Multiple sequence alignment - TraesCS4D01G207600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G207600 chr4D 100.000 3371 0 0 1 3371 356560885 356564255 0.000000e+00 6226
1 TraesCS4D01G207600 chr4B 95.231 2705 47 13 563 3240 440045667 440048316 0.000000e+00 4205
2 TraesCS4D01G207600 chr4B 92.152 395 14 3 1 389 440045290 440045673 2.960000e-150 542
3 TraesCS4D01G207600 chr4B 96.532 173 5 1 390 562 642775434 642775263 5.510000e-73 285
4 TraesCS4D01G207600 chr4B 98.507 134 1 1 3238 3371 440048445 440048577 5.620000e-58 235
5 TraesCS4D01G207600 chr4A 95.183 2699 63 29 723 3371 108873210 108870529 0.000000e+00 4202
6 TraesCS4D01G207600 chr4A 94.886 176 5 4 564 738 108873330 108873158 4.290000e-69 272
7 TraesCS4D01G207600 chr4A 91.803 122 9 1 279 400 108873429 108873309 5.780000e-38 169
8 TraesCS4D01G207600 chr3B 100.000 173 0 0 390 562 693340195 693340023 1.510000e-83 320
9 TraesCS4D01G207600 chr3B 87.192 203 26 0 1445 1647 828111450 828111652 7.270000e-57 231
10 TraesCS4D01G207600 chr3B 83.981 206 33 0 1438 1643 675649883 675650088 7.380000e-47 198
11 TraesCS4D01G207600 chr3A 98.824 170 2 0 390 559 45126069 45126238 1.520000e-78 303
12 TraesCS4D01G207600 chr3A 86.700 203 27 0 1445 1647 744879520 744879722 3.380000e-55 226
13 TraesCS4D01G207600 chr3A 84.264 197 31 0 1454 1650 750298743 750298547 3.430000e-45 193
14 TraesCS4D01G207600 chr1B 98.266 173 3 0 390 562 141109861 141109689 1.520000e-78 303
15 TraesCS4D01G207600 chr7D 98.235 170 3 0 390 559 38077600 38077769 7.070000e-77 298
16 TraesCS4D01G207600 chr2B 96.471 170 5 1 393 562 555319865 555319697 2.560000e-71 279
17 TraesCS4D01G207600 chr7A 94.798 173 8 1 390 562 733370591 733370420 5.540000e-68 268
18 TraesCS4D01G207600 chr7A 93.642 173 10 1 390 562 631446434 631446263 1.200000e-64 257
19 TraesCS4D01G207600 chr2A 95.294 170 6 1 390 559 756216938 756217105 5.540000e-68 268
20 TraesCS4D01G207600 chr3D 87.192 203 26 0 1445 1647 610544050 610544252 7.270000e-57 231
21 TraesCS4D01G207600 chr3D 87.195 164 21 0 1454 1617 613806079 613805916 1.600000e-43 187
22 TraesCS4D01G207600 chr6A 85.465 172 21 4 1479 1648 520355733 520355564 3.460000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G207600 chr4D 356560885 356564255 3370 False 6226.000000 6226 100.000000 1 3371 1 chr4D.!!$F1 3370
1 TraesCS4D01G207600 chr4B 440045290 440048577 3287 False 1660.666667 4205 95.296667 1 3371 3 chr4B.!!$F1 3370
2 TraesCS4D01G207600 chr4A 108870529 108873429 2900 True 1547.666667 4202 93.957333 279 3371 3 chr4A.!!$R1 3092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 534 0.035534 TGGTGCTGCCACGTATGAAT 60.036 50.0 0.0 0.0 43.61 2.57 F
543 550 0.040958 GAATCGTTCATGCATCGGCC 60.041 55.0 0.0 0.0 40.13 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1709 3.679389 TGAAGAAGAAGATGGCTTGGAC 58.321 45.455 0.0 0.0 33.61 4.02 R
2455 2491 8.540388 ACTAGTACCTGATGAAGAATTAAAGCA 58.460 33.333 0.0 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.749649 TCCCATTTTTGCAGCACGTT 59.250 45.000 0.00 0.00 0.00 3.99
44 45 2.789409 AATAGGTGACAGAAGCCCAC 57.211 50.000 0.00 0.00 0.00 4.61
46 47 0.976641 TAGGTGACAGAAGCCCACAG 59.023 55.000 0.00 0.00 32.79 3.66
48 49 0.603975 GGTGACAGAAGCCCACAGTC 60.604 60.000 0.00 0.00 32.79 3.51
61 62 1.679139 CACAGTCAGGTGGCTTCAAA 58.321 50.000 0.00 0.00 35.13 2.69
62 63 2.233271 CACAGTCAGGTGGCTTCAAAT 58.767 47.619 0.00 0.00 35.13 2.32
63 64 3.411446 CACAGTCAGGTGGCTTCAAATA 58.589 45.455 0.00 0.00 35.13 1.40
64 65 3.438087 CACAGTCAGGTGGCTTCAAATAG 59.562 47.826 0.00 0.00 35.13 1.73
65 66 3.073062 ACAGTCAGGTGGCTTCAAATAGT 59.927 43.478 0.00 0.00 0.00 2.12
66 67 3.686726 CAGTCAGGTGGCTTCAAATAGTC 59.313 47.826 0.00 0.00 0.00 2.59
