3.615155 CAGATTTTCCCAACTCTCCCTC 58.385 50.000 0.00 0.00 0.00 4.30
3112 5212 3.009473 CAGATTTTCCCAACTCTCCCTCA 59.991 47.826 0.00 0.00 0.00 3.86
3113 5213 3.265479 AGATTTTCCCAACTCTCCCTCAG 59.735 47.826 0.00 0.00 0.00 3.35
3114 5214 0.693049 TTTCCCAACTCTCCCTCAGC 59.307 55.000 0.00 0.00 0.00 4.26
3115 5215 0.473694 TTCCCAACTCTCCCTCAGCA 60.474 55.000 0.00 0.00 0.00 4.41
3116 5216 0.252881 TCCCAACTCTCCCTCAGCAT 60.253 55.000 0.00 0.00 0.00 3.79
3117 5217 0.107312 CCCAACTCTCCCTCAGCATG 60.107 60.000 0.00 0.00 37.54 4.06
3118 5218 0.107312 CCAACTCTCCCTCAGCATGG 60.107 60.000 0.00 0.00 36.16 3.66
3119 5219 0.107312 CAACTCTCCCTCAGCATGGG 60.107 60.000 0.00 2.67 45.90 4.00
3120 5220 1.919600 AACTCTCCCTCAGCATGGGC 61.920 60.000 0.00 0.00 44.23 5.36
3121 5221 3.092511 TCTCCCTCAGCATGGGCC 61.093 66.667 0.00 0.00 44.23 5.80
3122 5222 3.414193 CTCCCTCAGCATGGGCCA 61.414 66.667 9.61 9.61 44.23 5.36
3123 5223 3.414193 TCCCTCAGCATGGGCCAG 61.414 66.667 13.78 5.44 44.23 4.85
3125 5225 4.435970 CCTCAGCATGGGCCAGCA 62.436 66.667 23.65 0.29 42.56 4.41
3126 5226 2.829003 CTCAGCATGGGCCAGCAG 60.829 66.667 23.65 17.97 42.56 4.24
3145 5245 4.606071 CCACGAAGGGAGCTTGAG 57.394 61.111 0.00 0.00 0.00 3.02
3146 5246 1.078848 CCACGAAGGGAGCTTGAGG 60.079 63.158 0.00 0.00 0.00 3.86
3147 5247 1.743252 CACGAAGGGAGCTTGAGGC 60.743 63.158 0.00 0.00 42.19 4.70
3148 5248 2.124942 CGAAGGGAGCTTGAGGCC 60.125 66.667 0.00 0.00 43.05 5.19
3149 5249 2.273776 GAAGGGAGCTTGAGGCCC 59.726 66.667 0.00 0.00 43.05 5.80
3150 5250 2.532715 AAGGGAGCTTGAGGCCCA 60.533 61.111 9.94 0.00 44.55 5.36
3151 5251 2.549169 GAAGGGAGCTTGAGGCCCAG 62.549 65.000 9.94 0.00 44.55 4.45
3152 5252 3.334054 GGGAGCTTGAGGCCCAGT 61.334 66.667 0.00 0.00 41.64 4.00
3153 5253 2.759795 GGAGCTTGAGGCCCAGTT 59.240 61.111 0.00 0.00 43.05 3.16
3154 5254 1.075659 GGAGCTTGAGGCCCAGTTT 59.924 57.895 0.00 0.00 43.05 2.66
3155 5255 1.246737 GGAGCTTGAGGCCCAGTTTG 61.247 60.000 0.00 0.00 43.05 2.93
3156 5256 0.250901 GAGCTTGAGGCCCAGTTTGA 60.251 55.000 0.00 0.00 43.05 2.69
3157 5257 0.407139 AGCTTGAGGCCCAGTTTGAT 59.593 50.000 0.00 0.00 43.05 2.57
3158 5258 0.529378 GCTTGAGGCCCAGTTTGATG 59.471 55.000 0.00 0.00 34.27 3.07
3159 5259 1.180029 CTTGAGGCCCAGTTTGATGG 58.820 55.000 0.00 0.00 40.29 3.51
3160 5260 0.899717 TTGAGGCCCAGTTTGATGGC 60.900 55.000 0.00 0.00 44.59 4.40
3161 5261 1.000396 GAGGCCCAGTTTGATGGCT 60.000 57.895 0.00 0.00 44.71 4.75
3162 5262 1.000396 AGGCCCAGTTTGATGGCTC 60.000 57.895 0.00 0.00 44.71 4.70
3163 5263 2.409870 GGCCCAGTTTGATGGCTCG 61.410 63.158 0.00 0.00 44.71 5.03
3164 5264 1.675641 GCCCAGTTTGATGGCTCGT 60.676 57.895 0.00 0.00 42.01 4.18
3165 5265 0.392461 GCCCAGTTTGATGGCTCGTA 60.392 55.000 0.00 0.00 42.01 3.43
3166 5266 1.948611 GCCCAGTTTGATGGCTCGTAA 60.949 52.381 0.00 0.00 42.01 3.18
3167 5267 1.737793 CCCAGTTTGATGGCTCGTAAC 59.262 52.381 0.00 0.00 39.17 2.50
3168 5268 1.393539 CCAGTTTGATGGCTCGTAACG 59.606 52.381 0.00 0.00 32.48 3.18
3169 5269 2.333926 CAGTTTGATGGCTCGTAACGA 58.666 47.619 0.00 0.00 0.00 3.85
3181 5281 3.996150 TCGTAACGAGAGGAAAACTGT 57.004 42.857 0.00 0.00 0.00 3.55
3182 5282 4.311816 TCGTAACGAGAGGAAAACTGTT 57.688 40.909 0.00 0.00 0.00 3.16
3183 5283 4.293415 TCGTAACGAGAGGAAAACTGTTC 58.707 43.478 0.00 0.00 0.00 3.18
3184 5284 3.119136 CGTAACGAGAGGAAAACTGTTCG 59.881 47.826 0.00 0.00 38.29 3.95
3185 5285 3.447918 AACGAGAGGAAAACTGTTCGA 57.552 42.857 3.17 0.00 36.76 3.71
3186 5286 3.662247 ACGAGAGGAAAACTGTTCGAT 57.338 42.857 3.17 0.00 36.76 3.59
3187 5287 3.576648 ACGAGAGGAAAACTGTTCGATC 58.423 45.455 3.17 0.00 36.76 3.69
3188 5288 3.005472 ACGAGAGGAAAACTGTTCGATCA 59.995 43.478 3.17 0.00 36.76 2.92
3189 5289 3.610242 CGAGAGGAAAACTGTTCGATCAG 59.390 47.826 19.56 19.56 40.80 2.90
3190 5290 4.616143 CGAGAGGAAAACTGTTCGATCAGA 60.616 45.833 26.24 0.00 38.63 3.27
3191 5291 4.815269 AGAGGAAAACTGTTCGATCAGAG 58.185 43.478 26.24 5.15 38.63 3.35
3192 5292 4.524714 AGAGGAAAACTGTTCGATCAGAGA 59.475 41.667 26.24 0.00 38.63 3.10
3193 5293 5.011125 AGAGGAAAACTGTTCGATCAGAGAA 59.989 40.000 26.24 0.00 38.63 2.87
3194 5294 5.611374 AGGAAAACTGTTCGATCAGAGAAA 58.389 37.500 26.24 0.00 38.63 2.52
3195 5295 6.055588 AGGAAAACTGTTCGATCAGAGAAAA 58.944 36.000 26.24 0.00 38.63 2.29
3196 5296 6.542370 AGGAAAACTGTTCGATCAGAGAAAAA 59.458 34.615 26.24 0.00 38.63 1.94
3197 5297 6.633234 GGAAAACTGTTCGATCAGAGAAAAAC 59.367 38.462 26.24 11.95 38.63 2.43
3198 5298 4.974103 ACTGTTCGATCAGAGAAAAACG 57.026 40.909 26.24 1.92 38.63 3.60
3199 5299 3.741344 ACTGTTCGATCAGAGAAAAACGG 59.259 43.478 26.24 7.11 38.63 4.44
3200 5300 3.724374 TGTTCGATCAGAGAAAAACGGT 58.276 40.909 0.00 0.00 0.00 4.83
3201 5301 4.124238 TGTTCGATCAGAGAAAAACGGTT 58.876 39.130 0.00 0.00 0.00 4.44
3202 5302 4.573201 TGTTCGATCAGAGAAAAACGGTTT 59.427 37.500 0.00 0.00 0.00 3.27
3203 5303 4.725556 TCGATCAGAGAAAAACGGTTTG 57.274 40.909 6.92 0.00 0.00 2.93
3204 5304 4.373527 TCGATCAGAGAAAAACGGTTTGA 58.626 39.130 6.92 0.00 0.00 2.69
3205 5305 4.447724 TCGATCAGAGAAAAACGGTTTGAG 59.552 41.667 6.92 0.00 0.00 3.02
3206 5306 4.377431 CGATCAGAGAAAAACGGTTTGAGG 60.377 45.833 6.92 0.00 0.00 3.86
3207 5307 4.145365 TCAGAGAAAAACGGTTTGAGGA 57.855 40.909 6.92 0.00 0.00 3.71
3208 5308 4.714632 TCAGAGAAAAACGGTTTGAGGAT 58.285 39.130 6.92 0.00 0.00 3.24
3209 5309 5.130350 TCAGAGAAAAACGGTTTGAGGATT 58.870 37.500 6.92 0.00 0.00 3.01
3210 5310 5.238650 TCAGAGAAAAACGGTTTGAGGATTC 59.761 40.000 6.92 6.85 0.00 2.52
3211 5311 5.008613 CAGAGAAAAACGGTTTGAGGATTCA 59.991 40.000 6.92 0.00 0.00 2.57
3212 5312 5.008712 AGAGAAAAACGGTTTGAGGATTCAC 59.991 40.000 6.92 5.74 31.71 3.18
3213 5313 4.887655 AGAAAAACGGTTTGAGGATTCACT 59.112 37.500 6.92 0.00 31.71 3.41
3214 5314 5.359860 AGAAAAACGGTTTGAGGATTCACTT 59.640 36.000 6.92 0.00 31.71 3.16
