Multiple sequence alignment - TraesCS4D01G206300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G206300 chr4D 100.000 2703 0 0 1 2703 354035699 354038401 0.000000e+00 4992.0
1 TraesCS4D01G206300 chr4D 89.888 178 18 0 1 178 480860595 480860418 2.090000e-56 230.0
2 TraesCS4D01G206300 chr4D 89.888 178 18 0 1 178 480869386 480869209 2.090000e-56 230.0
3 TraesCS4D01G206300 chr4D 81.545 233 34 8 1880 2105 500680806 500680576 1.650000e-42 183.0
4 TraesCS4D01G206300 chr4B 89.844 2570 137 51 179 2703 437747007 437749497 0.000000e+00 3186.0
5 TraesCS4D01G206300 chr4B 81.553 206 35 3 1901 2104 152242162 152242366 1.660000e-37 167.0
6 TraesCS4D01G206300 chr4A 94.182 1839 81 13 878 2703 110910417 110908592 0.000000e+00 2780.0
7 TraesCS4D01G206300 chr4A 91.324 680 36 12 184 845 110911087 110910413 0.000000e+00 907.0
8 TraesCS4D01G206300 chr4A 87.500 56 5 2 273 326 680563017 680563072 2.250000e-06 63.9
9 TraesCS4D01G206300 chr2D 89.106 716 58 16 993 1700 73820096 73819393 0.000000e+00 872.0
10 TraesCS4D01G206300 chr2D 91.787 621 50 1 1099 1719 323561477 323562096 0.000000e+00 863.0
11 TraesCS4D01G206300 chr2D 92.308 598 46 0 1109 1706 323516937 323516340 0.000000e+00 850.0
12 TraesCS4D01G206300 chr2B 88.842 717 65 12 993 1700 111669411 111668701 0.000000e+00 867.0
13 TraesCS4D01G206300 chr2B 82.906 234 33 6 1877 2105 24848037 24848268 1.270000e-48 204.0
14 TraesCS4D01G206300 chr2B 81.553 206 35 3 1901 2104 364799313 364799109 1.660000e-37 167.0
15 TraesCS4D01G206300 chr2B 81.176 85 16 0 244 328 759736803 759736719 4.830000e-08 69.4
16 TraesCS4D01G206300 chr2A 87.450 749 82 10 980 1719 407092488 407091743 0.000000e+00 852.0
17 TraesCS4D01G206300 chr2A 87.316 749 83 10 980 1719 406964312 406963567 0.000000e+00 846.0
18 TraesCS4D01G206300 chr2A 95.122 41 2 0 289 329 115442230 115442270 6.250000e-07 65.8
19 TraesCS4D01G206300 chr3A 88.800 250 20 3 273 516 744052803 744052556 1.570000e-77 300.0
20 TraesCS4D01G206300 chr3A 80.702 114 17 4 2587 2697 4000281 4000170 1.720000e-12 84.2
21 TraesCS4D01G206300 chr7D 93.258 178 12 0 1 178 71839479 71839302 2.060000e-66 263.0
22 TraesCS4D01G206300 chr6D 89.888 178 18 0 1 178 456385453 456385630 2.090000e-56 230.0
23 TraesCS4D01G206300 chr1D 84.211 228 32 4 1880 2105 82333087 82332862 4.530000e-53 219.0
24 TraesCS4D01G206300 chr6A 87.640 178 22 0 1 178 90208467 90208644 9.810000e-50 207.0
25 TraesCS4D01G206300 chr6A 86.207 174 24 0 4 177 300974542 300974369 3.550000e-44 189.0
26 TraesCS4D01G206300 chr6A 82.203 118 20 1 2587 2703 355818749 355818632 1.710000e-17 100.0
27 TraesCS4D01G206300 chr3D 87.778 180 18 3 1 179 481922434 481922258 9.810000e-50 207.0
28 TraesCS4D01G206300 chr5D 79.498 239 38 10 1880 2110 545284759 545284524 2.790000e-35 159.0
29 TraesCS4D01G206300 chr5B 81.081 148 24 3 2559 2703 382067186 382067332 6.120000e-22 115.0
30 TraesCS4D01G206300 chr7A 82.203 118 20 1 2587 2703 506334061 506333944 1.710000e-17 100.0
31 TraesCS4D01G206300 chr7A 80.952 105 19 1 2589 2692 421346172 421346276 6.200000e-12 82.4
32 TraesCS4D01G206300 chr7B 82.569 109 18 1 2587 2694 628538927 628539035 7.970000e-16 95.3
33 TraesCS4D01G206300 chr7B 83.146 89 14 1 244 331 717331825 717331913 2.230000e-11 80.5
34 TraesCS4D01G206300 chr6B 85.714 63 9 0 258 320 716141992 716141930 1.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G206300 chr4D 354035699 354038401 2702 False 4992.0 4992 100.000 1 2703 1 chr4D.!!$F1 2702
1 TraesCS4D01G206300 chr4B 437747007 437749497 2490 False 3186.0 3186 89.844 179 2703 1 chr4B.!!$F2 2524
