Multiple sequence alignment - TraesCS4D01G206600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G206600 chr4D 100.000 4106 0 0 1 4106 354135050 354139155 0.000000e+00 7583.0
1 TraesCS4D01G206600 chr4D 92.715 302 19 3 1 299 357355684 357355383 2.270000e-117 433.0
2 TraesCS4D01G206600 chr4A 93.543 3299 149 36 567 3821 110639632 110636354 0.000000e+00 4854.0
3 TraesCS4D01G206600 chr4A 94.089 203 11 1 1030 1232 109423756 109423957 1.430000e-79 307.0
4 TraesCS4D01G206600 chr4A 94.495 109 6 0 375 483 110641051 110640943 7.060000e-38 169.0
5 TraesCS4D01G206600 chr4A 94.643 56 3 0 520 575 110640945 110640890 2.030000e-13 87.9
6 TraesCS4D01G206600 chr4B 94.995 2997 96 22 372 3327 437948448 437951431 0.000000e+00 4654.0
7 TraesCS4D01G206600 chr3A 87.493 1703 199 13 1355 3051 606436003 606434309 0.000000e+00 1953.0
8 TraesCS4D01G206600 chr3A 91.150 226 18 2 1028 1252 606436731 606436507 5.160000e-79 305.0
9 TraesCS4D01G206600 chr3D 87.831 1660 198 4 1354 3011 462851024 462852681 0.000000e+00 1943.0
10 TraesCS4D01G206600 chr3D 87.771 1660 198 5 1354 3010 463191626 463189969 0.000000e+00 1936.0
11 TraesCS4D01G206600 chr3D 95.053 283 13 1 1 282 322188175 322187893 1.050000e-120 444.0
12 TraesCS4D01G206600 chr3D 90.393 229 20 2 1025 1252 462850061 462850288 2.400000e-77 300.0
13 TraesCS4D01G206600 chr3D 90.708 226 19 2 1028 1252 463192586 463192362 2.400000e-77 300.0
14 TraesCS4D01G206600 chr3B 87.650 1668 198 8 1347 3010 616310986 616309323 0.000000e+00 1932.0
15 TraesCS4D01G206600 chr3B 87.643 1659 200 5 1355 3010 615749754 615751410 0.000000e+00 1923.0
16 TraesCS4D01G206600 chr3B 90.708 226 19 2 1028 1252 616311738 616311514 2.400000e-77 300.0
17 TraesCS4D01G206600 chr1A 86.898 1702 215 6 1354 3048 482337731 482336031 0.000000e+00 1901.0
18 TraesCS4D01G206600 chr1B 86.570 1720 219 10 1354 3064 512174642 512172926 0.000000e+00 1886.0
19 TraesCS4D01G206600 chr1B 92.823 209 15 0 1021 1229 512175825 512175617 1.850000e-78 303.0
20 TraesCS4D01G206600 chr5D 95.760 283 11 1 1 282 238911859 238911577 4.840000e-124 455.0
21 TraesCS4D01G206600 chr1D 95.139 288 13 1 1 287 236775238 236775525 1.740000e-123 453.0
22 TraesCS4D01G206600 chr1D 94.118 289 15 2 1 287 462342755 462343043 4.870000e-119 438.0
23 TraesCS4D01G206600 chr1D 92.823 209 15 0 1021 1229 382237635 382237427 1.850000e-78 303.0
24 TraesCS4D01G206600 chr1D 100.000 28 0 0 3347 3374 32445060 32445033 7.000000e-03 52.8
25 TraesCS4D01G206600 chr2D 94.792 288 14 1 1 287 347294782 347295069 8.100000e-122 448.0
26 TraesCS4D01G206600 chr2D 95.070 284 13 1 1 283 172161818 172162101 2.910000e-121 446.0
27 TraesCS4D01G206600 chr2D 94.444 288 15 1 1 287 298207057 298207344 3.770000e-120 442.0
28 TraesCS4D01G206600 chr6D 95.070 284 13 1 1 283 315001232 315000949 2.910000e-121 446.0
29 TraesCS4D01G206600 chr2B 76.101 159 24 11 3936 4086 693361835 693361683 2.050000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G206600 chr4D 354135050 354139155 4105 False 7583.000000 7583 100.0000 1 4106 1 chr4D.!!$F1 4105
1 TraesCS4D01G206600 chr4A 110636354 110641051 4697 True 1703.633333 4854 94.2270 375 3821 3 chr4A.!!$R1 3446
2 TraesCS4D01G206600 chr4B 437948448 437951431 2983 False 4654.000000 4654 94.9950 372 3327 1 chr4B.!!$F1 2955
3 TraesCS4D01G206600 chr3A 606434309 606436731 2422 True 1129.000000 1953 89.3215 1028 3051 2 chr3A.!!$R1 2023
4 TraesCS4D01G206600 chr3D 462850061 462852681 2620 False 1121.500000 1943 89.1120 1025 3011 2 chr3D.!!$F1 1986
5 TraesCS4D01G206600 chr3D 463189969 463192586 2617 True 1118.000000 1936 89.2395 1028 3010 2 chr3D.!!$R2 1982
6 TraesCS4D01G206600 chr3B 615749754 615751410 1656 False 1923.000000 1923 87.6430 1355 3010 1 chr3B.!!$F1 1655
7 TraesCS4D01G206600 chr3B 616309323 616311738 2415 True 1116.000000 1932 89.1790 1028 3010 2 chr3B.!!$R1 1982
8 TraesCS4D01G206600 chr1A 482336031 482337731 1700 True 1901.000000 1901 86.8980 1354 3048 1 chr1A.!!$R1 1694
9 TraesCS4D01G206600 chr1B 512172926 512175825 2899 True 1094.500000 1886 89.6965 1021 3064 2 chr1B.!!$R1 2043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.033011 GACTAGGCCACTCCTGAGGA 60.033 60.000 5.01 0.0 46.98 3.71 F
285 286 0.174845 TCCCAGAACGCCGACAATAG 59.825 55.000 0.00 0.0 0.00 1.73 F
368 369 0.242017 GCAACTGCTTGCCCTGTAAG 59.758 55.000 0.00 0.0 46.27 2.34 F
601 1868 0.323629 TCCTAAACTCGCCACTTGGG 59.676 55.000 0.00 0.0 40.85 4.12 F
715 1994 1.295423 CACGAAACCTGGGACCGAT 59.705 57.895 10.05 0.0 0.00 4.18 F
935 2218 1.374125 CACATCCACCGAGCGAACA 60.374 57.895 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 3910 0.833949 CTTCTCCTCCCCCTTGTAGC 59.166 60.000 0.00 0.00 0.00 3.58 R
1599 4037 1.711206 GCTGGGAGTCGTTGAAGTAC 58.289 55.000 0.00 0.00 0.00 2.73 R
1653 4091 2.003196 TTATGCGCATGACGTTGAGA 57.997 45.000 32.48 6.36 46.11 3.27 R
2448 4887 0.320697 GCTGGTTGTCCGAGTAGGTT 59.679 55.000 0.00 0.00 41.99 3.50 R
2574 5014 2.291043 GGTCACCGTGATCTGGGGT 61.291 63.158 4.13 2.47 33.37 4.95 R
3134 5584 0.381801 CCACAGGCAACAGAACACAC 59.618 55.000 0.00 0.00 41.41 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.468540 AGCACCAAAAAGGAAATAAGGAC 57.531 39.130 0.00 0.00 41.22 3.85
23 24 4.022329 AGCACCAAAAAGGAAATAAGGACG 60.022 41.667 0.00 0.00 41.22 4.79
24 25 4.261867 GCACCAAAAAGGAAATAAGGACGT 60.262 41.667 0.00 0.00 41.22 4.34
25 26 5.737922 GCACCAAAAAGGAAATAAGGACGTT 60.738 40.000 0.00 0.00 41.22 3.99
26 27 5.689961 CACCAAAAAGGAAATAAGGACGTTG 59.310 40.000 0.00 0.00 41.22 4.10
27 28 4.684242 CCAAAAAGGAAATAAGGACGTTGC 59.316 41.667 0.00 0.00 41.22 4.17
28 29 3.824414 AAAGGAAATAAGGACGTTGCG 57.176 42.857 0.00 0.00 0.00 4.85
29 30 1.084289 AGGAAATAAGGACGTTGCGC 58.916 50.000 0.00 0.00 0.00 6.09
31 32 0.856080 GAAATAAGGACGTTGCGCGC 60.856 55.000 27.26 27.26 46.11 6.86
32 33 2.557265 AAATAAGGACGTTGCGCGCG 62.557 55.000 28.44 28.44 46.11 6.86
56 57 4.873129 CCCGCCTGGTGTCGATCG 62.873 72.222 9.36 9.36 0.00 3.69
57 58 4.129737 CCGCCTGGTGTCGATCGT 62.130 66.667 15.94 0.00 0.00 3.73
58 59 2.579787 CGCCTGGTGTCGATCGTC 60.580 66.667 15.94 10.48 0.00 4.20
59 60 2.571757 GCCTGGTGTCGATCGTCA 59.428 61.111 15.94 13.37 0.00 4.35
60 61 1.141881 GCCTGGTGTCGATCGTCAT 59.858 57.895 17.63 0.00 0.00 3.06
61 62 1.148157 GCCTGGTGTCGATCGTCATG 61.148 60.000 17.63 10.95 0.00 3.07
62 63 0.528466 CCTGGTGTCGATCGTCATGG 60.528 60.000 17.63 15.27 0.00 3.66
63 64 1.148157 CTGGTGTCGATCGTCATGGC 61.148 60.000 17.63 5.72 0.00 4.40
64 65 1.141881 GGTGTCGATCGTCATGGCT 59.858 57.895 17.63 0.00 0.00 4.75
65 66 0.872021 GGTGTCGATCGTCATGGCTC 60.872 60.000 17.63 5.03 0.00 4.70
66 67 0.179137 GTGTCGATCGTCATGGCTCA 60.179 55.000 17.63 2.54 0.00 4.26
67 68 0.179137 TGTCGATCGTCATGGCTCAC 60.179 55.000 15.94 2.87 0.00 3.51
68 69 1.064134 TCGATCGTCATGGCTCACG 59.936 57.895 15.94 0.00 37.36 4.35
69 70 1.226688 CGATCGTCATGGCTCACGT 60.227 57.895 7.03 0.00 37.30 4.49
70 71 1.202973 CGATCGTCATGGCTCACGTC 61.203 60.000 7.03 0.00 37.30 4.34
71 72 0.179137 GATCGTCATGGCTCACGTCA 60.179 55.000 0.00 0.00 37.30 4.35
72 73 0.458543 ATCGTCATGGCTCACGTCAC 60.459 55.000 0.00 0.00 37.30 3.67
73 74 2.436539 CGTCATGGCTCACGTCACG 61.437 63.158 0.00 0.00 0.00 4.35
74 75 1.080772 GTCATGGCTCACGTCACGA 60.081 57.895 2.91 0.00 0.00 4.35
75 76 1.073216 GTCATGGCTCACGTCACGAG 61.073 60.000 2.91 0.00 0.00 4.18
76 77 1.212751 CATGGCTCACGTCACGAGA 59.787 57.895 2.91 0.00 31.84 4.04
77 78 0.799917 CATGGCTCACGTCACGAGAG 60.800 60.000 19.12 19.12 44.73 3.20
80 81 3.268986 CTCACGTCACGAGAGCCT 58.731 61.111 11.84 0.00 37.69 4.58
81 82 1.135731 CTCACGTCACGAGAGCCTC 59.864 63.158 11.84 0.00 37.69 4.70
95 96 2.359975 CCTCGTGAGGTTTGCCCC 60.360 66.667 7.79 0.00 43.61 5.80
96 97 2.742372 CTCGTGAGGTTTGCCCCG 60.742 66.667 0.00 0.00 34.57 5.73
99 100 4.660938 GTGAGGTTTGCCCCGCCT 62.661 66.667 0.00 0.00 34.57 5.52
100 101 3.897122 TGAGGTTTGCCCCGCCTT 61.897 61.111 0.00 0.00 34.57 4.35
101 102 3.373565 GAGGTTTGCCCCGCCTTG 61.374 66.667 0.00 0.00 34.57 3.61
102 103 3.860930 GAGGTTTGCCCCGCCTTGA 62.861 63.158 0.00 0.00 34.57 3.02
103 104 2.679996 GGTTTGCCCCGCCTTGAT 60.680 61.111 0.00 0.00 0.00 2.57
104 105 1.379309 GGTTTGCCCCGCCTTGATA 60.379 57.895 0.00 0.00 0.00 2.15
105 106 0.755327 GGTTTGCCCCGCCTTGATAT 60.755 55.000 0.00 0.00 0.00 1.63
106 107 0.668535 GTTTGCCCCGCCTTGATATC 59.331 55.000 0.00 0.00 0.00 1.63
107 108 0.550914 TTTGCCCCGCCTTGATATCT 59.449 50.000 3.98 0.00 0.00 1.98
108 109 0.108585 TTGCCCCGCCTTGATATCTC 59.891 55.000 3.98 0.00 0.00 2.75
109 110 1.003233 GCCCCGCCTTGATATCTCC 60.003 63.158 3.98 0.00 0.00 3.71
110 111 1.293498 CCCCGCCTTGATATCTCCG 59.707 63.158 3.98 1.70 0.00 4.63
111 112 1.374758 CCCGCCTTGATATCTCCGC 60.375 63.158 3.98 1.72 0.00 5.54