3215 5315 4.830826 AAACGGTTTGAGGATTCACTTC 57.169 40.909 5.12 0.00 31.71 3.01
3216 5316 2.413837 ACGGTTTGAGGATTCACTTCG 58.586 47.619 0.00 0.00 31.71 3.79
3217 5317 1.732259 CGGTTTGAGGATTCACTTCGG 59.268 52.381 0.00 0.00 31.71 4.30
3218 5318 2.084546 GGTTTGAGGATTCACTTCGGG 58.915 52.381 0.00 0.00 31.71 5.14
3219 5319 2.290071 GGTTTGAGGATTCACTTCGGGA 60.290 50.000 0.00 0.00 31.71 5.14
3220 5320 3.003480 GTTTGAGGATTCACTTCGGGAG 58.997 50.000 0.00 0.00 31.71 4.30
3221 5321 1.195115 TGAGGATTCACTTCGGGAGG 58.805 55.000 0.00 0.00 0.00 4.30
3222 5322 0.466124 GAGGATTCACTTCGGGAGGG 59.534 60.000 0.00 0.00 0.00 4.30
3223 5323 1.153147 GGATTCACTTCGGGAGGGC 60.153 63.158 0.00 0.00 0.00 5.19
3224 5324 1.602237 GATTCACTTCGGGAGGGCA 59.398 57.895 0.00 0.00 0.00 5.36
3225 5325 0.181350 GATTCACTTCGGGAGGGCAT 59.819 55.000 0.00 0.00 0.00 4.40
3226 5326 0.625849 ATTCACTTCGGGAGGGCATT 59.374 50.000 0.00 0.00 0.00 3.56
3227 5327 0.035439 TTCACTTCGGGAGGGCATTC 60.035 55.000 0.00 0.00 0.00 2.67
3228 5328 1.452108 CACTTCGGGAGGGCATTCC 60.452 63.158 0.00 0.00 36.46 3.01
3243 5343 6.241645 AGGGCATTCCTATGTAATTTAGAGC 58.758 40.000 0.00 0.00 45.98 4.09
3244 5344 6.003950 GGGCATTCCTATGTAATTTAGAGCA 58.996 40.000 0.00 0.00 34.12 4.26
3245 5345 6.490040 GGGCATTCCTATGTAATTTAGAGCAA 59.510 38.462 0.00 0.00 34.12 3.91
3246 5346 7.363431 GGCATTCCTATGTAATTTAGAGCAAC 58.637 38.462 0.00 0.00 34.12 4.17
3247 5347 7.229506 GGCATTCCTATGTAATTTAGAGCAACT 59.770 37.037 0.00 0.00 34.12 3.16
3248 5348 8.624776 GCATTCCTATGTAATTTAGAGCAACTT 58.375 33.333 0.00 0.00 34.12 2.66
3250 5350 8.732746 TTCCTATGTAATTTAGAGCAACTTCC 57.267 34.615 0.00 0.00 0.00 3.46
3251 5351 7.857456 TCCTATGTAATTTAGAGCAACTTCCA 58.143 34.615 0.00 0.00 0.00 3.53
3252 5352 7.769044 TCCTATGTAATTTAGAGCAACTTCCAC 59.231 37.037 0.00 0.00 0.00 4.02
3253 5353 7.770897 CCTATGTAATTTAGAGCAACTTCCACT 59.229 37.037 0.00 0.00 0.00 4.00
3254 5354 9.167311 CTATGTAATTTAGAGCAACTTCCACTT 57.833 33.333 0.00 0.00 0.00 3.16
3255 5355 7.435068 TGTAATTTAGAGCAACTTCCACTTC 57.565 36.000 0.00 0.00 0.00 3.01
3256 5356 7.224297 TGTAATTTAGAGCAACTTCCACTTCT 58.776 34.615 0.00 0.00 0.00 2.85
3257 5357 6.566197 AATTTAGAGCAACTTCCACTTCTG 57.434 37.500 0.00 0.00 0.00 3.02
3258 5358 2.557920 AGAGCAACTTCCACTTCTGG 57.442 50.000 0.00 0.00 39.23 3.86
3259 5359 1.771255 AGAGCAACTTCCACTTCTGGT 59.229 47.619 0.00 0.00 38.90 4.00
3260 5360 2.173569 AGAGCAACTTCCACTTCTGGTT 59.826 45.455 0.00 0.00 38.90 3.67
3261 5361 2.952310 GAGCAACTTCCACTTCTGGTTT 59.048 45.455 0.00 0.00 38.90 3.27
3262 5362 3.365472 AGCAACTTCCACTTCTGGTTTT 58.635 40.909 0.00 0.00 38.90 2.43
3263 5363 3.769300 AGCAACTTCCACTTCTGGTTTTT 59.231 39.130 0.00 0.00 38.90 1.94
3264 5364 4.953579 AGCAACTTCCACTTCTGGTTTTTA 59.046 37.500 0.00 0.00 38.90 1.52
3265 5365 5.598417 AGCAACTTCCACTTCTGGTTTTTAT 59.402 36.000 0.00 0.00 38.90 1.40
3266 5366 5.691754 GCAACTTCCACTTCTGGTTTTTATG 59.308 40.000 0.00 0.00 38.90 1.90
3267 5367 6.460953 GCAACTTCCACTTCTGGTTTTTATGA 60.461 38.462 0.00 0.00 38.90 2.15
3268 5368 7.488322 CAACTTCCACTTCTGGTTTTTATGAA 58.512 34.615 0.00 0.00 38.90 2.57
3269 5369 7.277174 ACTTCCACTTCTGGTTTTTATGAAG 57.723 36.000 0.00 0.00 40.97 3.02
3270 5370 5.705609 TCCACTTCTGGTTTTTATGAAGC 57.294 39.130 0.00 0.00 39.39 3.86
3271 5371 5.385198 TCCACTTCTGGTTTTTATGAAGCT 58.615 37.500 0.00 0.00 39.39 3.74
3272 5372 6.539173 TCCACTTCTGGTTTTTATGAAGCTA 58.461 36.000 0.00 0.00 39.39 3.32
3273 5373 6.430000 TCCACTTCTGGTTTTTATGAAGCTAC 59.570 38.462 0.00 0.00 39.39 3.58
3274 5374 6.307155 CACTTCTGGTTTTTATGAAGCTACG 58.693 40.000 0.00 0.00 39.39 3.51
3275 5375 4.939509 TCTGGTTTTTATGAAGCTACGC 57.060 40.909 0.00 0.00 0.00 4.42
3276 5376 4.575885 TCTGGTTTTTATGAAGCTACGCT 58.424 39.130 0.00 0.00 42.56 5.07
3284 5384 2.815647 AAGCTACGCTTCCGCTGC 60.816 61.111 0.00 0.00 46.77 5.25
3285 5385 3.302347 AAGCTACGCTTCCGCTGCT 62.302 57.895 0.00 0.00 46.77 4.24
3286 5386 2.788191 AAGCTACGCTTCCGCTGCTT 62.788 55.000 0.00 9.26 46.77 3.91
3287 5387 2.803713 GCTACGCTTCCGCTGCTTC 61.804 63.158 0.00 0.00 38.22 3.86
3288 5388 1.446099 CTACGCTTCCGCTGCTTCA 60.446 57.895 0.00 0.00 38.22 3.02
3289 5389 1.416813 CTACGCTTCCGCTGCTTCAG 61.417 60.000 0.00 0.00 38.22 3.02
3290 5390 1.873270 TACGCTTCCGCTGCTTCAGA 61.873 55.000 0.00 0.00 38.22 3.27
3291 5391 2.029288 CGCTTCCGCTGCTTCAGAA 61.029 57.895 0.00 0.00 32.44 3.02
3292 5392 1.568612 CGCTTCCGCTGCTTCAGAAA 61.569 55.000 0.00 0.00 32.44 2.52
3293 5393 0.807496 GCTTCCGCTGCTTCAGAAAT 59.193 50.000 0.00 0.00 32.44 2.17
3294 5394 1.200948 GCTTCCGCTGCTTCAGAAATT 59.799 47.619 0.00 0.00 32.44 1.82
3295 5395 2.352127 GCTTCCGCTGCTTCAGAAATTT 60.352 45.455 0.00 0.00 32.44 1.82
3296 5396 2.995466 TCCGCTGCTTCAGAAATTTG 57.005 45.000 0.00 0.00 32.44 2.32
3297 5397 1.068333 TCCGCTGCTTCAGAAATTTGC 60.068 47.619 0.00 0.00 32.44 3.68
3298 5398 1.336148 CCGCTGCTTCAGAAATTTGCA 60.336 47.619 0.00 0.00 32.44 4.08
3299 5399 2.602878 CGCTGCTTCAGAAATTTGCAT 58.397 42.857 0.00 0.00 32.44 3.96
3300 5400 2.991190 CGCTGCTTCAGAAATTTGCATT 59.009 40.909 0.00 0.00 32.44 3.56
3301 5401 3.181534 CGCTGCTTCAGAAATTTGCATTG 60.182 43.478 0.00 0.00 32.44 2.82
3302 5402 3.424433 GCTGCTTCAGAAATTTGCATTGC 60.424 43.478 0.46 0.46 32.44 3.56
3303 5403 2.732500 TGCTTCAGAAATTTGCATTGCG 59.267 40.909 3.84 0.00 0.00 4.85
3304 5404 2.093152 GCTTCAGAAATTTGCATTGCGG 59.907 45.455 3.84 0.00 0.00 5.69
3305 5405 2.367030 TCAGAAATTTGCATTGCGGG 57.633 45.000 3.84 0.00 0.00 6.13
3306 5406 0.722848 CAGAAATTTGCATTGCGGGC 59.277 50.000 3.84 0.00 0.00 6.13
3307 5407 0.609662 AGAAATTTGCATTGCGGGCT 59.390 45.000 3.84 0.00 0.00 5.19
3308 5408 0.722848 GAAATTTGCATTGCGGGCTG 59.277 50.000 3.84 0.00 0.00 4.85
3309 5409 1.300266 AAATTTGCATTGCGGGCTGC 61.300 50.000 12.43 12.43 46.70 5.25
3310 5410 2.175035 AATTTGCATTGCGGGCTGCT 62.175 50.000 20.66 0.00 46.63 4.24