2 TraesCS4D01G206300 chr4A 110908592 110911087 2495 True 1843.5 2780 92.753 184 2703 2 chr4A.!!$R1 2519
3 TraesCS4D01G206300 chr2D 73819393 73820096 703 True 872.0 872 89.106 993 1700 1 chr2D.!!$R1 707
4 TraesCS4D01G206300 chr2D 323561477 323562096 619 False 863.0 863 91.787 1099 1719 1 chr2D.!!$F1 620
5 TraesCS4D01G206300 chr2D 323516340 323516937 597 True 850.0 850 92.308 1109 1706 1 chr2D.!!$R2 597
6 TraesCS4D01G206300 chr2B 111668701 111669411 710 True 867.0 867 88.842 993 1700 1 chr2B.!!$R1 707
7 TraesCS4D01G206300 chr2A 407091743 407092488 745 True 852.0 852 87.450 980 1719 1 chr2A.!!$R2 739
8 TraesCS4D01G206300 chr2A 406963567 406964312 745 True 846.0 846 87.316 980 1719 1 chr2A.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 939 0.033504 GTGCCTCCGTGTCTTCTCAA 59.966 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2603 2690 0.475632 ATCCCTCCCAAGTGTGTGGA 60.476 55.0 0.0 0.0 41.65 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.899393 CTGAGAGATAGGTTCTAGCTTGAT 57.101 41.667 0.00 0.00 33.74 2.57
24 25 6.647334 TGAGAGATAGGTTCTAGCTTGATG 57.353 41.667 0.00 0.00 33.74 3.07
25 26 6.132658 TGAGAGATAGGTTCTAGCTTGATGT 58.867 40.000 0.00 0.00 33.74 3.06
26 27 7.290813 TGAGAGATAGGTTCTAGCTTGATGTA 58.709 38.462 0.00 0.00 33.74 2.29
27 28 7.947332 TGAGAGATAGGTTCTAGCTTGATGTAT 59.053 37.037 0.00 0.00 33.74 2.29
28 29 8.719645 AGAGATAGGTTCTAGCTTGATGTATT 57.280 34.615 0.00 0.00 33.74 1.89
29 30 8.584157 AGAGATAGGTTCTAGCTTGATGTATTG 58.416 37.037 0.00 0.00 33.74 1.90
30 31 8.484214 AGATAGGTTCTAGCTTGATGTATTGA 57.516 34.615 0.00 0.00 30.96 2.57
31 32 8.584157 AGATAGGTTCTAGCTTGATGTATTGAG 58.416 37.037 0.00 0.00 30.96 3.02
32 33 5.923204 AGGTTCTAGCTTGATGTATTGAGG 58.077 41.667 0.00 0.00 0.00 3.86
33 34 5.663106 AGGTTCTAGCTTGATGTATTGAGGA 59.337 40.000 0.00 0.00 0.00 3.71
34 35 5.755861 GGTTCTAGCTTGATGTATTGAGGAC 59.244 44.000 0.00 0.00 0.00 3.85
35 36 5.188327 TCTAGCTTGATGTATTGAGGACG 57.812 43.478 0.00 0.00 0.00 4.79
36 37 4.887655 TCTAGCTTGATGTATTGAGGACGA 59.112 41.667 0.00 0.00 0.00 4.20
37 38 4.052159 AGCTTGATGTATTGAGGACGAG 57.948 45.455 0.00 0.00 0.00 4.18
38 39 2.541762 GCTTGATGTATTGAGGACGAGC 59.458 50.000 0.00 0.00 0.00 5.03
39 40 3.785486 CTTGATGTATTGAGGACGAGCA 58.215 45.455 0.00 0.00 0.00 4.26
40 41 3.443099 TGATGTATTGAGGACGAGCAG 57.557 47.619 0.00 0.00 0.00 4.24
41 42 2.131183 GATGTATTGAGGACGAGCAGC 58.869 52.381 0.00 0.00 0.00 5.25
42 43 0.175760 TGTATTGAGGACGAGCAGCC 59.824 55.000 0.00 0.00 0.00 4.85
43 44 0.530870 GTATTGAGGACGAGCAGCCC 60.531 60.000 0.00 0.00 0.00 5.19
44 45 1.686325 TATTGAGGACGAGCAGCCCC 61.686 60.000 0.00 0.00 0.00 5.80
45 46 4.704103 TGAGGACGAGCAGCCCCT 62.704 66.667 0.00 0.00 0.00 4.79
46 47 2.442272 GAGGACGAGCAGCCCCTA 60.442 66.667 0.00 0.00 0.00 3.53
47 48 2.760385 AGGACGAGCAGCCCCTAC 60.760 66.667 0.00 0.00 0.00 3.18
48 49 3.851128 GGACGAGCAGCCCCTACC 61.851 72.222 0.00 0.00 0.00 3.18
49 50 3.851128 GACGAGCAGCCCCTACCC 61.851 72.222 0.00 0.00 0.00 3.69
50 51 4.400251 ACGAGCAGCCCCTACCCT 62.400 66.667 0.00 0.00 0.00 4.34
51 52 2.123425 CGAGCAGCCCCTACCCTA 60.123 66.667 0.00 0.00 0.00 3.53
52 53 1.760875 CGAGCAGCCCCTACCCTAA 60.761 63.158 0.00 0.00 0.00 2.69
53 54 1.830836 GAGCAGCCCCTACCCTAAC 59.169 63.158 0.00 0.00 0.00 2.34
54 55 0.691413 GAGCAGCCCCTACCCTAACT 60.691 60.000 0.00 0.00 0.00 2.24
55 56 0.983378 AGCAGCCCCTACCCTAACTG 60.983 60.000 0.00 0.00 0.00 3.16
56 57 1.527370 CAGCCCCTACCCTAACTGC 59.473 63.158 0.00 0.00 0.00 4.40
57 58 0.983378 CAGCCCCTACCCTAACTGCT 60.983 60.000 0.00 0.00 0.00 4.24
58 59 0.691413 AGCCCCTACCCTAACTGCTC 60.691 60.000 0.00 0.00 0.00 4.26
59 60 1.697082 GCCCCTACCCTAACTGCTCC 61.697 65.000 0.00 0.00 0.00 4.70