67 68 3.584848 AGTCAGGTGGCTTCAAATAGTCT 59.415 43.478 0.00 0.00 0.00 3.24
68 69 3.935828 GTCAGGTGGCTTCAAATAGTCTC 59.064 47.826 0.00 0.00 0.00 3.36
69 70 3.055094 TCAGGTGGCTTCAAATAGTCTCC 60.055 47.826 0.00 0.00 34.43 3.71
70 71 2.093447 AGGTGGCTTCAAATAGTCTCCG 60.093 50.000 0.00 0.00 38.20 4.63
71 72 2.280628 GTGGCTTCAAATAGTCTCCGG 58.719 52.381 0.00 0.00 0.00 5.14
72 73 2.093658 GTGGCTTCAAATAGTCTCCGGA 60.094 50.000 2.93 2.93 0.00 5.14
178 185 2.575694 ATGAGCGATGAGACACTGTC 57.424 50.000 0.38 0.38 0.00 3.51
345 352 1.457009 CGTTTTGCGGGGGAAAAGGA 61.457 55.000 8.66 0.00 39.69 3.36
390 397 6.821388 GGCAACTTTAATATCTCTCTCTCCA 58.179 40.000 0.00 0.00 0.00 3.86
391 398 7.275920 GGCAACTTTAATATCTCTCTCTCCAA 58.724 38.462 0.00 0.00 0.00 3.53
392 399 7.770897 GGCAACTTTAATATCTCTCTCTCCAAA 59.229 37.037 0.00 0.00 0.00 3.28
393 400 9.167311 GCAACTTTAATATCTCTCTCTCCAAAA 57.833 33.333 0.00 0.00 0.00 2.44
398 405 9.911788 TTTAATATCTCTCTCTCCAAAATTGCT 57.088 29.630 0.00 0.00 0.00 3.91
399 406 9.911788 TTAATATCTCTCTCTCCAAAATTGCTT 57.088 29.630 0.00 0.00 0.00 3.91
400 407 8.820153 AATATCTCTCTCTCCAAAATTGCTTT 57.180 30.769 0.00 0.00 0.00 3.51
401 408 9.911788 AATATCTCTCTCTCCAAAATTGCTTTA 57.088 29.630 0.00 0.00 0.00 1.85
402 409 7.622893 ATCTCTCTCTCCAAAATTGCTTTAC 57.377 36.000 0.00 0.00 0.00 2.01
403 410 6.533730 TCTCTCTCTCCAAAATTGCTTTACA 58.466 36.000 0.00 0.00 0.00 2.41
404 411 6.428159 TCTCTCTCTCCAAAATTGCTTTACAC 59.572 38.462 0.00 0.00 0.00 2.90
405 412 6.061441 TCTCTCTCCAAAATTGCTTTACACA 58.939 36.000 0.00 0.00 0.00 3.72
406 413 6.017109 TCTCTCTCCAAAATTGCTTTACACAC 60.017 38.462 0.00 0.00 0.00 3.82
407 414 4.854399 TCTCCAAAATTGCTTTACACACG 58.146 39.130 0.00 0.00 0.00 4.49
408 415 4.576873 TCTCCAAAATTGCTTTACACACGA 59.423 37.500 0.00 0.00 0.00 4.35
409 416 4.602995 TCCAAAATTGCTTTACACACGAC 58.397 39.130 0.00 0.00 0.00 4.34
410 417 3.420576 CCAAAATTGCTTTACACACGACG 59.579 43.478 0.00 0.00 0.00 5.12
411 418 2.961522 AATTGCTTTACACACGACGG 57.038 45.000 0.00 0.00 0.00 4.79
412 419 1.873698 ATTGCTTTACACACGACGGT 58.126 45.000 0.00 0.00 0.00 4.83
413 420 1.654317 TTGCTTTACACACGACGGTT 58.346 45.000 0.00 0.00 0.00 4.44
414 421 2.505628 TGCTTTACACACGACGGTTA 57.494 45.000 0.00 0.00 0.00 2.85
415 422 2.396601 TGCTTTACACACGACGGTTAG 58.603 47.619 0.00 0.00 0.00 2.34
416 423 2.223782 TGCTTTACACACGACGGTTAGT 60.224 45.455 0.00 0.00 0.00 2.24
417 424 2.154389 GCTTTACACACGACGGTTAGTG 59.846 50.000 13.63 13.63 43.46 2.74
418 425 1.769733 TTACACACGACGGTTAGTGC 58.230 50.000 14.69 0.00 41.72 4.40
419 426 0.667453 TACACACGACGGTTAGTGCA 59.333 50.000 14.69 0.00 41.72 4.57
420 427 0.872881 ACACACGACGGTTAGTGCAC 60.873 55.000 9.40 9.40 41.72 4.57
421 428 1.659335 ACACGACGGTTAGTGCACG 60.659 57.895 12.01 0.95 41.72 5.34
422 429 1.370778 CACGACGGTTAGTGCACGA 60.371 57.895 12.01 2.52 0.00 4.35
423 430 1.370900 ACGACGGTTAGTGCACGAC 60.371 57.895 12.01 14.04 0.00 4.34
424 431 2.423031 CGACGGTTAGTGCACGACG 61.423 63.158 12.01 16.25 39.01 5.12
425 432 2.713894 GACGGTTAGTGCACGACGC 61.714 63.158 19.78 12.28 42.89 5.19
426 433 2.430244 CGGTTAGTGCACGACGCT 60.430 61.111 12.01 0.00 43.06 5.07
427 434 2.019951 CGGTTAGTGCACGACGCTT 61.020 57.895 12.01 0.00 43.06 4.68
428 435 1.491563 GGTTAGTGCACGACGCTTG 59.508 57.895 12.01 0.00 43.06 4.01
429 436 1.154654 GTTAGTGCACGACGCTTGC 60.155 57.895 12.01 3.65 43.06 4.01
434 441 3.777925 GCACGACGCTTGCACGAT 61.778 61.111 3.48 0.00 39.93 3.73
435 442 2.853210 CACGACGCTTGCACGATT 59.147 55.556 3.48 0.00 36.70 3.34
436 443 1.225475 CACGACGCTTGCACGATTC 60.225 57.895 3.48 0.00 36.70 2.52
437 444 1.372997 ACGACGCTTGCACGATTCT 60.373 52.632 3.48 0.00 36.70 2.40
438 445 1.341802 CGACGCTTGCACGATTCTC 59.658 57.895 3.48 0.00 36.70 2.87