112 113 1.668294 CCGCCTTGATATCTCCGCT 59.332 57.895 3.98 0.00 0.00 5.52
113 114 0.389166 CCGCCTTGATATCTCCGCTC 60.389 60.000 3.98 0.00 0.00 5.03
114 115 0.389166 CGCCTTGATATCTCCGCTCC 60.389 60.000 3.98 0.00 0.00 4.70
115 116 0.972883 GCCTTGATATCTCCGCTCCT 59.027 55.000 3.98 0.00 0.00 3.69
116 117 1.067213 GCCTTGATATCTCCGCTCCTC 60.067 57.143 3.98 0.00 0.00 3.71
117 118 1.201181 CCTTGATATCTCCGCTCCTCG 59.799 57.143 3.98 0.00 38.08 4.63
118 119 1.883275 CTTGATATCTCCGCTCCTCGT 59.117 52.381 3.98 0.00 36.19 4.18
119 120 1.239347 TGATATCTCCGCTCCTCGTG 58.761 55.000 3.98 0.00 36.19 4.35
120 121 1.202770 TGATATCTCCGCTCCTCGTGA 60.203 52.381 3.98 0.00 36.19 4.35
121 122 1.466950 GATATCTCCGCTCCTCGTGAG 59.533 57.143 0.00 1.12 44.47 3.51
128 129 3.073735 CTCCTCGTGAGCCTGCCT 61.074 66.667 0.00 0.00 33.47 4.75
129 130 3.368190 CTCCTCGTGAGCCTGCCTG 62.368 68.421 0.00 0.00 33.47 4.85
130 131 3.385384 CCTCGTGAGCCTGCCTGA 61.385 66.667 0.00 0.00 0.00 3.86
131 132 2.125753 CTCGTGAGCCTGCCTGAC 60.126 66.667 0.00 0.00 0.00 3.51
132 133 2.601666 TCGTGAGCCTGCCTGACT 60.602 61.111 0.00 0.00 0.00 3.41
133 134 1.304134 TCGTGAGCCTGCCTGACTA 60.304 57.895 0.00 0.00 0.00 2.59
134 135 1.140589 CGTGAGCCTGCCTGACTAG 59.859 63.158 0.00 0.00 0.00 2.57
144 145 2.206635 CCTGACTAGGCCACTCCTG 58.793 63.158 5.01 0.00 46.98 3.86
145 146 0.324738 CCTGACTAGGCCACTCCTGA 60.325 60.000 5.01 0.00 46.98 3.86
146 147 1.110442 CTGACTAGGCCACTCCTGAG 58.890 60.000 5.01 0.00 46.98 3.35
147 148 0.324738 TGACTAGGCCACTCCTGAGG 60.325 60.000 5.01 0.00 46.98 3.86
148 149 0.033011 GACTAGGCCACTCCTGAGGA 60.033 60.000 5.01 0.00 46.98 3.71
157 158 1.515020 CTCCTGAGGAGGTCTTGCG 59.485 63.158 20.90 0.00 45.43 4.85
158 159 1.228894 TCCTGAGGAGGTCTTGCGT 60.229 57.895 0.00 0.00 40.76 5.24
159 160 1.216710 CCTGAGGAGGTCTTGCGTC 59.783 63.158 0.00 0.00 34.16 5.19
160 161 1.153939 CTGAGGAGGTCTTGCGTCG 60.154 63.158 0.00 0.00 33.10 5.12
161 162 1.867919 CTGAGGAGGTCTTGCGTCGT 61.868 60.000 0.00 0.00 33.10 4.34
162 163 1.153997 GAGGAGGTCTTGCGTCGTC 60.154 63.158 0.00 0.00 38.90 4.20
163 164 2.126031 GGAGGTCTTGCGTCGTCC 60.126 66.667 0.00 0.00 33.10 4.79
164 165 2.126031 GAGGTCTTGCGTCGTCCC 60.126 66.667 0.00 0.00 0.00 4.46
165 166 3.644399 GAGGTCTTGCGTCGTCCCC 62.644 68.421 0.00 0.00 0.00 4.81
166 167 3.692406 GGTCTTGCGTCGTCCCCT 61.692 66.667 0.00 0.00 0.00 4.79
167 168 2.126031 GTCTTGCGTCGTCCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
168 169 3.744719 TCTTGCGTCGTCCCCTCG 61.745 66.667 0.00 0.00 0.00 4.63
181 182 3.068691 CCTCGCGAGGGTCTTGGA 61.069 66.667 41.47 1.44 44.87 3.53
182 183 2.427245 CCTCGCGAGGGTCTTGGAT 61.427 63.158 41.47 0.00 44.87 3.41
183 184 1.227089 CTCGCGAGGGTCTTGGATG 60.227 63.158 28.40 0.00 0.00 3.51
184 185 2.892425 CGCGAGGGTCTTGGATGC 60.892 66.667 0.00 0.00 0.00 3.91
185 186 2.514824 GCGAGGGTCTTGGATGCC 60.515 66.667 0.00 0.00 0.00 4.40
186 187 3.036429 GCGAGGGTCTTGGATGCCT 62.036 63.158 0.00 0.00 0.00 4.75
187 188 1.604378 CGAGGGTCTTGGATGCCTT 59.396 57.895 0.00 0.00 0.00 4.35
188 189 0.745845 CGAGGGTCTTGGATGCCTTG 60.746 60.000 0.00 0.00 0.00 3.61
189 190 0.329596 GAGGGTCTTGGATGCCTTGT 59.670 55.000 0.00 0.00 0.00 3.16
190 191 0.779997 AGGGTCTTGGATGCCTTGTT 59.220 50.000 0.00 0.00 0.00 2.83
191 192 0.890683 GGGTCTTGGATGCCTTGTTG 59.109 55.000 0.00 0.00 0.00 3.33
192 193 1.547675 GGGTCTTGGATGCCTTGTTGA 60.548 52.381 0.00 0.00 0.00 3.18
193 194 2.450476 GGTCTTGGATGCCTTGTTGAT 58.550 47.619 0.00 0.00 0.00 2.57
194 195 2.165030 GGTCTTGGATGCCTTGTTGATG 59.835 50.000 0.00 0.00 0.00 3.07
195 196 3.084039 GTCTTGGATGCCTTGTTGATGA 58.916 45.455 0.00 0.00 0.00 2.92
196 197 3.507233 GTCTTGGATGCCTTGTTGATGAA 59.493 43.478 0.00 0.00 0.00 2.57
197 198 3.760151 TCTTGGATGCCTTGTTGATGAAG 59.240 43.478 0.00 0.00 0.00 3.02
198 199 3.438216 TGGATGCCTTGTTGATGAAGA 57.562 42.857 0.00 0.00 0.00 2.87
199 200 3.972133 TGGATGCCTTGTTGATGAAGAT 58.028 40.909 0.00 0.00 0.00 2.40
200 201 3.697542 TGGATGCCTTGTTGATGAAGATG 59.302 43.478 0.00 0.00 0.00 2.90
201 202 3.067742 GGATGCCTTGTTGATGAAGATGG 59.932 47.826 0.00 0.00 0.00 3.51
202 203 2.449464 TGCCTTGTTGATGAAGATGGG 58.551 47.619 0.00 0.00 0.00 4.00
203 204 2.225091 TGCCTTGTTGATGAAGATGGGT 60.225 45.455 0.00 0.00 0.00 4.51
204 205 2.424956 GCCTTGTTGATGAAGATGGGTC 59.575 50.000 0.00 0.00 0.00 4.46
205 206 2.679837 CCTTGTTGATGAAGATGGGTCG 59.320 50.000 0.00 0.00 0.00 4.79
206 207 3.338249 CTTGTTGATGAAGATGGGTCGT 58.662 45.455 0.00 0.00 0.00 4.34
207 208 4.503910 CTTGTTGATGAAGATGGGTCGTA 58.496 43.478 0.00 0.00 0.00 3.43
208 209 3.857052 TGTTGATGAAGATGGGTCGTAC 58.143 45.455 0.00 0.00 0.00 3.67
209 210 2.858344 GTTGATGAAGATGGGTCGTACG 59.142 50.000 9.53 9.53 0.00 3.67
210 211 2.371306 TGATGAAGATGGGTCGTACGA 58.629 47.619 15.28 15.28 0.00 3.43
211 212 2.098607 TGATGAAGATGGGTCGTACGAC 59.901 50.000 34.70 34.70 43.87 4.34
219 220 2.506438 GTCGTACGACCTGCTGGC 60.506 66.667 33.07 9.66 39.08 4.85
220 221 2.675423 TCGTACGACCTGCTGGCT 60.675 61.111 15.28 0.00 36.63 4.75
221 222 2.261671 CGTACGACCTGCTGGCTT 59.738 61.111 10.44 0.00 36.63 4.35
222 223 0.961857 TCGTACGACCTGCTGGCTTA 60.962 55.000 15.28 0.00 36.63 3.09
223 224 0.525668 CGTACGACCTGCTGGCTTAG 60.526 60.000 10.44 1.34 36.63 2.18
253 254 2.433446 CCACAGGCAGGCAAGTCT 59.567 61.111 0.00 0.00 0.00 3.24
254 255 1.970114 CCACAGGCAGGCAAGTCTG 60.970 63.158 9.60 9.60 46.41 3.51
255 256 1.970114 CACAGGCAGGCAAGTCTGG 60.970 63.158 14.61 2.24 45.30 3.86
256 257 2.149383 ACAGGCAGGCAAGTCTGGA 61.149 57.895 14.61 0.00 45.30 3.86
257 258 1.376942 CAGGCAGGCAAGTCTGGAG 60.377 63.158 3.62 0.00 37.58 3.86
258 259 1.537397 AGGCAGGCAAGTCTGGAGA 60.537 57.895 3.62 0.00 35.43 3.71
259 260 1.376553 GGCAGGCAAGTCTGGAGAC 60.377 63.158 3.62 0.00 45.08 3.36
260 261 1.376553 GCAGGCAAGTCTGGAGACC 60.377 63.158 3.62 0.00 45.85 3.85
261 262 1.298014 CAGGCAAGTCTGGAGACCC 59.702 63.158 3.08 0.00 45.85 4.46
262 263 1.920835 AGGCAAGTCTGGAGACCCC 60.921 63.158 3.08 2.55 45.85 4.95
263 264 1.920835 GGCAAGTCTGGAGACCCCT 60.921 63.158 3.08 0.00 45.85 4.79
264 265 1.298014 GCAAGTCTGGAGACCCCTG 59.702 63.158 3.08 0.89 45.85 4.45
265 266 1.484444 GCAAGTCTGGAGACCCCTGT 61.484 60.000 3.08 0.00 45.85 4.00
266 267 1.059913 CAAGTCTGGAGACCCCTGTT 58.940 55.000 3.08 0.00 45.85 3.16
267 268 1.002544 CAAGTCTGGAGACCCCTGTTC 59.997 57.143 3.08 0.00 45.85 3.18
268 269 0.545548 AGTCTGGAGACCCCTGTTCC 60.546 60.000 3.08 0.00 45.85 3.62
269 270 1.229529 TCTGGAGACCCCTGTTCCC 60.230 63.158 0.00 0.00 35.57 3.97
270 271 1.538876 CTGGAGACCCCTGTTCCCA 60.539 63.158 0.00 0.00 35.38 4.37
271 272 1.538876 TGGAGACCCCTGTTCCCAG 60.539 63.158 0.00 0.00 38.50 4.45
272 273 1.229529 GGAGACCCCTGTTCCCAGA 60.230 63.158 0.00 0.00 41.50 3.86
273 274 0.840722 GGAGACCCCTGTTCCCAGAA 60.841 60.000 0.00 0.00 41.50 3.02
274 275 0.325272 GAGACCCCTGTTCCCAGAAC 59.675 60.000 0.47 0.47 41.50 3.01
275 276 1.003718 GACCCCTGTTCCCAGAACG 60.004 63.158 3.25 0.00 41.50 3.95
276 277 2.359975 CCCCTGTTCCCAGAACGC 60.360 66.667 3.25 0.00 41.50 4.84
277 278 2.359975 CCCTGTTCCCAGAACGCC 60.360 66.667 3.25 0.00 41.50 5.68
278 279 2.742372 CCTGTTCCCAGAACGCCG 60.742 66.667 3.25 0.00 41.50 6.46
279 280 2.342279 CTGTTCCCAGAACGCCGA 59.658 61.111 0.00 0.00 41.50 5.54
280 281 2.027625 CTGTTCCCAGAACGCCGAC 61.028 63.158 0.00 0.00 41.50 4.79
281 282 2.029964 GTTCCCAGAACGCCGACA 59.970 61.111 0.00 0.00 0.00 4.35
282 283 1.595929 GTTCCCAGAACGCCGACAA 60.596 57.895 0.00 0.00 0.00 3.18
283 284 0.953960 GTTCCCAGAACGCCGACAAT 60.954 55.000 0.00 0.00 0.00 2.71
284 285 0.609151 TTCCCAGAACGCCGACAATA 59.391 50.000 0.00 0.00 0.00 1.90
285 286 0.174845 TCCCAGAACGCCGACAATAG 59.825 55.000 0.00 0.00 0.00 1.73
286 287 1.429148 CCCAGAACGCCGACAATAGC 61.429 60.000 0.00 0.00 0.00 2.97
297 298 5.779806 GCCGACAATAGCGTATATGAATT 57.220 39.130 0.00 0.00 0.00 2.17
298 299 6.880822 GCCGACAATAGCGTATATGAATTA 57.119 37.500 0.00 0.00 0.00 1.40
299 300 6.693342 GCCGACAATAGCGTATATGAATTAC 58.307 40.000 0.00 0.00 0.00 1.89
300 301 6.237755 GCCGACAATAGCGTATATGAATTACC 60.238 42.308 0.00 0.00 0.00 2.85
301 302 6.809689 CCGACAATAGCGTATATGAATTACCA 59.190 38.462 0.00 0.00 0.00 3.25
302 303 7.009265 CCGACAATAGCGTATATGAATTACCAG 59.991 40.741 0.00 0.00 0.00 4.00
303 304 7.541091 CGACAATAGCGTATATGAATTACCAGT 59.459 37.037 0.00 0.00 0.00 4.00
304 305 8.534333 ACAATAGCGTATATGAATTACCAGTG 57.466 34.615 0.00 0.00 0.00 3.66
305 306 7.117812 ACAATAGCGTATATGAATTACCAGTGC 59.882 37.037 0.00 0.00 0.00 4.40
306 307 5.215252 AGCGTATATGAATTACCAGTGCT 57.785 39.130 0.00 0.00 0.00 4.40
307 308 5.611374 AGCGTATATGAATTACCAGTGCTT 58.389 37.500 0.00 0.00 0.00 3.91
308 309 5.696724 AGCGTATATGAATTACCAGTGCTTC 59.303 40.000 0.00 0.00 0.00 3.86