60 61 0.326238 CCCCTACCCTAACTGCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
61 62 1.123928 CCCTACCCTAACTGCTCCAG 58.876 60.000 0.00 0.00 37.52 3.86
62 63 0.466124 CCTACCCTAACTGCTCCAGC 59.534 60.000 0.00 0.00 42.50 4.85
63 64 1.490574 CTACCCTAACTGCTCCAGCT 58.509 55.000 0.00 0.00 42.66 4.24
64 65 2.667470 CTACCCTAACTGCTCCAGCTA 58.333 52.381 0.00 0.00 42.66 3.32
65 66 1.196012 ACCCTAACTGCTCCAGCTAC 58.804 55.000 0.00 0.00 42.66 3.58
66 67 1.273324 ACCCTAACTGCTCCAGCTACT 60.273 52.381 0.00 0.00 42.66 2.57
67 68 1.834263 CCCTAACTGCTCCAGCTACTT 59.166 52.381 0.00 0.00 42.66 2.24
68 69 2.419297 CCCTAACTGCTCCAGCTACTTG 60.419 54.545 0.00 0.00 42.66 3.16
69 70 2.497675 CCTAACTGCTCCAGCTACTTGA 59.502 50.000 0.00 0.00 42.66 3.02
70 71 2.758736 AACTGCTCCAGCTACTTGAG 57.241 50.000 0.00 0.00 42.66 3.02
88 89 4.728102 CCCGCGCCGACTTGTGTA 62.728 66.667 0.00 0.00 0.00 2.90
89 90 3.475774 CCGCGCCGACTTGTGTAC 61.476 66.667 0.00 0.00 0.00 2.90
90 91 3.823421 CGCGCCGACTTGTGTACG 61.823 66.667 0.00 0.00 0.00 3.67
91 92 4.130281 GCGCCGACTTGTGTACGC 62.130 66.667 0.00 0.00 36.47 4.42
92 93 3.823421 CGCCGACTTGTGTACGCG 61.823 66.667 3.53 3.53 37.42 6.01
93 94 2.732094 GCCGACTTGTGTACGCGT 60.732 61.111 19.17 19.17 0.00 6.01
94 95 2.995450 GCCGACTTGTGTACGCGTG 61.995 63.158 24.59 6.18 0.00 5.34
95 96 2.369629 CCGACTTGTGTACGCGTGG 61.370 63.158 24.59 7.09 0.00 4.94
96 97 2.851104 GACTTGTGTACGCGTGGC 59.149 61.111 24.59 15.29 0.00 5.01
97 98 2.663852 ACTTGTGTACGCGTGGCC 60.664 61.111 24.59 10.30 0.00 5.36
98 99 3.773630 CTTGTGTACGCGTGGCCG 61.774 66.667 24.59 1.10 37.07 6.13
113 114 4.778143 CCGCTGTAGCCACCACCC 62.778 72.222 0.00 0.00 37.91 4.61
114 115 3.706373 CGCTGTAGCCACCACCCT 61.706 66.667 0.00 0.00 37.91 4.34
115 116 2.757077 GCTGTAGCCACCACCCTT 59.243 61.111 0.00 0.00 34.31 3.95
116 117 1.074951 GCTGTAGCCACCACCCTTT 59.925 57.895 0.00 0.00 34.31 3.11
117 118 1.244019 GCTGTAGCCACCACCCTTTG 61.244 60.000 0.00 0.00 34.31 2.77
118 119 0.110486 CTGTAGCCACCACCCTTTGT 59.890 55.000 0.00 0.00 0.00 2.83
119 120 1.349688 CTGTAGCCACCACCCTTTGTA 59.650 52.381 0.00 0.00 0.00 2.41
120 121 1.989586 TGTAGCCACCACCCTTTGTAT 59.010 47.619 0.00 0.00 0.00 2.29
121 122 2.377193 TGTAGCCACCACCCTTTGTATT 59.623 45.455 0.00 0.00 0.00 1.89
122 123 2.694616 AGCCACCACCCTTTGTATTT 57.305 45.000 0.00 0.00 0.00 1.40
123 124 2.970987 AGCCACCACCCTTTGTATTTT 58.029 42.857 0.00 0.00 0.00 1.82
124 125 3.313791 AGCCACCACCCTTTGTATTTTT 58.686 40.909 0.00 0.00 0.00 1.94
125 126 3.323691 AGCCACCACCCTTTGTATTTTTC 59.676 43.478 0.00 0.00 0.00 2.29
126 127 3.070302 GCCACCACCCTTTGTATTTTTCA 59.930 43.478 0.00 0.00 0.00 2.69
127 128 4.627058 CCACCACCCTTTGTATTTTTCAC 58.373 43.478 0.00 0.00 0.00 3.18
128 129 4.502431 CCACCACCCTTTGTATTTTTCACC 60.502 45.833 0.00 0.00 0.00 4.02
129 130 3.644265 ACCACCCTTTGTATTTTTCACCC 59.356 43.478 0.00 0.00 0.00 4.61
130 131 3.007506 CCACCCTTTGTATTTTTCACCCC 59.992 47.826 0.00 0.00 0.00 4.95
131 132 3.901222 CACCCTTTGTATTTTTCACCCCT 59.099 43.478 0.00 0.00 0.00 4.79
132 133 4.021456 CACCCTTTGTATTTTTCACCCCTC 60.021 45.833 0.00 0.00 0.00 4.30
133 134 3.513912 CCCTTTGTATTTTTCACCCCTCC 59.486 47.826 0.00 0.00 0.00 4.30
134 135 4.416516 CCTTTGTATTTTTCACCCCTCCT 58.583 43.478 0.00 0.00 0.00 3.69
135 136 5.517655 CCCTTTGTATTTTTCACCCCTCCTA 60.518 44.000 0.00 0.00 0.00 2.94
136 137 6.194967 CCTTTGTATTTTTCACCCCTCCTAT 58.805 40.000 0.00 0.00 0.00 2.57
137 138 6.321435 CCTTTGTATTTTTCACCCCTCCTATC 59.679 42.308 0.00 0.00 0.00 2.08
138 139 6.395780 TTGTATTTTTCACCCCTCCTATCA 57.604 37.500 0.00 0.00 0.00 2.15