439 446 1.710339 GACGCTTGCACGATTCTCC 59.290 57.895 3.48 0.00 36.70 3.71
440 447 1.696832 GACGCTTGCACGATTCTCCC 61.697 60.000 3.48 0.00 36.70 4.30
441 448 1.448540 CGCTTGCACGATTCTCCCT 60.449 57.895 0.00 0.00 34.06 4.20
442 449 1.424493 CGCTTGCACGATTCTCCCTC 61.424 60.000 0.00 0.00 34.06 4.30
443 450 1.092345 GCTTGCACGATTCTCCCTCC 61.092 60.000 0.00 0.00 0.00 4.30
444 451 0.462759 CTTGCACGATTCTCCCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
445 452 1.910580 TTGCACGATTCTCCCTCCCC 61.911 60.000 0.00 0.00 0.00 4.81
446 453 2.367202 GCACGATTCTCCCTCCCCA 61.367 63.158 0.00 0.00 0.00 4.96
447 454 1.910580 GCACGATTCTCCCTCCCCAA 61.911 60.000 0.00 0.00 0.00 4.12
448 455 0.107654 CACGATTCTCCCTCCCCAAC 60.108 60.000 0.00 0.00 0.00 3.77
449 456 0.546747 ACGATTCTCCCTCCCCAACA 60.547 55.000 0.00 0.00 0.00 3.33
450 457 0.179000 CGATTCTCCCTCCCCAACAG 59.821 60.000 0.00 0.00 0.00 3.16
451 458 0.548510 GATTCTCCCTCCCCAACAGG 59.451 60.000 0.00 0.00 0.00 4.00
460 467 2.935481 CCCAACAGGGCTCCTCCA 60.935 66.667 0.00 0.00 35.34 3.86
461 468 2.352805 CCAACAGGGCTCCTCCAC 59.647 66.667 0.00 0.00 36.21 4.02
462 469 2.528818 CCAACAGGGCTCCTCCACA 61.529 63.158 0.00 0.00 36.21 4.17
463 470 1.302832 CAACAGGGCTCCTCCACAC 60.303 63.158 0.00 0.00 36.21 3.82
464 471 1.770110 AACAGGGCTCCTCCACACA 60.770 57.895 0.00 0.00 36.21 3.72
465 472 2.056906 AACAGGGCTCCTCCACACAC 62.057 60.000 0.00 0.00 36.21 3.82
466 473 3.314331 AGGGCTCCTCCACACACG 61.314 66.667 0.00 0.00 36.21 4.49
467 474 4.394712 GGGCTCCTCCACACACGG 62.395 72.222 0.00 0.00 36.21 4.94
468 475 3.626924 GGCTCCTCCACACACGGT 61.627 66.667 0.00 0.00 34.01 4.83
476 483 3.653009 CACACACGGTGGCTGCTG 61.653 66.667 13.48 3.65 44.04 4.41
477 484 4.935495 ACACACGGTGGCTGCTGG 62.935 66.667 13.48 0.00 37.94 4.85
478 485 4.935495 CACACGGTGGCTGCTGGT 62.935 66.667 13.48 0.00 0.00 4.00
479 486 4.935495 ACACGGTGGCTGCTGGTG 62.935 66.667 13.48 5.58 34.87 4.17
483 490 2.914097 GGTGGCTGCTGGTGCTTT 60.914 61.111 0.00 0.00 40.48 3.51
484 491 2.501602 GGTGGCTGCTGGTGCTTTT 61.502 57.895 0.00 0.00 40.48 2.27
485 492 1.442987 GTGGCTGCTGGTGCTTTTT 59.557 52.632 0.00 0.00 40.48 1.94
505 512 5.873179 TTTTTAATTGAGAATCGGTCGCT 57.127 34.783 0.00 0.00 38.61 4.93
506 513 4.857871 TTTAATTGAGAATCGGTCGCTG 57.142 40.909 0.00 0.00 38.61 5.18
507 514 1.009829 AATTGAGAATCGGTCGCTGC 58.990 50.000 0.00 0.00 38.61 5.25
508 515 0.176680 ATTGAGAATCGGTCGCTGCT 59.823 50.000 0.00 0.00 38.61 4.24
509 516 0.737367 TTGAGAATCGGTCGCTGCTG 60.737 55.000 0.00 0.00 38.61 4.41
510 517 1.880340 GAGAATCGGTCGCTGCTGG 60.880 63.158 0.00 0.00 0.00 4.85
511 518 2.125512 GAATCGGTCGCTGCTGGT 60.126 61.111 0.00 0.00 0.00 4.00
512 519 2.434884 AATCGGTCGCTGCTGGTG 60.435 61.111 0.00 0.00 0.00 4.17
522 529 3.881952 CTGCTGGTGCTGCCACGTA 62.882 63.158 0.00 0.00 43.61 3.57
523 530 2.436646 GCTGGTGCTGCCACGTAT 60.437 61.111 0.00 0.00 43.61 3.06
524 531 2.753966 GCTGGTGCTGCCACGTATG 61.754 63.158 0.00 0.00 43.61 2.39
525 532 1.079197 CTGGTGCTGCCACGTATGA 60.079 57.895 0.00 0.00 43.61 2.15
526 533 0.673333 CTGGTGCTGCCACGTATGAA 60.673 55.000 0.00 0.00 43.61 2.57
527 534 0.035534 TGGTGCTGCCACGTATGAAT 60.036 50.000 0.00 0.00 43.61 2.57
528 535 0.657840 GGTGCTGCCACGTATGAATC 59.342 55.000 0.00 0.00 43.00 2.52
529 536 0.301687 GTGCTGCCACGTATGAATCG 59.698 55.000 0.00 0.00 31.34 3.34
530 537 0.108377 TGCTGCCACGTATGAATCGT 60.108 50.000 0.00 0.00 42.33 3.73
531 538 1.006832 GCTGCCACGTATGAATCGTT 58.993 50.000 0.00 0.00 39.55 3.85
532 539 1.004927 GCTGCCACGTATGAATCGTTC 60.005 52.381 0.00 0.00 39.55 3.95
533 540 2.267426 CTGCCACGTATGAATCGTTCA 58.733 47.619 0.00 3.49 45.01 3.18
542 549 0.657312 TGAATCGTTCATGCATCGGC 59.343 50.000 0.00 0.00 36.06 5.54
543 550 0.040958 GAATCGTTCATGCATCGGCC 60.041 55.000 0.00 0.00 40.13 6.13