309 310 5.696724 GCGTATATGAATTACCAGTGCTTCT 59.303 40.000 0.00 0.00 0.00 2.85
310 311 6.202954 GCGTATATGAATTACCAGTGCTTCTT 59.797 38.462 0.00 0.00 0.00 2.52
311 312 7.569591 GCGTATATGAATTACCAGTGCTTCTTC 60.570 40.741 0.00 0.00 0.00 2.87
312 313 7.438160 CGTATATGAATTACCAGTGCTTCTTCA 59.562 37.037 0.00 0.00 0.00 3.02
313 314 9.277783 GTATATGAATTACCAGTGCTTCTTCAT 57.722 33.333 11.47 11.47 36.27 2.57
314 315 5.885230 TGAATTACCAGTGCTTCTTCATG 57.115 39.130 0.00 0.00 0.00 3.07
315 316 5.559770 TGAATTACCAGTGCTTCTTCATGA 58.440 37.500 0.00 0.00 0.00 3.07
316 317 6.182627 TGAATTACCAGTGCTTCTTCATGAT 58.817 36.000 0.00 0.00 0.00 2.45
317 318 6.660521 TGAATTACCAGTGCTTCTTCATGATT 59.339 34.615 0.00 0.00 0.00 2.57
318 319 7.177216 TGAATTACCAGTGCTTCTTCATGATTT 59.823 33.333 0.00 0.00 0.00 2.17
319 320 6.899393 TTACCAGTGCTTCTTCATGATTTT 57.101 33.333 0.00 0.00 0.00 1.82
320 321 5.382618 ACCAGTGCTTCTTCATGATTTTC 57.617 39.130 0.00 0.00 0.00 2.29
321 322 4.219288 ACCAGTGCTTCTTCATGATTTTCC 59.781 41.667 0.00 0.00 0.00 3.13
322 323 4.219070 CCAGTGCTTCTTCATGATTTTCCA 59.781 41.667 0.00 0.00 0.00 3.53
323 324 5.399858 CAGTGCTTCTTCATGATTTTCCAG 58.600 41.667 0.00 0.00 0.00 3.86
324 325 5.048224 CAGTGCTTCTTCATGATTTTCCAGT 60.048 40.000 0.00 0.00 0.00 4.00
325 326 5.048224 AGTGCTTCTTCATGATTTTCCAGTG 60.048 40.000 0.00 0.00 0.00 3.66
326 327 4.171754 GCTTCTTCATGATTTTCCAGTGC 58.828 43.478 0.00 0.00 0.00 4.40
327 328 4.321452 GCTTCTTCATGATTTTCCAGTGCA 60.321 41.667 0.00 0.00 0.00 4.57
328 329 4.771590 TCTTCATGATTTTCCAGTGCAC 57.228 40.909 9.40 9.40 0.00 4.57
329 330 4.401022 TCTTCATGATTTTCCAGTGCACT 58.599 39.130 15.25 15.25 0.00 4.40
330 331 5.559770 TCTTCATGATTTTCCAGTGCACTA 58.440 37.500 21.20 3.40 0.00 2.74
331 332 6.003326 TCTTCATGATTTTCCAGTGCACTAA 58.997 36.000 21.20 10.88 0.00 2.24
332 333 6.660521 TCTTCATGATTTTCCAGTGCACTAAT 59.339 34.615 21.20 15.59 0.00 1.73
333 334 6.441093 TCATGATTTTCCAGTGCACTAATC 57.559 37.500 24.06 24.06 0.00 1.75
334 335 5.945191 TCATGATTTTCCAGTGCACTAATCA 59.055 36.000 30.65 30.65 33.99 2.57
335 336 5.627499 TGATTTTCCAGTGCACTAATCAC 57.373 39.130 27.40 14.87 28.05 3.06
336 337 4.154015 TGATTTTCCAGTGCACTAATCACG 59.846 41.667 27.40 13.70 39.31 4.35
337 338 2.093306 TTCCAGTGCACTAATCACGG 57.907 50.000 21.20 15.58 39.31 4.94
338 339 0.973632 TCCAGTGCACTAATCACGGT 59.026 50.000 21.20 0.00 39.31 4.83
339 340 1.078709 CCAGTGCACTAATCACGGTG 58.921 55.000 21.20 4.38 39.31 4.94
346 347 3.187478 CACTAATCACGGTGCAAACAG 57.813 47.619 2.51 0.00 0.00 3.16
347 348 2.805671 CACTAATCACGGTGCAAACAGA 59.194 45.455 2.51 0.00 0.00 3.41
348 349 3.436704 CACTAATCACGGTGCAAACAGAT 59.563 43.478 2.51 0.00 0.00 2.90
349 350 2.995466 AATCACGGTGCAAACAGATG 57.005 45.000 2.51 0.00 0.00 2.90
350 351 0.523072 ATCACGGTGCAAACAGATGC 59.477 50.000 2.51 0.00 46.58 3.91
357 358 3.879912 GCAAACAGATGCAACTGCT 57.120 47.368 22.56 9.02 45.70 4.24
358 359 2.144482 GCAAACAGATGCAACTGCTT 57.856 45.000 22.56 14.72 45.70 3.91
359 360 1.790623 GCAAACAGATGCAACTGCTTG 59.209 47.619 26.75 26.75 45.70 4.01
366 367 4.079446 GCAACTGCTTGCCCTGTA 57.921 55.556 0.00 0.00 46.27 2.74
367 368 2.340427 GCAACTGCTTGCCCTGTAA 58.660 52.632 0.00 0.00 46.27 2.41
368 369 0.242017 GCAACTGCTTGCCCTGTAAG 59.758 55.000 0.00 0.00 46.27 2.34
369 370 1.609208 CAACTGCTTGCCCTGTAAGT 58.391 50.000 0.00 0.00 0.00 2.24
370 371 1.267806 CAACTGCTTGCCCTGTAAGTG 59.732 52.381 0.00 0.00 0.00 3.16
378 379 2.347490 CCTGTAAGTGCGTGCCCT 59.653 61.111 0.00 0.00 0.00 5.19
522 523 5.109903 ACTGCGACAAATACTCCTGTAATC 58.890 41.667 0.00 0.00 31.80 1.75
601 1868 0.323629 TCCTAAACTCGCCACTTGGG 59.676 55.000 0.00 0.00 40.85 4.12
675 1948 1.374758 CCAGAGCGGACTCACCAAC 60.375 63.158 0.00 0.00 46.09 3.77
678 1951 2.847234 AGCGGACTCACCAACCCA 60.847 61.111 0.00 0.00 38.90 4.51
680 1953 2.258726 GCGGACTCACCAACCCAAC 61.259 63.158 0.00 0.00 38.90 3.77
715 1994 1.295423 CACGAAACCTGGGACCGAT 59.705 57.895 10.05 0.00 0.00 4.18
751 2030 2.887568 CTCTGGATGTGTCGCGCC 60.888 66.667 0.00 0.00 0.00 6.53
866 2149 2.779598 AACCCCACCCCCTTCGTT 60.780 61.111 0.00 0.00 0.00 3.85
935 2218 1.374125 CACATCCACCGAGCGAACA 60.374 57.895 0.00 0.00 0.00 3.18
1080 2363 2.436469 TACTCCTGCGTCGGCGTA 60.436 61.111 12.58 5.35 44.10 4.42
1322 2872 4.555906 GCCTTTTGCTCTGTTTTACGCTAA 60.556 41.667 0.00 0.00 36.87 3.09
1472 3910 1.660607 CAAACCGATGATCGTGGTCAG 59.339 52.381 14.27 0.00 38.40 3.51
2448 4887 2.301296 CAAGAAGGAGCAGGTCTTCTCA 59.699 50.000 12.08 0.00 46.13 3.27
3000 5440 2.642171 TCTCCAAGATGTACCAGGGT 57.358 50.000 0.00 0.00 0.00 4.34
3134 5584 1.187087 GACAGGTCCTGGAGTGGTAG 58.813 60.000 23.06 0.00 35.51 3.18
3161 5628 1.817941 GTTGCCTGTGGTCGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
3162 5629 1.817520 TTGCCTGTGGTCGTGTGTG 60.818 57.895 0.00 0.00 0.00 3.82
3163 5630 2.972505 GCCTGTGGTCGTGTGTGG 60.973 66.667 0.00 0.00 0.00 4.17
3285 5762 5.163992 CGACATACACATGTGGTTCTTGTAC 60.164 44.000 28.64 15.05 45.58 2.90
3286 5763 5.865085 ACATACACATGTGGTTCTTGTACT 58.135 37.500 28.64 7.12 43.89 2.73
3287 5764 6.999950 ACATACACATGTGGTTCTTGTACTA 58.000 36.000 28.64 9.10 43.89 1.82
3358 5844 5.010314 GTCCTTGATTACCGAAAAAGGGTTT 59.990 40.000 0.00 0.00 38.35 3.27
3359 5845 5.010213 TCCTTGATTACCGAAAAAGGGTTTG 59.990 40.000 0.00 0.00 38.35 2.93
3386 5872 6.964934 CCGCTTTATATTACCACAAACAGTTC 59.035 38.462 0.00 0.00 0.00 3.01
3389 5875 8.293867 GCTTTATATTACCACAAACAGTTCACA 58.706 33.333 0.00 0.00 0.00 3.58
3396 5882 8.608844 TTACCACAAACAGTTCACAAATTTTT 57.391 26.923 0.00 0.00 0.00 1.94
3397 5883 9.706691 TTACCACAAACAGTTCACAAATTTTTA 57.293 25.926 0.00 0.00 0.00 1.52
3398 5884 8.608844 ACCACAAACAGTTCACAAATTTTTAA 57.391 26.923 0.00 0.00 0.00 1.52
3399 5885 9.057089 ACCACAAACAGTTCACAAATTTTTAAA 57.943 25.926 0.00 0.00 0.00 1.52
3400 5886 9.884465 CCACAAACAGTTCACAAATTTTTAAAA 57.116 25.926 0.00 0.00 0.00 1.52
3412 5898 9.407514 CACAAATTTTTAAAATGTGTGAGTTCG 57.592 29.630 33.42 15.87 36.18 3.95
3427 5913 5.106118 TGTGAGTTCGAAAAATGTTCACCAA 60.106 36.000 0.00 0.00 34.18 3.67
3472 5979 9.884465 ATTTGAAGAAAGTTCGTGAATCTAAAG 57.116 29.630 0.00 0.00 0.00 1.85
3474 5981 8.657074 TGAAGAAAGTTCGTGAATCTAAAGAA 57.343 30.769 0.00 0.00 0.00 2.52
3667 6175 7.712204 AACAAAACAGAAACTAGAAAAGGGA 57.288 32.000 0.00 0.00 0.00 4.20
3687 6196 7.767250 AGGGAAAAATGAAAAACAAACCAAA 57.233 28.000 0.00 0.00 0.00 3.28
3688 6197 7.598278 AGGGAAAAATGAAAAACAAACCAAAC 58.402 30.769 0.00 0.00 0.00 2.93
3709 6218 4.570930 ACAAACAAAAACCGGTGAAACAT 58.429 34.783 8.52 0.00 39.98 2.71
3722 6231 6.649557 ACCGGTGAAACATAAACTAGAGAAAG 59.350 38.462 6.12 0.00 39.98 2.62
3724 6233 7.386848 CCGGTGAAACATAAACTAGAGAAAGAA 59.613 37.037 0.00 0.00 39.98 2.52
3730 6239 9.952188 AAACATAAACTAGAGAAAGAAAACAGC 57.048 29.630 0.00 0.00 0.00 4.40
3731 6240 8.100508 ACATAAACTAGAGAAAGAAAACAGCC 57.899 34.615 0.00 0.00 0.00 4.85
3732 6241 7.719633 ACATAAACTAGAGAAAGAAAACAGCCA 59.280 33.333 0.00 0.00 0.00 4.75
3733 6242 6.625873 AAACTAGAGAAAGAAAACAGCCAG 57.374 37.500 0.00 0.00 0.00 4.85
3734 6243 4.068599 ACTAGAGAAAGAAAACAGCCAGC 58.931 43.478 0.00 0.00 0.00 4.85
3742 6254 2.548480 AGAAAACAGCCAGCGAGTAAAC 59.452 45.455 0.00 0.00 0.00 2.01
3750 6262 2.664698 GCCAGCGAGTAAACCGAAAAAG 60.665 50.000 0.00 0.00 0.00 2.27
3751 6263 2.803956 CCAGCGAGTAAACCGAAAAAGA 59.196 45.455 0.00 0.00 0.00 2.52
3753 6265 4.083484 CCAGCGAGTAAACCGAAAAAGAAT 60.083 41.667 0.00 0.00 0.00 2.40
3754 6266 5.121142 CCAGCGAGTAAACCGAAAAAGAATA 59.879 40.000 0.00 0.00 0.00 1.75
3755 6267 6.241385 CAGCGAGTAAACCGAAAAAGAATAG 58.759 40.000 0.00 0.00 0.00 1.73
3756 6268 5.350640 AGCGAGTAAACCGAAAAAGAATAGG 59.649 40.000 0.00 0.00 0.00 2.57
3759 6271 7.571798 GCGAGTAAACCGAAAAAGAATAGGAAA 60.572 37.037 0.00 0.00 0.00 3.13
3761 6273 9.608617 GAGTAAACCGAAAAAGAATAGGAAAAG 57.391 33.333 0.00 0.00 0.00 2.27
3790 6302 1.269051 GGCAGAAGTTCCACAAAACCG 60.269 52.381 0.00 0.00 0.00 4.44
3805 6317 1.534729 AACCGTGGAGGAAATGCTTC 58.465 50.000 0.00 0.00 45.00 3.86
3821 6333 4.497473 TGCTTCCGTTAAAATGAACAGG 57.503 40.909 0.00 0.00 0.00 4.00
3822 6334 3.886505 TGCTTCCGTTAAAATGAACAGGT 59.113 39.130 0.00 0.00 0.00 4.00
3823 6335 4.226761 GCTTCCGTTAAAATGAACAGGTG 58.773 43.478 0.00 0.00 0.00 4.00
3824 6336 4.261447 GCTTCCGTTAAAATGAACAGGTGT 60.261 41.667 0.00 0.00 0.00 4.16
3825 6337 4.822036 TCCGTTAAAATGAACAGGTGTG 57.178 40.909 0.00 0.00 0.00 3.82
3826 6338 3.003897 TCCGTTAAAATGAACAGGTGTGC 59.996 43.478 0.00 0.00 0.00 4.57
3827 6339 2.970609 CGTTAAAATGAACAGGTGTGCG 59.029 45.455 0.00 0.00 0.00 5.34
3828 6340 2.697431 TAAAATGAACAGGTGTGCGC 57.303 45.000 0.00 0.00 0.00 6.09
3829 6341 0.031994 AAAATGAACAGGTGTGCGCC 59.968 50.000 4.18 0.00 0.00 6.53