3311 5411 2.567564 ATTTGCATTGCGGGCTGCTC 62.568 55.000 20.66 6.67 46.63 4.26
3312 5412 4.728110 TGCATTGCGGGCTGCTCT 62.728 61.111 20.66 3.43 46.63 4.09
3313 5413 3.446570 GCATTGCGGGCTGCTCTT 61.447 61.111 20.66 0.86 46.63 2.85
3314 5414 2.998279 GCATTGCGGGCTGCTCTTT 61.998 57.895 20.66 0.00 46.63 2.52
3315 5415 1.138247 CATTGCGGGCTGCTCTTTC 59.862 57.895 20.66 0.00 46.63 2.62
3316 5416 1.001641 ATTGCGGGCTGCTCTTTCT 60.002 52.632 20.66 0.00 46.63 2.52
3317 5417 1.028868 ATTGCGGGCTGCTCTTTCTC 61.029 55.000 20.66 0.00 46.63 2.87
3318 5418 2.821810 GCGGGCTGCTCTTTCTCC 60.822 66.667 11.99 0.00 41.73 3.71
3319 5419 2.665000 CGGGCTGCTCTTTCTCCA 59.335 61.111 0.00 0.00 0.00 3.86
3320 5420 1.449246 CGGGCTGCTCTTTCTCCAG 60.449 63.158 0.00 0.00 0.00 3.86
3321 5421 1.077858 GGGCTGCTCTTTCTCCAGG 60.078 63.158 0.00 0.00 0.00 4.45
3322 5422 1.557269 GGGCTGCTCTTTCTCCAGGA 61.557 60.000 0.00 0.00 0.00 3.86
3323 5423 0.107752 GGCTGCTCTTTCTCCAGGAG 60.108 60.000 10.70 10.70 0.00 3.69
3325 5425 4.511636 GCTCTTTCTCCAGGAGCG 57.488 61.111 12.26 2.87 42.03 5.03
3326 5426 1.153469 GCTCTTTCTCCAGGAGCGG 60.153 63.158 12.26 4.36 42.03 5.52
3327 5427 1.519719 CTCTTTCTCCAGGAGCGGG 59.480 63.158 12.26 4.00 0.00 6.13
3328 5428 2.124942 CTTTCTCCAGGAGCGGGC 60.125 66.667 12.26 0.00 0.00 6.13
3329 5429 2.607750 TTTCTCCAGGAGCGGGCT 60.608 61.111 12.26 0.00 0.00 5.19
3330 5430 2.190488 CTTTCTCCAGGAGCGGGCTT 62.190 60.000 12.26 0.00 0.00 4.35
3331 5431 2.185310 TTTCTCCAGGAGCGGGCTTC 62.185 60.000 12.26 0.00 0.00 3.86
3332 5432 3.080121 CTCCAGGAGCGGGCTTCT 61.080 66.667 2.60 0.00 30.55 2.85
3333 5433 2.607750 TCCAGGAGCGGGCTTCTT 60.608 61.111 0.00 0.00 27.14 2.52
3334 5434 2.437359 CCAGGAGCGGGCTTCTTG 60.437 66.667 0.00 0.00 27.14 3.02
3335 5435 2.665000 CAGGAGCGGGCTTCTTGA 59.335 61.111 0.00 0.00 27.14 3.02
3336 5436 1.003355 CAGGAGCGGGCTTCTTGAA 60.003 57.895 0.00 0.00 27.14 2.69
3337 5437 1.023513 CAGGAGCGGGCTTCTTGAAG 61.024 60.000 0.00 6.04 27.14 3.02
3338 5438 2.402572 GGAGCGGGCTTCTTGAAGC 61.403 63.158 22.79 22.79 44.76 3.86
3339 5439 1.376553 GAGCGGGCTTCTTGAAGCT 60.377 57.895 27.48 13.21 44.86 3.74
3340 5440 1.642952 GAGCGGGCTTCTTGAAGCTG 61.643 60.000 27.48 21.97 44.86 4.24
3341 5441 2.694760 GCGGGCTTCTTGAAGCTGG 61.695 63.158 27.48 21.29 44.86 4.85
3342 5442 2.042831 CGGGCTTCTTGAAGCTGGG 61.043 63.158 27.48 16.48 44.86 4.45
3343 5443 1.075659 GGGCTTCTTGAAGCTGGGT 59.924 57.895 27.48 0.00 44.86 4.51
3344 5444 0.962855 GGGCTTCTTGAAGCTGGGTC 60.963 60.000 27.48 14.74 44.86 4.46
3345 5445 1.301677 GGCTTCTTGAAGCTGGGTCG 61.302 60.000 27.48 0.00 44.86 4.79
3346 5446 0.603975 GCTTCTTGAAGCTGGGTCGT 60.604 55.000 23.36 0.00 42.32 4.34
3347 5447 1.884235 CTTCTTGAAGCTGGGTCGTT 58.116 50.000 0.00 0.00 0.00 3.85
3348 5448 1.801178 CTTCTTGAAGCTGGGTCGTTC 59.199 52.381 0.00 0.00 0.00 3.95
3349 5449 0.319555 TCTTGAAGCTGGGTCGTTCG 60.320 55.000 0.00 0.00 0.00 3.95
3350 5450 1.291877 CTTGAAGCTGGGTCGTTCGG 61.292 60.000 0.00 0.00 0.00 4.30
3351 5451 3.119096 GAAGCTGGGTCGTTCGGC 61.119 66.667 0.00 0.00 36.81 5.54
3353 5453 3.883744 AAGCTGGGTCGTTCGGCTG 62.884 63.158 8.85 0.00 45.16 4.85
3357 5457 4.699522 GGGTCGTTCGGCTGGCTT 62.700 66.667 0.00 0.00 0.00 4.35
3358 5458 3.119096 GGTCGTTCGGCTGGCTTC 61.119 66.667 0.00 0.00 0.00 3.86
3359 5459 2.048127 GTCGTTCGGCTGGCTTCT 60.048 61.111 0.00 0.00 0.00 2.85
3360 5460 2.048222 TCGTTCGGCTGGCTTCTG 60.048 61.111 0.00 0.00 0.00 3.02
3361 5461 3.793144 CGTTCGGCTGGCTTCTGC 61.793 66.667 0.00 0.00 38.76 4.26
3362 5462 2.359230 GTTCGGCTGGCTTCTGCT 60.359 61.111 0.00 0.00 39.59 4.24
3363 5463 2.359107 TTCGGCTGGCTTCTGCTG 60.359 61.111 0.00 0.00 41.33 4.41
3364 5464 3.907260 TTCGGCTGGCTTCTGCTGG 62.907 63.158 0.00 0.00 40.65 4.85
3366 5466 4.737177 GGCTGGCTTCTGCTGGCT 62.737 66.667 0.00 0.00 39.59 4.75
3367 5467 2.270205 GCTGGCTTCTGCTGGCTA 59.730 61.111 0.00 0.00 39.59 3.93
3368 5468 1.153005 GCTGGCTTCTGCTGGCTAT 60.153 57.895 0.00 0.00 39.59 2.97
3369 5469 0.750911 GCTGGCTTCTGCTGGCTATT 60.751 55.000 0.00 0.00 39.59 1.73
3370 5470 1.760192 CTGGCTTCTGCTGGCTATTT 58.240 50.000 0.00 0.00 39.59 1.40
3371 5471 1.674962 CTGGCTTCTGCTGGCTATTTC 59.325 52.381 0.00 0.00 39.59 2.17
3372 5472 1.028130 GGCTTCTGCTGGCTATTTCC 58.972 55.000 0.00 0.00 39.59 3.13
3373 5473 1.683011 GGCTTCTGCTGGCTATTTCCA 60.683 52.381 0.00 0.00 39.59 3.53
3392 5492 3.319137 CAGAAGTTGGATCGTGGAGAA 57.681 47.619 0.00 0.00 0.00 2.87
3393 5493 3.257393 CAGAAGTTGGATCGTGGAGAAG 58.743 50.000 0.00 0.00 0.00 2.85
3394 5494 3.056536 CAGAAGTTGGATCGTGGAGAAGA 60.057 47.826 0.00 0.00 0.00 2.87
3395 5495 3.056465 AGAAGTTGGATCGTGGAGAAGAC 60.056 47.826 0.00 0.00 0.00 3.01
3396 5496 1.550976 AGTTGGATCGTGGAGAAGACC 59.449 52.381 0.00 0.00 0.00 3.85
3397 5497 1.275291 GTTGGATCGTGGAGAAGACCA 59.725 52.381 0.00 0.00 37.63 4.02
3398 5498 1.186200 TGGATCGTGGAGAAGACCAG 58.814 55.000 0.00 0.00 40.85 4.00
3399 5499 1.272480 TGGATCGTGGAGAAGACCAGA 60.272 52.381 0.00 0.00 40.85 3.86
3400 5500 1.825474 GGATCGTGGAGAAGACCAGAA 59.175 52.381 0.00 0.00 40.85 3.02
3401 5501 2.417515 GGATCGTGGAGAAGACCAGAAC 60.418 54.545 0.00 0.00 40.85 3.01
3402 5502 0.596577 TCGTGGAGAAGACCAGAACG 59.403 55.000 0.00 0.00 40.85 3.95
3403 5503 0.388649 CGTGGAGAAGACCAGAACGG 60.389 60.000 0.00 0.00 40.85 4.44
3404 5504 0.037232 GTGGAGAAGACCAGAACGGG 60.037 60.000 0.00 0.00 40.85 5.28
3405 5505 1.192146 TGGAGAAGACCAGAACGGGG 61.192 60.000 0.00 0.00 40.22 5.73
3406 5506 1.079057 GAGAAGACCAGAACGGGGC 60.079 63.158 0.00 0.00 40.22 5.80
3407 5507 2.046217 GAAGACCAGAACGGGGCC 60.046 66.667 0.00 0.00 36.18 5.80
3464 5564 4.597940 GGGCCCAGGACTATTAGTCTATTT 59.402 45.833 19.95 4.85 44.46 1.40
3684 5784 1.694844 TGCGGCATGGATTGATCATT 58.305 45.000 0.00 0.00 0.00 2.57
3773 5876 1.340889 GAACTTCAAATGTGCCCTGCA 59.659 47.619 0.00 0.00 35.60 4.41