544 551 1.775039 AATCGTTCATGCATCGGCCG 61.775 55.000 22.12 22.12 40.13 6.13
545 552 2.923426 ATCGTTCATGCATCGGCCGT 62.923 55.000 27.15 10.00 40.13 5.68
546 553 2.404789 GTTCATGCATCGGCCGTG 59.595 61.111 27.15 22.51 40.13 4.94
547 554 3.507924 TTCATGCATCGGCCGTGC 61.508 61.111 32.27 32.27 42.81 5.34
559 566 2.494445 CCGTGCAGGCATCGTCTA 59.506 61.111 0.00 0.00 0.00 2.59
560 567 1.068083 CCGTGCAGGCATCGTCTAT 59.932 57.895 0.00 0.00 0.00 1.98
561 568 0.941463 CCGTGCAGGCATCGTCTATC 60.941 60.000 0.00 0.00 0.00 2.08
562 569 0.941463 CGTGCAGGCATCGTCTATCC 60.941 60.000 0.00 0.00 0.00 2.59
563 570 0.390860 GTGCAGGCATCGTCTATCCT 59.609 55.000 0.00 0.00 0.00 3.24
564 571 0.676184 TGCAGGCATCGTCTATCCTC 59.324 55.000 0.00 0.00 0.00 3.71
565 572 0.965439 GCAGGCATCGTCTATCCTCT 59.035 55.000 0.00 0.00 0.00 3.69
583 590 4.397730 TCCTCTCTCTCTCTCAAACATTCG 59.602 45.833 0.00 0.00 0.00 3.34
706 713 2.015726 TCTCCTCCCCCTCCTCCTC 61.016 68.421 0.00 0.00 0.00 3.71
707 714 3.036959 TCCTCCCCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
708 715 3.039526 CCTCCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
709 716 2.612251 CTCCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
710 717 3.036959 TCCCCCTCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
711 718 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
712 719 2.612251 CCCCTCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
713 720 2.018086 CCCCTCCTCCTCCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
714 721 1.541672 CCCTCCTCCTCCTCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
715 722 0.998945 CCCTCCTCCTCCTCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
716 723 0.478507 CCTCCTCCTCCTCCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
717 724 1.522900 CTCCTCCTCCTCCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
718 725 1.421646 CTCCTCCTCCTCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
719 726 1.010793 TCCTCCTCCTCCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
720 727 1.421646 CCTCCTCCTCCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
721 728 2.412591 CTCCTCCTCCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
722 729 2.780010 CTCCTCCTCCTCTCTCTCTCTT 59.220 54.545 0.00 0.00 0.00 2.85
723 730 3.197983 TCCTCCTCCTCTCTCTCTCTTT 58.802 50.000 0.00 0.00 0.00 2.52
724 731 3.202151 TCCTCCTCCTCTCTCTCTCTTTC 59.798 52.174 0.00 0.00 0.00 2.62
725 732 3.203040 CCTCCTCCTCTCTCTCTCTTTCT 59.797 52.174 0.00 0.00 0.00 2.52
726 733 4.455606 CTCCTCCTCTCTCTCTCTTTCTC 58.544 52.174 0.00 0.00 0.00 2.87
727 734 4.111577 TCCTCCTCTCTCTCTCTTTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
728 735 4.164221 TCCTCCTCTCTCTCTCTTTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
729 736 4.164988 CCTCCTCTCTCTCTCTTTCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
730 737 5.359194 TCCTCTCTCTCTCTTTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
731 738 5.032846 TCCTCTCTCTCTCTTTCTCTCTCT 58.967 45.833 0.00 0.00 0.00 3.10
732 739 5.129485 TCCTCTCTCTCTCTTTCTCTCTCTC 59.871 48.000 0.00 0.00 0.00 3.20
733 740 5.130145 CCTCTCTCTCTCTTTCTCTCTCTCT 59.870 48.000 0.00 0.00 0.00 3.10
734 741 6.227298 TCTCTCTCTCTTTCTCTCTCTCTC 57.773 45.833 0.00 0.00 0.00 3.20
735 742 5.960811 TCTCTCTCTCTTTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
895 902 4.159321 TGCAAACACAAATCCTCAACAAGA 59.841 37.500 0.00 0.00 0.00 3.02
1134 1151 1.176619 TGCGATCCGTCCGTCCATAT 61.177 55.000 0.00 0.00 0.00 1.78
1162 1179 6.718454 AGCTTCTTCATGGAAAGAGAATTTGA 59.282 34.615 0.00 0.00 36.66 2.69
1183 1200 8.722342 TTTGACAAAATTAAAGTAGCTTAGCG 57.278 30.769 0.00 0.00 0.00 4.26
1294 1311 2.672307 AGCAAGGTCAGCAGCAGC 60.672 61.111 0.00 0.00 42.56 5.25