3830 6342 1.106351 AAATGAACAGGTGTGCGCCA 61.106 50.000 4.18 0.00 0.00 5.69
3831 6343 1.106351 AATGAACAGGTGTGCGCCAA 61.106 50.000 4.18 0.00 0.00 4.52
3832 6344 1.795170 ATGAACAGGTGTGCGCCAAC 61.795 55.000 4.18 5.21 0.00 3.77
3833 6345 2.124320 AACAGGTGTGCGCCAACT 60.124 55.556 4.18 7.91 43.82 3.16
3834 6346 0.882927 GAACAGGTGTGCGCCAACTA 60.883 55.000 14.79 0.00 39.84 2.24
3835 6347 1.164041 AACAGGTGTGCGCCAACTAC 61.164 55.000 14.79 2.04 39.84 2.73
3836 6348 2.032071 AGGTGTGCGCCAACTACC 59.968 61.111 13.79 11.52 40.13 3.18
3837 6349 2.281208 GGTGTGCGCCAACTACCA 60.281 61.111 4.18 0.00 0.00 3.25
3838 6350 1.894756 GGTGTGCGCCAACTACCAA 60.895 57.895 4.18 0.00 0.00 3.67
3839 6351 1.448922 GGTGTGCGCCAACTACCAAA 61.449 55.000 4.18 0.00 0.00 3.28
3840 6352 0.596082 GTGTGCGCCAACTACCAAAT 59.404 50.000 4.18 0.00 0.00 2.32
3841 6353 1.807742 GTGTGCGCCAACTACCAAATA 59.192 47.619 4.18 0.00 0.00 1.40
3842 6354 2.080693 TGTGCGCCAACTACCAAATAG 58.919 47.619 4.18 0.00 36.89 1.73
3843 6355 1.091537 TGCGCCAACTACCAAATAGC 58.908 50.000 4.18 0.00 33.73 2.97
3844 6356 0.380733 GCGCCAACTACCAAATAGCC 59.619 55.000 0.00 0.00 33.73 3.93
3845 6357 2.017113 GCGCCAACTACCAAATAGCCT 61.017 52.381 0.00 0.00 33.73 4.58
3846 6358 2.365582 CGCCAACTACCAAATAGCCTT 58.634 47.619 0.00 0.00 33.73 4.35
3847 6359 2.752903 CGCCAACTACCAAATAGCCTTT 59.247 45.455 0.00 0.00 33.73 3.11
3848 6360 3.192633 CGCCAACTACCAAATAGCCTTTT 59.807 43.478 0.00 0.00 33.73 2.27
3849 6361 4.396790 CGCCAACTACCAAATAGCCTTTTA 59.603 41.667 0.00 0.00 33.73 1.52
3850 6362 5.106078 CGCCAACTACCAAATAGCCTTTTAA 60.106 40.000 0.00 0.00 33.73 1.52
3851 6363 6.097356 GCCAACTACCAAATAGCCTTTTAAC 58.903 40.000 0.00 0.00 33.73 2.01
3852 6364 6.071560 GCCAACTACCAAATAGCCTTTTAACT 60.072 38.462 0.00 0.00 33.73 2.24
3853 6365 7.535997 CCAACTACCAAATAGCCTTTTAACTC 58.464 38.462 0.00 0.00 33.73 3.01
3854 6366 7.393515 CCAACTACCAAATAGCCTTTTAACTCT 59.606 37.037 0.00 0.00 33.73 3.24
3855 6367 8.793592 CAACTACCAAATAGCCTTTTAACTCTT 58.206 33.333 0.00 0.00 33.73 2.85
3856 6368 8.935614 ACTACCAAATAGCCTTTTAACTCTTT 57.064 30.769 0.00 0.00 33.73 2.52
3860 6372 9.363401 ACCAAATAGCCTTTTAACTCTTTAACT 57.637 29.630 0.00 0.00 0.00 2.24
3861 6373 9.841880 CCAAATAGCCTTTTAACTCTTTAACTC 57.158 33.333 0.00 0.00 0.00 3.01
3862 6374 9.543018 CAAATAGCCTTTTAACTCTTTAACTCG 57.457 33.333 0.00 0.00 0.00 4.18
3863 6375 5.608676 AGCCTTTTAACTCTTTAACTCGC 57.391 39.130 0.00 0.00 0.00 5.03
3864 6376 4.151867 AGCCTTTTAACTCTTTAACTCGCG 59.848 41.667 0.00 0.00 0.00 5.87
3865 6377 4.392216 CCTTTTAACTCTTTAACTCGCGC 58.608 43.478 0.00 0.00 0.00 6.86
3866 6378 4.392216 CTTTTAACTCTTTAACTCGCGCC 58.608 43.478 0.00 0.00 0.00 6.53
3867 6379 3.308438 TTAACTCTTTAACTCGCGCCT 57.692 42.857 0.00 0.00 0.00 5.52
3868 6380 2.165319 AACTCTTTAACTCGCGCCTT 57.835 45.000 0.00 0.00 0.00 4.35
3869 6381 1.429463 ACTCTTTAACTCGCGCCTTG 58.571 50.000 0.00 0.00 0.00 3.61
3870 6382 1.000506 ACTCTTTAACTCGCGCCTTGA 59.999 47.619 0.00 0.00 0.00 3.02
3871 6383 1.656095 CTCTTTAACTCGCGCCTTGAG 59.344 52.381 0.00 5.41 39.40 3.02
3873 6385 1.126846 CTTTAACTCGCGCCTTGAGTG 59.873 52.381 15.73 1.78 45.62 3.51
3874 6386 0.032952 TTAACTCGCGCCTTGAGTGT 59.967 50.000 15.73 9.46 45.62 3.55
3875 6387 0.388134 TAACTCGCGCCTTGAGTGTC 60.388 55.000 15.73 0.00 45.62 3.67
3876 6388 2.049156 CTCGCGCCTTGAGTGTCA 60.049 61.111 0.00 0.00 0.00 3.58
3877 6389 1.664649 CTCGCGCCTTGAGTGTCAA 60.665 57.895 0.00 0.00 34.79 3.18
3878 6390 1.221466 CTCGCGCCTTGAGTGTCAAA 61.221 55.000 0.00 0.00 35.73 2.69
3879 6391 0.602638 TCGCGCCTTGAGTGTCAAAT 60.603 50.000 0.00 0.00 35.73 2.32
3880 6392 1.075542 CGCGCCTTGAGTGTCAAATA 58.924 50.000 0.00 0.00 35.73 1.40
3881 6393 1.061131 CGCGCCTTGAGTGTCAAATAG 59.939 52.381 0.00 0.00 35.73 1.73
3882 6394 1.398390 GCGCCTTGAGTGTCAAATAGG 59.602 52.381 0.00 0.00 35.73 2.57
3883 6395 2.935238 GCGCCTTGAGTGTCAAATAGGA 60.935 50.000 0.00 0.00 35.73 2.94
3884 6396 3.334691 CGCCTTGAGTGTCAAATAGGAA 58.665 45.455 0.00 0.00 35.73 3.36
3885 6397 3.125316 CGCCTTGAGTGTCAAATAGGAAC 59.875 47.826 0.00 0.00 35.73 3.62
3886 6398 4.327680 GCCTTGAGTGTCAAATAGGAACT 58.672 43.478 0.00 0.00 38.11 3.01
3887 6399 4.154918 GCCTTGAGTGTCAAATAGGAACTG 59.845 45.833 0.00 0.00 35.79 3.16
3888 6400 5.551233 CCTTGAGTGTCAAATAGGAACTGA 58.449 41.667 0.00 0.00 35.79 3.41
3889 6401 5.409826 CCTTGAGTGTCAAATAGGAACTGAC 59.590 44.000 0.00 0.00 35.79 3.51
3890 6402 5.545063 TGAGTGTCAAATAGGAACTGACA 57.455 39.130 0.16 0.16 45.39 3.58
3903 6415 9.726438 AATAGGAACTGACATATATGTAAAGGC 57.274 33.333 18.28 13.69 40.01 4.35
3904 6416 7.380423 AGGAACTGACATATATGTAAAGGCT 57.620 36.000 18.28 10.36 41.95 4.58
3905 6417 8.492415 AGGAACTGACATATATGTAAAGGCTA 57.508 34.615 18.28 0.00 41.95 3.93
3906 6418 8.934697 AGGAACTGACATATATGTAAAGGCTAA 58.065 33.333 18.28 0.00 41.95 3.09
3907 6419 9.726438 GGAACTGACATATATGTAAAGGCTAAT 57.274 33.333 18.28 5.63 41.95 1.73
3910 6422 9.507329 ACTGACATATATGTAAAGGCTAATTGG 57.493 33.333 18.28 0.00 41.95 3.16
3911 6423 9.507329 CTGACATATATGTAAAGGCTAATTGGT 57.493 33.333 18.28 0.00 41.95 3.67
3912 6424 9.860650 TGACATATATGTAAAGGCTAATTGGTT 57.139 29.630 18.28 0.00 41.95 3.67
3918 6430 5.719173 TGTAAAGGCTAATTGGTTTGATGC 58.281 37.500 0.00 0.00 0.00 3.91
3919 6431 5.480073 TGTAAAGGCTAATTGGTTTGATGCT 59.520 36.000 0.00 0.00 0.00 3.79
3920 6432 6.661377 TGTAAAGGCTAATTGGTTTGATGCTA 59.339 34.615 0.00 0.00 0.00 3.49
3921 6433 6.603940 AAAGGCTAATTGGTTTGATGCTAA 57.396 33.333 0.00 0.00 0.00 3.09
3922 6434 6.603940 AAGGCTAATTGGTTTGATGCTAAA 57.396 33.333 0.00 0.00 0.00 1.85
3923 6435 6.603940 AGGCTAATTGGTTTGATGCTAAAA 57.396 33.333 0.00 0.00 0.00 1.52
3924 6436 6.633856 AGGCTAATTGGTTTGATGCTAAAAG 58.366 36.000 0.00 0.00 0.00 2.27
3925 6437 6.211384 AGGCTAATTGGTTTGATGCTAAAAGT 59.789 34.615 0.00 0.00 0.00 2.66
3926 6438 6.873605 GGCTAATTGGTTTGATGCTAAAAGTT 59.126 34.615 0.00 0.00 0.00 2.66
3927 6439 8.032451 GGCTAATTGGTTTGATGCTAAAAGTTA 58.968 33.333 0.00 0.00 0.00 2.24
3928 6440 9.418045 GCTAATTGGTTTGATGCTAAAAGTTAA 57.582 29.630 0.00 0.00 0.00 2.01
3931 6443 9.777297 AATTGGTTTGATGCTAAAAGTTAACAT 57.223 25.926 8.61 0.00 0.00 2.71
3932 6444 9.777297 ATTGGTTTGATGCTAAAAGTTAACATT 57.223 25.926 8.61 0.00 0.00 2.71
3933 6445 8.810652 TGGTTTGATGCTAAAAGTTAACATTC 57.189 30.769 8.61 0.00 0.00 2.67
3934 6446 8.637986 TGGTTTGATGCTAAAAGTTAACATTCT 58.362 29.630 8.61 0.00 0.00 2.40
3951 6463 7.713764 AACATTCTAAAATTTGACAACTGCC 57.286 32.000 0.00 0.00 0.00 4.85
3952 6464 6.815089 ACATTCTAAAATTTGACAACTGCCA 58.185 32.000 0.00 0.00 0.00 4.92
3953 6465 7.271511 ACATTCTAAAATTTGACAACTGCCAA 58.728 30.769 0.00 0.00 0.00 4.52
3954 6466 7.768120 ACATTCTAAAATTTGACAACTGCCAAA 59.232 29.630 0.00 0.00 36.80 3.28
3955 6467 8.776470 CATTCTAAAATTTGACAACTGCCAAAT 58.224 29.630 0.00 0.00 42.72 2.32
3956 6468 7.712264 TCTAAAATTTGACAACTGCCAAATG 57.288 32.000 4.96 0.00 40.78 2.32
3957 6469 7.271511 TCTAAAATTTGACAACTGCCAAATGT 58.728 30.769 4.96 0.00 40.78 2.71
3958 6470 6.756299 AAAATTTGACAACTGCCAAATGTT 57.244 29.167 4.96 3.49 40.78 2.71
3959 6471 5.738118 AATTTGACAACTGCCAAATGTTG 57.262 34.783 4.96 0.00 46.19 3.33
3972 6484 5.151297 CCAAATGTTGGCTAAAGATTGGT 57.849 39.130 11.35 0.00 45.17 3.67
3973 6485 5.550290 CCAAATGTTGGCTAAAGATTGGTT 58.450 37.500 11.35 0.00 45.17 3.67
3974 6486 5.409214 CCAAATGTTGGCTAAAGATTGGTTG 59.591 40.000 11.35 1.92 45.17 3.77
3975 6487 3.658757 TGTTGGCTAAAGATTGGTTGC 57.341 42.857 0.00 0.00 0.00 4.17
3976 6488 2.961741 TGTTGGCTAAAGATTGGTTGCA 59.038 40.909 0.00 0.00 0.00 4.08
3977 6489 3.577848 TGTTGGCTAAAGATTGGTTGCAT 59.422 39.130 0.00 0.00 0.00 3.96
3978 6490 4.769488 TGTTGGCTAAAGATTGGTTGCATA 59.231 37.500 0.00 0.00 0.00 3.14
3979 6491 5.421693 TGTTGGCTAAAGATTGGTTGCATAT 59.578 36.000 0.00 0.00 0.00 1.78
3980 6492 6.070881 TGTTGGCTAAAGATTGGTTGCATATT 60.071 34.615 0.00 0.00 0.00 1.28
3981 6493 6.147864 TGGCTAAAGATTGGTTGCATATTC 57.852 37.500 0.00 0.00 0.00 1.75
3982 6494 5.655974 TGGCTAAAGATTGGTTGCATATTCA 59.344 36.000 0.00 0.00 0.00 2.57
3983 6495 6.324512 TGGCTAAAGATTGGTTGCATATTCAT 59.675 34.615 0.00 0.00 0.00 2.57
3984 6496 7.147689 TGGCTAAAGATTGGTTGCATATTCATT 60.148 33.333 0.00 0.00 0.00 2.57
3985 6497 7.712205 GGCTAAAGATTGGTTGCATATTCATTT 59.288 33.333 0.00 0.00 0.00 2.32
3986 6498 9.101655 GCTAAAGATTGGTTGCATATTCATTTT 57.898 29.630 0.00 0.00 0.00 1.82
3988 6500 7.760131 AAGATTGGTTGCATATTCATTTTCG 57.240 32.000 0.00 0.00 0.00 3.46
3989 6501 6.866480 AGATTGGTTGCATATTCATTTTCGT 58.134 32.000 0.00 0.00 0.00 3.85
3990 6502 7.322664 AGATTGGTTGCATATTCATTTTCGTT 58.677 30.769 0.00 0.00 0.00 3.85
3991 6503 6.702972 TTGGTTGCATATTCATTTTCGTTG 57.297 33.333 0.00 0.00 0.00 4.10
3992 6504 4.624882 TGGTTGCATATTCATTTTCGTTGC 59.375 37.500 0.00 0.00 0.00 4.17