139 140 6.395780 TGTATTTTTCACCCCTCCTATCAA 57.604 37.500 0.00 0.00 0.00 2.57
140 141 6.980577 TGTATTTTTCACCCCTCCTATCAAT 58.019 36.000 0.00 0.00 0.00 2.57
141 142 6.833416 TGTATTTTTCACCCCTCCTATCAATG 59.167 38.462 0.00 0.00 0.00 2.82
142 143 3.297134 TTTCACCCCTCCTATCAATGC 57.703 47.619 0.00 0.00 0.00 3.56
143 144 1.891933 TCACCCCTCCTATCAATGCA 58.108 50.000 0.00 0.00 0.00 3.96
144 145 2.204463 TCACCCCTCCTATCAATGCAA 58.796 47.619 0.00 0.00 0.00 4.08
145 146 2.785269 TCACCCCTCCTATCAATGCAAT 59.215 45.455 0.00 0.00 0.00 3.56
146 147 2.889045 CACCCCTCCTATCAATGCAATG 59.111 50.000 0.00 0.00 0.00 2.82
147 148 2.158415 ACCCCTCCTATCAATGCAATGG 60.158 50.000 1.05 0.00 0.00 3.16
148 149 2.158415 CCCCTCCTATCAATGCAATGGT 60.158 50.000 1.05 0.00 0.00 3.55
149 150 3.074390 CCCCTCCTATCAATGCAATGGTA 59.926 47.826 1.05 0.00 0.00 3.25
150 151 4.074970 CCCTCCTATCAATGCAATGGTAC 58.925 47.826 1.05 0.00 0.00 3.34
151 152 3.748048 CCTCCTATCAATGCAATGGTACG 59.252 47.826 1.05 0.00 0.00 3.67
152 153 4.380531 CTCCTATCAATGCAATGGTACGT 58.619 43.478 1.05 0.00 0.00 3.57
153 154 5.510690 CCTCCTATCAATGCAATGGTACGTA 60.511 44.000 1.05 0.00 0.00 3.57
154 155 5.919755 TCCTATCAATGCAATGGTACGTAA 58.080 37.500 1.05 0.00 0.00 3.18
155 156 6.530120 TCCTATCAATGCAATGGTACGTAAT 58.470 36.000 1.05 0.00 0.00 1.89
156 157 6.649141 TCCTATCAATGCAATGGTACGTAATC 59.351 38.462 1.05 0.00 0.00 1.75
157 158 6.650807 CCTATCAATGCAATGGTACGTAATCT 59.349 38.462 1.05 0.00 0.00 2.40
158 159 6.942532 ATCAATGCAATGGTACGTAATCTT 57.057 33.333 1.05 0.00 0.00 2.40
159 160 6.751514 TCAATGCAATGGTACGTAATCTTT 57.248 33.333 1.05 0.00 0.00 2.52
160 161 6.550843 TCAATGCAATGGTACGTAATCTTTG 58.449 36.000 1.05 15.38 0.00 2.77
161 162 4.349663 TGCAATGGTACGTAATCTTTGC 57.650 40.909 26.18 26.18 40.02 3.68
162 163 3.181515 TGCAATGGTACGTAATCTTTGCG 60.182 43.478 26.55 0.00 41.43 4.85
171 172 3.918635 CGTAATCTTTGCGTATTTGCGA 58.081 40.909 0.00 0.00 37.81 5.10
172 173 4.327845 CGTAATCTTTGCGTATTTGCGAA 58.672 39.130 0.00 0.00 37.81 4.70
173 174 4.784045 CGTAATCTTTGCGTATTTGCGAAA 59.216 37.500 0.00 0.00 37.77 3.46
174 175 5.281842 CGTAATCTTTGCGTATTTGCGAAAA 59.718 36.000 0.00 0.00 37.77 2.29
175 176 6.183359 CGTAATCTTTGCGTATTTGCGAAAAA 60.183 34.615 0.00 0.00 38.71 1.94
264 265 5.243283 ACGTACTCACTCCATCCCATAATAC 59.757 44.000 0.00 0.00 0.00 1.89
269 270 7.586349 ACTCACTCCATCCCATAATACAAAAT 58.414 34.615 0.00 0.00 0.00 1.82
274 275 9.438163 ACTCCATCCCATAATACAAAATCATTT 57.562 29.630 0.00 0.00 0.00 2.32
333 335 1.826720 GGAACGGTGGGAGTACATACA 59.173 52.381 0.00 0.00 0.00 2.29
338 354 4.258543 ACGGTGGGAGTACATACAATTTG 58.741 43.478 0.00 0.00 0.00 2.32
622 643 2.514205 TCTTTTGAAAGCAGCTTGCC 57.486 45.000 8.88 4.62 46.52 4.52
634 655 2.581354 CTTGCCAGGACGGAGGAG 59.419 66.667 0.00 0.00 36.56 3.69
741 762 2.862541 CCACACTCATTTCTCAACCCA 58.137 47.619 0.00 0.00 0.00 4.51
788 809 2.264109 TTAGCAGAGTCGCTCTTTCG 57.736 50.000 11.81 0.00 42.62 3.46
790 811 0.598562 AGCAGAGTCGCTCTTTCGAA 59.401 50.000 6.64 0.00 38.99 3.71
849 878 6.280855 TCAGTTTGATGTGCTACTAGCTTA 57.719 37.500 9.49 0.00 42.97 3.09
858 887 4.643784 TGTGCTACTAGCTTACTTAGGACC 59.356 45.833 9.49 0.00 42.97 4.46
861 890 4.278919 GCTACTAGCTTACTTAGGACCTGG 59.721 50.000 3.53 0.00 38.45 4.45
862 891 3.032459 ACTAGCTTACTTAGGACCTGGC 58.968 50.000 3.53 0.00 0.00 4.85
863 892 1.952621 AGCTTACTTAGGACCTGGCA 58.047 50.000 3.53 0.00 0.00 4.92
864 893 1.834263 AGCTTACTTAGGACCTGGCAG 59.166 52.381 7.75 7.75 0.00 4.85
866 895 0.909623 TTACTTAGGACCTGGCAGCC 59.090 55.000 9.56 3.66 0.00 4.85
868 897 1.268283 ACTTAGGACCTGGCAGCCTC 61.268 60.000 15.81 9.04 33.28 4.70