4057 6180 7.017551 TGTTTCGGAGGGTATAGATAGGTAGTA 59.982 40.741 0.00 0.00 0.00 1.82
4100 7043 6.936900 ATGGTGCAACTGATGGACTATTATAC 59.063 38.462 2.04 0.00 46.87 1.47
4371 7318 1.142060 TCCACAAGGTTTCATCCACGT 59.858 47.619 0.00 0.00 35.89 4.49
4542 7492 3.454371 AAAACTAGTGTCTCAGTGCGT 57.546 42.857 0.00 0.00 0.00 5.24
4543 7493 2.423926 AACTAGTGTCTCAGTGCGTG 57.576 50.000 0.00 0.00 0.00 5.34
4555 7505 5.232414 GTCTCAGTGCGTGATATTTTAGGTC 59.768 44.000 0.00 0.00 33.51 3.85
4564 7514 6.157211 CGTGATATTTTAGGTCGAAGGCTAT 58.843 40.000 0.00 0.00 0.00 2.97
4773 7726 6.042781 AGTGGGCTAATATTTCTTGATCCGTA 59.957 38.462 0.00 0.00 0.00 4.02
5579 8747 2.236395 GCCAGGTCTCTGCCTAACTTTA 59.764 50.000 0.00 0.00 39.61 1.85
5732 8903 5.281803 GTCCTAAGACGCAGCAGAAGCTA 62.282 52.174 0.00 0.00 40.61 3.32
5922 9093 2.309755 TCCCAGAACCTTGCAGATCAAT 59.690 45.455 0.00 0.00 33.57 2.57
6308 9479 2.595386 GGTAAAAAGGATGCAGCAACG 58.405 47.619 3.51 0.00 0.00 4.10
6623 9794 2.362120 GCACAGGAGCAGGGCATT 60.362 61.111 0.00 0.00 0.00 3.56
6713 9884 5.447818 GCTTGAACGGATGAATAGGTTTCTG 60.448 44.000 0.00 0.00 0.00 3.02
6836 10007 2.111384 GAGGAATCACTGCCTCCTACA 58.889 52.381 0.00 0.00 43.91 2.74
6842 10013 3.037851 TCACTGCCTCCTACATCATCT 57.962 47.619 0.00 0.00 0.00 2.90
6854 10025 5.774184 TCCTACATCATCTCATCTTCCTGAG 59.226 44.000 0.00 0.00 43.33 3.35
6879 10050 6.465948 AGATGAGGTGAATGATCATTAGCTC 58.534 40.000 27.96 27.96 38.01 4.09
6881 10052 4.202398 TGAGGTGAATGATCATTAGCTCCC 60.202 45.833 29.45 21.56 38.01 4.30
7209 10391 6.707273 TCCTAGGGTGGTAATTTTACTTGT 57.293 37.500 9.46 0.00 34.16 3.16
7323 10512 5.235616 TGGATTGTTCTTGACGTGTAACTTC 59.764 40.000 0.00 0.00 35.37 3.01
7339 10529 6.016276 GTGTAACTTCAAGAAATCCATGTGGT 60.016 38.462 0.00 0.00 36.34 4.16
7358 10552 4.009675 TGGTGGTGTTCTGATTAATCTGC 58.990 43.478 16.24 5.27 0.00 4.26
7676 10914 1.373812 GTGCCTCCCACGTACCTTT 59.626 57.895 0.00 0.00 34.22 3.11
7778 11020 1.417979 GCGAAGAAAGTGAGCGAGC 59.582 57.895 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.192146 TGTAGAGTGTGGCACCTCCC 61.192 60.000 23.69 17.71 34.49 4.30
72 73 0.669318 GTACAGTGCAACGCCTAGCA 60.669 55.000 0.00 0.00 45.86 3.49
116 118 6.417327 CAAAATTTCGCTAAATGTTTGTGCA 58.583 32.000 15.33 0.00 35.46 4.57
126 128 1.971357 TGGGCCCAAAATTTCGCTAAA 59.029 42.857 26.33 0.00 0.00 1.85
140 142 2.223464 TAGGCATCCAGTTTGGGCCC 62.223 60.000 17.59 17.59 43.33 5.80
150 152 1.340017 GCAACAGAAGGTAGGCATCCA 60.340 52.381 1.22 0.00 32.05 3.41
154 156 1.276421 GAGAGCAACAGAAGGTAGGCA 59.724 52.381 0.00 0.00 33.64 4.75
207 209 3.075005 TAGAGTGTGGCGCCTCCC 61.075 66.667 29.70 16.23 0.00 4.30
241 243 0.669318 GTACAGTGCAACGCCTAGCA 60.669 55.000 0.00 0.00 45.86 3.49
259 261 3.706373 CTAGGGGCGCCACACTGT 61.706 66.667 34.08 13.34 0.00 3.55
274 276 2.439507 CTCCCAAATCTTGCCTAGCCTA 59.560 50.000 0.00 0.00 0.00 3.93
275 277 1.213926 CTCCCAAATCTTGCCTAGCCT 59.786 52.381 0.00 0.00 0.00 4.58
277 279 2.570135 CTCTCCCAAATCTTGCCTAGC 58.430 52.381 0.00 0.00 0.00 3.42
298 2357 2.433970 CACTCTCTCCCCCTCTCAAATC 59.566 54.545 0.00 0.00 0.00 2.17
441 2502 1.002659 ACTAGGCGCCACACATGTAAA 59.997 47.619 31.54 0.00 0.00 2.01
535 2596 4.742201 ACCCTACTGTGCAGCGCG 62.742 66.667 0.00 0.00 0.00 6.86
569 2630 0.594602 GACCCTTTTGTGTAACGCCC 59.405 55.000 0.00 0.00 42.39 6.13
574 2635 2.107552 CTCCCCTGACCCTTTTGTGTAA 59.892 50.000 0.00 0.00 0.00 2.41
1197 3282 2.357034 TCGCTCGTGTTGGGCTTC 60.357 61.111 0.00 0.00 0.00 3.86
1760 3845 6.183309 ACAAAGTGATTAGCGAGAAATTCC 57.817 37.500 0.00 0.00 0.00 3.01
1814 3899 6.267471 TCCAACCTCAGCAATTTTTGATAAGT 59.733 34.615 0.00 0.00 0.00 2.24
1897 3985 8.691797 ACTTATTCAACACCACTAAACAATGTT 58.308 29.630 0.00 0.00 33.86 2.71
1903 3991 6.204882 AGCAGACTTATTCAACACCACTAAAC 59.795 38.462 0.00 0.00 0.00 2.01
1963 4051 0.918983 TTTCCTAGGCTCACCCATGG 59.081 55.000 4.14 4.14 36.11 3.66
2050 4139 4.477780 GTGACTAGTCTCTCAAACTTCCG 58.522 47.826 23.01 0.00 0.00 4.30
2070 4162 2.515996 ATCCTGCGGTTACACGGGTG 62.516 60.000 0.00 0.00 0.00 4.61
2093 4185 5.872070 AGTCACAGCTATCTTTTACTCTTGC 59.128 40.000 0.00 0.00 0.00 4.01
2139 4231 2.363306 AGCAATGGTGGTGAACAGAA 57.637 45.000 0.00 0.00 33.11 3.02
2140 4232 3.719268 ATAGCAATGGTGGTGAACAGA 57.281 42.857 0.00 0.00 36.66 3.41
2141 4233 4.789012 AAATAGCAATGGTGGTGAACAG 57.211 40.909 0.00 0.00 36.66 3.16
2142 4234 6.435591 TGATTAAATAGCAATGGTGGTGAACA 59.564 34.615 0.00 0.00 36.66 3.18
2143 4235 6.751888 GTGATTAAATAGCAATGGTGGTGAAC 59.248 38.462 0.00 0.00 36.66 3.18
2152 4244 7.309377 CCCAGGTATGGTGATTAAATAGCAATG 60.309 40.741 0.00 0.00 46.10 2.82
2173 4265 0.620556 AATGCTAGTGTGACCCCAGG 59.379 55.000 0.00 0.00 0.00 4.45
2176 4268 0.035056 AGCAATGCTAGTGTGACCCC 60.035 55.000 5.69 0.00 36.99 4.95
2177 4269 1.339055 TGAGCAATGCTAGTGTGACCC 60.339 52.381 8.12 0.00 39.88 4.46
2242 4334 1.067283 TGCACCCAAAAACACACACAG 60.067 47.619 0.00 0.00 0.00 3.66
2298 4390 7.093068 ACCACCAACAACTGACATATAGATACA 60.093 37.037 0.00 0.00 0.00 2.29
2316 4408 1.021968 GTGAACAGACCACCACCAAC 58.978 55.000 0.00 0.00 0.00 3.77
2361 4453 4.951715 TCAGCCATTTGCAACAGATCTAAT 59.048 37.500 0.00 0.00 44.83 1.73
2381 4473 1.404717 CGAACAGGACCACCATCTCAG 60.405 57.143 0.00 0.00 38.94 3.35
2395 4487 2.869801 TCACAACTTTGGTAGCGAACAG 59.130 45.455 0.00 0.00 0.00 3.16
2427 4519 5.745227 AGTTACATATAAGTGGCACTTGCT 58.255 37.500 36.40 26.28 39.11 3.91
2846 4944 8.894768 AACTGATGATGCTAAACTTATCCTAC 57.105 34.615 0.00 0.00 0.00 3.18
2866 4964 2.426738 CAGGTTGAGCCACAAAAACTGA 59.573 45.455 12.18 0.00 40.36 3.41
2893 4991 8.421002 AGTTGCTATGGACAAAACAAATTAAGT 58.579 29.630 0.00 0.00 0.00 2.24
2978 5078 1.485066 GAAGATCAGAACGGGGCCTTA 59.515 52.381 0.84 0.00 0.00 2.69
2979 5079 0.253327 GAAGATCAGAACGGGGCCTT 59.747 55.000 0.84 0.00 0.00 4.35