3993 6505 4.032786 GGTTGCATATTCATTTTCGTTGCC 59.967 41.667 0.00 0.00 0.00 4.52
3994 6506 4.446994 TGCATATTCATTTTCGTTGCCA 57.553 36.364 0.00 0.00 0.00 4.92
3995 6507 4.814147 TGCATATTCATTTTCGTTGCCAA 58.186 34.783 0.00 0.00 0.00 4.52
3996 6508 5.417811 TGCATATTCATTTTCGTTGCCAAT 58.582 33.333 0.00 0.00 0.00 3.16
3997 6509 5.519566 TGCATATTCATTTTCGTTGCCAATC 59.480 36.000 0.00 0.00 0.00 2.67
3998 6510 5.750067 GCATATTCATTTTCGTTGCCAATCT 59.250 36.000 0.00 0.00 0.00 2.40
3999 6511 6.256321 GCATATTCATTTTCGTTGCCAATCTT 59.744 34.615 0.00 0.00 0.00 2.40
4000 6512 7.434897 GCATATTCATTTTCGTTGCCAATCTTA 59.565 33.333 0.00 0.00 0.00 2.10
4001 6513 8.745837 CATATTCATTTTCGTTGCCAATCTTAC 58.254 33.333 0.00 0.00 0.00 2.34
4002 6514 5.697473 TCATTTTCGTTGCCAATCTTACA 57.303 34.783 0.00 0.00 0.00 2.41
4003 6515 6.078202 TCATTTTCGTTGCCAATCTTACAA 57.922 33.333 0.00 0.00 0.00 2.41
4004 6516 6.507900 TCATTTTCGTTGCCAATCTTACAAA 58.492 32.000 0.00 0.00 0.00 2.83
4005 6517 6.980978 TCATTTTCGTTGCCAATCTTACAAAA 59.019 30.769 0.00 0.00 0.00 2.44
4006 6518 7.492669 TCATTTTCGTTGCCAATCTTACAAAAA 59.507 29.630 0.00 0.00 0.00 1.94
4045 6557 9.880157 ATTATCAATGCTTGCTACTTTTGATTT 57.120 25.926 9.07 0.00 35.87 2.17
4046 6558 9.709495 TTATCAATGCTTGCTACTTTTGATTTT 57.291 25.926 9.07 0.00 35.87 1.82
4047 6559 7.410800 TCAATGCTTGCTACTTTTGATTTTG 57.589 32.000 0.00 0.00 0.00 2.44
4048 6560 5.851047 ATGCTTGCTACTTTTGATTTTGC 57.149 34.783 0.00 0.00 0.00 3.68
4049 6561 4.691175 TGCTTGCTACTTTTGATTTTGCA 58.309 34.783 0.00 0.00 0.00 4.08
4050 6562 5.114780 TGCTTGCTACTTTTGATTTTGCAA 58.885 33.333 0.00 0.00 37.39 4.08
4051 6563 5.583854 TGCTTGCTACTTTTGATTTTGCAAA 59.416 32.000 8.05 8.05 38.25 3.68
4052 6564 6.093219 TGCTTGCTACTTTTGATTTTGCAAAA 59.907 30.769 25.76 25.76 43.31 2.44
4053 6565 7.134163 GCTTGCTACTTTTGATTTTGCAAAAT 58.866 30.769 32.11 32.11 44.14 1.82
4054 6566 8.281893 GCTTGCTACTTTTGATTTTGCAAAATA 58.718 29.630 31.79 18.17 44.14 1.40
4064 6576 9.557338 TTTGATTTTGCAAAATATTAGCAATGC 57.443 25.926 31.79 18.00 46.32 3.56
4065 6577 7.695820 TGATTTTGCAAAATATTAGCAATGCC 58.304 30.769 31.79 17.57 46.32 4.40
4066 6578 7.336176 TGATTTTGCAAAATATTAGCAATGCCA 59.664 29.630 31.79 19.55 46.32 4.92
4067 6579 7.444629 TTTTGCAAAATATTAGCAATGCCAA 57.555 28.000 20.46 13.77 46.32 4.52
4068 6580 7.444629 TTTGCAAAATATTAGCAATGCCAAA 57.555 28.000 21.70 9.05 46.32 3.28
4069 6581 7.627298 TTGCAAAATATTAGCAATGCCAAAT 57.373 28.000 18.84 5.12 42.71 2.32
4070 6582 8.728337 TTGCAAAATATTAGCAATGCCAAATA 57.272 26.923 18.84 7.32 42.71 1.40
4071 6583 8.367943 TGCAAAATATTAGCAATGCCAAATAG 57.632 30.769 11.75 0.00 34.97 1.73
4072 6584 7.986320 TGCAAAATATTAGCAATGCCAAATAGT 59.014 29.630 11.75 3.42 34.97 2.12
4073 6585 8.277713 GCAAAATATTAGCAATGCCAAATAGTG 58.722 33.333 0.00 7.80 0.00 2.74
4096 6608 5.954434 GTAGCAAACCAACGTATTATCGA 57.046 39.130 0.00 0.00 34.70 3.59
4097 6609 6.335176 GTAGCAAACCAACGTATTATCGAA 57.665 37.500 0.00 0.00 34.70 3.71
4098 6610 6.940714 GTAGCAAACCAACGTATTATCGAAT 58.059 36.000 0.00 0.00 34.70 3.34
4099 6611 5.806286 AGCAAACCAACGTATTATCGAATG 58.194 37.500 0.00 0.00 34.70 2.67
4100 6612 5.583061 AGCAAACCAACGTATTATCGAATGA 59.417 36.000 0.00 0.00 34.70 2.57
4101 6613 6.260050 AGCAAACCAACGTATTATCGAATGAT 59.740 34.615 0.00 0.00 38.67 2.45
4102 6614 6.910433 GCAAACCAACGTATTATCGAATGATT 59.090 34.615 0.00 0.00 35.99 2.57
4103 6615 8.065407 GCAAACCAACGTATTATCGAATGATTA 58.935 33.333 0.00 0.00 35.99 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.022329 CGTCCTTATTTCCTTTTTGGTGCT 60.022 41.667 0.00 0.00 37.07 4.40
2 3 5.447624 ACGTCCTTATTTCCTTTTTGGTG 57.552 39.130 0.00 0.00 37.07 4.17
3 4 5.737922 GCAACGTCCTTATTTCCTTTTTGGT 60.738 40.000 0.00 0.00 37.07 3.67
4 5 4.684242 GCAACGTCCTTATTTCCTTTTTGG 59.316 41.667 0.00 0.00 37.10 3.28
5 6 4.381566 CGCAACGTCCTTATTTCCTTTTTG 59.618 41.667 0.00 0.00 0.00 2.44
6 7 4.542735 CGCAACGTCCTTATTTCCTTTTT 58.457 39.130 0.00 0.00 0.00 1.94
7 8 3.610821 GCGCAACGTCCTTATTTCCTTTT 60.611 43.478 0.30 0.00 0.00 2.27
8 9 2.095415 GCGCAACGTCCTTATTTCCTTT 60.095 45.455 0.30 0.00 0.00 3.11
9 10 1.467342 GCGCAACGTCCTTATTTCCTT 59.533 47.619 0.30 0.00 0.00 3.36
10 11 1.084289 GCGCAACGTCCTTATTTCCT 58.916 50.000 0.30 0.00 0.00 3.36
11 12 0.247537 CGCGCAACGTCCTTATTTCC 60.248 55.000 8.75 0.00 36.87 3.13
12 13 0.856080 GCGCGCAACGTCCTTATTTC 60.856 55.000 29.10 0.00 46.11 2.17
13 14 1.133869 GCGCGCAACGTCCTTATTT 59.866 52.632 29.10 0.00 46.11 1.40
14 15 2.782615 GCGCGCAACGTCCTTATT 59.217 55.556 29.10 0.00 46.11 1.40
15 16 3.550992 CGCGCGCAACGTCCTTAT 61.551 61.111 32.61 0.00 46.11 1.73
39 40 4.873129 CGATCGACACCAGGCGGG 62.873 72.222 10.26 0.79 44.81 6.13
40 41 4.129737 ACGATCGACACCAGGCGG 62.130 66.667 24.34 0.00 38.77 6.13
41 42 2.579787 GACGATCGACACCAGGCG 60.580 66.667 24.34 0.00 0.00 5.52
42 43 1.141881 ATGACGATCGACACCAGGC 59.858 57.895 24.34 0.00 0.00 4.85
43 44 0.528466 CCATGACGATCGACACCAGG 60.528 60.000 24.34 19.35 0.00 4.45
44 45 1.148157 GCCATGACGATCGACACCAG 61.148 60.000 24.34 14.49 0.00 4.00
45 46 1.153647 GCCATGACGATCGACACCA 60.154 57.895 24.34 13.64 0.00 4.17
46 47 0.872021 GAGCCATGACGATCGACACC 60.872 60.000 24.34 13.45 0.00 4.16
47 48 0.179137 TGAGCCATGACGATCGACAC 60.179 55.000 24.34 10.24 0.00 3.67
48 49 0.179137 GTGAGCCATGACGATCGACA 60.179 55.000 24.34 22.86 0.00 4.35
49 50 1.202973 CGTGAGCCATGACGATCGAC 61.203 60.000 24.34 17.11 37.81 4.20
50 51 1.064134 CGTGAGCCATGACGATCGA 59.936 57.895 24.34 0.00 37.81 3.59
51 52 1.202973 GACGTGAGCCATGACGATCG 61.203 60.000 14.88 14.88 38.94 3.69
52 53 0.179137 TGACGTGAGCCATGACGATC 60.179 55.000 11.17 6.14 38.94 3.69
53 54 0.458543 GTGACGTGAGCCATGACGAT 60.459 55.000 11.17 0.00 38.94 3.73
54 55 1.080772 GTGACGTGAGCCATGACGA 60.081 57.895 11.17 0.00 38.94 4.20
55 56 2.436539 CGTGACGTGAGCCATGACG 61.437 63.158 0.00 0.00 41.41 4.35
56 57 1.073216 CTCGTGACGTGAGCCATGAC 61.073 60.000 4.40 0.00 0.00 3.06
57 58 1.212751 CTCGTGACGTGAGCCATGA 59.787 57.895 4.40 0.00 0.00 3.07
58 59 0.799917 CTCTCGTGACGTGAGCCATG 60.800 60.000 21.58 1.94 39.80 3.66
59 60 1.508545 CTCTCGTGACGTGAGCCAT 59.491 57.895 21.58 0.00 39.80 4.40
60 61 2.954611 CTCTCGTGACGTGAGCCA 59.045 61.111 21.58 0.00 39.80 4.75
63 64 1.135731 GAGGCTCTCGTGACGTGAG 59.864 63.158 26.87 26.87 46.02 3.51
64 65 3.264947 GAGGCTCTCGTGACGTGA 58.735 61.111 7.40 9.47 0.00 4.35
79 80 2.742372 CGGGGCAAACCTCACGAG 60.742 66.667 0.00 0.00 35.35 4.18
82 83 4.660938 AGGCGGGGCAAACCTCAC 62.661 66.667 0.00 0.00 35.35 3.51
83 84 3.897122 AAGGCGGGGCAAACCTCA 61.897 61.111 0.00 0.00 35.35 3.86
84 85 3.373565 CAAGGCGGGGCAAACCTC 61.374 66.667 0.00 0.00 40.03 3.85
85 86 1.858739 TATCAAGGCGGGGCAAACCT 61.859 55.000 0.00 0.00 40.03 3.50
86 87 0.755327 ATATCAAGGCGGGGCAAACC 60.755 55.000 0.00 0.00 39.11 3.27
87 88 0.668535 GATATCAAGGCGGGGCAAAC 59.331 55.000 0.00 0.00 0.00 2.93
88 89 0.550914 AGATATCAAGGCGGGGCAAA 59.449 50.000 5.32 0.00 0.00 3.68
89 90 0.108585 GAGATATCAAGGCGGGGCAA 59.891 55.000 5.32 0.00 0.00 4.52
90 91 1.754745 GAGATATCAAGGCGGGGCA 59.245 57.895 5.32 0.00 0.00 5.36
91 92 1.003233 GGAGATATCAAGGCGGGGC 60.003 63.158 5.32 0.00 0.00 5.80
92 93 1.293498 CGGAGATATCAAGGCGGGG 59.707 63.158 5.32 0.00 0.00 5.73
93 94 1.374758 GCGGAGATATCAAGGCGGG 60.375 63.158 5.32 0.00 0.00 6.13
94 95 0.389166 GAGCGGAGATATCAAGGCGG 60.389 60.000 5.32 0.00 0.00 6.13
95 96 0.389166 GGAGCGGAGATATCAAGGCG 60.389 60.000 5.32 0.00 0.00 5.52
96 97 0.972883 AGGAGCGGAGATATCAAGGC 59.027 55.000 5.32 4.74 0.00 4.35
97 98 1.201181 CGAGGAGCGGAGATATCAAGG 59.799 57.143 5.32 0.00 36.03 3.61
98 99 1.883275 ACGAGGAGCGGAGATATCAAG 59.117 52.381 5.32 0.00 46.49 3.02
99 100 1.609072 CACGAGGAGCGGAGATATCAA 59.391 52.381 5.32 0.00 46.49 2.57
100 101 1.202770 TCACGAGGAGCGGAGATATCA 60.203 52.381 5.32 0.00 46.49 2.15
101 102 1.466950 CTCACGAGGAGCGGAGATATC 59.533 57.143 0.00 0.00 46.49 1.63
102 103 1.529226 CTCACGAGGAGCGGAGATAT 58.471 55.000 0.00 0.00 46.49 1.63
103 104 3.008141 CTCACGAGGAGCGGAGATA 57.992 57.895 0.00 0.00 46.49 1.98
104 105 3.834726 CTCACGAGGAGCGGAGAT 58.165 61.111 0.00 0.00 46.49 2.75
111 112 3.073735 AGGCAGGCTCACGAGGAG 61.074 66.667 0.00 0.00 46.93 3.69
112 113 3.385384 CAGGCAGGCTCACGAGGA 61.385 66.667 0.00 0.00 0.00 3.71
113 114 3.385384 TCAGGCAGGCTCACGAGG 61.385 66.667 0.00 0.00 0.00 4.63
114 115 1.315981 TAGTCAGGCAGGCTCACGAG 61.316 60.000 0.00 0.00 31.94 4.18
115 116 1.304134 TAGTCAGGCAGGCTCACGA 60.304 57.895 0.00 0.00 31.94 4.35
116 117 1.140589 CTAGTCAGGCAGGCTCACG 59.859 63.158 0.00 0.00 31.94 4.35
117 118 1.519719 CCTAGTCAGGCAGGCTCAC 59.480 63.158 0.00 0.00 34.35 3.51
118 119 4.040645 CCTAGTCAGGCAGGCTCA 57.959 61.111 0.00 0.00 34.35 4.26