869 898 0.980231 CTTAGGACCTGGCAGCCTCT 60.980 60.000 15.81 10.94 33.28 3.69
870 899 0.978146 TTAGGACCTGGCAGCCTCTC 60.978 60.000 15.81 4.02 33.28 3.20
908 937 0.389166 CAGTGCCTCCGTGTCTTCTC 60.389 60.000 0.00 0.00 0.00 2.87
909 938 0.827925 AGTGCCTCCGTGTCTTCTCA 60.828 55.000 0.00 0.00 0.00 3.27
910 939 0.033504 GTGCCTCCGTGTCTTCTCAA 59.966 55.000 0.00 0.00 0.00 3.02
911 940 0.976641 TGCCTCCGTGTCTTCTCAAT 59.023 50.000 0.00 0.00 0.00 2.57
912 941 1.347707 TGCCTCCGTGTCTTCTCAATT 59.652 47.619 0.00 0.00 0.00 2.32
927 962 4.922206 TCTCAATTTTCACCAGCCATAGT 58.078 39.130 0.00 0.00 0.00 2.12
941 976 3.070159 AGCCATAGTCATACAGCGACAAT 59.930 43.478 0.00 0.00 35.77 2.71
960 995 7.625553 CGACAATAAGGAGAGCAAATTAGAAG 58.374 38.462 0.00 0.00 0.00 2.85
988 1023 1.889530 AAGGGGAAGAGAACTCCGCG 61.890 60.000 0.00 0.00 40.77 6.46
1038 1074 4.380531 ACATAGTGTAATGATCCGCCTTG 58.619 43.478 0.00 0.00 0.00 3.61
1043 1079 0.836606 TAATGATCCGCCTTGGCTCA 59.163 50.000 10.12 7.25 46.40 4.26
1102 1144 8.529424 TCTGATTTCTGCAATTCCTTTATCAT 57.471 30.769 0.00 0.00 0.00 2.45
1730 1779 2.436646 CCAGCCGTGTCCCATGAC 60.437 66.667 0.00 0.00 42.12 3.06
1751 1818 9.708092 CATGACTCATATCAACTACTCAATCAT 57.292 33.333 0.00 0.00 30.82 2.45
1796 1863 6.660521 TCATTTTCAGTGGAGCAGATTTACAT 59.339 34.615 0.00 0.00 0.00 2.29
1899 1966 3.623954 CGGTCTTGGTTTATTAGCCCCTT 60.624 47.826 0.00 0.00 0.00 3.95
2097 2164 4.014406 GGAACCAATAAAACAGGACGGAT 58.986 43.478 0.00 0.00 0.00 4.18
2114 2181 7.499563 CAGGACGGATGTAGTATATACTAGCAT 59.500 40.741 20.62 22.41 39.29 3.79
2162 2229 1.120184 TGGTTGTGGTACGTAGGCCA 61.120 55.000 5.01 0.00 34.58 5.36
2225 2292 1.452110 TTCCTCATCGTCGGTCGTTA 58.548 50.000 0.00 0.00 40.80 3.18
2433 2513 1.686052 CTGCCTAGGTTGGTTTTGCAA 59.314 47.619 11.31 0.00 0.00 4.08
2450 2534 0.998226 CAACAGCGAAATGTGCCGTG 60.998 55.000 0.00 0.00 32.52 4.94
2539 2624 2.485903 TCATTGTGTACTTTCGGCGTT 58.514 42.857 6.85 0.00 0.00 4.84
2543 2628 2.485903 TGTGTACTTTCGGCGTTGAAT 58.514 42.857 6.85 0.00 0.00 2.57
2603 2690 3.191371 GTGGACTTTTGAGCATCCGAAAT 59.809 43.478 0.00 0.00 33.63 2.17
2698 2785 1.004440 GCCTCGAGGTTCACTGCTT 60.004 57.895 31.43 0.00 37.57 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.265196 ACATCAAGCTAGAACCTATCTCTCAG 59.735 42.308 0.00 0.00 39.71 3.35
1 2 6.132658 ACATCAAGCTAGAACCTATCTCTCA 58.867 40.000 0.00 0.00 39.71 3.27
2 3 6.648879 ACATCAAGCTAGAACCTATCTCTC 57.351 41.667 0.00 0.00 39.71 3.20
3 4 8.584157 CAATACATCAAGCTAGAACCTATCTCT 58.416 37.037 0.00 0.00 39.71 3.10
4 5 8.580720 TCAATACATCAAGCTAGAACCTATCTC 58.419 37.037 0.00 0.00 39.71 2.75
5 6 8.484214 TCAATACATCAAGCTAGAACCTATCT 57.516 34.615 0.00 0.00 42.48 1.98
6 7 7.816995 CCTCAATACATCAAGCTAGAACCTATC 59.183 40.741 0.00 0.00 0.00 2.08
7 8 7.510685 TCCTCAATACATCAAGCTAGAACCTAT 59.489 37.037 0.00 0.00 0.00 2.57
8 9 6.839134 TCCTCAATACATCAAGCTAGAACCTA 59.161 38.462 0.00 0.00 0.00 3.08
9 10 5.663106 TCCTCAATACATCAAGCTAGAACCT 59.337 40.000 0.00 0.00 0.00 3.50
10 11 5.755861 GTCCTCAATACATCAAGCTAGAACC 59.244 44.000 0.00 0.00 0.00 3.62
11 12 5.460419 CGTCCTCAATACATCAAGCTAGAAC 59.540 44.000 0.00 0.00 0.00 3.01
12 13 5.359860 TCGTCCTCAATACATCAAGCTAGAA 59.640 40.000 0.00 0.00 0.00 2.10
13 14 4.887655 TCGTCCTCAATACATCAAGCTAGA 59.112 41.667 0.00 0.00 0.00 2.43
14 15 5.188327 TCGTCCTCAATACATCAAGCTAG 57.812 43.478 0.00 0.00 0.00 3.42
15 16 4.499865 GCTCGTCCTCAATACATCAAGCTA 60.500 45.833 0.00 0.00 0.00 3.32
16 17 3.739519 GCTCGTCCTCAATACATCAAGCT 60.740 47.826 0.00 0.00 0.00 3.74
17 18 2.541762 GCTCGTCCTCAATACATCAAGC 59.458 50.000 0.00 0.00 0.00 4.01
18 19 3.785486 TGCTCGTCCTCAATACATCAAG 58.215 45.455 0.00 0.00 0.00 3.02