2980 5080 0.618968 AGAAGATCAGAACGGGGCCT 60.619 55.000 0.84 0.00 0.00 5.19
2981 5081 0.179070 GAGAAGATCAGAACGGGGCC 60.179 60.000 0.00 0.00 0.00 5.80
2982 5082 0.179070 GGAGAAGATCAGAACGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
2983 5083 0.103208 CGGAGAAGATCAGAACGGGG 59.897 60.000 0.00 0.00 0.00 5.73
2984 5084 0.103208 CCGGAGAAGATCAGAACGGG 59.897 60.000 0.00 0.00 36.45 5.28
2985 5085 0.528684 GCCGGAGAAGATCAGAACGG 60.529 60.000 5.05 10.31 42.47 4.44
2986 5086 0.457851 AGCCGGAGAAGATCAGAACG 59.542 55.000 5.05 0.00 0.00 3.95
2987 5087 2.093973 TGAAGCCGGAGAAGATCAGAAC 60.094 50.000 5.05 0.00 0.00 3.01
2988 5088 2.179427 TGAAGCCGGAGAAGATCAGAA 58.821 47.619 5.05 0.00 0.00 3.02
2989 5089 1.852633 TGAAGCCGGAGAAGATCAGA 58.147 50.000 5.05 0.00 0.00 3.27
2990 5090 2.871022 CAATGAAGCCGGAGAAGATCAG 59.129 50.000 5.05 0.00 0.00 2.90
2991 5091 2.501316 TCAATGAAGCCGGAGAAGATCA 59.499 45.455 5.05 0.00 0.00 2.92
2992 5092 3.185246 TCAATGAAGCCGGAGAAGATC 57.815 47.619 5.05 0.00 0.00 2.75
2993 5093 3.634397 TTCAATGAAGCCGGAGAAGAT 57.366 42.857 5.05 0.00 0.00 2.40
2994 5094 3.634397 ATTCAATGAAGCCGGAGAAGA 57.366 42.857 5.05 0.00 0.00 2.87
2995 5095 3.249559 GCTATTCAATGAAGCCGGAGAAG 59.750 47.826 5.05 0.00 0.00 2.85
2996 5096 3.206150 GCTATTCAATGAAGCCGGAGAA 58.794 45.455 5.05 0.00 0.00 2.87
2997 5097 2.485479 GGCTATTCAATGAAGCCGGAGA 60.485 50.000 5.05 0.00 45.82 3.71
2998 5098 1.876156 GGCTATTCAATGAAGCCGGAG 59.124 52.381 5.05 0.04 45.82 4.63
2999 5099 1.967319 GGCTATTCAATGAAGCCGGA 58.033 50.000 5.05 0.00 45.82 5.14
3003 5103 3.243334 GGAAGCTGGCTATTCAATGAAGC 60.243 47.826 1.10 0.00 35.47 3.86
3004 5104 3.317430 GGGAAGCTGGCTATTCAATGAAG 59.683 47.826 1.10 0.00 0.00 3.02
3005 5105 3.290710 GGGAAGCTGGCTATTCAATGAA 58.709 45.455 0.00 0.00 0.00 2.57
3006 5106 2.746142 CGGGAAGCTGGCTATTCAATGA 60.746 50.000 0.00 0.00 0.00 2.57
3007 5107 1.605710 CGGGAAGCTGGCTATTCAATG 59.394 52.381 0.00 0.00 0.00 2.82
3008 5108 1.490490 TCGGGAAGCTGGCTATTCAAT 59.510 47.619 0.00 0.00 0.00 2.57
3009 5109 0.908910 TCGGGAAGCTGGCTATTCAA 59.091 50.000 0.00 0.00 0.00 2.69
3010 5110 0.465705 CTCGGGAAGCTGGCTATTCA 59.534 55.000 0.00 0.00 0.00 2.57
3011 5111 0.753262 TCTCGGGAAGCTGGCTATTC 59.247 55.000 0.00 0.00 0.00 1.75
3012 5112 1.139853 CTTCTCGGGAAGCTGGCTATT 59.860 52.381 13.06 0.00 41.80 1.73
3013 5113 0.755686 CTTCTCGGGAAGCTGGCTAT 59.244 55.000 13.06 0.00 41.80 2.97
3014 5114 2.202866 CTTCTCGGGAAGCTGGCTA 58.797 57.895 13.06 0.00 41.80 3.93
3015 5115 2.985456 CTTCTCGGGAAGCTGGCT 59.015 61.111 13.06 0.00 41.80 4.75
3022 5122 3.077519 GCGGCTAGCTTCTCGGGAA 62.078 63.158 15.72 0.00 44.04 3.97
3023 5123 3.528370 GCGGCTAGCTTCTCGGGA 61.528 66.667 15.72 0.00 44.04 5.14
3051 5151 0.537188 AACACATCCTGCTCCCGTAG 59.463 55.000 0.00 0.00 0.00 3.51
3052 5152 0.535335 GAACACATCCTGCTCCCGTA 59.465 55.000 0.00 0.00 0.00 4.02
3053 5153 1.296715 GAACACATCCTGCTCCCGT 59.703 57.895 0.00 0.00 0.00 5.28
3054 5154 0.742281 CTGAACACATCCTGCTCCCG 60.742 60.000 0.00 0.00 0.00 5.14
3055 5155 1.028868 GCTGAACACATCCTGCTCCC 61.029 60.000 0.00 0.00 0.00 4.30
3056 5156 0.321919 TGCTGAACACATCCTGCTCC 60.322 55.000 0.00 0.00 0.00 4.70
3057 5157 1.085091 CTGCTGAACACATCCTGCTC 58.915 55.000 0.00 0.00 0.00 4.26
3058 5158 0.959372 GCTGCTGAACACATCCTGCT 60.959 55.000 0.00 0.00 0.00 4.24
3059 5159 0.959372 AGCTGCTGAACACATCCTGC 60.959 55.000 0.00 0.00 0.00 4.85
3060 5160 1.085091 GAGCTGCTGAACACATCCTG 58.915 55.000 7.01 0.00 0.00 3.86
3061 5161 0.982704 AGAGCTGCTGAACACATCCT 59.017 50.000 7.01 0.00 0.00 3.24
3062 5162 3.547567 AGAGCTGCTGAACACATCC 57.452 52.632 7.01 0.00 0.00 3.51
3076 5176 0.178533 AATCTGGAGCTGCTCAGAGC 59.821 55.000 28.95 16.21 42.82 4.09
3077 5177 2.695127 AAATCTGGAGCTGCTCAGAG 57.305 50.000 28.95 22.62 31.08 3.35
3078 5178 2.355513 GGAAAATCTGGAGCTGCTCAGA 60.356 50.000 28.95 26.03 31.08 3.27
3079 5179 2.015587 GGAAAATCTGGAGCTGCTCAG 58.984 52.381 28.95 22.45 31.08 3.35
3080 5180 1.340405 GGGAAAATCTGGAGCTGCTCA 60.340 52.381 28.95 15.11 31.08 4.26
3081 5181 1.340405 TGGGAAAATCTGGAGCTGCTC 60.340 52.381 21.17 21.17 0.00 4.26
3082 5182 0.700564 TGGGAAAATCTGGAGCTGCT 59.299 50.000 6.82 0.00 0.00 4.24
3083 5183 1.203287 GTTGGGAAAATCTGGAGCTGC 59.797 52.381 0.00 0.00 0.00 5.25
3084 5184 2.751806 GAGTTGGGAAAATCTGGAGCTG 59.248 50.000 0.00 0.00 0.00 4.24
3085 5185 2.646798 AGAGTTGGGAAAATCTGGAGCT 59.353 45.455 0.00 0.00 0.00 4.09
3086 5186 3.013219 GAGAGTTGGGAAAATCTGGAGC 58.987 50.000 0.00 0.00 0.00 4.70
3087 5187 3.615155 GGAGAGTTGGGAAAATCTGGAG 58.385 50.000 0.00 0.00 0.00 3.86
3088 5188 2.308866 GGGAGAGTTGGGAAAATCTGGA 59.691 50.000 0.00 0.00 0.00 3.86
3089 5189 2.310052 AGGGAGAGTTGGGAAAATCTGG 59.690 50.000 0.00 0.00 0.00 3.86
3090 5190 3.009473 TGAGGGAGAGTTGGGAAAATCTG 59.991 47.826 0.00 0.00 0.00 2.90
3091 5191 3.260205 TGAGGGAGAGTTGGGAAAATCT 58.740 45.455 0.00 0.00 0.00 2.40
3092 5192 3.615155 CTGAGGGAGAGTTGGGAAAATC 58.385 50.000 0.00 0.00 0.00 2.17
3093 5193 2.291217 GCTGAGGGAGAGTTGGGAAAAT 60.291 50.000 0.00 0.00 0.00 1.82
3094 5194 1.073923 GCTGAGGGAGAGTTGGGAAAA 59.926 52.381 0.00 0.00 0.00 2.29
3095 5195 0.693049 GCTGAGGGAGAGTTGGGAAA 59.307 55.000 0.00 0.00 0.00 3.13
3096 5196 0.473694 TGCTGAGGGAGAGTTGGGAA 60.474 55.000 0.00 0.00 0.00 3.97
3097 5197 0.252881 ATGCTGAGGGAGAGTTGGGA 60.253 55.000 0.00 0.00 0.00 4.37
3098 5198 0.107312 CATGCTGAGGGAGAGTTGGG 60.107 60.000 0.00 0.00 0.00 4.12
3099 5199 0.107312 CCATGCTGAGGGAGAGTTGG 60.107 60.000 0.00 0.00 0.00 3.77
3100 5200 3.473147 CCATGCTGAGGGAGAGTTG 57.527 57.895 0.00 0.00 0.00 3.16
3108 5208 4.435970 TGCTGGCCCATGCTGAGG 62.436 66.667 0.00 0.00 37.74 3.86
3109 5209 2.829003 CTGCTGGCCCATGCTGAG 60.829 66.667 0.00 0.00 37.74 3.35
3128 5228 1.078848 CCTCAAGCTCCCTTCGTGG 60.079 63.158 0.00 0.00 0.00 4.94