1756 1773 2.837498 CGTCATCTATGCCATCAACCA 58.163 47.619 0.00 0.00 0.00 3.67
2255 2278 1.227674 CTCTACGCCAAGGGGATGC 60.228 63.158 10.39 0.00 35.59 3.91
2455 2491 6.954102 AGTGCTAAATTAAAGAAGGGGTTCAT 59.046 34.615 0.00 0.00 0.00 2.57
2568 2620 4.872691 TGGTTAACACTTTTGCACCATTTG 59.127 37.500 8.10 0.00 29.52 2.32
2838 2909 5.187967 AGTGTATTCCGATGTTCCTCTCTTT 59.812 40.000 0.00 0.00 0.00 2.52
2839 2910 6.380274 AGTGTATTCCGATGTTCCTCTCTTTA 59.620 38.462 0.00 0.00 0.00 1.85
2840 2911 7.039882 GTGTATTCCGATGTTCCTCTCTTTAA 58.960 38.462 0.00 0.00 0.00 1.52
2841 2912 7.711339 GTGTATTCCGATGTTCCTCTCTTTAAT 59.289 37.037 0.00 0.00 0.00 1.40
2842 2913 8.265055 TGTATTCCGATGTTCCTCTCTTTAATT 58.735 33.333 0.00 0.00 0.00 1.40
3022 3093 4.226427 AGTTGCCTGCTTATCAGAATCA 57.774 40.909 0.00 0.00 45.72 2.57
3072 3144 4.941263 CGGTTCCAAATCTCTAAACATGGA 59.059 41.667 0.00 0.00 35.27 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.936498 GTCACCTATTATGCAACGTGCT 59.064 45.455 10.54 1.17 45.31 4.40
20 21 3.433598 GGGCTTCTGTCACCTATTATGCA 60.434 47.826 0.00 0.00 0.00 3.96
44 45 3.679389 ACTATTTGAAGCCACCTGACTG 58.321 45.455 0.00 0.00 0.00 3.51
46 47 3.935828 GAGACTATTTGAAGCCACCTGAC 59.064 47.826 0.00 0.00 0.00 3.51
48 49 3.274288 GGAGACTATTTGAAGCCACCTG 58.726 50.000 0.00 0.00 0.00 4.00
61 62 0.847373 TGAGCCTCTCCGGAGACTAT 59.153 55.000 30.49 17.78 41.86 2.12
62 63 0.624254 TTGAGCCTCTCCGGAGACTA 59.376 55.000 30.49 14.37 41.86 2.59
63 64 0.682855 CTTGAGCCTCTCCGGAGACT 60.683 60.000 30.49 25.42 41.86 3.24
64 65 0.681564 TCTTGAGCCTCTCCGGAGAC 60.682 60.000 30.49 21.05 41.86 3.36
65 66 0.395036 CTCTTGAGCCTCTCCGGAGA 60.395 60.000 31.67 31.67 41.86 3.71
66 67 2.015227 GCTCTTGAGCCTCTCCGGAG 62.015 65.000 26.32 26.32 39.18 4.63
67 68 2.055042 GCTCTTGAGCCTCTCCGGA 61.055 63.158 2.93 2.93 33.16 5.14
68 69 1.892819 TTGCTCTTGAGCCTCTCCGG 61.893 60.000 18.48 0.00 0.00 5.14
69 70 0.459934 CTTGCTCTTGAGCCTCTCCG 60.460 60.000 18.48 0.00 0.00 4.63
70 71 0.901124 TCTTGCTCTTGAGCCTCTCC 59.099 55.000 18.48 0.00 0.00 3.71
71 72 2.758736 TTCTTGCTCTTGAGCCTCTC 57.241 50.000 18.48 0.00 0.00 3.20
72 73 4.833478 TTATTCTTGCTCTTGAGCCTCT 57.167 40.909 18.48 3.58 0.00 3.69
86 87 3.278574 TGCGCCTATGCTGTTTATTCTT 58.721 40.909 4.18 0.00 35.36 2.52
97 98 2.959357 GATCCGCTTGCGCCTATGC 61.959 63.158 4.18 2.67 0.00 3.14
178 185 1.600636 TGGGGAGTCTTTTGCAGCG 60.601 57.895 0.00 0.00 0.00 5.18
180 187 2.859165 TAGTGGGGAGTCTTTTGCAG 57.141 50.000 0.00 0.00 0.00 4.41
223 230 8.859090 TGCTAGGATGAGAAAATTCAAAAGAAA 58.141 29.630 0.00 0.00 0.00 2.52
345 352 8.506437 GTTGCCTTAACGTTTAAGGTTAATACT 58.494 33.333 24.66 0.00 44.46 2.12
378 385 7.120432 GTGTAAAGCAATTTTGGAGAGAGAGAT 59.880 37.037 0.00 0.00 0.00 2.75
386 393 4.675114 GTCGTGTGTAAAGCAATTTTGGAG 59.325 41.667 0.00 0.00 0.00 3.86
387 394 4.602995 GTCGTGTGTAAAGCAATTTTGGA 58.397 39.130 0.00 0.00 0.00 3.53
388 395 3.420576 CGTCGTGTGTAAAGCAATTTTGG 59.579 43.478 0.00 0.00 0.00 3.28
389 396 3.420576 CCGTCGTGTGTAAAGCAATTTTG 59.579 43.478 0.00 0.00 0.00 2.44
390 397 3.065648 ACCGTCGTGTGTAAAGCAATTTT 59.934 39.130 0.00 0.00 0.00 1.82
391 398 2.614983 ACCGTCGTGTGTAAAGCAATTT 59.385 40.909 0.00 0.00 0.00 1.82
392 399 2.215196 ACCGTCGTGTGTAAAGCAATT 58.785 42.857 0.00 0.00 0.00 2.32
393 400 1.873698 ACCGTCGTGTGTAAAGCAAT 58.126 45.000 0.00 0.00 0.00 3.56
394 401 1.654317 AACCGTCGTGTGTAAAGCAA 58.346 45.000 0.00 0.00 0.00 3.91
395 402 2.223782 ACTAACCGTCGTGTGTAAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
396 403 2.154389 CACTAACCGTCGTGTGTAAAGC 59.846 50.000 0.00 0.00 0.00 3.51
397 404 2.154389 GCACTAACCGTCGTGTGTAAAG 59.846 50.000 0.00 0.00 33.78 1.85
398 405 2.126467 GCACTAACCGTCGTGTGTAAA 58.874 47.619 0.00 0.00 33.78 2.01