19 20 3.785486 CTGCTCGTCCTCAATACATCAA 58.215 45.455 0.00 0.00 0.00 2.57
20 21 2.481969 GCTGCTCGTCCTCAATACATCA 60.482 50.000 0.00 0.00 0.00 3.07
21 22 2.131183 GCTGCTCGTCCTCAATACATC 58.869 52.381 0.00 0.00 0.00 3.06
22 23 1.202580 GGCTGCTCGTCCTCAATACAT 60.203 52.381 0.00 0.00 0.00 2.29
23 24 0.175760 GGCTGCTCGTCCTCAATACA 59.824 55.000 0.00 0.00 0.00 2.29
24 25 0.530870 GGGCTGCTCGTCCTCAATAC 60.531 60.000 0.00 0.00 33.40 1.89
25 26 1.686325 GGGGCTGCTCGTCCTCAATA 61.686 60.000 0.00 0.00 37.61 1.90
26 27 2.586792 GGGCTGCTCGTCCTCAAT 59.413 61.111 0.00 0.00 33.40 2.57
27 28 2.798445 TAGGGGCTGCTCGTCCTCAA 62.798 60.000 0.00 0.00 37.61 3.02
28 29 3.296842 TAGGGGCTGCTCGTCCTCA 62.297 63.158 0.00 0.00 37.61 3.86
29 30 2.442272 TAGGGGCTGCTCGTCCTC 60.442 66.667 0.00 0.00 37.61 3.71
30 31 2.760385 GTAGGGGCTGCTCGTCCT 60.760 66.667 0.00 3.99 37.61 3.85
31 32 3.851128 GGTAGGGGCTGCTCGTCC 61.851 72.222 0.00 0.00 36.34 4.79
32 33 2.923634 TAGGGTAGGGGCTGCTCGTC 62.924 65.000 0.00 0.00 0.00 4.20
33 34 2.525284 TTAGGGTAGGGGCTGCTCGT 62.525 60.000 0.00 0.00 0.00 4.18
34 35 1.760875 TTAGGGTAGGGGCTGCTCG 60.761 63.158 0.00 0.00 0.00 5.03
35 36 0.691413 AGTTAGGGTAGGGGCTGCTC 60.691 60.000 0.00 0.00 0.00 4.26
36 37 0.983378 CAGTTAGGGTAGGGGCTGCT 60.983 60.000 0.00 0.00 0.00 4.24
37 38 1.527370 CAGTTAGGGTAGGGGCTGC 59.473 63.158 0.00 0.00 0.00 5.25
38 39 0.983378 AGCAGTTAGGGTAGGGGCTG 60.983 60.000 0.00 0.00 0.00 4.85
39 40 0.691413 GAGCAGTTAGGGTAGGGGCT 60.691 60.000 0.00 0.00 0.00 5.19
40 41 1.697082 GGAGCAGTTAGGGTAGGGGC 61.697 65.000 0.00 0.00 0.00 5.80
41 42 0.326238 TGGAGCAGTTAGGGTAGGGG 60.326 60.000 0.00 0.00 0.00 4.79
42 43 1.123928 CTGGAGCAGTTAGGGTAGGG 58.876 60.000 0.00 0.00 0.00 3.53
43 44 0.466124 GCTGGAGCAGTTAGGGTAGG 59.534 60.000 0.00 0.00 41.59 3.18
44 45 1.490574 AGCTGGAGCAGTTAGGGTAG 58.509 55.000 0.65 0.00 45.16 3.18
45 46 2.024273 AGTAGCTGGAGCAGTTAGGGTA 60.024 50.000 0.00 0.00 45.16 3.69
46 47 1.196012 GTAGCTGGAGCAGTTAGGGT 58.804 55.000 0.00 0.00 45.16 4.34
47 48 1.490574 AGTAGCTGGAGCAGTTAGGG 58.509 55.000 0.00 0.00 45.16 3.53
48 49 2.497675 TCAAGTAGCTGGAGCAGTTAGG 59.502 50.000 0.00 0.00 45.16 2.69
49 50 3.779759 CTCAAGTAGCTGGAGCAGTTAG 58.220 50.000 0.00 0.00 45.16 2.34
50 51 3.876274 CTCAAGTAGCTGGAGCAGTTA 57.124 47.619 0.00 0.00 45.16 2.24
51 52 2.758736 CTCAAGTAGCTGGAGCAGTT 57.241 50.000 0.00 0.00 45.16 3.16
71 72 4.728102 TACACAAGTCGGCGCGGG 62.728 66.667 15.48 2.58 0.00 6.13
72 73 3.475774 GTACACAAGTCGGCGCGG 61.476 66.667 8.83 8.94 0.00 6.46
73 74 3.823421 CGTACACAAGTCGGCGCG 61.823 66.667 0.00 0.00 0.00 6.86
74 75 4.130281 GCGTACACAAGTCGGCGC 62.130 66.667 0.00 0.00 36.76 6.53
75 76 3.823421 CGCGTACACAAGTCGGCG 61.823 66.667 0.00 0.00 41.10 6.46
76 77 2.732094 ACGCGTACACAAGTCGGC 60.732 61.111 11.67 0.00 0.00 5.54
77 78 2.369629 CCACGCGTACACAAGTCGG 61.370 63.158 13.44 0.74 0.00 4.79
78 79 2.995450 GCCACGCGTACACAAGTCG 61.995 63.158 13.44 0.00 0.00 4.18
79 80 2.664436 GGCCACGCGTACACAAGTC 61.664 63.158 13.44 0.00 0.00 3.01
80 81 2.663852 GGCCACGCGTACACAAGT 60.664 61.111 13.44 0.00 0.00 3.16
81 82 3.773630 CGGCCACGCGTACACAAG 61.774 66.667 13.44 0.00 0.00 3.16
98 99 1.074951 AAAGGGTGGTGGCTACAGC 59.925 57.895 1.52 0.00 45.13 4.40
99 100 0.110486 ACAAAGGGTGGTGGCTACAG 59.890 55.000 1.52 0.00 0.00 2.74
100 101 1.436326 TACAAAGGGTGGTGGCTACA 58.564 50.000 1.52 0.00 0.00 2.74
101 102 2.801077 ATACAAAGGGTGGTGGCTAC 57.199 50.000 0.00 0.00 0.00 3.58
102 103 3.818295 AAATACAAAGGGTGGTGGCTA 57.182 42.857 0.00 0.00 0.00 3.93
103 104 2.694616 AAATACAAAGGGTGGTGGCT 57.305 45.000 0.00 0.00 0.00 4.75