3129 5229 1.743252 GCCTCAAGCTCCCTTCGTG 60.743 63.158 0.00 0.00 38.99 4.35
3130 5230 2.665603 GCCTCAAGCTCCCTTCGT 59.334 61.111 0.00 0.00 38.99 3.85
3131 5231 2.124942 GGCCTCAAGCTCCCTTCG 60.125 66.667 0.00 0.00 43.05 3.79
3132 5232 2.273776 GGGCCTCAAGCTCCCTTC 59.726 66.667 0.84 0.00 43.05 3.46
3133 5233 2.532715 TGGGCCTCAAGCTCCCTT 60.533 61.111 4.53 0.00 43.71 3.95
3134 5234 3.013932 CTGGGCCTCAAGCTCCCT 61.014 66.667 4.53 0.00 43.71 4.20
3135 5235 2.432174 AAACTGGGCCTCAAGCTCCC 62.432 60.000 4.53 0.29 43.71 4.30
3136 5236 1.075659 AAACTGGGCCTCAAGCTCC 59.924 57.895 4.53 0.00 43.71 4.70
3137 5237 0.250901 TCAAACTGGGCCTCAAGCTC 60.251 55.000 4.53 0.00 45.08 4.09
3138 5238 0.407139 ATCAAACTGGGCCTCAAGCT 59.593 50.000 4.53 0.00 43.05 3.74
3139 5239 0.529378 CATCAAACTGGGCCTCAAGC 59.471 55.000 4.53 0.00 42.60 4.01
3140 5240 1.180029 CCATCAAACTGGGCCTCAAG 58.820 55.000 4.53 0.23 32.28 3.02
3141 5241 0.899717 GCCATCAAACTGGGCCTCAA 60.900 55.000 4.53 0.00 41.90 3.02
3142 5242 1.304381 GCCATCAAACTGGGCCTCA 60.304 57.895 4.53 0.00 41.90 3.86
3143 5243 3.608432 GCCATCAAACTGGGCCTC 58.392 61.111 4.53 0.00 41.90 4.70
3147 5247 1.737793 GTTACGAGCCATCAAACTGGG 59.262 52.381 0.00 0.00 36.75 4.45
3148 5248 1.393539 CGTTACGAGCCATCAAACTGG 59.606 52.381 0.00 0.00 39.45 4.00
3149 5249 2.333926 TCGTTACGAGCCATCAAACTG 58.666 47.619 2.33 0.00 0.00 3.16
3150 5250 2.607187 CTCGTTACGAGCCATCAAACT 58.393 47.619 21.80 0.00 46.75 2.66
3161 5261 3.996150 ACAGTTTTCCTCTCGTTACGA 57.004 42.857 7.39 7.39 0.00 3.43
3162 5262 3.119136 CGAACAGTTTTCCTCTCGTTACG 59.881 47.826 0.00 0.00 0.00 3.18
3163 5263 4.293415 TCGAACAGTTTTCCTCTCGTTAC 58.707 43.478 0.00 0.00 30.84 2.50
3164 5264 4.572985 TCGAACAGTTTTCCTCTCGTTA 57.427 40.909 0.00 0.00 30.84 3.18
3165 5265 3.447918 TCGAACAGTTTTCCTCTCGTT 57.552 42.857 0.00 0.00 30.84 3.85
3166 5266 3.005472 TGATCGAACAGTTTTCCTCTCGT 59.995 43.478 0.00 0.00 30.84 4.18
3167 5267 3.575630 TGATCGAACAGTTTTCCTCTCG 58.424 45.455 0.00 0.00 0.00 4.04
3168 5268 4.810790 TCTGATCGAACAGTTTTCCTCTC 58.189 43.478 20.52 0.00 38.79 3.20
3169 5269 4.524714 TCTCTGATCGAACAGTTTTCCTCT 59.475 41.667 20.52 0.00 38.79 3.69
3170 5270 4.810790 TCTCTGATCGAACAGTTTTCCTC 58.189 43.478 20.52 0.00 38.79 3.71
3171 5271 4.873746 TCTCTGATCGAACAGTTTTCCT 57.126 40.909 20.52 0.00 38.79 3.36
3172 5272 5.924475 TTTCTCTGATCGAACAGTTTTCC 57.076 39.130 20.52 0.00 38.79 3.13
3173 5273 6.354622 CGTTTTTCTCTGATCGAACAGTTTTC 59.645 38.462 20.52 0.00 38.79 2.29
3174 5274 6.192360 CGTTTTTCTCTGATCGAACAGTTTT 58.808 36.000 20.52 0.00 38.79 2.43
3175 5275 5.277345 CCGTTTTTCTCTGATCGAACAGTTT 60.277 40.000 20.52 0.00 38.79 2.66
3176 5276 4.211374 CCGTTTTTCTCTGATCGAACAGTT 59.789 41.667 20.52 0.00 38.79 3.16
3177 5277 3.741344 CCGTTTTTCTCTGATCGAACAGT 59.259 43.478 20.52 0.00 38.79 3.55
3178 5278 3.741344 ACCGTTTTTCTCTGATCGAACAG 59.259 43.478 16.00 16.00 39.02 3.16
3179 5279 3.724374 ACCGTTTTTCTCTGATCGAACA 58.276 40.909 0.00 0.00 0.00 3.18
3180 5280 4.727235 AACCGTTTTTCTCTGATCGAAC 57.273 40.909 0.00 0.00 0.00 3.95
3181 5281 4.812091 TCAAACCGTTTTTCTCTGATCGAA 59.188 37.500 0.00 0.00 0.00 3.71
3182 5282 4.373527 TCAAACCGTTTTTCTCTGATCGA 58.626 39.130 0.00 0.00 0.00 3.59
3183 5283 4.377431 CCTCAAACCGTTTTTCTCTGATCG 60.377 45.833 0.00 0.00 0.00 3.69
3184 5284 4.755123 TCCTCAAACCGTTTTTCTCTGATC 59.245 41.667 0.00 0.00 0.00 2.92
3185 5285 4.714632 TCCTCAAACCGTTTTTCTCTGAT 58.285 39.130 0.00 0.00 0.00 2.90
3186 5286 4.145365 TCCTCAAACCGTTTTTCTCTGA 57.855 40.909 0.00 0.00 0.00 3.27
3187 5287 5.008613 TGAATCCTCAAACCGTTTTTCTCTG 59.991 40.000 0.00 0.00 0.00 3.35
3188 5288 5.008712 GTGAATCCTCAAACCGTTTTTCTCT 59.991 40.000 0.00 0.00 31.88 3.10
3189 5289 5.008712 AGTGAATCCTCAAACCGTTTTTCTC 59.991 40.000 0.00 0.00 31.88 2.87
3190 5290 4.887655 AGTGAATCCTCAAACCGTTTTTCT 59.112 37.500 0.00 0.00 31.88 2.52
3191 5291 5.183014 AGTGAATCCTCAAACCGTTTTTC 57.817 39.130 0.00 0.00 31.88 2.29
3192 5292 5.588240 GAAGTGAATCCTCAAACCGTTTTT 58.412 37.500 0.00 0.00 31.88 1.94
3193 5293 4.261031 CGAAGTGAATCCTCAAACCGTTTT 60.261 41.667 0.00 0.00 31.88 2.43
3194 5294 3.250040 CGAAGTGAATCCTCAAACCGTTT 59.750 43.478 0.00 0.00 31.88 3.60
3195 5295 2.806244 CGAAGTGAATCCTCAAACCGTT 59.194 45.455 0.00 0.00 31.88 4.44
3196 5296 2.413837 CGAAGTGAATCCTCAAACCGT 58.586 47.619 0.00 0.00 31.88 4.83
3197 5297 1.732259 CCGAAGTGAATCCTCAAACCG 59.268 52.381 0.00 0.00 31.88 4.44
3198 5298 2.084546 CCCGAAGTGAATCCTCAAACC 58.915 52.381 0.00 0.00 31.88 3.27
3199 5299 3.003480 CTCCCGAAGTGAATCCTCAAAC 58.997 50.000 0.00 0.00 31.88 2.93
3200 5300 2.027192 CCTCCCGAAGTGAATCCTCAAA 60.027 50.000 0.00 0.00 31.88 2.69
3201 5301 1.555075 CCTCCCGAAGTGAATCCTCAA 59.445 52.381 0.00 0.00 31.88 3.02
3202 5302 1.195115 CCTCCCGAAGTGAATCCTCA 58.805 55.000 0.00 0.00 0.00 3.86
3203 5303 0.466124 CCCTCCCGAAGTGAATCCTC 59.534 60.000 0.00 0.00 0.00 3.71
3204 5304 1.627297 GCCCTCCCGAAGTGAATCCT 61.627 60.000 0.00 0.00 0.00 3.24
3205 5305 1.153147 GCCCTCCCGAAGTGAATCC 60.153 63.158 0.00 0.00 0.00 3.01
3206 5306 0.181350 ATGCCCTCCCGAAGTGAATC 59.819 55.000 0.00 0.00 0.00 2.52
3207 5307 0.625849 AATGCCCTCCCGAAGTGAAT 59.374 50.000 0.00 0.00 0.00 2.57
3208 5308 0.035439 GAATGCCCTCCCGAAGTGAA 60.035 55.000 0.00 0.00 0.00 3.18
3209 5309 1.602237 GAATGCCCTCCCGAAGTGA 59.398 57.895 0.00 0.00 0.00 3.41
3210 5310 1.452108 GGAATGCCCTCCCGAAGTG 60.452 63.158 0.00 0.00 0.00 3.16
3211 5311 0.326238 TAGGAATGCCCTCCCGAAGT 60.326 55.000 0.00 0.00 43.31 3.01
3212 5312 1.059913 ATAGGAATGCCCTCCCGAAG 58.940 55.000 0.00 0.00 43.31 3.79
3213 5313 0.764890 CATAGGAATGCCCTCCCGAA 59.235 55.000 0.00 0.00 43.31 4.30
3214 5314 0.399949 ACATAGGAATGCCCTCCCGA 60.400 55.000 0.00 0.00 43.31 5.14
3215 5315 1.348064 TACATAGGAATGCCCTCCCG 58.652 55.000 0.00 0.00 43.31 5.14