399 406 1.066757 TGCACTAACCGTCGTGTGTAA 59.933 47.619 0.00 0.00 33.78 2.41
400 407 0.667453 TGCACTAACCGTCGTGTGTA 59.333 50.000 0.00 0.00 33.78 2.90
401 408 0.872881 GTGCACTAACCGTCGTGTGT 60.873 55.000 10.32 0.00 33.78 3.72
402 409 1.850640 GTGCACTAACCGTCGTGTG 59.149 57.895 10.32 0.00 33.78 3.82
403 410 1.659335 CGTGCACTAACCGTCGTGT 60.659 57.895 16.19 0.00 33.78 4.49
404 411 1.370778 TCGTGCACTAACCGTCGTG 60.371 57.895 16.19 0.00 0.00 4.35
405 412 1.370900 GTCGTGCACTAACCGTCGT 60.371 57.895 16.19 0.00 0.00 4.34
406 413 2.423031 CGTCGTGCACTAACCGTCG 61.423 63.158 16.19 7.08 0.00 5.12
407 414 2.713894 GCGTCGTGCACTAACCGTC 61.714 63.158 16.19 0.00 45.45 4.79
408 415 2.732094 GCGTCGTGCACTAACCGT 60.732 61.111 16.19 0.00 45.45 4.83
411 418 1.827315 TGCAAGCGTCGTGCACTAAC 61.827 55.000 16.19 11.88 46.76 2.34
412 419 1.592939 TGCAAGCGTCGTGCACTAA 60.593 52.632 16.19 0.00 46.76 2.24
413 420 2.028337 TGCAAGCGTCGTGCACTA 59.972 55.556 16.19 0.00 46.76 2.74
417 424 3.295228 AATCGTGCAAGCGTCGTGC 62.295 57.895 9.89 9.89 46.98 5.34
418 425 1.225475 GAATCGTGCAAGCGTCGTG 60.225 57.895 0.00 0.00 0.00 4.35
419 426 1.344942 GAGAATCGTGCAAGCGTCGT 61.345 55.000 0.00 0.00 0.00 4.34
420 427 1.341802 GAGAATCGTGCAAGCGTCG 59.658 57.895 0.00 0.00 0.00 5.12
421 428 1.696832 GGGAGAATCGTGCAAGCGTC 61.697 60.000 0.00 0.00 34.37 5.19
422 429 1.741770 GGGAGAATCGTGCAAGCGT 60.742 57.895 0.00 0.00 34.37 5.07
423 430 1.424493 GAGGGAGAATCGTGCAAGCG 61.424 60.000 0.00 0.00 34.37 4.68
424 431 1.092345 GGAGGGAGAATCGTGCAAGC 61.092 60.000 0.00 0.00 34.37 4.01
425 432 0.462759 GGGAGGGAGAATCGTGCAAG 60.463 60.000 0.00 0.00 34.37 4.01
426 433 1.602237 GGGAGGGAGAATCGTGCAA 59.398 57.895 0.00 0.00 34.37 4.08
427 434 2.367202 GGGGAGGGAGAATCGTGCA 61.367 63.158 0.00 0.00 34.37 4.57
428 435 1.910580 TTGGGGAGGGAGAATCGTGC 61.911 60.000 0.00 0.00 34.37 5.34
429 436 0.107654 GTTGGGGAGGGAGAATCGTG 60.108 60.000 0.00 0.00 34.37 4.35
430 437 0.546747 TGTTGGGGAGGGAGAATCGT 60.547 55.000 0.00 0.00 34.37 3.73
431 438 0.179000 CTGTTGGGGAGGGAGAATCG 59.821 60.000 0.00 0.00 34.37 3.34
432 439 0.548510 CCTGTTGGGGAGGGAGAATC 59.451 60.000 0.00 0.00 0.00 2.52
433 440 2.715295 CCTGTTGGGGAGGGAGAAT 58.285 57.895 0.00 0.00 0.00 2.40
434 441 4.250699 CCTGTTGGGGAGGGAGAA 57.749 61.111 0.00 0.00 0.00 2.87
444 451 2.352805 GTGGAGGAGCCCTGTTGG 59.647 66.667 0.00 0.00 31.76 3.77
445 452 1.302832 GTGTGGAGGAGCCCTGTTG 60.303 63.158 0.00 0.00 31.76 3.33
446 453 1.770110 TGTGTGGAGGAGCCCTGTT 60.770 57.895 0.00 0.00 31.76 3.16
447 454 2.122413 TGTGTGGAGGAGCCCTGT 60.122 61.111 0.00 0.00 31.76 4.00
448 455 2.348998 GTGTGTGGAGGAGCCCTG 59.651 66.667 0.00 0.00 31.76 4.45
449 456 3.314331 CGTGTGTGGAGGAGCCCT 61.314 66.667 0.00 0.00 36.03 5.19
450 457 4.394712 CCGTGTGTGGAGGAGCCC 62.395 72.222 0.00 0.00 34.97 5.19
451 458 3.626924 ACCGTGTGTGGAGGAGCC 61.627 66.667 0.00 0.00 37.10 4.70
452 459 2.357517 CACCGTGTGTGGAGGAGC 60.358 66.667 0.00 0.00 41.52 4.70
459 466 3.653009 CAGCAGCCACCGTGTGTG 61.653 66.667 0.00 0.00 45.01 3.82
460 467 4.935495 CCAGCAGCCACCGTGTGT 62.935 66.667 0.00 0.00 0.00 3.72
461 468 4.935495 ACCAGCAGCCACCGTGTG 62.935 66.667 0.00 0.00 0.00 3.82
462 469 4.935495 CACCAGCAGCCACCGTGT 62.935 66.667 0.00 0.00 0.00 4.49
466 473 2.031674 AAAAAGCACCAGCAGCCACC 62.032 55.000 0.00 0.00 45.49 4.61
467 474 1.442987 AAAAAGCACCAGCAGCCAC 59.557 52.632 0.00 0.00 45.49 5.01
468 475 3.953300 AAAAAGCACCAGCAGCCA 58.047 50.000 0.00 0.00 45.49 4.75
483 490 5.627172 CAGCGACCGATTCTCAATTAAAAA 58.373 37.500 0.00 0.00 0.00 1.94
484 491 4.436852 GCAGCGACCGATTCTCAATTAAAA 60.437 41.667 0.00 0.00 0.00 1.52
485 492 3.063452 GCAGCGACCGATTCTCAATTAAA 59.937 43.478 0.00 0.00 0.00 1.52
486 493 2.607635 GCAGCGACCGATTCTCAATTAA 59.392 45.455 0.00 0.00 0.00 1.40