137 138 3.423409 CGCAAGACCTCCTCAGGAGTG 62.423 61.905 20.05 12.00 44.54 3.51
138 139 1.254284 CGCAAGACCTCCTCAGGAGT 61.254 60.000 20.05 7.72 44.54 3.85
139 140 1.254284 ACGCAAGACCTCCTCAGGAG 61.254 60.000 14.68 14.68 45.24 3.69
140 141 1.228894 ACGCAAGACCTCCTCAGGA 60.229 57.895 0.00 0.00 41.60 3.86
141 142 1.216710 GACGCAAGACCTCCTCAGG 59.783 63.158 0.00 0.00 43.80 3.86
142 143 1.153939 CGACGCAAGACCTCCTCAG 60.154 63.158 0.00 0.00 43.62 3.35
143 144 1.863662 GACGACGCAAGACCTCCTCA 61.864 60.000 0.00 0.00 43.62 3.86
144 145 1.153997 GACGACGCAAGACCTCCTC 60.154 63.158 0.00 0.00 43.62 3.71
145 146 2.637383 GGACGACGCAAGACCTCCT 61.637 63.158 0.00 0.00 43.62 3.69
146 147 2.126031 GGACGACGCAAGACCTCC 60.126 66.667 0.00 0.00 43.62 4.30
147 148 2.126031 GGGACGACGCAAGACCTC 60.126 66.667 0.00 0.00 43.62 3.85
148 149 3.692406 GGGGACGACGCAAGACCT 61.692 66.667 4.20 0.00 43.62 3.85
149 150 3.644399 GAGGGGACGACGCAAGACC 62.644 68.421 4.20 0.00 43.62 3.85
150 151 2.126031 GAGGGGACGACGCAAGAC 60.126 66.667 4.20 0.00 43.62 3.01
151 152 3.744719 CGAGGGGACGACGCAAGA 61.745 66.667 4.20 0.00 43.62 3.02
165 166 1.227089 CATCCAAGACCCTCGCGAG 60.227 63.158 29.06 29.06 0.00 5.03
166 167 2.892640 CATCCAAGACCCTCGCGA 59.107 61.111 9.26 9.26 0.00 5.87
167 168 2.892425 GCATCCAAGACCCTCGCG 60.892 66.667 0.00 0.00 0.00 5.87
168 169 2.514824 GGCATCCAAGACCCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
169 170 0.745845 CAAGGCATCCAAGACCCTCG 60.746 60.000 0.00 0.00 0.00 4.63
170 171 0.329596 ACAAGGCATCCAAGACCCTC 59.670 55.000 0.00 0.00 0.00 4.30
171 172 0.779997 AACAAGGCATCCAAGACCCT 59.220 50.000 0.00 0.00 0.00 4.34
172 173 0.890683 CAACAAGGCATCCAAGACCC 59.109 55.000 0.00 0.00 0.00 4.46
173 174 1.909700 TCAACAAGGCATCCAAGACC 58.090 50.000 0.00 0.00 0.00 3.85
174 175 3.084039 TCATCAACAAGGCATCCAAGAC 58.916 45.455 0.00 0.00 0.00 3.01
175 176 3.438216 TCATCAACAAGGCATCCAAGA 57.562 42.857 0.00 0.00 0.00 3.02
176 177 3.760151 TCTTCATCAACAAGGCATCCAAG 59.240 43.478 0.00 0.00 0.00 3.61
177 178 3.765381 TCTTCATCAACAAGGCATCCAA 58.235 40.909 0.00 0.00 0.00 3.53
178 179 3.438216 TCTTCATCAACAAGGCATCCA 57.562 42.857 0.00 0.00 0.00 3.41
179 180 3.067742 CCATCTTCATCAACAAGGCATCC 59.932 47.826 0.00 0.00 0.00 3.51
180 181 3.067742 CCCATCTTCATCAACAAGGCATC 59.932 47.826 0.00 0.00 0.00 3.91
181 182 3.028850 CCCATCTTCATCAACAAGGCAT 58.971 45.455 0.00 0.00 0.00 4.40
182 183 2.225091 ACCCATCTTCATCAACAAGGCA 60.225 45.455 0.00 0.00 0.00 4.75
183 184 2.424956 GACCCATCTTCATCAACAAGGC 59.575 50.000 0.00 0.00 0.00 4.35
184 185 2.679837 CGACCCATCTTCATCAACAAGG 59.320 50.000 0.00 0.00 0.00 3.61
185 186 3.338249 ACGACCCATCTTCATCAACAAG 58.662 45.455 0.00 0.00 0.00 3.16
186 187 3.417069 ACGACCCATCTTCATCAACAA 57.583 42.857 0.00 0.00 0.00 2.83
187 188 3.674955 CGTACGACCCATCTTCATCAACA 60.675 47.826 10.44 0.00 0.00 3.33
188 189 2.858344 CGTACGACCCATCTTCATCAAC 59.142 50.000 10.44 0.00 0.00 3.18
189 190 2.756207 TCGTACGACCCATCTTCATCAA 59.244 45.455 15.28 0.00 0.00 2.57
190 191 2.098607 GTCGTACGACCCATCTTCATCA 59.901 50.000 33.07 0.00 39.08 3.07
191 192 2.728922 GTCGTACGACCCATCTTCATC 58.271 52.381 33.07 7.68 39.08 2.92
192 193 2.865343 GTCGTACGACCCATCTTCAT 57.135 50.000 33.07 0.00 39.08 2.57
202 203 2.488087 AAGCCAGCAGGTCGTACGAC 62.488 60.000 34.70 34.70 43.87 4.34
203 204 0.961857 TAAGCCAGCAGGTCGTACGA 60.962 55.000 15.28 15.28 37.19 3.43
204 205 0.525668 CTAAGCCAGCAGGTCGTACG 60.526 60.000 9.53 9.53 37.19 3.67
205 206 3.347411 CTAAGCCAGCAGGTCGTAC 57.653 57.895 0.00 0.00 37.19 3.67
236 237 1.970114 CAGACTTGCCTGCCTGTGG 60.970 63.158 0.00 0.00 0.00 4.17
237 238 1.970114 CCAGACTTGCCTGCCTGTG 60.970 63.158 0.00 0.00 32.97 3.66
238 239 2.121992 CTCCAGACTTGCCTGCCTGT 62.122 60.000 0.00 0.00 32.97 4.00
239 240 1.376942 CTCCAGACTTGCCTGCCTG 60.377 63.158 0.00 0.00 32.97 4.85
240 241 1.537397 TCTCCAGACTTGCCTGCCT 60.537 57.895 0.00 0.00 32.97 4.75
241 242 1.376553 GTCTCCAGACTTGCCTGCC 60.377 63.158 0.00 0.00 41.65 4.85
242 243 1.376553 GGTCTCCAGACTTGCCTGC 60.377 63.158 6.68 0.00 44.20 4.85
243 244 1.298014 GGGTCTCCAGACTTGCCTG 59.702 63.158 6.68 0.00 44.20 4.85
244 245 1.920835 GGGGTCTCCAGACTTGCCT 60.921 63.158 6.68 0.00 44.20 4.75
245 246 1.920835 AGGGGTCTCCAGACTTGCC 60.921 63.158 6.68 0.00 44.20 4.52
246 247 1.298014 CAGGGGTCTCCAGACTTGC 59.702 63.158 6.68 0.00 44.20 4.01
247 248 1.002544 GAACAGGGGTCTCCAGACTTG 59.997 57.143 6.68 5.95 44.20 3.16
248 249 1.353091 GAACAGGGGTCTCCAGACTT 58.647 55.000 6.68 0.00 44.20 3.01
249 250 0.545548 GGAACAGGGGTCTCCAGACT 60.546 60.000 6.68 0.00 44.20 3.24
250 251 1.554583 GGGAACAGGGGTCTCCAGAC 61.555 65.000 0.00 0.00 44.04 3.51
251 252 1.229529 GGGAACAGGGGTCTCCAGA 60.230 63.158 0.00 0.00 38.24 3.86
252 253 1.538876 TGGGAACAGGGGTCTCCAG 60.539 63.158 0.00 0.00 38.24 3.86
253 254 2.624114 TGGGAACAGGGGTCTCCA 59.376 61.111 0.00 0.00 38.24 3.86
263 264 2.029964 GTCGGCGTTCTGGGAACA 59.970 61.111 6.85 0.00 39.59 3.18
264 265 0.953960 ATTGTCGGCGTTCTGGGAAC 60.954 55.000 6.85 0.00 0.00 3.62
265 266 0.609151 TATTGTCGGCGTTCTGGGAA 59.391 50.000 6.85 0.00 0.00 3.97
266 267 0.174845 CTATTGTCGGCGTTCTGGGA 59.825 55.000 6.85 0.00 0.00 4.37
267 268 1.429148 GCTATTGTCGGCGTTCTGGG 61.429 60.000 6.85 0.00 0.00 4.45
268 269 1.752501 CGCTATTGTCGGCGTTCTGG 61.753 60.000 6.85 0.00 45.34 3.86
269 270 1.631072 CGCTATTGTCGGCGTTCTG 59.369 57.895 6.85 0.00 45.34 3.02
270 271 4.088421 CGCTATTGTCGGCGTTCT 57.912 55.556 6.85 0.00 45.34 3.01
275 276 5.779806 AATTCATATACGCTATTGTCGGC 57.220 39.130 0.00 0.00 0.00 5.54
276 277 6.809689 TGGTAATTCATATACGCTATTGTCGG 59.190 38.462 0.00 0.00 0.00 4.79
277 278 7.541091 ACTGGTAATTCATATACGCTATTGTCG 59.459 37.037 0.00 0.00 0.00 4.35
278 279 8.648097 CACTGGTAATTCATATACGCTATTGTC 58.352 37.037 0.00 0.00 0.00 3.18
279 280 7.117812 GCACTGGTAATTCATATACGCTATTGT 59.882 37.037 0.00 0.00 0.00 2.71
280 281 7.331934 AGCACTGGTAATTCATATACGCTATTG 59.668 37.037 0.00 0.00 0.00 1.90
281 282 7.386851 AGCACTGGTAATTCATATACGCTATT 58.613 34.615 0.00 0.00 0.00 1.73
282 283 6.936279 AGCACTGGTAATTCATATACGCTAT 58.064 36.000 0.00 0.00 0.00 2.97
283 284 6.340962 AGCACTGGTAATTCATATACGCTA 57.659 37.500 0.00 0.00 0.00 4.26
284 285 5.215252 AGCACTGGTAATTCATATACGCT 57.785 39.130 0.00 0.00 0.00 5.07
285 286 5.696724 AGAAGCACTGGTAATTCATATACGC 59.303 40.000 0.00 0.00 0.00 4.42
286 287 7.438160 TGAAGAAGCACTGGTAATTCATATACG 59.562 37.037 4.66 0.00 0.00 3.06
287 288 8.662781 TGAAGAAGCACTGGTAATTCATATAC 57.337 34.615 4.66 0.00 0.00 1.47
288 289 9.276590 CATGAAGAAGCACTGGTAATTCATATA 57.723 33.333 15.31 0.00 34.94 0.86
289 290 7.994911 TCATGAAGAAGCACTGGTAATTCATAT 59.005 33.333 15.31 0.79 34.94 1.78
290 291 7.337938 TCATGAAGAAGCACTGGTAATTCATA 58.662 34.615 15.31 6.81 34.94 2.15
291 292 6.182627 TCATGAAGAAGCACTGGTAATTCAT 58.817 36.000 12.03 12.03 36.59 2.57
292 293 5.559770 TCATGAAGAAGCACTGGTAATTCA 58.440 37.500 0.00 9.32 0.00 2.57
293 294 6.690194 ATCATGAAGAAGCACTGGTAATTC 57.310 37.500 0.00 0.51 0.00 2.17
294 295 7.472334 AAATCATGAAGAAGCACTGGTAATT 57.528 32.000 0.00 0.00 0.00 1.40
295 296 7.363268 GGAAAATCATGAAGAAGCACTGGTAAT 60.363 37.037 0.00 0.00 0.00 1.89
296 297 6.071952 GGAAAATCATGAAGAAGCACTGGTAA 60.072 38.462 0.00 0.00 0.00 2.85
297 298 5.415701 GGAAAATCATGAAGAAGCACTGGTA 59.584 40.000 0.00 0.00 0.00 3.25
298 299 4.219288 GGAAAATCATGAAGAAGCACTGGT 59.781 41.667 0.00 0.00 0.00 4.00
299 300 4.219070 TGGAAAATCATGAAGAAGCACTGG 59.781 41.667 0.00 0.00 0.00 4.00
300 301 5.048224 ACTGGAAAATCATGAAGAAGCACTG 60.048 40.000 0.00 0.00 0.00 3.66
301 302 5.048224 CACTGGAAAATCATGAAGAAGCACT 60.048 40.000 0.00 0.00 0.00 4.40
302 303 5.159209 CACTGGAAAATCATGAAGAAGCAC 58.841 41.667 0.00 0.00 0.00 4.40
303 304 4.321452 GCACTGGAAAATCATGAAGAAGCA 60.321 41.667 0.00 0.00 0.00 3.91
304 305 4.171754 GCACTGGAAAATCATGAAGAAGC 58.828 43.478 0.00 0.00 0.00 3.86
305 306 5.048224 AGTGCACTGGAAAATCATGAAGAAG 60.048 40.000 20.97 0.00 0.00 2.85
306 307 4.828939 AGTGCACTGGAAAATCATGAAGAA 59.171 37.500 20.97 0.00 0.00 2.52
307 308 4.401022 AGTGCACTGGAAAATCATGAAGA 58.599 39.130 20.97 0.00 0.00 2.87
308 309 4.778534 AGTGCACTGGAAAATCATGAAG 57.221 40.909 20.97 0.00 0.00 3.02
309 310 6.433716 TGATTAGTGCACTGGAAAATCATGAA 59.566 34.615 27.40 13.57 30.59 2.57
310 311 5.945191 TGATTAGTGCACTGGAAAATCATGA 59.055 36.000 27.40 13.45 30.59 3.07
311 312 6.032094 GTGATTAGTGCACTGGAAAATCATG 58.968 40.000 30.93 0.00 36.19 3.07
312 313 5.163723 CGTGATTAGTGCACTGGAAAATCAT 60.164 40.000 30.93 13.19 36.19 2.45
313 314 4.154015 CGTGATTAGTGCACTGGAAAATCA 59.846 41.667 27.40 27.40 34.18 2.57
314 315 4.437390 CCGTGATTAGTGCACTGGAAAATC 60.437 45.833 29.57 26.25 34.28 2.17
315 316 3.440173 CCGTGATTAGTGCACTGGAAAAT 59.560 43.478 29.57 19.85 34.28 1.82