3216 5316 4.388577 AATTACATAGGAATGCCCTCCC 57.611 45.455 0.00 0.00 43.31 4.30
3217 5317 6.779860 TCTAAATTACATAGGAATGCCCTCC 58.220 40.000 0.00 0.00 43.31 4.30
3218 5318 6.372937 GCTCTAAATTACATAGGAATGCCCTC 59.627 42.308 0.00 0.00 43.31 4.30
3220 5320 6.003950 TGCTCTAAATTACATAGGAATGCCC 58.996 40.000 0.00 0.00 36.50 5.36
3221 5321 7.229506 AGTTGCTCTAAATTACATAGGAATGCC 59.770 37.037 0.00 0.00 36.50 4.40
3222 5322 8.159344 AGTTGCTCTAAATTACATAGGAATGC 57.841 34.615 0.00 0.00 36.50 3.56
3224 5324 9.343539 GGAAGTTGCTCTAAATTACATAGGAAT 57.656 33.333 0.00 0.00 27.78 3.01
3225 5325 8.325787 TGGAAGTTGCTCTAAATTACATAGGAA 58.674 33.333 0.00 0.00 32.58 3.36
3226 5326 7.769044 GTGGAAGTTGCTCTAAATTACATAGGA 59.231 37.037 0.00 0.00 39.19 2.94
3227 5327 7.770897 AGTGGAAGTTGCTCTAAATTACATAGG 59.229 37.037 0.00 0.00 39.19 2.57
3228 5328 8.723942 AGTGGAAGTTGCTCTAAATTACATAG 57.276 34.615 0.00 0.00 39.19 2.23
3229 5329 9.162764 GAAGTGGAAGTTGCTCTAAATTACATA 57.837 33.333 0.00 0.00 39.19 2.29
3230 5330 7.885399 AGAAGTGGAAGTTGCTCTAAATTACAT 59.115 33.333 0.00 0.00 39.19 2.29
3231 5331 7.173218 CAGAAGTGGAAGTTGCTCTAAATTACA 59.827 37.037 0.00 0.00 34.99 2.41
3232 5332 7.522374 CAGAAGTGGAAGTTGCTCTAAATTAC 58.478 38.462 0.00 0.00 0.00 1.89
3233 5333 7.672983 CAGAAGTGGAAGTTGCTCTAAATTA 57.327 36.000 0.00 0.00 0.00 1.40
3234 5334 6.566197 CAGAAGTGGAAGTTGCTCTAAATT 57.434 37.500 0.00 0.00 0.00 1.82
3250 5350 6.307155 CGTAGCTTCATAAAAACCAGAAGTG 58.693 40.000 0.00 0.00 39.62 3.16
3251 5351 6.481954 CGTAGCTTCATAAAAACCAGAAGT 57.518 37.500 0.00 0.00 39.62 3.01
3275 5375 3.240069 CAAATTTCTGAAGCAGCGGAAG 58.760 45.455 0.00 0.00 34.84 3.46
3276 5376 2.607771 GCAAATTTCTGAAGCAGCGGAA 60.608 45.455 0.00 0.00 0.00 4.30
3277 5377 1.068333 GCAAATTTCTGAAGCAGCGGA 60.068 47.619 0.00 0.00 0.00 5.54
3278 5378 1.336148 TGCAAATTTCTGAAGCAGCGG 60.336 47.619 0.00 0.00 0.00 5.52
3279 5379 2.054687 TGCAAATTTCTGAAGCAGCG 57.945 45.000 0.00 0.00 0.00 5.18
3280 5380 3.424433 GCAATGCAAATTTCTGAAGCAGC 60.424 43.478 0.00 3.89 38.75 5.25
3281 5381 3.181534 CGCAATGCAAATTTCTGAAGCAG 60.182 43.478 5.91 0.00 38.75 4.24
3282 5382 2.732500 CGCAATGCAAATTTCTGAAGCA 59.267 40.909 5.91 4.79 39.79 3.91
3283 5383 2.093152 CCGCAATGCAAATTTCTGAAGC 59.907 45.455 5.91 0.00 0.00 3.86
3284 5384 2.669434 CCCGCAATGCAAATTTCTGAAG 59.331 45.455 5.91 0.00 0.00 3.02
3285 5385 2.686235 CCCGCAATGCAAATTTCTGAA 58.314 42.857 5.91 0.00 0.00 3.02
3286 5386 1.672441 GCCCGCAATGCAAATTTCTGA 60.672 47.619 5.91 0.00 0.00 3.27
3287 5387 0.722848 GCCCGCAATGCAAATTTCTG 59.277 50.000 5.91 0.00 0.00 3.02
3288 5388 0.609662 AGCCCGCAATGCAAATTTCT 59.390 45.000 5.91 0.00 0.00 2.52
3289 5389 0.722848 CAGCCCGCAATGCAAATTTC 59.277 50.000 5.91 0.00 0.00 2.17
3290 5390 1.300266 GCAGCCCGCAATGCAAATTT 61.300 50.000 5.91 0.00 42.11 1.82
3291 5391 1.742510 GCAGCCCGCAATGCAAATT 60.743 52.632 5.91 0.00 42.11 1.82
3292 5392 2.125431 GCAGCCCGCAATGCAAAT 60.125 55.556 5.91 0.00 42.11 2.32
3293 5393 3.285523 GAGCAGCCCGCAATGCAAA 62.286 57.895 5.91 0.00 45.01 3.68
3294 5394 3.751246 GAGCAGCCCGCAATGCAA 61.751 61.111 5.91 0.00 45.01 4.08
3295 5395 4.728110 AGAGCAGCCCGCAATGCA 62.728 61.111 5.91 0.00 45.01 3.96
3296 5396 2.879039 GAAAGAGCAGCCCGCAATGC 62.879 60.000 0.00 0.00 46.13 3.56
3297 5397 1.138247 GAAAGAGCAGCCCGCAATG 59.862 57.895 0.00 0.00 46.13 2.82
3298 5398 1.001641 AGAAAGAGCAGCCCGCAAT 60.002 52.632 0.00 0.00 46.13 3.56
3299 5399 1.672356 GAGAAAGAGCAGCCCGCAA 60.672 57.895 0.00 0.00 46.13 4.85
3300 5400 2.046892 GAGAAAGAGCAGCCCGCA 60.047 61.111 0.00 0.00 46.13 5.69
3301 5401 2.821810 GGAGAAAGAGCAGCCCGC 60.822 66.667 0.00 0.00 42.91 6.13
3302 5402 1.449246 CTGGAGAAAGAGCAGCCCG 60.449 63.158 0.00 0.00 0.00 6.13
3303 5403 1.077858 CCTGGAGAAAGAGCAGCCC 60.078 63.158 0.00 0.00 0.00 5.19
3304 5404 0.107752 CTCCTGGAGAAAGAGCAGCC 60.108 60.000 19.13 0.00 0.00 4.85
3305 5405 3.457099 CTCCTGGAGAAAGAGCAGC 57.543 57.895 19.13 0.00 0.00 5.25
3309 5409 1.519719 CCCGCTCCTGGAGAAAGAG 59.480 63.158 27.53 11.35 0.00 2.85
3310 5410 2.660064 GCCCGCTCCTGGAGAAAGA 61.660 63.158 27.53 0.00 0.00 2.52
3311 5411 2.124942 GCCCGCTCCTGGAGAAAG 60.125 66.667 27.53 16.01 0.00 2.62
3312 5412 2.185310 GAAGCCCGCTCCTGGAGAAA 62.185 60.000 27.53 0.00 0.00 2.52
3313 5413 2.607750 AAGCCCGCTCCTGGAGAA 60.608 61.111 27.53 0.00 0.00 2.87
3314 5414 3.077556 GAAGCCCGCTCCTGGAGA 61.078 66.667 27.53 0.00 0.00 3.71
3315 5415 2.664081 AAGAAGCCCGCTCCTGGAG 61.664 63.158 19.55 19.55 0.00 3.86
3316 5416 2.607750 AAGAAGCCCGCTCCTGGA 60.608 61.111 0.00 0.00 0.00 3.86
3317 5417 2.437359 CAAGAAGCCCGCTCCTGG 60.437 66.667 0.00 0.00 0.00 4.45
3318 5418 1.003355 TTCAAGAAGCCCGCTCCTG 60.003 57.895 0.00 0.00 0.00 3.86
3319 5419 1.298014 CTTCAAGAAGCCCGCTCCT 59.702 57.895 0.00 0.00 0.00 3.69
3320 5420 3.896479 CTTCAAGAAGCCCGCTCC 58.104 61.111 0.00 0.00 0.00 4.70
3328 5428 1.801178 GAACGACCCAGCTTCAAGAAG 59.199 52.381 5.46 5.46 41.24 2.85
3329 5429 1.872237 CGAACGACCCAGCTTCAAGAA 60.872 52.381 0.00 0.00 0.00 2.52
3330 5430 0.319555 CGAACGACCCAGCTTCAAGA 60.320 55.000 0.00 0.00 0.00 3.02
3331 5431 1.291877 CCGAACGACCCAGCTTCAAG 61.292 60.000 0.00 0.00 0.00 3.02
3332 5432 1.301401 CCGAACGACCCAGCTTCAA 60.301 57.895 0.00 0.00 0.00 2.69
3333 5433 2.342279 CCGAACGACCCAGCTTCA 59.658 61.111 0.00 0.00 0.00 3.02
3334 5434 3.119096 GCCGAACGACCCAGCTTC 61.119 66.667 0.00 0.00 0.00 3.86
3335 5435 3.626924 AGCCGAACGACCCAGCTT 61.627 61.111 0.00 0.00 0.00 3.74
3336 5436 4.379243 CAGCCGAACGACCCAGCT 62.379 66.667 0.00 0.00 0.00 4.24
3340 5440 4.699522 AAGCCAGCCGAACGACCC 62.700 66.667 0.00 0.00 0.00 4.46
3341 5441 3.119096 GAAGCCAGCCGAACGACC 61.119 66.667 0.00 0.00 0.00 4.79
3342 5442 2.048127 AGAAGCCAGCCGAACGAC 60.048 61.111 0.00 0.00 0.00 4.34
3343 5443 2.048222 CAGAAGCCAGCCGAACGA 60.048 61.111 0.00 0.00 0.00 3.85