487 494 2.159099 AGCAGCGACCGATTCTCAATTA 60.159 45.455 0.00 0.00 0.00 1.40
488 495 1.009829 GCAGCGACCGATTCTCAATT 58.990 50.000 0.00 0.00 0.00 2.32
489 496 0.176680 AGCAGCGACCGATTCTCAAT 59.823 50.000 0.00 0.00 0.00 2.57
490 497 0.737367 CAGCAGCGACCGATTCTCAA 60.737 55.000 0.00 0.00 0.00 3.02
491 498 1.153765 CAGCAGCGACCGATTCTCA 60.154 57.895 0.00 0.00 0.00 3.27
492 499 1.880340 CCAGCAGCGACCGATTCTC 60.880 63.158 0.00 0.00 0.00 2.87
493 500 2.185350 CCAGCAGCGACCGATTCT 59.815 61.111 0.00 0.00 0.00 2.40
494 501 2.125512 ACCAGCAGCGACCGATTC 60.126 61.111 0.00 0.00 0.00 2.52
495 502 2.434884 CACCAGCAGCGACCGATT 60.435 61.111 0.00 0.00 0.00 3.34
509 516 0.657840 GATTCATACGTGGCAGCACC 59.342 55.000 0.00 0.00 39.84 5.01
510 517 0.301687 CGATTCATACGTGGCAGCAC 59.698 55.000 0.00 0.00 0.00 4.40
511 518 0.108377 ACGATTCATACGTGGCAGCA 60.108 50.000 0.00 0.00 42.37 4.41
512 519 1.004927 GAACGATTCATACGTGGCAGC 60.005 52.381 0.00 0.00 43.16 5.25
513 520 2.267426 TGAACGATTCATACGTGGCAG 58.733 47.619 0.00 0.00 43.16 4.85
514 521 2.371910 TGAACGATTCATACGTGGCA 57.628 45.000 0.00 0.00 43.16 4.92
523 530 0.657312 GCCGATGCATGAACGATTCA 59.343 50.000 2.46 0.00 45.01 2.57
524 531 0.040958 GGCCGATGCATGAACGATTC 60.041 55.000 2.46 0.00 40.13 2.52
525 532 1.775039 CGGCCGATGCATGAACGATT 61.775 55.000 24.07 0.00 40.13 3.34
526 533 2.246739 CGGCCGATGCATGAACGAT 61.247 57.895 24.07 0.00 40.13 3.73
527 534 2.889988 CGGCCGATGCATGAACGA 60.890 61.111 24.07 0.00 40.13 3.85
528 535 3.195002 ACGGCCGATGCATGAACG 61.195 61.111 35.90 6.01 40.13 3.95
529 536 2.404789 CACGGCCGATGCATGAAC 59.595 61.111 35.90 0.00 40.13 3.18
530 537 3.507924 GCACGGCCGATGCATGAA 61.508 61.111 33.23 0.00 42.88 2.57
542 549 0.941463 GATAGACGATGCCTGCACGG 60.941 60.000 14.98 0.00 0.00 4.94
543 550 0.941463 GGATAGACGATGCCTGCACG 60.941 60.000 10.88 10.88 0.00 5.34
544 551 0.390860 AGGATAGACGATGCCTGCAC 59.609 55.000 0.00 0.00 0.00 4.57
545 552 0.676184 GAGGATAGACGATGCCTGCA 59.324 55.000 0.00 0.00 0.00 4.41
546 553 0.965439 AGAGGATAGACGATGCCTGC 59.035 55.000 0.00 0.00 0.00 4.85
547 554 2.487762 GAGAGAGGATAGACGATGCCTG 59.512 54.545 0.00 0.00 0.00 4.85
548 555 2.375174 AGAGAGAGGATAGACGATGCCT 59.625 50.000 0.00 0.00 0.00 4.75
549 556 2.747446 GAGAGAGAGGATAGACGATGCC 59.253 54.545 0.00 0.00 0.00 4.40
550 557 3.674997 AGAGAGAGAGGATAGACGATGC 58.325 50.000 0.00 0.00 0.00 3.91
551 558 5.152623 AGAGAGAGAGAGGATAGACGATG 57.847 47.826 0.00 0.00 0.00 3.84
552 559 4.838423 TGAGAGAGAGAGAGGATAGACGAT 59.162 45.833 0.00 0.00 0.00 3.73
553 560 4.219919 TGAGAGAGAGAGAGGATAGACGA 58.780 47.826 0.00 0.00 0.00 4.20
554 561 4.600692 TGAGAGAGAGAGAGGATAGACG 57.399 50.000 0.00 0.00 0.00 4.18
555 562 6.119536 TGTTTGAGAGAGAGAGAGGATAGAC 58.880 44.000 0.00 0.00 0.00 2.59
556 563 6.320434 TGTTTGAGAGAGAGAGAGGATAGA 57.680 41.667 0.00 0.00 0.00 1.98
557 564 7.520453 CGAATGTTTGAGAGAGAGAGAGGATAG 60.520 44.444 0.00 0.00 0.00 2.08
558 565 6.262049 CGAATGTTTGAGAGAGAGAGAGGATA 59.738 42.308 0.00 0.00 0.00 2.59
559 566 5.067674 CGAATGTTTGAGAGAGAGAGAGGAT 59.932 44.000 0.00 0.00 0.00 3.24
560 567 4.397730 CGAATGTTTGAGAGAGAGAGAGGA 59.602 45.833 0.00 0.00 0.00 3.71
561 568 4.157656 ACGAATGTTTGAGAGAGAGAGAGG 59.842 45.833 0.00 0.00 0.00 3.69
562 569 5.309323 ACGAATGTTTGAGAGAGAGAGAG 57.691 43.478 0.00 0.00 0.00 3.20
563 570 4.156922 GGACGAATGTTTGAGAGAGAGAGA 59.843 45.833 0.00 0.00 0.00 3.10
564 571 4.420168 GGACGAATGTTTGAGAGAGAGAG 58.580 47.826 0.00 0.00 0.00 3.20
565 572 3.193691 GGGACGAATGTTTGAGAGAGAGA 59.806 47.826 0.00 0.00 0.00 3.10
583 590 2.991540 GCTTTGTGGGGCTGGGAC 60.992 66.667 0.00 0.00 0.00 4.46
706 713 4.164988 AGAGAGAAAGAGAGAGAGAGGAGG 59.835 50.000 0.00 0.00 0.00 4.30
707 714 5.130145 AGAGAGAGAAAGAGAGAGAGAGGAG 59.870 48.000 0.00 0.00 0.00 3.69