316 317 2.811431 CCGTGATTAGTGCACTGGAAAA 59.189 45.455 29.57 15.76 34.28 2.29
317 318 2.224426 ACCGTGATTAGTGCACTGGAAA 60.224 45.455 29.57 16.14 35.45 3.13
318 319 1.346395 ACCGTGATTAGTGCACTGGAA 59.654 47.619 29.57 16.91 35.45 3.53
319 320 0.973632 ACCGTGATTAGTGCACTGGA 59.026 50.000 29.57 17.63 35.45 3.86
320 321 1.078709 CACCGTGATTAGTGCACTGG 58.921 55.000 29.57 21.67 36.61 4.00
326 327 2.805671 TCTGTTTGCACCGTGATTAGTG 59.194 45.455 1.65 0.00 37.05 2.74
327 328 3.120321 TCTGTTTGCACCGTGATTAGT 57.880 42.857 1.65 0.00 0.00 2.24
328 329 3.728864 GCATCTGTTTGCACCGTGATTAG 60.729 47.826 1.65 0.00 42.31 1.73
329 330 2.161410 GCATCTGTTTGCACCGTGATTA 59.839 45.455 1.65 0.00 42.31 1.75
330 331 1.068333 GCATCTGTTTGCACCGTGATT 60.068 47.619 1.65 0.00 42.31 2.57
331 332 0.523072 GCATCTGTTTGCACCGTGAT 59.477 50.000 1.65 0.00 42.31 3.06
332 333 1.948508 GCATCTGTTTGCACCGTGA 59.051 52.632 1.65 0.00 42.31 4.35
333 334 4.539152 GCATCTGTTTGCACCGTG 57.461 55.556 0.00 0.00 42.31 4.94
339 340 1.790623 CAAGCAGTTGCATCTGTTTGC 59.209 47.619 29.42 16.52 44.63 3.68
350 351 1.267806 CACTTACAGGGCAAGCAGTTG 59.732 52.381 0.00 0.00 36.67 3.16
351 352 1.609208 CACTTACAGGGCAAGCAGTT 58.391 50.000 0.00 0.00 0.00 3.16
352 353 0.890996 GCACTTACAGGGCAAGCAGT 60.891 55.000 0.00 0.00 45.95 4.40
353 354 1.878775 GCACTTACAGGGCAAGCAG 59.121 57.895 0.00 0.00 45.95 4.24
354 355 4.079446 GCACTTACAGGGCAAGCA 57.921 55.556 0.00 0.00 45.95 3.91
359 360 3.431725 GGCACGCACTTACAGGGC 61.432 66.667 0.00 0.00 42.41 5.19
360 361 2.746277 GGGCACGCACTTACAGGG 60.746 66.667 0.00 0.00 0.00 4.45
361 362 1.302511 AAGGGCACGCACTTACAGG 60.303 57.895 4.32 0.00 38.00 4.00
362 363 1.868997 CAAGGGCACGCACTTACAG 59.131 57.895 6.15 0.00 37.63 2.74
363 364 2.258013 GCAAGGGCACGCACTTACA 61.258 57.895 6.15 0.00 37.63 2.41
364 365 2.561373 GCAAGGGCACGCACTTAC 59.439 61.111 6.15 0.00 37.63 2.34
365 366 2.997952 TTCGCAAGGGCACGCACTTA 62.998 55.000 6.15 0.00 37.63 2.24
366 367 4.927782 TCGCAAGGGCACGCACTT 62.928 61.111 0.00 0.00 40.86 3.16
367 368 4.927782 TTCGCAAGGGCACGCACT 62.928 61.111 0.00 0.00 41.24 4.40
368 369 2.747507 AAATTCGCAAGGGCACGCAC 62.748 55.000 0.00 0.00 41.24 5.34
369 370 2.081425 AAAATTCGCAAGGGCACGCA 62.081 50.000 0.00 0.00 41.24 5.24
370 371 1.344226 GAAAATTCGCAAGGGCACGC 61.344 55.000 0.00 0.00 41.24 5.34
452 453 3.283751 TGTTCTCGGAAAAAGCCAAAGA 58.716 40.909 0.00 0.00 0.00 2.52
501 502 5.109210 CAGATTACAGGAGTATTTGTCGCA 58.891 41.667 0.00 0.00 0.00 5.10
502 503 5.109903 ACAGATTACAGGAGTATTTGTCGC 58.890 41.667 0.00 0.00 0.00 5.19
504 505 6.702282 GCCTACAGATTACAGGAGTATTTGTC 59.298 42.308 0.00 0.00 0.00 3.18
522 523 1.141881 CCGCTGGTAGTGCCTACAG 59.858 63.158 12.53 9.48 38.58 2.74
601 1868 3.241067 TGTAGTGATTACGGCTTGGAC 57.759 47.619 0.00 0.00 34.87 4.02
675 1948 2.866726 CGCTTTGGGTTGGGTTGGG 61.867 63.158 0.00 0.00 0.00 4.12
678 1951 3.230990 GCCGCTTTGGGTTGGGTT 61.231 61.111 0.00 0.00 38.63 4.11
715 1994 2.973899 GGTGCCTGCTTCTCTCGA 59.026 61.111 0.00 0.00 0.00 4.04
751 2030 3.636231 TGGAGGGTTCGGGTGCAG 61.636 66.667 0.00 0.00 0.00 4.41
866 2149 5.195940 GAGTTGAATTGATGATGGAAGGGA 58.804 41.667 0.00 0.00 0.00 4.20
935 2218 4.985409 GTGACTGATCGAGTTGTTCTTTCT 59.015 41.667 0.00 0.00 33.83 2.52
1322 2872 3.056250 CAGAGTGGTAAGTGACTGCTCAT 60.056 47.826 0.00 0.00 33.88 2.90
1472 3910 0.833949 CTTCTCCTCCCCCTTGTAGC 59.166 60.000 0.00 0.00 0.00 3.58
1599 4037 1.711206 GCTGGGAGTCGTTGAAGTAC 58.289 55.000 0.00 0.00 0.00 2.73
1653 4091 2.003196 TTATGCGCATGACGTTGAGA 57.997 45.000 32.48 6.36 46.11 3.27
2448 4887 0.320697 GCTGGTTGTCCGAGTAGGTT 59.679 55.000 0.00 0.00 41.99 3.50
2574 5014 2.291043 GGTCACCGTGATCTGGGGT 61.291 63.158 4.13 2.47 33.37 4.95
3134 5584 0.381801 CCACAGGCAACAGAACACAC 59.618 55.000 0.00 0.00 41.41 3.82
3161 5628 2.821378 TCCTCGTTATTCGACAGAACCA 59.179 45.455 0.00 0.00 44.01 3.67
3162 5629 3.177487 GTCCTCGTTATTCGACAGAACC 58.823 50.000 0.00 0.00 44.01 3.62
3163 5630 2.844804 CGTCCTCGTTATTCGACAGAAC 59.155 50.000 0.00 0.00 44.01 3.01
3183 5650 9.244799 TCATTAATAACTACACTCATACAAGCG 57.755 33.333 0.00 0.00 0.00 4.68
3285 5762 6.560253 ACTCAGGCAAAAACAACATAGTAG 57.440 37.500 0.00 0.00 0.00 2.57
3286 5763 6.544197 TGAACTCAGGCAAAAACAACATAGTA 59.456 34.615 0.00 0.00 0.00 1.82
3287 5764 5.359576 TGAACTCAGGCAAAAACAACATAGT 59.640 36.000 0.00 0.00 0.00 2.12
3320 5799 8.241367 GGTAATCAAGGACAACGAACATATTTT 58.759 33.333 0.00 0.00 0.00 1.82
3358 5844 3.562343 TGTGGTAATATAAAGCGGGCA 57.438 42.857 0.00 0.00 0.00 5.36
3359 5845 4.096682 TGTTTGTGGTAATATAAAGCGGGC 59.903 41.667 0.00 0.00 0.00 6.13
3371 5857 8.608844 AAAAATTTGTGAACTGTTTGTGGTAA 57.391 26.923 0.00 0.00 0.00 2.85
3386 5872 9.407514 CGAACTCACACATTTTAAAAATTTGTG 57.592 29.630 22.62 22.62 0.00 3.33
3396 5882 8.918961 AACATTTTTCGAACTCACACATTTTA 57.081 26.923 0.00 0.00 0.00 1.52
3397 5883 7.543868 TGAACATTTTTCGAACTCACACATTTT 59.456 29.630 0.00 0.00 0.00 1.82
3398 5884 7.009174 GTGAACATTTTTCGAACTCACACATTT 59.991 33.333 0.00 0.00 33.54 2.32
3399 5885 6.472163 GTGAACATTTTTCGAACTCACACATT 59.528 34.615 0.00 0.00 33.54 2.71
3400 5886 5.971202 GTGAACATTTTTCGAACTCACACAT 59.029 36.000 0.00 0.00 33.54 3.21
3401 5887 5.328691 GTGAACATTTTTCGAACTCACACA 58.671 37.500 0.00 0.00 33.54 3.72
3402 5888 4.733405 GGTGAACATTTTTCGAACTCACAC 59.267 41.667 0.00 2.74 34.71 3.82
3403 5889 4.396478 TGGTGAACATTTTTCGAACTCACA 59.604 37.500 0.00 0.00 34.71 3.58
3404 5890 4.915704 TGGTGAACATTTTTCGAACTCAC 58.084 39.130 0.00 4.48 0.00 3.51
3405 5891 5.568685 TTGGTGAACATTTTTCGAACTCA 57.431 34.783 0.00 0.00 0.00 3.41
3406 5892 7.463469 AAATTGGTGAACATTTTTCGAACTC 57.537 32.000 0.00 0.00 30.69 3.01
3407 5893 7.841915 AAAATTGGTGAACATTTTTCGAACT 57.158 28.000 0.00 0.00 37.85 3.01
3442 5928 9.057089 AGATTCACGAACTTTCTTCAAATAGTT 57.943 29.630 0.00 0.00 33.78 2.24
3645 6153 8.996024 TTTTCCCTTTTCTAGTTTCTGTTTTG 57.004 30.769 0.00 0.00 0.00 2.44
3667 6175 9.586435 TGTTTGTTTGGTTTGTTTTTCATTTTT 57.414 22.222 0.00 0.00 0.00 1.94
3672 6181 8.860128 GTTTTTGTTTGTTTGGTTTGTTTTTCA 58.140 25.926 0.00 0.00 0.00 2.69
3687 6196 3.991367 TGTTTCACCGGTTTTTGTTTGT 58.009 36.364 2.97 0.00 0.00 2.83
3688 6197 6.648725 TTATGTTTCACCGGTTTTTGTTTG 57.351 33.333 2.97 0.00 0.00 2.93
3709 6218 6.204882 GCTGGCTGTTTTCTTTCTCTAGTTTA 59.795 38.462 0.00 0.00 0.00 2.01
3722 6231 2.350484 GGTTTACTCGCTGGCTGTTTTC 60.350 50.000 0.00 0.00 0.00 2.29
3724 6233 1.235724 GGTTTACTCGCTGGCTGTTT 58.764 50.000 0.00 0.00 0.00 2.83
3727 6236 0.669318 TTCGGTTTACTCGCTGGCTG 60.669 55.000 0.00 0.00 0.00 4.85
3728 6237 0.034337 TTTCGGTTTACTCGCTGGCT 59.966 50.000 0.00 0.00 0.00 4.75
3729 6238 0.869730 TTTTCGGTTTACTCGCTGGC 59.130 50.000 0.00 0.00 0.00 4.85
3730 6239 2.803956 TCTTTTTCGGTTTACTCGCTGG 59.196 45.455 0.00 0.00 0.00 4.85
3731 6240 4.461992 TTCTTTTTCGGTTTACTCGCTG 57.538 40.909 0.00 0.00 0.00 5.18
3732 6241 5.350640 CCTATTCTTTTTCGGTTTACTCGCT 59.649 40.000 0.00 0.00 0.00 4.93
3733 6242 5.349543 TCCTATTCTTTTTCGGTTTACTCGC 59.650 40.000 0.00 0.00 0.00 5.03
3734 6243 6.956299 TCCTATTCTTTTTCGGTTTACTCG 57.044 37.500 0.00 0.00 0.00 4.18
3767 6279 3.118775 GGTTTTGTGGAACTTCTGCCTTT 60.119 43.478 0.00 0.00 38.04 3.11
3769 6281 2.031870 GGTTTTGTGGAACTTCTGCCT 58.968 47.619 0.00 0.00 38.04 4.75
3800 6312 3.886505 ACCTGTTCATTTTAACGGAAGCA 59.113 39.130 0.00 0.00 37.86 3.91
3805 6317 3.305110 GCACACCTGTTCATTTTAACGG 58.695 45.455 0.00 0.00 35.82 4.44
3807 6319 2.724174 GCGCACACCTGTTCATTTTAAC 59.276 45.455 0.30 0.00 0.00 2.01
3809 6321 1.268352 GGCGCACACCTGTTCATTTTA 59.732 47.619 10.83 0.00 0.00 1.52
3814 6326 2.124529 TTGGCGCACACCTGTTCA 60.125 55.556 10.83 0.00 0.00 3.18
3821 6333 0.596082 ATTTGGTAGTTGGCGCACAC 59.404 50.000 10.83 4.64 0.00 3.82
3822 6334 2.080693 CTATTTGGTAGTTGGCGCACA 58.919 47.619 10.83 1.22 0.00 4.57
3823 6335 1.202143 GCTATTTGGTAGTTGGCGCAC 60.202 52.381 10.83 0.00 32.72 5.34
3824 6336 1.091537 GCTATTTGGTAGTTGGCGCA 58.908 50.000 10.83 0.00 32.72 6.09
3825 6337 0.380733 GGCTATTTGGTAGTTGGCGC 59.619 55.000 0.00 0.00 32.72 6.53
3826 6338 2.038387 AGGCTATTTGGTAGTTGGCG 57.962 50.000 0.00 0.00 32.72 5.69
3827 6339 4.801330 AAAAGGCTATTTGGTAGTTGGC 57.199 40.909 0.00 0.00 32.72 4.52
3828 6340 7.393515 AGAGTTAAAAGGCTATTTGGTAGTTGG 59.606 37.037 0.00 0.00 32.72 3.77
3829 6341 8.336801 AGAGTTAAAAGGCTATTTGGTAGTTG 57.663 34.615 0.00 0.00 32.72 3.16
3830 6342 8.935614 AAGAGTTAAAAGGCTATTTGGTAGTT 57.064 30.769 0.00 0.00 32.72 2.24
3831 6343 8.935614 AAAGAGTTAAAAGGCTATTTGGTAGT 57.064 30.769 0.00 0.00 32.72 2.73
3834 6346 9.363401 AGTTAAAGAGTTAAAAGGCTATTTGGT 57.637 29.630 0.00 0.00 31.02 3.67
3835 6347 9.841880 GAGTTAAAGAGTTAAAAGGCTATTTGG 57.158 33.333 0.00 0.00 31.02 3.28