3344 5444 3.793144 GCAGAAGCCAGCCGAACG 61.793 66.667 0.00 0.00 33.58 3.95
3345 5445 2.359230 AGCAGAAGCCAGCCGAAC 60.359 61.111 0.00 0.00 43.56 3.95
3346 5446 2.359107 CAGCAGAAGCCAGCCGAA 60.359 61.111 0.00 0.00 43.56 4.30
3347 5447 4.399395 CCAGCAGAAGCCAGCCGA 62.399 66.667 0.00 0.00 43.56 5.54
3349 5449 2.621517 ATAGCCAGCAGAAGCCAGCC 62.622 60.000 0.00 0.00 43.56 4.85
3350 5450 0.750911 AATAGCCAGCAGAAGCCAGC 60.751 55.000 0.00 0.00 43.56 4.85
3351 5451 1.674962 GAAATAGCCAGCAGAAGCCAG 59.325 52.381 0.00 0.00 43.56 4.85
3352 5452 1.683011 GGAAATAGCCAGCAGAAGCCA 60.683 52.381 0.00 0.00 43.56 4.75
3353 5453 1.028130 GGAAATAGCCAGCAGAAGCC 58.972 55.000 0.00 0.00 43.56 4.35
3354 5454 1.755179 TGGAAATAGCCAGCAGAAGC 58.245 50.000 0.00 0.00 42.56 3.86
3372 5472 3.056536 TCTTCTCCACGATCCAACTTCTG 60.057 47.826 0.00 0.00 0.00 3.02
3373 5473 3.056465 GTCTTCTCCACGATCCAACTTCT 60.056 47.826 0.00 0.00 0.00 2.85
3374 5474 3.254892 GTCTTCTCCACGATCCAACTTC 58.745 50.000 0.00 0.00 0.00 3.01
3375 5475 2.028020 GGTCTTCTCCACGATCCAACTT 60.028 50.000 0.00 0.00 0.00 2.66
3376 5476 1.550976 GGTCTTCTCCACGATCCAACT 59.449 52.381 0.00 0.00 0.00 3.16
3377 5477 1.275291 TGGTCTTCTCCACGATCCAAC 59.725 52.381 0.00 0.00 31.96 3.77
3378 5478 1.550524 CTGGTCTTCTCCACGATCCAA 59.449 52.381 0.00 0.00 33.55 3.53
3379 5479 1.186200 CTGGTCTTCTCCACGATCCA 58.814 55.000 0.00 0.00 33.55 3.41
3380 5480 1.475403 TCTGGTCTTCTCCACGATCC 58.525 55.000 0.00 0.00 33.55 3.36
3381 5481 2.732597 CGTTCTGGTCTTCTCCACGATC 60.733 54.545 0.00 0.00 33.55 3.69
3382 5482 1.202582 CGTTCTGGTCTTCTCCACGAT 59.797 52.381 0.00 0.00 33.55 3.73
3383 5483 0.596577 CGTTCTGGTCTTCTCCACGA 59.403 55.000 0.00 0.00 33.55 4.35
3384 5484 0.388649 CCGTTCTGGTCTTCTCCACG 60.389 60.000 0.00 0.00 33.55 4.94
3385 5485 0.037232 CCCGTTCTGGTCTTCTCCAC 60.037 60.000 0.00 0.00 35.15 4.02
3386 5486 1.192146 CCCCGTTCTGGTCTTCTCCA 61.192 60.000 0.00 0.00 35.15 3.86
3387 5487 1.597461 CCCCGTTCTGGTCTTCTCC 59.403 63.158 0.00 0.00 35.15 3.71
3388 5488 1.079057 GCCCCGTTCTGGTCTTCTC 60.079 63.158 0.00 0.00 35.15 2.87
3389 5489 2.593956 GGCCCCGTTCTGGTCTTCT 61.594 63.158 0.00 0.00 35.15 2.85
3390 5490 1.262640 TAGGCCCCGTTCTGGTCTTC 61.263 60.000 0.00 0.00 39.05 2.87
3391 5491 0.838987 TTAGGCCCCGTTCTGGTCTT 60.839 55.000 0.00 0.00 39.05 3.01
3392 5492 1.229400 TTAGGCCCCGTTCTGGTCT 60.229 57.895 0.00 0.00 41.69 3.85
3393 5493 1.221021 CTTAGGCCCCGTTCTGGTC 59.779 63.158 0.00 0.00 35.15 4.02
3394 5494 1.538135 ACTTAGGCCCCGTTCTGGT 60.538 57.895 0.00 0.00 35.15 4.00
3395 5495 1.221021 GACTTAGGCCCCGTTCTGG 59.779 63.158 0.00 0.00 37.55 3.86
3396 5496 0.613777 AAGACTTAGGCCCCGTTCTG 59.386 55.000 0.00 0.00 0.00 3.02
3397 5497 0.903236 GAAGACTTAGGCCCCGTTCT 59.097 55.000 0.00 0.00 0.00 3.01
3398 5498 0.903236 AGAAGACTTAGGCCCCGTTC 59.097 55.000 0.00 0.00 0.00 3.95
3399 5499 1.278413 GAAGAAGACTTAGGCCCCGTT 59.722 52.381 0.00 0.00 36.39 4.44
3400 5500 0.903236 GAAGAAGACTTAGGCCCCGT 59.097 55.000 0.00 0.00 36.39 5.28
3401 5501 0.178301 GGAAGAAGACTTAGGCCCCG 59.822 60.000 0.00 0.00 36.39 5.73
3402 5502 1.585895 AGGAAGAAGACTTAGGCCCC 58.414 55.000 0.00 0.00 36.39 5.80
3403 5503 3.722908 AAAGGAAGAAGACTTAGGCCC 57.277 47.619 0.00 0.00 36.39 5.80
3404 5504 3.191581 GCAAAAGGAAGAAGACTTAGGCC 59.808 47.826 0.00 0.00 36.39 5.19
3405 5505 4.075682 AGCAAAAGGAAGAAGACTTAGGC 58.924 43.478 0.00 0.00 36.39 3.93
3406 5506 4.083057 GCAGCAAAAGGAAGAAGACTTAGG 60.083 45.833 0.00 0.00 36.39 2.69
3407 5507 4.516698 TGCAGCAAAAGGAAGAAGACTTAG 59.483 41.667 0.00 0.00 36.39 2.18
3464 5564 4.890158 TGAGCAACAGAGAAACCATAGA 57.110 40.909 0.00 0.00 0.00 1.98
3623 5723 2.036387 CCCGGGAAAAAGAAGGTTTGT 58.964 47.619 18.48 0.00 0.00 2.83
3631 5731 3.250734 TCGCCCCCGGGAAAAAGA 61.251 61.111 26.32 11.11 37.50 2.52
3632 5732 2.750237 CTCGCCCCCGGGAAAAAG 60.750 66.667 26.32 10.44 36.99 2.27
4100 7043 5.277857 AGTACCCTCGGTCTCATTATTTG 57.722 43.478 0.00 0.00 37.09 2.32
4542 7492 6.929049 CACATAGCCTTCGACCTAAAATATCA 59.071 38.462 0.00 0.00 0.00 2.15
4543 7493 6.128526 GCACATAGCCTTCGACCTAAAATATC 60.129 42.308 0.00 0.00 37.23 1.63
4633 7583 7.602644 AGAGCATAGTGTCGTTATTTCTCAAAA 59.397 33.333 0.00 0.00 0.00 2.44
4773 7726 9.959721 ACAGTATTTTAGTGTTCATCAAGGTAT 57.040 29.630 0.00 0.00 39.19 2.73
5232 8400 6.198650 TCAACATTATCATTGGTGCTTGAG 57.801 37.500 0.00 0.00 31.71 3.02
5704 8875 0.737715 CTGCGTCTTAGGACAGGTGC 60.738 60.000 5.77 1.04 42.21 5.01
5830 9001 7.011576 CGGTACATGTTGCTGGTGTATTATTAA 59.988 37.037 2.30 0.00 31.71 1.40
6308 9479 9.542462 TGATAGATACACAAGTTAAATAGTGCC 57.458 33.333 0.00 0.00 35.47 5.01
6623 9794 2.061220 CTCCTCCAGCAAGGTCACA 58.939 57.895 0.42 0.00 37.69 3.58
6713 9884 2.698763 GGCTTGGCTCTGCTGCTTC 61.699 63.158 0.00 0.00 0.00 3.86
6842 10013 3.959449 CACCTCATCTCTCAGGAAGATGA 59.041 47.826 13.49 13.49 44.00 2.92
6854 10025 6.465948 AGCTAATGATCATTCACCTCATCTC 58.534 40.000 23.95 3.49 33.85 2.75
6879 10050 3.265995 ACAAACCACTACCTAGAATGGGG 59.734 47.826 0.00 0.00 43.69 4.96
6881 10052 6.894339 AAAACAAACCACTACCTAGAATGG 57.106 37.500 0.00 0.00 38.26 3.16
7209 10391 4.832266 ACTGAAGCTCTCTTCTTTCTCAGA 59.168 41.667 10.78 0.00 46.81 3.27
7339 10529 3.620488 GGGCAGATTAATCAGAACACCA 58.380 45.455 17.56 0.00 0.00 4.17
7358 10552 0.880441 TCATGACAACAACATGCGGG 59.120 50.000 0.00 0.00 43.03 6.13
7666 10903 2.746269 TGACGAAAGGAAAGGTACGTG 58.254 47.619 0.00 0.00 34.26 4.49
7676 10914 1.070105 CCCACCGTTGACGAAAGGA 59.930 57.895 4.91 0.00 43.02 3.36
7775 11017 3.142174 AGTCTAACAGCAAACCAAGCTC 58.858 45.455 0.00 0.00 41.14 4.09
7776 11018 3.142174 GAGTCTAACAGCAAACCAAGCT 58.858 45.455 0.00 0.00 44.62 3.74
7777 11019 2.096218 CGAGTCTAACAGCAAACCAAGC 60.096 50.000 0.00 0.00 0.00 4.01
7778 11020 3.390135 TCGAGTCTAACAGCAAACCAAG 58.610 45.455 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.