708 715 5.032846 AGAGAGAGAAAGAGAGAGAGAGGA 58.967 45.833 0.00 0.00 0.00 3.71
709 716 5.130145 AGAGAGAGAGAAAGAGAGAGAGAGG 59.870 48.000 0.00 0.00 0.00 3.69
710 717 6.098124 AGAGAGAGAGAGAAAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
711 718 5.960811 AGAGAGAGAGAGAAAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
712 719 6.098124 AGAGAGAGAGAGAGAAAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
713 720 5.960811 AGAGAGAGAGAGAGAAAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
714 721 6.098124 AGAGAGAGAGAGAGAGAAAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
715 722 5.960811 AGAGAGAGAGAGAGAGAAAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
716 723 6.098124 AGAGAGAGAGAGAGAGAGAAAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
717 724 5.960811 AGAGAGAGAGAGAGAGAGAAAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
718 725 6.098124 AGAGAGAGAGAGAGAGAGAGAAAGAG 59.902 46.154 0.00 0.00 0.00 2.85
719 726 5.960811 AGAGAGAGAGAGAGAGAGAGAAAGA 59.039 44.000 0.00 0.00 0.00 2.52
720 727 6.098124 AGAGAGAGAGAGAGAGAGAGAGAAAG 59.902 46.154 0.00 0.00 0.00 2.62
721 728 5.960811 AGAGAGAGAGAGAGAGAGAGAGAAA 59.039 44.000 0.00 0.00 0.00 2.52
722 729 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
723 730 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
724 731 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
725 732 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
726 733 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
727 734 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
728 735 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
729 736 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
730 737 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
731 738 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
732 739 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
733 740 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
734 741 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
735 742 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
962 971 5.544176 TGTGGTGGATATATTTCCTCTCTCC 59.456 44.000 12.72 8.19 36.68 3.71
1134 1151 3.584406 TCTCTTTCCATGAAGAAGCTGGA 59.416 43.478 0.00 0.00 35.38 3.86
1162 1179 7.429636 TCACGCTAAGCTACTTTAATTTTGT 57.570 32.000 0.00 0.00 0.00 2.83
1226 1243 4.030216 AGATCAGGAGAAGAAAGGAGGAC 58.970 47.826 0.00 0.00 0.00 3.85
1692 1709 3.679389 TGAAGAAGAAGATGGCTTGGAC 58.321 45.455 0.00 0.00 33.61 4.02
2455 2491 8.540388 ACTAGTACCTGATGAAGAATTAAAGCA 58.460 33.333 0.00 0.00 0.00 3.91
2568 2620 0.886563 ACGTACTACACAGGCAGACC 59.113 55.000 0.00 0.00 0.00 3.85
2570 2622 1.538512 GACACGTACTACACAGGCAGA 59.461 52.381 0.00 0.00 0.00 4.26
2571 2623 1.402456 GGACACGTACTACACAGGCAG 60.402 57.143 0.00 0.00 0.00 4.85
2572 2624 0.599558 GGACACGTACTACACAGGCA 59.400 55.000 0.00 0.00 0.00 4.75
2573 2625 0.599558 TGGACACGTACTACACAGGC 59.400 55.000 0.00 0.00 0.00 4.85
2574 2626 3.250744 CAATGGACACGTACTACACAGG 58.749 50.000 0.00 0.00 0.00 4.00
2576 2628 3.068448 ACACAATGGACACGTACTACACA 59.932 43.478 0.00 0.00 0.00 3.72
2577 2629 3.645884 ACACAATGGACACGTACTACAC 58.354 45.455 0.00 0.00 0.00 2.90
2838 2909 8.708742 CGTGATCAGTGAAAACTCTACAAATTA 58.291 33.333 0.00 0.00 0.00 1.40
2839 2910 7.226720 ACGTGATCAGTGAAAACTCTACAAATT 59.773 33.333 0.00 0.00 0.00 1.82
2840 2911 6.706270 ACGTGATCAGTGAAAACTCTACAAAT 59.294 34.615 0.00 0.00 0.00 2.32
2841 2912 6.046593 ACGTGATCAGTGAAAACTCTACAAA 58.953 36.000 0.00 0.00 0.00 2.83
2842 2913 5.597806 ACGTGATCAGTGAAAACTCTACAA 58.402 37.500 0.00 0.00 0.00 2.41
3040 3111 4.911522 AGAGATTTGGAACCGGGGAATATA 59.088 41.667 6.32 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.