3836 6348 9.543018 CGAGTTAAAGAGTTAAAAGGCTATTTG 57.457 33.333 0.00 0.00 31.02 2.32
3837 6349 8.235226 GCGAGTTAAAGAGTTAAAAGGCTATTT 58.765 33.333 0.00 0.00 31.02 1.40
3838 6350 7.412672 CGCGAGTTAAAGAGTTAAAAGGCTATT 60.413 37.037 0.00 0.00 31.02 1.73
3839 6351 6.035758 CGCGAGTTAAAGAGTTAAAAGGCTAT 59.964 38.462 0.00 0.00 31.02 2.97
3840 6352 5.346822 CGCGAGTTAAAGAGTTAAAAGGCTA 59.653 40.000 0.00 0.00 31.02 3.93
3841 6353 4.151867 CGCGAGTTAAAGAGTTAAAAGGCT 59.848 41.667 0.00 0.00 31.02 4.58
3842 6354 4.392216 CGCGAGTTAAAGAGTTAAAAGGC 58.608 43.478 0.00 0.00 31.02 4.35
3843 6355 4.392216 GCGCGAGTTAAAGAGTTAAAAGG 58.608 43.478 12.10 0.00 31.02 3.11
3844 6356 4.151867 AGGCGCGAGTTAAAGAGTTAAAAG 59.848 41.667 12.10 0.00 31.02 2.27
3845 6357 4.060205 AGGCGCGAGTTAAAGAGTTAAAA 58.940 39.130 12.10 0.00 31.02 1.52
3846 6358 3.656559 AGGCGCGAGTTAAAGAGTTAAA 58.343 40.909 12.10 0.00 31.02 1.52
3847 6359 3.308438 AGGCGCGAGTTAAAGAGTTAA 57.692 42.857 12.10 0.00 0.00 2.01
3848 6360 2.991190 CAAGGCGCGAGTTAAAGAGTTA 59.009 45.455 12.10 0.00 0.00 2.24
3849 6361 1.798813 CAAGGCGCGAGTTAAAGAGTT 59.201 47.619 12.10 0.00 0.00 3.01
3850 6362 1.000506 TCAAGGCGCGAGTTAAAGAGT 59.999 47.619 12.10 0.00 0.00 3.24
3851 6363 1.656095 CTCAAGGCGCGAGTTAAAGAG 59.344 52.381 12.10 2.96 0.00 2.85
3852 6364 1.000506 ACTCAAGGCGCGAGTTAAAGA 59.999 47.619 12.10 0.00 40.89 2.52
3853 6365 1.126846 CACTCAAGGCGCGAGTTAAAG 59.873 52.381 12.10 5.66 41.80 1.85
3854 6366 1.144969 CACTCAAGGCGCGAGTTAAA 58.855 50.000 12.10 0.00 41.80 1.52
3855 6367 0.032952 ACACTCAAGGCGCGAGTTAA 59.967 50.000 12.10 0.00 41.80 2.01
3856 6368 0.388134 GACACTCAAGGCGCGAGTTA 60.388 55.000 12.10 0.00 41.80 2.24
3857 6369 1.664965 GACACTCAAGGCGCGAGTT 60.665 57.895 12.10 0.00 41.80 3.01
3858 6370 2.049063 GACACTCAAGGCGCGAGT 60.049 61.111 12.10 10.21 44.55 4.18
3859 6371 1.221466 TTTGACACTCAAGGCGCGAG 61.221 55.000 12.10 8.96 37.70 5.03
3860 6372 0.602638 ATTTGACACTCAAGGCGCGA 60.603 50.000 12.10 0.00 37.70 5.87
3861 6373 1.061131 CTATTTGACACTCAAGGCGCG 59.939 52.381 0.00 0.00 37.70 6.86
3862 6374 1.398390 CCTATTTGACACTCAAGGCGC 59.602 52.381 0.00 0.00 37.70 6.53
3863 6375 2.972625 TCCTATTTGACACTCAAGGCG 58.027 47.619 0.00 0.00 37.70 5.52
3864 6376 4.154918 CAGTTCCTATTTGACACTCAAGGC 59.845 45.833 0.00 0.00 37.70 4.35
3865 6377 5.409826 GTCAGTTCCTATTTGACACTCAAGG 59.590 44.000 0.00 0.00 40.62 3.61
3866 6378 5.991606 TGTCAGTTCCTATTTGACACTCAAG 59.008 40.000 2.68 0.00 44.39 3.02
3867 6379 5.924356 TGTCAGTTCCTATTTGACACTCAA 58.076 37.500 2.68 0.00 44.39 3.02
3868 6380 5.545063 TGTCAGTTCCTATTTGACACTCA 57.455 39.130 2.68 0.00 44.39 3.41
3877 6389 9.726438 GCCTTTACATATATGTCAGTTCCTATT 57.274 33.333 21.49 0.00 41.97 1.73
3878 6390 9.105844 AGCCTTTACATATATGTCAGTTCCTAT 57.894 33.333 21.49 0.00 41.97 2.57
3879 6391 8.492415 AGCCTTTACATATATGTCAGTTCCTA 57.508 34.615 21.49 0.00 41.97 2.94
3880 6392 7.380423 AGCCTTTACATATATGTCAGTTCCT 57.620 36.000 21.49 9.64 41.97 3.36
3881 6393 9.726438 ATTAGCCTTTACATATATGTCAGTTCC 57.274 33.333 21.49 7.70 41.97 3.62
3884 6396 9.507329 CCAATTAGCCTTTACATATATGTCAGT 57.493 33.333 21.49 7.30 41.97 3.41
3885 6397 9.507329 ACCAATTAGCCTTTACATATATGTCAG 57.493 33.333 21.49 17.22 41.97 3.51
3886 6398 9.860650 AACCAATTAGCCTTTACATATATGTCA 57.139 29.630 21.49 8.67 41.97 3.58
3892 6404 8.143835 GCATCAAACCAATTAGCCTTTACATAT 58.856 33.333 0.00 0.00 0.00 1.78
3893 6405 7.341769 AGCATCAAACCAATTAGCCTTTACATA 59.658 33.333 0.00 0.00 0.00 2.29
3894 6406 6.155049 AGCATCAAACCAATTAGCCTTTACAT 59.845 34.615 0.00 0.00 0.00 2.29
3895 6407 5.480073 AGCATCAAACCAATTAGCCTTTACA 59.520 36.000 0.00 0.00 0.00 2.41
3896 6408 5.965922 AGCATCAAACCAATTAGCCTTTAC 58.034 37.500 0.00 0.00 0.00 2.01
3897 6409 7.710676 TTAGCATCAAACCAATTAGCCTTTA 57.289 32.000 0.00 0.00 0.00 1.85
3898 6410 6.603940 TTAGCATCAAACCAATTAGCCTTT 57.396 33.333 0.00 0.00 0.00 3.11
3899 6411 6.603940 TTTAGCATCAAACCAATTAGCCTT 57.396 33.333 0.00 0.00 0.00 4.35
3900 6412 6.211384 ACTTTTAGCATCAAACCAATTAGCCT 59.789 34.615 0.00 0.00 0.00 4.58
3901 6413 6.398095 ACTTTTAGCATCAAACCAATTAGCC 58.602 36.000 0.00 0.00 0.00 3.93
3902 6414 7.889589 AACTTTTAGCATCAAACCAATTAGC 57.110 32.000 0.00 0.00 0.00 3.09
3905 6417 9.777297 ATGTTAACTTTTAGCATCAAACCAATT 57.223 25.926 7.22 0.00 0.00 2.32
3906 6418 9.777297 AATGTTAACTTTTAGCATCAAACCAAT 57.223 25.926 7.22 0.00 0.00 3.16
3907 6419 9.255304 GAATGTTAACTTTTAGCATCAAACCAA 57.745 29.630 7.22 0.00 0.00 3.67
3908 6420 8.637986 AGAATGTTAACTTTTAGCATCAAACCA 58.362 29.630 7.22 0.00 0.00 3.67
3925 6437 9.255304 GGCAGTTGTCAAATTTTAGAATGTTAA 57.745 29.630 0.00 0.00 0.00 2.01
3926 6438 8.417106 TGGCAGTTGTCAAATTTTAGAATGTTA 58.583 29.630 0.00 0.00 0.00 2.41
3927 6439 7.271511 TGGCAGTTGTCAAATTTTAGAATGTT 58.728 30.769 0.00 0.00 0.00 2.71
3928 6440 6.815089 TGGCAGTTGTCAAATTTTAGAATGT 58.185 32.000 0.00 0.00 0.00 2.71
3929 6441 7.712264 TTGGCAGTTGTCAAATTTTAGAATG 57.288 32.000 0.00 0.00 36.61 2.67
3940 6452 3.176552 CCAACATTTGGCAGTTGTCAA 57.823 42.857 14.57 0.00 45.17 3.18
3941 6453 2.886862 CCAACATTTGGCAGTTGTCA 57.113 45.000 14.57 0.00 45.17 3.58
3951 6463 5.106987 GCAACCAATCTTTAGCCAACATTTG 60.107 40.000 0.00 0.00 0.00 2.32
3952 6464 4.996758 GCAACCAATCTTTAGCCAACATTT 59.003 37.500 0.00 0.00 0.00 2.32
3953 6465 4.040217 TGCAACCAATCTTTAGCCAACATT 59.960 37.500 0.00 0.00 0.00 2.71
3954 6466 3.577848 TGCAACCAATCTTTAGCCAACAT 59.422 39.130 0.00 0.00 0.00 2.71
3955 6467 2.961741 TGCAACCAATCTTTAGCCAACA 59.038 40.909 0.00 0.00 0.00 3.33
3956 6468 3.658757 TGCAACCAATCTTTAGCCAAC 57.341 42.857 0.00 0.00 0.00 3.77
3957 6469 6.154192 TGAATATGCAACCAATCTTTAGCCAA 59.846 34.615 0.00 0.00 0.00 4.52
3958 6470 5.655974 TGAATATGCAACCAATCTTTAGCCA 59.344 36.000 0.00 0.00 0.00 4.75
3959 6471 6.147864 TGAATATGCAACCAATCTTTAGCC 57.852 37.500 0.00 0.00 0.00 3.93
3960 6472 8.652810 AAATGAATATGCAACCAATCTTTAGC 57.347 30.769 0.00 0.00 0.00 3.09
3962 6474 9.299963 CGAAAATGAATATGCAACCAATCTTTA 57.700 29.630 0.00 0.00 0.00 1.85
3963 6475 7.818930 ACGAAAATGAATATGCAACCAATCTTT 59.181 29.630 0.00 0.00 0.00 2.52
3964 6476 7.322664 ACGAAAATGAATATGCAACCAATCTT 58.677 30.769 0.00 0.00 0.00 2.40
3965 6477 6.866480 ACGAAAATGAATATGCAACCAATCT 58.134 32.000 0.00 0.00 0.00 2.40
3966 6478 7.393327 CAACGAAAATGAATATGCAACCAATC 58.607 34.615 0.00 0.00 0.00 2.67
3967 6479 6.183360 GCAACGAAAATGAATATGCAACCAAT 60.183 34.615 0.00 0.00 32.80 3.16
3968 6480 5.119898 GCAACGAAAATGAATATGCAACCAA 59.880 36.000 0.00 0.00 32.80 3.67
3969 6481 4.624882 GCAACGAAAATGAATATGCAACCA 59.375 37.500 0.00 0.00 32.80 3.67
3970 6482 4.032786 GGCAACGAAAATGAATATGCAACC 59.967 41.667 0.00 0.00 34.14 3.77
3971 6483 4.624882 TGGCAACGAAAATGAATATGCAAC 59.375 37.500 0.00 0.00 42.51 4.17
3972 6484 4.814147 TGGCAACGAAAATGAATATGCAA 58.186 34.783 0.00 0.00 42.51 4.08
3973 6485 4.446994 TGGCAACGAAAATGAATATGCA 57.553 36.364 0.00 0.00 42.51 3.96
3974 6486 5.750067 AGATTGGCAACGAAAATGAATATGC 59.250 36.000 0.00 0.00 42.51 3.14
3975 6487 7.760131 AAGATTGGCAACGAAAATGAATATG 57.240 32.000 0.00 0.00 42.51 1.78
3976 6488 8.465999 TGTAAGATTGGCAACGAAAATGAATAT 58.534 29.630 0.00 0.00 42.51 1.28
3977 6489 7.821652 TGTAAGATTGGCAACGAAAATGAATA 58.178 30.769 0.00 0.00 42.51 1.75
3978 6490 6.686630 TGTAAGATTGGCAACGAAAATGAAT 58.313 32.000 0.00 0.00 42.51 2.57
3979 6491 6.078202 TGTAAGATTGGCAACGAAAATGAA 57.922 33.333 0.00 0.00 42.51 2.57
3980 6492 5.697473 TGTAAGATTGGCAACGAAAATGA 57.303 34.783 0.00 0.00 42.51 2.57
3981 6493 6.761731 TTTGTAAGATTGGCAACGAAAATG 57.238 33.333 0.00 0.00 42.51 2.32
3982 6494 7.778470 TTTTTGTAAGATTGGCAACGAAAAT 57.222 28.000 0.00 0.00 42.51 1.82
4025 6537 5.759273 TGCAAAATCAAAAGTAGCAAGCATT 59.241 32.000 0.00 0.00 0.00 3.56
4026 6538 5.299148 TGCAAAATCAAAAGTAGCAAGCAT 58.701 33.333 0.00 0.00 0.00 3.79
4027 6539 4.691175 TGCAAAATCAAAAGTAGCAAGCA 58.309 34.783 0.00 0.00 0.00 3.91
4028 6540 5.655893 TTGCAAAATCAAAAGTAGCAAGC 57.344 34.783 0.00 0.00 35.81 4.01
4046 6558 7.986320 ACTATTTGGCATTGCTAATATTTTGCA 59.014 29.630 8.34 10.50 34.69 4.08
4047 6559 8.277713 CACTATTTGGCATTGCTAATATTTTGC 58.722 33.333 8.34 0.00 0.00 3.68
4048 6560 8.767085 CCACTATTTGGCATTGCTAATATTTTG 58.233 33.333 8.34 9.42 39.07 2.44
4049 6561 8.891671 CCACTATTTGGCATTGCTAATATTTT 57.108 30.769 8.34 0.00 39.07 1.82
4073 6585 4.805192 TCGATAATACGTTGGTTTGCTACC 59.195 41.667 0.00 2.04 39.68 3.18
4074 6586 5.954434 TCGATAATACGTTGGTTTGCTAC 57.046 39.130 0.00 0.00 34.70 3.58
4075 6587 6.757478 TCATTCGATAATACGTTGGTTTGCTA 59.243 34.615 0.00 0.00 34.70 3.49
4076 6588 5.583061 TCATTCGATAATACGTTGGTTTGCT 59.417 36.000 0.00 0.00 34.70 3.91
4077 6589 5.802064 TCATTCGATAATACGTTGGTTTGC 58.198 37.500 0.00 0.00 34.70 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.