104 105 3.070302 TGAAAAATACAAAGGGTGGTGGC 59.930 43.478 0.00 0.00 0.00 5.01
105 106 4.502431 GGTGAAAAATACAAAGGGTGGTGG 60.502 45.833 0.00 0.00 0.00 4.61
106 107 4.502431 GGGTGAAAAATACAAAGGGTGGTG 60.502 45.833 0.00 0.00 0.00 4.17
107 108 3.644265 GGGTGAAAAATACAAAGGGTGGT 59.356 43.478 0.00 0.00 0.00 4.16
108 109 3.007506 GGGGTGAAAAATACAAAGGGTGG 59.992 47.826 0.00 0.00 0.00 4.61
109 110 3.901222 AGGGGTGAAAAATACAAAGGGTG 59.099 43.478 0.00 0.00 0.00 4.61
110 111 4.157246 GAGGGGTGAAAAATACAAAGGGT 58.843 43.478 0.00 0.00 0.00 4.34
111 112 3.513912 GGAGGGGTGAAAAATACAAAGGG 59.486 47.826 0.00 0.00 0.00 3.95
112 113 4.416516 AGGAGGGGTGAAAAATACAAAGG 58.583 43.478 0.00 0.00 0.00 3.11
113 114 6.889722 TGATAGGAGGGGTGAAAAATACAAAG 59.110 38.462 0.00 0.00 0.00 2.77
114 115 6.795590 TGATAGGAGGGGTGAAAAATACAAA 58.204 36.000 0.00 0.00 0.00 2.83
115 116 6.395780 TGATAGGAGGGGTGAAAAATACAA 57.604 37.500 0.00 0.00 0.00 2.41
116 117 6.395780 TTGATAGGAGGGGTGAAAAATACA 57.604 37.500 0.00 0.00 0.00 2.29
117 118 6.239036 GCATTGATAGGAGGGGTGAAAAATAC 60.239 42.308 0.00 0.00 0.00 1.89
118 119 5.833131 GCATTGATAGGAGGGGTGAAAAATA 59.167 40.000 0.00 0.00 0.00 1.40
119 120 4.651045 GCATTGATAGGAGGGGTGAAAAAT 59.349 41.667 0.00 0.00 0.00 1.82
120 121 4.023291 GCATTGATAGGAGGGGTGAAAAA 58.977 43.478 0.00 0.00 0.00 1.94
121 122 3.011144 TGCATTGATAGGAGGGGTGAAAA 59.989 43.478 0.00 0.00 0.00 2.29
122 123 2.580322 TGCATTGATAGGAGGGGTGAAA 59.420 45.455 0.00 0.00 0.00 2.69
123 124 2.204463 TGCATTGATAGGAGGGGTGAA 58.796 47.619 0.00 0.00 0.00 3.18
124 125 1.891933 TGCATTGATAGGAGGGGTGA 58.108 50.000 0.00 0.00 0.00 4.02
125 126 2.734755 TTGCATTGATAGGAGGGGTG 57.265 50.000 0.00 0.00 0.00 4.61
126 127 2.158415 CCATTGCATTGATAGGAGGGGT 60.158 50.000 10.14 0.00 0.00 4.95
127 128 2.158415 ACCATTGCATTGATAGGAGGGG 60.158 50.000 10.14 0.00 0.00 4.79
128 129 3.234234 ACCATTGCATTGATAGGAGGG 57.766 47.619 10.14 0.00 0.00 4.30
129 130 3.748048 CGTACCATTGCATTGATAGGAGG 59.252 47.826 10.14 0.00 0.00 4.30
130 131 4.380531 ACGTACCATTGCATTGATAGGAG 58.619 43.478 10.14 0.00 0.00 3.69
131 132 4.415881 ACGTACCATTGCATTGATAGGA 57.584 40.909 10.14 0.00 0.00 2.94
132 133 6.650807 AGATTACGTACCATTGCATTGATAGG 59.349 38.462 10.14 5.73 0.00 2.57
133 134 7.658179 AGATTACGTACCATTGCATTGATAG 57.342 36.000 10.14 1.93 0.00 2.08
134 135 8.341903 CAAAGATTACGTACCATTGCATTGATA 58.658 33.333 10.14 0.00 0.00 2.15
135 136 6.942532 AAGATTACGTACCATTGCATTGAT 57.057 33.333 10.14 0.00 0.00 2.57
136 137 6.550843 CAAAGATTACGTACCATTGCATTGA 58.449 36.000 10.14 0.00 0.00 2.57
137 138 5.229887 GCAAAGATTACGTACCATTGCATTG 59.770 40.000 21.86 1.49 40.86 2.82
138 139 5.339990 GCAAAGATTACGTACCATTGCATT 58.660 37.500 21.86 0.00 40.86 3.56
139 140 4.495679 CGCAAAGATTACGTACCATTGCAT 60.496 41.667 24.18 5.86 41.15 3.96
140 141 3.181515 CGCAAAGATTACGTACCATTGCA 60.182 43.478 24.18 1.73 41.15 4.08
141 142 3.181514 ACGCAAAGATTACGTACCATTGC 60.182 43.478 19.05 19.05 38.45 3.56
142 143 4.593597 ACGCAAAGATTACGTACCATTG 57.406 40.909 0.00 1.47 38.45 2.82
143 144 6.913873 AATACGCAAAGATTACGTACCATT 57.086 33.333 0.00 0.00 44.15 3.16
144 145 6.711579 CAAATACGCAAAGATTACGTACCAT 58.288 36.000 0.00 0.00 44.15 3.55
145 146 5.446206 GCAAATACGCAAAGATTACGTACCA 60.446 40.000 0.00 0.00 44.15 3.25
146 147 4.959757 GCAAATACGCAAAGATTACGTACC 59.040 41.667 0.00 0.00 44.15 3.34
147 148 4.658723 CGCAAATACGCAAAGATTACGTAC 59.341 41.667 0.00 0.00 44.15 3.67
148 149 4.562000 TCGCAAATACGCAAAGATTACGTA 59.438 37.500 0.00 0.00 45.26 3.57
149 150 3.368539 TCGCAAATACGCAAAGATTACGT 59.631 39.130 0.00 0.00 43.45 3.57
150 151 3.918635 TCGCAAATACGCAAAGATTACG 58.081 40.909 0.00 0.00 0.00 3.18
151 152 6.605496 TTTTCGCAAATACGCAAAGATTAC 57.395 33.333 0.00 0.00 0.00 1.89
173 174 5.723295 CTTGCTATTGTGCACCCTATTTTT 58.277 37.500 15.69 0.00 43.20 1.94
174 175 4.381932 GCTTGCTATTGTGCACCCTATTTT 60.382 41.667 15.69 0.00 43.20 1.82
175 176 3.131046 GCTTGCTATTGTGCACCCTATTT 59.869 43.478 15.69 0.00 43.20 1.40
176 177 2.689983 GCTTGCTATTGTGCACCCTATT 59.310 45.455 15.69 0.00 43.20 1.73
177 178 2.301346 GCTTGCTATTGTGCACCCTAT 58.699 47.619 15.69 7.86 43.20 2.57
182 183 2.359900 AGTAGGCTTGCTATTGTGCAC 58.640 47.619 10.75 10.75 43.20 4.57
333 335 6.384224 CACACTATGCATCACAGAACAAATT 58.616 36.000 0.19 0.00 0.00 1.82
601 622 3.181463 TGGCAAGCTGCTTTCAAAAGAAT 60.181 39.130 13.10 0.00 44.28 2.40
614 635 2.435586 CTCCGTCCTGGCAAGCTG 60.436 66.667 0.00 0.00 37.80 4.24
622 643 0.970937 TAAGCACCTCCTCCGTCCTG 60.971 60.000 0.00 0.00 0.00 3.86
788 809 1.981256 ATCCTCCTCTCGCTCTCTTC 58.019 55.000 0.00 0.00 0.00 2.87
790 811 3.330701 AGATAATCCTCCTCTCGCTCTCT 59.669 47.826 0.00 0.00 0.00 3.10
793 814 5.241949 TGTTAAGATAATCCTCCTCTCGCTC 59.758 44.000 0.00 0.00 0.00 5.03
798 819 9.661954 TCAATACTGTTAAGATAATCCTCCTCT 57.338 33.333 0.00 0.00 0.00 3.69
838 864 4.278919 CCAGGTCCTAAGTAAGCTAGTAGC 59.721 50.000 14.62 14.62 42.84 3.58
849 878 1.229658 AGGCTGCCAGGTCCTAAGT 60.230 57.895 22.65 0.00 0.00 2.24
858 887 2.422832 GAGAAAATTGAGAGGCTGCCAG 59.577 50.000 22.65 0.00 0.00 4.85
861 890 7.559590 TTTATAGAGAAAATTGAGAGGCTGC 57.440 36.000 0.00 0.00 0.00 5.25
863 892 9.785982 GGTATTTATAGAGAAAATTGAGAGGCT 57.214 33.333 0.00 0.00 0.00 4.58
864 893 9.561069 TGGTATTTATAGAGAAAATTGAGAGGC 57.439 33.333 0.00 0.00 0.00 4.70
869 898 9.120538 GGCACTGGTATTTATAGAGAAAATTGA 57.879 33.333 0.00 0.00 0.00 2.57
870 899 9.125026 AGGCACTGGTATTTATAGAGAAAATTG 57.875 33.333 0.00 0.00 37.18 2.32
908 937 5.587388 ATGACTATGGCTGGTGAAAATTG 57.413 39.130 0.00 0.00 0.00 2.32
909 938 6.186957 TGTATGACTATGGCTGGTGAAAATT 58.813 36.000 0.00 0.00 0.00 1.82
910 939 5.754782 TGTATGACTATGGCTGGTGAAAAT 58.245 37.500 0.00 0.00 0.00 1.82
911 940 5.172687 TGTATGACTATGGCTGGTGAAAA 57.827 39.130 0.00 0.00 0.00 2.29
912 941 4.769688 CTGTATGACTATGGCTGGTGAAA 58.230 43.478 0.00 0.00 0.00 2.69
927 962 4.499865 GCTCTCCTTATTGTCGCTGTATGA 60.500 45.833 0.00 0.00 0.00 2.15
941 976 5.804639 TGTGCTTCTAATTTGCTCTCCTTA 58.195 37.500 0.00 0.00 0.00 2.69
960 995 1.556911 TCTCTTCCCCTTGATCTGTGC 59.443 52.381 0.00 0.00 0.00 4.57
1038 1074 2.293170 GGGCAATAAGAAGACTGAGCC 58.707 52.381 0.00 0.00 40.08 4.70
1043 1079 0.107165 GCCGGGGCAATAAGAAGACT 60.107 55.000 2.18 0.00 41.49 3.24
1102 1144 2.490903 GGTCGAGTAGTACCTGCAGAAA 59.509 50.000 17.39 0.00 32.72 2.52
1210 1259 2.036414 TCCTCTGGCAGCGTCTCT 59.964 61.111 10.34 0.00 0.00 3.10
1273 1322 4.451150 TGGCTCGCCGTGATGACC 62.451 66.667 3.14 0.00 39.42 4.02
1811 1878 9.816354 AACAAGAAATTAAATGCAGTACAGTTT 57.184 25.926 0.00 0.00 37.77 2.66
1973 2040 7.335673 TGAATTCGTATTTGAACATAGCTTCCA 59.664 33.333 0.00 0.00 0.00 3.53
2074 2141 3.150767 CCGTCCTGTTTTATTGGTTCCA 58.849 45.455 0.00 0.00 0.00 3.53
2075 2142 3.414269 TCCGTCCTGTTTTATTGGTTCC 58.586 45.455 0.00 0.00 0.00 3.62
2077 2144 4.403734 ACATCCGTCCTGTTTTATTGGTT 58.596 39.130 0.00 0.00 0.00 3.67
2194 2261 0.744414 ATGAGGAAATCGTGTGGCCG 60.744 55.000 0.00 0.00 0.00 6.13
2225 2292 4.263639 ACAACACATGGTGAGATCCAATCT 60.264 41.667 3.38 0.00 43.70 2.40
2539 2624 2.669133 CCTGACGAGGCCCCATTCA 61.669 63.158 0.00 0.00 30.52 2.57
2574 2659 2.215196 GCTCAAAAGTCCACCAACGTA 58.785 47.619 0.00 0.00 0.00 3.57
2603 2690 0.475632 ATCCCTCCCAAGTGTGTGGA 60.476 55.000 0.00 0.00 41.65 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.